BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2709
(295 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 158/283 (55%), Gaps = 46/283 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G++ V + +QS ++ Y+ N TP++ Y RHGESE N+ GRIGGD LSPRGR
Sbjct: 221 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE 280
Query: 68 YAAALARH-----------FNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
++ LA+ F +RT QT + E LNE+DAGVCE +YEE+
Sbjct: 281 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 340
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
QD +P EFA RDQDK RYRYP GESY D++QR+ PV++ELER++N+LV Q
Sbjct: 341 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQ-------- 392
Query: 177 SEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTT 236
+ + L + +FL+ K Y+K PL +T++KLT
Sbjct: 393 AVMRCL------LAYFLD-------KAAEELPYLK--------CPL------HTVLKLTP 425
Query: 237 SGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVPAH 279
Y +E I LN+A V+T+R +P++ + R +++AL TVPAH
Sbjct: 426 VAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPAH 468
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYD 214
+V++ + DY N ++A +DF ++E + YE+++ + + SY+K+ D
Sbjct: 169 IVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 220
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 191 bits (484), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 111/283 (39%), Positives = 158/283 (55%), Gaps = 46/283 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G++ V + +QS ++ Y+ N TP++ Y RHGESE N+ GRIGGD LSPRGR
Sbjct: 220 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE 279
Query: 68 YAAALARH-----------FNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
++ LA+ F +RT QT + E LNE+DAGVCE +YEE+
Sbjct: 280 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 339
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
QD +P EFA RDQDK RYRYP GESY D++QR+ PV++ELER++N+LV Q
Sbjct: 340 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQ-------- 391
Query: 177 SEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTT 236
+ + L + +FL+ K Y+K PL +T++KLT
Sbjct: 392 AVMRCL------LAYFLD-------KAAEELPYLK--------CPL------HTVLKLTP 424
Query: 237 SGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVPAH 279
Y +E I LN+A V+T+R +P++ + R +++AL TVPAH
Sbjct: 425 VAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPAH 467
Score = 31.2 bits (69), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYD 214
+V++ + DY N ++A +DF ++E + YE+++ + + SY+K+ D
Sbjct: 168 IVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 219
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 190 bits (483), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 111/284 (39%), Positives = 158/284 (55%), Gaps = 46/284 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G V + +QS + Y+ N TP++ Y RHGESE N+ GRIGGD+ LS RG+
Sbjct: 184 VGTRYMVNRVQDHIQSRTVYYLMNIHVTPRSIYLCRHGESELNIRGRIGGDSGLSVRGKQ 243
Query: 68 YAAALA-----------RHFNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
YA ALA + F +RT QT + E ALNE+DAGVCE +YEE+
Sbjct: 244 YAYALANFIQSQGISSLKVFTSRMKRTIQTAEALGVPYEQFKALNEIDAGVCEEMTYEEI 303
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
Q+ +P+EFA RDQDK RYRYP GESY D++QR+ PV++ELER++N+LV Q
Sbjct: 304 QEHYPEEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQ-------- 355
Query: 177 SEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTT 236
+ + L + +FL+ K Y+K PL +T++KLT
Sbjct: 356 AVMRCL------LAYFLD-------KSSEELPYLK--------CPL------HTVLKLTP 388
Query: 237 SGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVPAHF 280
Y +E I LN+ V+T+R++P++ + R ++AL TVPAH+
Sbjct: 389 VAYGCKVESIYLNVEAVNTHREKPENVDITREPEEALDTVPAHY 432
Score = 34.3 bits (77), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 28/43 (65%)
Query: 172 DYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYD 214
DY + EK L+DF ++E + Y+ ++ +L++ SY+K++D
Sbjct: 141 DYIDCDREKVLEDFLKRIECYEVNYQPLDEELDSHLSYIKIFD 183
