Query psy2705
Match_columns 203
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 46136
Date Fri Aug 16 23:06:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2705.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2705hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF13817 DDE_Tnp_IS66_C: IS66 20.3 32 0.00069 22.0 -0.1 10 142-151 30-39 (39)
2 KOG1891|consensus 14.7 24 0.00051 31.6 -2.3 51 86-138 194-246 (271)
3 PF01023 S_100: S-100/ICaBP ty 13.7 1.1E+02 0.0024 19.6 1.2 24 107-130 20-43 (44)
4 PF12875 DUF3826: Protein of u 11.5 2E+02 0.0043 24.5 2.4 30 15-44 120-149 (188)
5 PF10950 DUF2775: Protein of u 10.7 66 0.0014 24.6 -0.7 9 93-101 7-15 (108)
6 PF15059 Speriolin_C: Sperioli 10.1 1E+02 0.0022 25.5 0.1 14 181-194 86-99 (146)
7 COG0621 MiaB 2-methylthioadeni 9.2 5.7E+02 0.012 23.6 4.6 55 17-71 306-376 (437)
8 PF09643 YopX: YopX protein; 7.9 1.2E+02 0.0026 20.1 -0.2 13 182-194 109-121 (121)
9 PF08984 DUF1858: Domain of un 7.6 1.3E+02 0.0029 19.5 -0.1 16 182-197 7-22 (59)
10 PLN02999 photosystem II oxygen 7.5 1.1E+02 0.0023 26.3 -0.7 37 166-203 81-117 (190)
No 1
>PF13817 DDE_Tnp_IS66_C: IS66 C-terminal element
Probab=20.29 E-value=32 Score=22.04 Aligned_cols=10 Identities=60% Similarity=1.434 Sum_probs=7.9
Q ss_pred CCccccccCC
Q psy2705 142 PDLKEILPWN 151 (203)
Q Consensus 142 pdlkeilpwn 151 (203)
-++.+.||||
T Consensus 30 ~~~~~LLPwn 39 (39)
T PF13817_consen 30 NDIDELLPWN 39 (39)
T ss_pred HHHHHhCCCC
Confidence 3578889997
No 2
>KOG1891|consensus
Probab=14.66 E-value=24 Score=31.57 Aligned_cols=51 Identities=39% Similarity=0.538 Sum_probs=35.3
Q ss_pred CCCCCCCCcccch--hhhhhhhhccCCCCchhhhhhhhhhccccchhhhcccccc
Q psy2705 86 DLKEIPPWKGVMK--DERYDLMKNEKPDLMKDEKLDLMENEMPDLMKDEKHDLVK 138 (203)
Q Consensus 86 dlkeippwkgvmk--derydlmknekpdlmkdekldlmenempdlmkdekhdlvk 138 (203)
.++|||||--|.. |..||-+ -+-||+.=+.|+-.+.-|--|.|.|-.++||
T Consensus 194 ~~~EiP~WL~vYa~adss~DHl--L~w~lF~l~~L~~y~~ml~~LfkqEl~~IVk 246 (271)
T KOG1891|consen 194 EEKEIPPWLLVYAQADSSLDHL--LEWDLFNLEQLTEYEHMLMKLFKQELFDIVK 246 (271)
T ss_pred hhhhcCHHHHHHhcCccchhhh--hhhhccchhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4689999988864 3444433 2456677777777777777777887777765
No 3
>PF01023 S_100: S-100/ICaBP type calcium binding domain; InterPro: IPR013787 The calcium-binding domain found in S100 and CaBP-9k proteins is a subfamily of the EF-hand calcium-binding domain []. S100s are small dimeric acidic calcium and zinc-binding proteins abundant in the brain, with S100B playing an important role in modulating the proliferation and differentiation of neurons and glia cells []. S100 proteins have two different types of calcium-binding sites: a low affinity one with a special structure, and a 'normal' EF-hand type high-affinity site. Calbindin-D9k (CaBP-9k) also belong to this family of proteins, but it does not form dimers. CaBP-9k is a cytosolic protein expressed in a variety of tissues. Although its precise function is unknown, it appears to be under the control of the steroid hormones oestrogen and progesterone in the female reproductive system []. In the intestine, CaBP-9k may be involved in calcium absorption by mediating intracellular diffusion []. This entry represents a subdomain of the calcium-binding domain found in S100, CaBP-9k, and related proteins.; PDB: 2RGI_A 4DUQ_B 2KAY_B 2KAX_A 2CNP_A 1CNP_A 1A03_A 1JWD_B 2JTT_A 1XK4_B ....
