Query psy2705
Match_columns 203
No_of_seqs 1 out of 3
Neff 1.0
Searched_HMMs 29240
Date Fri Aug 16 23:07:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2705.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2705hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4abx_A DNA repair protein RECN 13.9 73 0.0025 23.2 1.5 23 172-199 128-152 (175)
2 3kdw_A Putative sugar binding 8.6 1.7E+02 0.006 24.4 2.2 30 15-44 148-177 (221)
3 3s3x_D Psalmotoxin-1; acid-sen 7.2 1.3E+02 0.0043 19.2 0.6 10 89-98 2-11 (37)
4 2zet_C Melanophilin; complex, 5.5 2.6E+02 0.0089 20.9 1.7 34 19-59 16-49 (153)
5 1l6x_B Minimized B-domain of p 5.4 3.7E+02 0.012 16.8 2.0 19 16-34 14-32 (34)
6 4ftf_A Alternate secretin path 5.3 4.5E+02 0.016 19.8 2.8 24 23-46 4-27 (112)
7 1ucr_A Protein DSVD; dissimila 4.7 2.4E+02 0.0082 20.1 0.9 15 21-35 1-15 (78)
8 3nme_A Ptpkis1 protein, SEX4 g 4.3 3E+02 0.01 21.4 1.3 23 156-179 262-284 (294)
9 3ktp_B Trinucleotide repeat-co 4.2 3E+02 0.01 15.8 0.9 12 85-96 8-19 (22)
10 4fqn_A Malcavernin; helical do 3.7 4.6E+02 0.016 19.4 1.8 26 21-46 50-75 (98)
No 1
>4abx_A DNA repair protein RECN; DNA binding protein, ATP binding protein, double break repair, coiled-coil; HET: DNA; 2.04A {Deinococcus radiodurans}
Probab=13.87 E-value=73 Score=23.22 Aligned_cols=23 Identities=35% Similarity=0.759 Sum_probs=16.4
Q ss_pred HHhhhhhhc--ccccccccCccHHHHHhhh
Q psy2705 172 EERLDLIQD--KKYGLIKERPDLLEILAWK 199 (203)
Q Consensus 172 eerldliqd--kkyglikerpdlleilawk 199 (203)
++|++.|.. +||| +++-++++|.
T Consensus 128 e~RL~~l~~L~RKyg-----~~~eell~~~ 152 (175)
T 4abx_A 128 EARLSALSKLKNKYG-----PTLEDVVEFG 152 (175)
T ss_dssp HHHHHHHHHHHHHHC-----SSHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCHHHHHHHH
Confidence 678888875 6898 5666677664
No 2
>3kdw_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; HET: MSE; 1.70A {Bacteroides vulgatus atcc 8482} PDB: 3g6i_A*
Probab=8.62 E-value=1.7e+02 Score=24.37 Aligned_cols=30 Identities=30% Similarity=0.448 Sum_probs=24.6
Q ss_pred ccCcchhHHHHHHHHHhhhhhhhhhhhccC
Q psy2705 15 HEMPDLMEEEKQELLDLMKDERYDLMKNEK 44 (203)
Q Consensus 15 hempdlmeeekqelldlmkderydlmknek 44 (203)
.-.|+|-++|++.++..++..|--.|--+.
T Consensus 148 ~mvP~Lteeek~~I~~~L~eARE~AmD~~~ 177 (221)
T 3kdw_A 148 DMIPTLKEEEKAQIMAWLVEAREFAMDAEN 177 (221)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHHTTSSS
T ss_pred HHcCcccHHHHHHHHHHHHHHHHHhccccc
Confidence 357999999999999999998877665443
No 3
>3s3x_D Psalmotoxin-1; acid-sensing, ION channel, membrane protein, sodium channel, membrane, glycoprotein, ION transport, membrane; HET: NAG; 2.99A {Psalmopoeus cambridgei} PDB: 2kni_A 1lmm_A 4fz0_M* 4fz1_D*
Probab=7.23 E-value=1.3e+02 Score=19.25 Aligned_cols=10 Identities=50% Similarity=1.145 Sum_probs=7.5
Q ss_pred CCCCCcccch
Q psy2705 89 EIPPWKGVMK 98 (203)
Q Consensus 89 eippwkgvmk 98 (203)
-||-|||...