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 187 bits (474), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 110/283 (38%), Positives = 157/283 (55%), Gaps = 46/283 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G++ V + +QS ++ Y+ N TP++ Y R GESE N+ GRIGGD LSPRGR
Sbjct: 221 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRAGESELNLKGRIGGDPGLSPRGRE 280
Query: 68 YAAALARH-----------FNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
++ LA+ F +RT QT + E LNE+DAGVCE +YEE+
Sbjct: 281 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 340
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
QD +P EFA RDQDK RYRYP GESY D++QR+ PV++ELER++N+LV Q
Sbjct: 341 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMELERQENVLVICHQ-------- 392
Query: 177 SEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTT 236
+ + L + +FL+ K Y+K PL +T++KLT
Sbjct: 393 AVMRCL------LAYFLD-------KAAEELPYLK--------CPL------HTVLKLTP 425
Query: 237 SGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVPAH 279
Y +E I LN+A V+T+R +P++ + R +++AL TVPAH
Sbjct: 426 VAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPAH 468
Score = 31.2 bits (69), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 14/52 (26%), Positives = 31/52 (59%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYD 214
+V++ + DY N ++A +DF ++E + YE+++ + + SY+K+ D
Sbjct: 169 IVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 220
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 157 bits (396), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 97/274 (35%), Positives = 147/274 (53%), Gaps = 47/274 (17%)
Query: 1 MAVYSVI-AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDA 59
+++ VI G V + +QS ++ Y+ N P+T Y RHGE+E N+ GRIGGD+
Sbjct: 210 LSLIKVIDVGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDS 269
Query: 60 DLSPRGRLYAAALARHFNEA-----------ARRTKQTVAGIHATSEAIPALNELDAGVC 108
LS RG+ +A+AL++ E + T QT + E ALNE+DAGVC
Sbjct: 270 GLSSRGKKFASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVC 329
Query: 109 EGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQ 168
E +YEE++D +P+E+A R+QDK YRYP GESY D++QR+ PV++ELER++N+LV
Sbjct: 330 EELTYEEIRDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLV---- 385
Query: 169 FNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYT 228
+ + L + +FL+ K Y+K PL
Sbjct: 386 -------ICHQAVLRCL---LAYFLD-------KSAEEMPYLKC--------PL------ 414
Query: 229 YTIIKLTTSGYKTHMEIIKLNIACVDTYRQQPKD 262
+T++KLT Y +E I LN+ V T+R++ +D
Sbjct: 415 HTVLKLTPVAYGCRVESIYLNVESVCTHRERSED 448
Score = 30.4 bits (67), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 31/53 (58%), Gaps = 1/53 (1%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINP-KLEARYSYVKVYD 214
++E+ + DYK+ + +A+DDF ++ + Y+ ++P K + S +KV D
Sbjct: 165 IMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDKCDRDLSLIKVID 217
>pdb|1C7Z|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C7Z|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|A Chain A, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C80|B Chain B, Regulatory Complex Of Fructose-2,6-Bisphosphatase
pdb|1C81|A Chain A, Michaelis Complex Of Fructose-2,6-Bisphosphatase
Length = 191
Score = 147 bits (371), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 95/139 (68%), Gaps = 11/139 (7%)
Query: 37 KTFYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALA-----------RHFNEAARRTKQ 85
++ Y RHGESE N+ GRIGGD+ LS RG+ YA ALA + + +RT Q
Sbjct: 2 RSIYLCRHGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQ 61
Query: 86 TVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDI 145
T + E ALNE+DAGVCE +YEE+Q+ +P+EFA RDQDK RYRYP GESY D+
Sbjct: 62 TAEALGVPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 121
Query: 146 MQRIRPVLLELEREDNLLV 164
+QR+ PV++ELER++N+LV
Sbjct: 122 VQRLEPVIMELERQENVLV 140
>pdb|1FBT|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|1FBT|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Length = 190