Probab=13.74 E-value=1.1e+02 Score=19.58 Aligned_cols=24 Identities=38% Similarity=0.686 Sum_probs=18.8
Q ss_pred ccCCCCchhhhhhhhhhccccchh
Q psy2705 107 NEKPDLMKDEKLDLMENEMPDLMK 130 (203)
Q Consensus 107 nekpdlmkdekldlmenempdlmk 130 (203)
..+.-|-|.|=-.|+++|+|++++
T Consensus 20 Gd~~~Lsk~Elk~Ll~~Elp~flk 43 (44)
T PF01023_consen 20 GDKDTLSKKELKELLEKELPNFLK 43 (44)
T ss_dssp SSTTSEEHHHHHHHHHHHSTTTHH
T ss_pred CCCCeEcHHHHHHHHHHHHHHHhc
Confidence 445567788888899999999876
No 4
>PF12875 DUF3826: Protein of unknown function (DUF3826); InterPro: IPR024284 This is a putative sugar-binding family.; PDB: 3KDW_A 3G6I_A.
Probab=11.51 E-value=2e+02 Score=24.54 Aligned_cols=30 Identities=33% Similarity=0.489 Sum_probs=21.9
Q ss_pred ccCcchhHHHHHHHHHhhhhhhhhhhhccC
Q psy2705 15 HEMPDLMEEEKQELLDLMKDERYDLMKNEK 44 (203)
Q Consensus 15 hempdlmeeekqelldlmkderydlmknek 44 (203)
.-.|+|-|+|++.++..++..|---|--+.
T Consensus 120 ~mvP~Lteeek~~I~~~L~eARE~A~D~~~ 149 (188)
T PF12875_consen 120 DMVPSLTEEEKAQILTWLKEAREFAMDAKS 149 (188)
T ss_dssp HH-TT--HHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHcCcccHHHHHHHHHHHHHHHHHhccccc
Confidence 357999999999999999998877665443
No 5
>PF10950 DUF2775: Protein of unknown function (DUF2775); InterPro: IPR024489 This eukaryotic family includes a number of plant organ-specific proteins. While their function is unknown, their predicted amino acid sequence suggests that these proteins could be exported and glycosylated [].
Probab=10.69 E-value=66 Score=24.64 Aligned_cols=9 Identities=67% Similarity=1.254 Sum_probs=7.6
Q ss_pred Ccccchhhh
Q psy2705 93 WKGVMKDER 101 (203)
Q Consensus 93 wkgvmkder 101 (203)
||.||||+-
T Consensus 7 WK~vMKDqp 15 (108)
T PF10950_consen 7 WKDVMKDQP 15 (108)
T ss_pred HHHhhcCCC
Confidence 999999863
No 6
>PF15059 Speriolin_C: Speriolin C-terminus
Probab=10.11 E-value=1e+02 Score=25.51 Aligned_cols=14 Identities=43% Similarity=1.070 Sum_probs=11.8
Q ss_pred ccccccccCccHHH
Q psy2705 181 KKYGLIKERPDLLE 194 (203)
Q Consensus 181 kkyglikerpdlle 194 (203)
.+||.+++|||+-.
T Consensus 86 N~yGILr~rp~l~a 99 (146)
T PF15059_consen 86 NTYGILRERPELAA 99 (146)
T ss_pred HHccccccCccccc
Confidence 58999999998753
No 7
>COG0621 MiaB 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis]
Probab=9.22 E-value=5.7e+02 Score=23.56 Aligned_cols=55 Identities=31% Similarity=0.488 Sum_probs=43.8
Q ss_pred CcchhHHHHHHHHHhhhhhhhhh----------------hhccCCcchhHHHhhhhhHHhhhhhhHhhhhh
Q psy2705 17 MPDLMEEEKQELLDLMKDERYDL----------------MKNEKPDLMKEERLDLMKEEKLDWMKNEKRDL 71 (203)
Q Consensus 17 mpdlmeeekqelldlmkderydl----------------mknekpdlmkeerldlmkeekldwmknekrdl 71 (203)
.|.=-||.-|+.++++++-|+|- |.+.-|+-.|.+|+..+.+-...+-...-+..
