RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy2705
         (203 letters)



>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
           binding domain.  Human SGLT1 (hSGLT1) is a
           high-affinity/low-capacity glucose transporter, which
           can also transport galactose. In the transport
           mechanism, two Na+ ions first bind to the extracellular
           side of the transporter and induce a conformational
           change in the glucose binding site. This results in an
           increased affinity for glucose. A second conformational
           change in the transporter follows, bringing the Na+ and
           glucose binding sites to the inner surface of the
           membrane. Glucose is then released, followed by the Na+
           ions. In the process, hSGLT1 is also able to transport
           water and urea and may be a major pathway for transport
           of these across the intestinal brush-border membrane.
           hSGLT1 is encoded by the SLC5A1 gene and expressed
           mostly in the intestine, but also in the trachea,
           kidney, heart, brain, testis, and prostate. The
           WHO/UNICEF oral rehydration solution (ORS) for the
           treatment of secretory diarrhea contains salt and
           glucose. The glucose, along with sodium ions, is
           transported by hSGLT1 and water is either co-transported
           along with these or follows by osmosis. Mutations in
           SGLT1 are associated with intestinal glucose galactose
           malabsorption (GGM). Up-regulation of intestinal SGLT1
           may protect against enteric infections. SGLT1 is
           expressed in colorectal, head and neck, and prostate
           tumors. Epidermal growth factor receptor (EGFR)
           functions in cell survival by stabilizing SGLT1, and
           thereby maintaining intracellular glucose levels. SGLT1
           is predicted to have 14 membrane-spanning regions. This
           subgroup belongs to the solute carrier 5
           (SLC5)transporter family.
          Length = 635

 Score = 35.6 bits (82), Expect = 0.014
 Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 15/103 (14%)

Query: 4   LMKGEMPDLMKHEMPDLMEEEKQELLDLMKDERYDLMKNEKPDLMKEERLDLMKEEK--- 60
           LM   +PD   + +   +    +E +DL  D+       E  D   E   D  +++    
Sbjct: 520 LMTKPIPDKHLYRLCWSLRNSTEERIDLDADD-----WTEDED-ENEMETDEERKKPGCC 573

Query: 61  ---LDW---MKNEKRDLMKEEKPDLMKEKKPDLKEIPPWKGVM 97
               +W       K   + EE+   +K K  D  E P W+ V+
Sbjct: 574 RKAYNWFCGFDQGKAPKLTEEEEAALKMKMTDTSEKPLWRNVV 616


>gnl|CDD|150445 pfam09774, Cid2, Caffeine-induced death protein 2.  Members of this
           family of proteins mediate the disruption of the DNA
           replication checkpoint (S-M checkpoint) mechanism caused
           by caffeine.
          Length = 149

 Score = 30.0 bits (68), Expect = 0.49
 Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)

Query: 11  DLMKHEMPDLMEEEKQELLDLMKDERYDLMKNEKPDLMKEERLDLMKEEKLDWMKNEK 68
              K E PD + +E  +L +   DER D      P   +  R +L  E   +W++NE+
Sbjct: 72  TSPKPEDPDGLLQESAKLREPRVDERLD------PYAARFFRRELECESLANWLQNER 123


>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
          Length = 508

 Score = 28.9 bits (65), Expect = 1.7
 Identities = 25/117 (21%), Positives = 52/117 (44%), Gaps = 6/117 (5%)

Query: 22  EEEKQELLDLMKDERYDLMKNEKPDLMKEERLDLMKEEKLDWMKNEKRDLMKEEKPDLMK 81
             E +ELL   ++++    + E+ +L +EE   + KEE+LD  + EK D ++ +  +  K
Sbjct: 54  LLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLD-ARAEKLDNLENQLEEREK 112

Query: 82  EKKPDLKEIPPWKGVMKDERYDLMKNEKPDLMKDEKLDLMENEMPDLMKDEKHDLVK 138
                  E+        +++ D        L  ++   L+   +   +++EK   VK
Sbjct: 113 ALSARELEL-----EELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEEKAQRVK 164