Score = 145 bits (367), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 72/139 (51%), Positives = 94/139 (67%), Gaps = 11/139 (7%)
Query: 37 KTFYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALA-----------RHFNEAARRTKQ 85
++ Y RHGESE N+ GRIGGD+ LS RG+ YA ALA + + +RT Q
Sbjct: 1 RSIYLCRHGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHXKRTIQ 60
Query: 86 TVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDI 145
T + E ALNE+DAGVCE +YEE+Q+ +P+EFA RDQDK RYRYP GESY D+
Sbjct: 61 TAEALGVPYEQWKALNEIDAGVCEEXTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 120
Query: 146 MQRIRPVLLELEREDNLLV 164
+QR+ PV+ ELER++N+LV
Sbjct: 121 VQRLEPVIXELERQENVLV 139
>pdb|1TIP|A Chain A, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
pdb|1TIP|B Chain B, The Bisphosphatase Domain Of The Bifunctional Rat Liver 6-
Phosphofructo-2-kinase/fructose-2,6-bisphosphatase
Length = 191
Score = 144 bits (362), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 71/139 (51%), Positives = 94/139 (67%), Gaps = 11/139 (7%)
Query: 37 KTFYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALA-----------RHFNEAARRTKQ 85
++ Y R GESE N+ GRIGGD+ LS RG+ YA ALA + + +RT Q
Sbjct: 2 RSIYLCRXGESELNLRGRIGGDSGLSARGKQYAYALANFIRSQGISSLKVWTSHMKRTIQ 61
Query: 86 TVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDI 145
T + E ALNE+DAGVCE +YEE+Q+ +P+EFA RDQDK RYRYP GESY D+
Sbjct: 62 TAEALGVPYEQWKALNEIDAGVCEEMTYEEIQEHYPEEFALRDQDKYRYRYPKGESYEDL 121
Query: 146 MQRIRPVLLELEREDNLLV 164
+QR+ PV++ELER++N+LV
Sbjct: 122 VQRLEPVIMELERQENVLV 140
>pdb|1H2E|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Phosphate
pdb|1H2F|A Chain A, Bacillus Stearothermophilus Phoe (Previously Known As
Yhfr) In Complex With Trivanadate
Length = 207
Score = 41.6 bits (96), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRG---------RLYAAALARHFNEAARRTKQT 86
T Y +RHGE+++NV R+ G D+ L+ +G RL A LA + + R +T
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 87 VAGIHATSEAIPA-----LNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGES 141
A I IP L E+ G EG +++E++ P F Q Y GE
Sbjct: 63 -AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGER 121
Query: 142 YVDIMQR 148
+ D+ QR
Sbjct: 122 FCDVQQR 128
>pdb|1EBB|A Chain A, Bacillus Stearothermophilus Yhfr
Length = 202
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 58/127 (45%), Gaps = 17/127 (13%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRG---------RLYAAALARHFNEAARRTKQT 86
T Y +RHGE+++NV R+ G D+ L+ +G RL A LA + + R +T
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 87 VAGIHATSEAIPA-----LNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGES 141
A I IP L E+ G EG +++E++ P F Q Y GE
Sbjct: 63 -AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGER 121
Query: 142 YVDIMQR 148
+ D+ QR
Sbjct: 122 FCDVQQR 128
>pdb|2A6P|A Chain A, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
pdb|2A6P|B Chain B, Structure Solution To 2.2 Angstrom And Functional
Characterisation Of The Open Reading Frame Rv3214 From
Mycobacterium Tuberculosis
Length = 208
Score = 33.5 bits (75), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 61/152 (40%), Gaps = 26/152 (17%)
Query: 39 FYFSRHGESEFNVLGR-IGG-DADLSPRGRLYAAALARHFNEAA-----------RRTKQ 85
RHGE+ ++ LGR GG + +L+ GR A + E RRT
Sbjct: 13 LLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSPRRRTLD 72
Query: 86 T--VAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYV 143
T +AG+ +E L E D G EG + ++++ P W + P GES
Sbjct: 73 TAKLAGL-TVNEVTGLLAEWDYGSYEGLTTPQIRESEPDWLVW------THGCPAGESVA 125
Query: 144 DIMQRI-RPVLLELER---EDNLLVEMLQFNK 171
+ R V L LE D L V F++
Sbjct: 126 QVNDRADSAVALALEHMSSRDVLFVSHGHFSR 157
>pdb|1K1Q|A Chain A, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1Q|B Chain B, Crystal Structure Of A Dinb Family Error Prone Dna
Polymerase From Sulfolobus Solfataricus