T Consensus 306 FPgETeedFe~tl~lv~e~~fd~~~~F~YSpRpGTpAa~~~~qvp~~vkkeR~~~L~~l~~~~~~~~~~~~ 376 (437)
T COG0621 306 FPGETEEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQISAEFNQKL 376 (437)
T ss_pred CCCCCHHHHHHHHHHHHHhCCCEEeeeecCCCCCCccccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 56667999999999999999873 67788889999999999887777665444433
No 8
>PF09643 YopX: YopX protein; InterPro: IPR019096 YopX is a protein of plasmid origin found in bacteria. It is of approx. 135 residues and is largely helical, with three identical chains probably complexing into a twelve-chain structure. Yop proteins are a subset of pathogenicity factors known as (Yersinia) outer proteins - Yops - which act as chaperones for other proteins such as X. They are exported by the type III secretion system (TTSS) upon bacterial infection of host cells. The TTSS is encoded on a virulence plasmid and is necessary for the survival and replication of the bacterium within host lymphoid tissues []. ; PDB: 2QYZ_A 2P84_A 2OX7_D 2I2L_B.
Probab=7.88 E-value=1.2e+02 Score=20.10 Aligned_cols=13 Identities=54% Similarity=0.741 Sum_probs=9.2
Q ss_pred cccccccCccHHH
Q psy2705 182 KYGLIKERPDLLE 194 (203)
Q Consensus 182 kyglikerpdlle 194 (203)
--|=|-|+|+|||
T Consensus 109 VIGNIyENpELLe 121 (121)
T PF09643_consen 109 VIGNIYENPELLE 121 (121)
T ss_dssp EEEETTTSCCGGS
T ss_pred EEeeecCChhhcC
Confidence 3466778888875
No 9
>PF08984 DUF1858: Domain of unknown function (DUF1858); InterPro: IPR015077 This protein has no known function. It is found in various hypothetical bacterial proteins. ; PDB: 2K53_A 2K5E_A 2FI0_A.
Probab=7.61 E-value=1.3e+02 Score=19.46 Aligned_cols=16 Identities=44% Similarity=0.866 Sum_probs=12.1
Q ss_pred cccccccCccHHHHHh
Q psy2705 182 KYGLIKERPDLLEILA 197 (203)
Q Consensus 182 kyglikerpdlleila 197 (203)
-|-+++..|++.++|.
T Consensus 7 I~el~~~yP~~~~il~ 22 (59)
T PF08984_consen 7 IYELLEQYPELIEILV 22 (59)
T ss_dssp HHHHHHH-GGGHHHHH
T ss_pred HHHHHHHCHHHHHHHH
Confidence 4668889999999885
No 10
>PLN02999 photosystem II oxygen-evolving enhancer 3 protein (PsbQ)
Probab=7.45 E-value=1.1e+02 Score=26.30 Aligned_cols=37 Identities=30% Similarity=0.598 Sum_probs=30.3
Q ss_pred CCcchhHHhhhhhhcccccccccCccHHHHHhhhhhcC
Q psy2705 166 KPDLMKEERLDLIQDKKYGLIKERPDLLEILAWKYVMK 203 (203)
Q Consensus 166 kpdlmkeerldliqdkkyglikerpdlleilawkyvmk 203 (203)
-|++--||...-|..--.||+.-+ +|++--||.||++
T Consensus 81 ~p~lspeeAaaRiK~sA~dLl~vK-~LId~~aW~YVq~ 117 (190)
T PLN02999 81 MPGLSPEDAAARIKQTAEGLRDMR-EMLDHMSWRYVIF 117 (190)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHH-HHhccccHHHHHH
Confidence 478888898888888888887665 5889999999974
Done!