T Consensus 2 cipkwkgcvn 11 (37)
T 3s3x_D 2 CIPKWKGCVN 11 (37)
T ss_dssp CBCTTCBCTT
T ss_pred Ccccccchhc
Confidence 3899999753
No 4
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=5.55 E-value=2.6e+02 Score=20.90 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=22.4
Q ss_pred chhHHHHHHHHHhhhhhhhhhhhccCCcchhHHHhhhhhHH
Q psy2705 19 DLMEEEKQELLDLMKDERYDLMKNEKPDLMKEERLDLMKEE 59 (203)
Q Consensus 19 dlmeeekqelldlmkderydlmknekpdlmkeerldlmkee 59 (203)
-|-++|++-++..+. |..-+ .-..++|+.-++.+
T Consensus 16 ~LteeEr~~Il~VL~--Rd~~l-----~~~EeeRi~kLk~~ 49 (153)
T 2zet_C 16 TLTDEEAEHVWAVVQ--RDFDL-----RRREEERLQGLKGK 49 (153)
T ss_dssp TSCHHHHHHHHHHHH--HHHHH-----HHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH--hHHHH-----HHhHHHHHHHHHHH
Confidence 368999999999873 32222 23456787777665
No 5
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=5.40 E-value=3.7e+02 Score=16.85 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=14.8
Q ss_pred cCcchhHHHHHHHHHhhhh
Q psy2705 16 EMPDLMEEEKQELLDLMKD 34 (203)
Q Consensus 16 empdlmeeekqelldlmkd 34 (203)
.||.|-||++...+.-+||
T Consensus 14 h~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 14 HDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HCTTCCHHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHhHHHHHhc
Confidence 3788888888887777765
No 6
>4ftf_A Alternate secretin pathway subunit S (VC395_1821,; pilotin, lipoprotein, protein secretion, pfamb PB0 secretin binding, outer membrane; 1.48A {Vibrio cholerae}
Probab=5.25 E-value=4.5e+02 Score=19.77 Aligned_cols=24 Identities=38% Similarity=0.508 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhhhhhhhhccCCc
Q psy2705 23 EEKQELLDLMKDERYDLMKNEKPD 46 (203)
Q Consensus 23 eekqelldlmkderydlmknekpd 46 (203)
.|||.-++++.+.|-.++..+-|=
T Consensus 4 ~ekq~~lelLA~~RA~~Lss~LPl 27 (112)
T 4ftf_A 4 AEKQRNLELLAGNRASLLSTELPL 27 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCSE
T ss_pred hHHHHHHHHHHHHHHHHhhccCCc
Confidence 389999999999999999888773
No 7
>1ucr_A Protein DSVD; dissimilatory sulfite reductase D, DNA binding motif, sulfate-reducing bacteria, winged-helix motif, unknown function; 1.20A {Desulfovibrio vulgaris} SCOP: a.4.5.45 PDB: 1wq2_A
Probab=4.74 E-value=2.4e+02 Score=20.14 Aligned_cols=15 Identities=40% Similarity=0.760 Sum_probs=11.9
Q ss_pred hHHHHHHHHHhhhhh
Q psy2705 21 MEEEKQELLDLMKDE 35 (203)
Q Consensus 21 meeekqelldlmkde 35 (203)
|++.||.+++.++.-
T Consensus 1 Mee~K~~Ile~l~~k 15 (78)
T 1ucr_A 1 MEEAKQKVVDFLNSK 15 (78)
T ss_dssp CCHHHHHHHHHHSSH
T ss_pred ChHHHHHHHHHHHhc
Confidence 578899999988764
No 8
>3nme_A Ptpkis1 protein, SEX4 glucan phosphatase; dual specificity phosphatase, carbohydrate BIND hydrolase; 2.40A {Arabidopsis thaliana}
Probab=4.28 E-value=3e+02 Score=21.39 Aligned_cols=23 Identities=48% Similarity=0.703 Sum_probs=17.0
Q ss_pred hhhhhhhhccCCcchhHHhhhhhh
Q psy2705 156 DERYDLMKNEKPDLMKEERLDLIQ 179 (203)
Q Consensus 156 derydlmknekpdlmkeerldliq 179 (203)
.-|-.+. +..|+|..+||+.+.|
T Consensus 262 ~~~~~~~-~~~~~~~~~~~~~~~~ 284 (294)
T 3nme_A 262 TTRERLS-SEDPELLEEERSKLIQ 284 (294)
T ss_dssp THHHHHS-SSSCCCCHHHHHHHHH
T ss_pred HHHHHhh-cCCccccHHHHHHHHH
Confidence 3344444 6899999999998765
No 9
>3ktp_B Trinucleotide repeat-containing gene 6C protein; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding; 1.50A {Homo sapiens}
Probab=4.24 E-value=3e+02 Score=15.76 Aligned_cols=12 Identities=42% Similarity=1.096 Sum_probs=8.3
Q ss_pred CCCCCCCCCccc
Q psy2705 85 PDLKEIPPWKGV 96 (203)
Q Consensus 85 pdlkeippwkgv 96 (203)
|.++---||||+
T Consensus 8 Pef~pg~pwkG~ 19 (22)
T 3ktp_B 8 PEFHPGVPWKGL 19 (26)
T ss_pred cccccCCccccc
Confidence 455555689997
No 10
>4fqn_A Malcavernin; helical domain, harmonin-homology domain, protein-protein interaction, HOMO-dimer, protein binding; 1.90A {Homo sapiens}
Probab=3.73 E-value=4.6e+02 Score=19.41 Aligned_cols=26 Identities=27% Similarity=0.198 Sum_probs=20.4
Q ss_pred hHHHHHHHHHhhhhhhhhhhhccCCc
Q psy2705 21 MEEEKQELLDLMKDERYDLMKNEKPD 46 (203)
Q Consensus 21 meeekqelldlmkderydlmknekpd 46 (203)
.++--|+|++|.-++|+.|+.--+|=
T Consensus 50 I~~Fc~kLl~LyG~~Rk~LL~gmRpF 75 (98)
T 4fqn_A 50 IHEFCINLRQLYGDSRKFLLLGLRPF 75 (98)
T ss_dssp HHHHHHHHHHHHCGGGGGGGGGGGGG
T ss_pred HHHHHHHHHHHhchHHHHHHhhccCC
Confidence 34566889999999999998876664
Done!