pdb|1K1S|A Chain A, Crystal Structure Of Dinb From Sulfolobus Solfataricus
Length = 354
Score = 31.2 bits (69), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP+ + + V VY G TS A++T Y KL G K M IIK
Sbjct: 12 FAQVEEVLNPQYKGKPLVVSVYSGRTKTSG-AVATANYEARKL---GVKAGMPIIK 63
>pdb|1IM4|A Chain A, Crystal Structure Of A Dinb Homolog (Dbh) Lesion Bypass
Dna Polymerase Catalytic Fragment From Sulfolobus
Solfataricus
Length = 221
Score = 31.2 bits (69), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP+ + + V VY G TS A++T Y KL G K M IIK
Sbjct: 17 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSG-AVATANYEARKL---GVKAGMPIIK 68
>pdb|1YFK|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YFK|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|A Chain A, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|B Chain B, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|C Chain C, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|D Chain D, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|E Chain E, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|F Chain F, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|G Chain G, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|H Chain H, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|I Chain I, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|J Chain J, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|K Chain K, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
pdb|1YJX|L Chain L, Crystal Structure Of Human B Type Phosphoglycerate
Mutase
Length = 262
Score = 30.8 bits (68), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 15/25 (60%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRG 65
RHGES +N+ R G DADLSP G
Sbjct: 10 RHGESAWNLENRFSGWYDADLSPAG 34
>pdb|2P9Y|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9Y|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 30.8 bits (68), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E M ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETMDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|4F50|A Chain A, Y-family Dna Polymerase Chimera Dbh-dbh-dpo4
Length = 361
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP+ + + V VY G TS A++T Y KL G K M IIK
Sbjct: 12 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSG-AVATANYEARKL---GVKAGMPIIK 63
>pdb|4F4W|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4W|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #1
pdb|4F4X|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dpo4 #2
Length = 361
Score = 30.8 bits (68), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP+ + + V VY G TS A++T Y KL G K M IIK
Sbjct: 12 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSG-AVATANYEARKL---GVKAGMPIIK 63
>pdb|4F4Y|A Chain A, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
pdb|4F4Y|B Chain B, Y-family Dna Polymerase Chimera Dbh-dpo4-dbh
Length = 362
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 7/64 (10%)
Query: 184 DFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHM 243
DF + F +V E +NP+ + + V VY G TS A++T Y KL G K M
Sbjct: 7 DFDY---FFAQVEEVLNPQYKGKPLVVCVYSGRTKTSG-AVATANYEARKL---GVKAGM 59
Query: 244 EIIK 247
IIK
Sbjct: 60 PIIK 63
>pdb|3BQ0|A Chain A, Pre-insertion Binary Complex Of Dbh Dna Polymerase
pdb|3BQ1|A Chain A, Insertion Ternary Complex Of Dbh Dna Polymerase
pdb|3BQ2|A Chain A, Post-Insertion Binary Complex Of Dbh Dna Polymerase
pdb|4HYK|A Chain A, Dbh Ternary Complex (substrates Partially Disordered)
Length = 354
Score = 30.4 bits (67), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP+ + + V VY G TS A++T Y KL G K M IIK
Sbjct: 12 FAQVEEVLNPQYKGKPLVVCVYSGRTKTSG-AVATANYEARKL---GVKAGMPIIK 63