>gnl|CDD|178050 PLN02431, PLN02431, ferredoxin--nitrite reductase.
          Length = 587

 Score = 29.0 bits (65), Expect = 1.9
 Identities = 20/60 (33%), Positives = 28/60 (46%), Gaps = 3/60 (5%)

Query: 96  VMKDE-RYDLMKNEKPDLMKDEKLDLMENEMPDL--MKDEKHDLVKDEKPDLKEILPWNG 152
           V+K+E R  +   EK  L K+     MEN + +L     E+ D  K  K D+   L W G
Sbjct: 66  VLKEEFRKGINPQEKVKLEKEPMKLFMENGIEELAKTPFEEIDKSKLSKDDIDVRLKWLG 125


>gnl|CDD|221881 pfam12982, DUF3866, Protein of unknown function (DUF3866).  This
           family of proteins is functionally uncharacterized. This
           family of proteins is found in bacteria. Proteins in
           this family are typically between 352 and 374 amino
           acids in length.
          Length = 320

 Score = 27.9 bits (63), Expect = 3.6
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 112 LMKDEKLDLMENEMPDLMKDEKHDLVKDEKPDLKEIL 148
           +++DEK  L+E ++  L    KH ++  ++  L E L
Sbjct: 255 ILEDEKKALVEEQLKLLGLAAKHRVIVVDEEGLLEAL 291


>gnl|CDD|223694 COG0621, MiaB, 2-methylthioadenine synthetase [Translation,
           ribosomal structure and biogenesis].
          Length = 437

 Score = 27.9 bits (63), Expect = 3.7
 Identities = 16/58 (27%), Positives = 30/58 (51%), Gaps = 16/58 (27%)

Query: 22  EEEKQELLDLMKDERYD----------------LMKNEKPDLMKEERLDLMKEEKLDW 63
           EE+ +E LDL+++ R+D                LM ++ P+ +K+ERL  ++E +   
Sbjct: 311 EEDFEETLDLVEEVRFDRLHVFKYSPRPGTPAALMPDQVPEEVKKERLRRLQELQQQI 368


>gnl|CDD|236978 PRK11778, PRK11778, putative inner membrane peptidase;
          Provisional.
          Length = 330

 Score = 27.5 bits (62), Expect = 5.5
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 6/50 (12%)

Query: 35 ERYDLMKNEKPDLMKEERLDLMKEEKLDWMKNEKRDLMKEEKPDLMKEKK 84
          E+Y  MK E    +K   LD  K+E   W K +K+   +E K    K K 
Sbjct: 47 EQYKEMKEE----LKAALLD--KKELKAWHKAQKKKEKQEAKAAKAKSKP 90


>gnl|CDD|236899 PRK11340, PRK11340, phosphodiesterase YaeI; Provisional.
          Length = 271

 Score = 27.1 bits (60), Expect = 6.5
 Identities = 23/93 (24%), Positives = 39/93 (41%), Gaps = 10/93 (10%)

Query: 15  HEMPDLMEEEKQELLDLMKDERYDLMKNEKPDL-MKEERLDLMKEEKLDWMKNEKRDLMK 73
           H+ P +  E+   + + +K     ++ N+   +     + +L+    L W    K     
Sbjct: 122 HDRP-VGTEKNHLIGETLKSAGITVLFNQATVIATPNRQFELVGTGDL-WAGQCKPPPAS 179

Query: 74  EEK-PDLMKEKKPDLKEIPPWKGVMKDERYDLM 105
           E   P L+    PD KE      VM+DE +DLM
Sbjct: 180 EANLPRLVLAHNPDSKE------VMRDEPWDLM 206


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.312    0.135    0.386 

Gapped
Lambda     K      H
   0.267   0.0722    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,019,511
Number of extensions: 1109761
Number of successful extensions: 1432
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1394
Number of HSP's successfully gapped: 148
Length of query: 203
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 111
Effective length of database: 6,857,034
Effective search space: 761130774
Effective search space used: 761130774
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 57 (25.7 bits)