>pdb|2P79|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P79|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGAMWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P77|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P77|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAEMA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P6O|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P6O|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETMWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2OWD|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2OWD|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLMRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2OWE|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRMYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2EKZ|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (l52m)
pdb|2EKZ|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (l52m)
Length = 177
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDMLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|1V37|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|1V37|B Chain B, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|1V7Q|A Chain A, Crystal Structure Of Phosphoglycerate Mutase From Thermus
Thermophilus Hb8
pdb|2HIA|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2PA0|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2PA0|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPMTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P30|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P2Z|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P2Z|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2ENU|A Chain A, Mutant L121m Structure Of Tthb049 From Thermus
Thermophilus Hb8
pdb|2ENU|B Chain B, Mutant L121m Structure Of Tthb049 From Thermus
Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|3KKK|A Chain A, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|B Chain B, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|C Chain C, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
pdb|3KKK|D Chain D, Y92c Catalytic Residue Mutant Of Phosphoglycerate Mutase
From Plasmodium Falciparum
Length = 258
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 43/112 (38%), Gaps = 22/112 (19%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNE-----------AARRTK 84
T RHGES +N + G D LS +G A A ++ E +R
Sbjct: 13 TLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAI 72
Query: 85 QTVAGIHATSEA--IPA-----LNELDAGVCEGYSYEEMQDKFPQEFA--WR 127
T + T++ +P LNE G +G + E K+ +E WR
Sbjct: 73 CTAWNVLKTADLLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWR 124
>pdb|2J4R|A Chain A, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
pdb|2J4R|B Chain B, Structural Study Of The Aquifex Aeolicus Ppx-Gppa Enzyme
Length = 308
Score = 29.3 bits (64), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 32/129 (24%)
Query: 159 EDNLLVEMLQFNKDYKNMSEEKALDDFQ----------HKMEHFLE--------VYETIN 200
+++ + E +Q K+YK + +E ++ + E FLE V E I
Sbjct: 54 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 113
Query: 201 PKLEARYSYVKVY-----DGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIKLNIACVDT 255
P+ E RY+Y+ V +GE + Y K GYK E+I L I V+
Sbjct: 114 PEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK----GYKVR-EVISLPIGIVNL 168
Query: 256 ----YRQQP 260
++Q P
Sbjct: 169 TETFFKQDP 177
>pdb|2P78|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P78|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGAMEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|3UID|A Chain A, Crystal Structure Of Protein Ms6760 From Mycobacterium
Smegmatis
pdb|3UID|B Chain B, Crystal Structure Of Protein Ms6760 From Mycobacterium
Smegmatis
Length = 168
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Query: 58 DADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYS 112
D D +P L + F E T+ T G +A++EA+ + LD GV EG S
Sbjct: 97 DEDFNPNTDLPVSTNVYTFTEHDGGTRATYVGTYASAEALQQV--LDMGVIEGAS 149
>pdb|2EKB|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (L19m)
pdb|2EKB|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (L19m)
Length = 177
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRMLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P2Y|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWMVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|1T6C|A Chain A, Structural Characterization Of The PpxGPPA PROTEIN FAMILY:
CRYSTAL Structure Of The Aquifex Aeolicus Family Member
Length = 315
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 32/129 (24%)
Query: 159 EDNLLVEMLQFNKDYKNMSEEKALDDFQ----------HKMEHFLE--------VYETIN 200
+++ + E +Q K+YK + +E ++ + E FLE V E I
Sbjct: 59 QEDRIEETIQVLKEYKKLIDEFKVERVKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 118
Query: 201 PKLEARYSYVKVY-----DGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIKLNIACVDT 255
P+ E RY+Y+ V +GE + Y K GYK E+I L I V+
Sbjct: 119 PEQEGRYAYLAVAYSLKPEGEVCVVDQGGGSTEYVFGK----GYKVR-EVISLPIGIVNL 173
Query: 256 ----YRQQP 260
++Q P
Sbjct: 174 TETFFKQDP 182
>pdb|2EOA|A Chain A, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
pdb|2EOA|B Chain B, Structural Study Of Project Id Tthb049 From Thermus
Thermophilus Hb8 (W85h)
Length = 177
Score = 28.9 bits (63), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALHETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P75|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P75|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.9 bits (63), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 51/124 (41%), Gaps = 22/124 (17%)
Query: 39 FYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALARHFNEA-------------ARRTKQ 85
+ RHGE+ +N GR+ G DL A AR A ARRT +
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAE--GEAQARRLKGAMPSLPAFSSDLLRARRTAE 60
Query: 86 TVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDI 145
+AG + P L E+ G EG +E + ++ +E R Q + P GES
Sbjct: 61 -LAGF--SPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAF 113
Query: 146 MQRI 149
+R+
Sbjct: 114 QERV 117
>pdb|1FZT|A Chain A, Solution Structure And Dynamics Of An Open B-Sheet,
Glycolytic Enzyme-Monomeric 23.7 Kda Phosphoglycerate
Mutase From Schizosaccharomyces Pombe
Length = 211
Score = 28.9 bits (63), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 56/140 (40%), Gaps = 28/140 (20%)
Query: 36 PKTFYFSRHGESEFNVLGRIGG--DADLSPRG-------------RLYAAALARHFNEAA 80
P +RHGESE+N L G D LS G R Y +A F A
Sbjct: 7 PNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIA--FTSAL 64
Query: 81 RRTKQTVAGI-----HATSEAIPA--LNELDAGVCEGYSYEEMQDKFPQEFA--WRDQDK 131
+R ++T I E I + LNE G +G + ++ + K+ E WR
Sbjct: 65 QRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRRSYD 124
Query: 132 LRYRYPWGESYVDIMQRIRP 151
+ P GES D +R+ P
Sbjct: 125 I--APPNGESLKDTAERVLP 142
>pdb|2P9Z|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9Z|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.9 bits (63), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLHPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|2P6M|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P6M|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.9 bits (63), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 26/126 (20%)
Query: 39 FYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA-------------ARRT 83
+ RHGE+ +N GR+ G D L+ G A AR A ARRT
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDMPLTAEGE----AQARRLKGALPSLPAFSSDLLRARRT 58
Query: 84 KQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYV 143
+ +AG + P L E+ G EG +E + ++ +E R Q + P GES
Sbjct: 59 AE-LAGF--SPRLYPELREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLS 111
Query: 144 DIMQRI 149
+R+
Sbjct: 112 AFQERV 117
>pdb|1T6D|A Chain A, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
pdb|1T6D|B Chain B, Miras Phasing Of The Aquifex Aeolicus PpxGPPA PHOSPHATASE:
CRYSTAL Structure Of The Type Ii Variant
Length = 315
Score = 28.5 bits (62), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 53/129 (41%), Gaps = 32/129 (24%)
Query: 159 EDNLLVEMLQFNKDYKNMSEEKALDDFQ----------HKMEHFLE--------VYETIN 200
+++ + E +Q K+YK + +E ++ + E FLE V E I
Sbjct: 59 QEDRIEETIQVLKEYKKLIDEFKVERXKAVATEAIRRAKNAEEFLERVKREVGLVVEVIT 118
Query: 201 PKLEARYSYVKVY-----DGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIKLNIACVDT 255
P+ E RY+Y+ V +GE + Y K GYK E+I L I V+
Sbjct: 119 PEQEGRYAYLAVAYSLKPEGEVXVVDQGGGSTEYVFGK----GYKVR-EVISLPIGIVNL 173
Query: 256 ----YRQQP 260
++Q P
Sbjct: 174 TETFFKQDP 182
>pdb|2P9F|A Chain A, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
pdb|2P9F|B Chain B, Crystal Structure Of Tthb049 From Thermus Thermophilus Hb8
Length = 177
Score = 28.5 bits (62), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 49/119 (41%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P + E+ G EG +E + ++ +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPEMREIHFGALEGALWETLDPRY-KEALLRFQG---FHPPGGESLSAFQERV 117
>pdb|4ETP|A Chain A, C-Terminal Motor And Motor Homology Domain Of Kar3vik1
Fused To A Synthetic Heterodimeric Coiled Coil
Length = 403
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 81/213 (38%), Gaps = 37/213 (17%)
Query: 90 IHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESY---VDIM 146
I A E I AL E A + E E+ K E +++ R + + + +
Sbjct: 5 IAALKEKIAALKEKIAALKEKIKDTELGMKELNEILIKEETVRRTLHNELQELRGNIRVY 64
Query: 147 QRIRPVLLELEREDNLLVEMLQFNKDYKNMSEE----------------KALDDFQHKME 190
RIRP L LE D L+ + +F+ + S E K D ++
Sbjct: 65 LRIRPALKNLENSDTSLINVNEFDDNSGVQSMEVTKIQNTAQVHEFKFDKIFDQQDTNVD 124
Query: 191 HFLEVYETINPKLE----ARYSYVKVYDGENTTS--------PLALSTYTYTIIKLTTSG 238
F EV + + L+ A ++Y + G+ T P +S I KL T G
Sbjct: 125 VFKEVGQLVQSSLDGYNVAIFAYGQTGSGKTFTMLNPGDGIIPSTISHIFNWINKLKTKG 184
Query: 239 --YKTHMEIIKL-NIACVDTYR---QQPKDCSV 265
YK + E I++ N VD R +D S+
Sbjct: 185 WDYKVNAEFIEIYNENIVDLLRSDNNNKEDTSI 217
>pdb|3S5N|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase
Length = 304
Score = 28.1 bits (61), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 VIAGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGES-----EFNV-LGRIGGDA 59
V+ G N F+ + EV+S + P + ES E V + ++G DA
Sbjct: 50 VVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADA 109
Query: 60 DL--SP---RGRLYAAALARHFNEAA 80
+ +P RGR+ +AAL H+ + A
Sbjct: 110 AMVVTPCYYRGRMSSAALIHHYTKVA 135
>pdb|3S5O|A Chain A, Crystal Structure Of Human 4-Hydroxy-2-Oxoglutarate
Aldolase Bound To Pyruvate
Length = 307
Score = 28.1 bits (61), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 6 VIAGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGES-----EFNV-LGRIGGDA 59
V+ G N F+ + EV+S + P + ES E V + ++G DA
Sbjct: 53 VVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVGADA 112
Query: 60 DL--SP---RGRLYAAALARHFNEAA 80
+ +P RGR+ +AAL H+ + A
Sbjct: 113 AMVVTPCYYRGRMSSAALIHHYTKVA 138
>pdb|2ENW|A Chain A, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
pdb|2ENW|B Chain B, Mutant Y92h Structure Of Tthb049 From Thermus Thermophilus
Hb8
Length = 177
Score = 27.7 bits (60), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
Query: 39 FYFSRHGESEFNVLGRIGGDADL------SPRGRLYAAALAR--HFNEAARRTKQTVAGI 90
+ RHGE+ +N GR+ G DL + R AL F+ R ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRI 149
+ P L E+ G EG +E + + +E R Q + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRH-KEALLRFQG---FHPPGGESLSAFQERV 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,906,794
Number of Sequences: 62578
Number of extensions: 374874
Number of successful extensions: 958
Number of sequences better than 100.0: 54
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 67
length of query: 295
length of database: 14,973,337
effective HSP length: 98
effective length of query: 197
effective length of database: 8,840,693
effective search space: 1741616521
effective search space used: 1741616521
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.3 bits)