RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2709
(295 letters)
>gnl|CDD|214859 smart00855, PGAM, Phosphoglycerate mutase family. Phosphoglycerate
mutase (PGAM) and bisphosphoglycerate mutase (BPGM) are
structurally related enzymes that catalyse reactions
involving the transfer of phospho groups between the
three carbon atoms of phosphoglycerate... Both enzymes
can catalyse three different reactions with different
specificities, the isomerization of 2-phosphoglycerate
(2-PGA) to 3-phosphoglycerate (3-PGA) with
2,3-diphosphoglycerate (2,3-DPG) as the primer of the
reaction, the synthesis of 2,3-DPG from 1,3-DPG with
3-PGA as a primer and the degradation of 2,3-DPG to
3-PGA (phosphatase activity). In mammals, PGAM is a
dimeric protein with two isoforms, the M (muscle) and B
(brain) forms. In yeast, PGAM is a tetrameric protein.
Length = 158
Score = 103 bits (259), Expect = 3e-27
Identities = 45/140 (32%), Positives = 63/140 (45%), Gaps = 18/140 (12%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA------------ARRT 83
Y RHGE+E+N GR+ G D L+ GR A AL R +R
Sbjct: 1 RLYLIRHGETEWNREGRLYGDTDVPLTELGRAQAEALGRLLASLLLPRFDVVYSSPLKRA 60
Query: 84 KQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQE---FAWRDQDKLRYRYPWGE 140
+QT A A + +P L E D G EG +++E+ K+P+E D P GE
Sbjct: 61 RQT-AEALAIALGLPGLRERDFGAWEGLTWDEIAAKYPEEYLAAWRDPYDPAPPAPPGGE 119
Query: 141 SYVDIMQRIRPVLLELERED 160
S D+++R+ P L EL
Sbjct: 120 SLADLVERVEPALDELIATA 139
>gnl|CDD|223483 COG0406, phoE, Broad specificity phosphatase PhoE and related
phosphatases [General function prediction only].
Length = 208
Score = 101 bits (252), Expect = 9e-26
Identities = 48/149 (32%), Positives = 69/149 (46%), Gaps = 20/149 (13%)
Query: 36 PKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHF------NEAA-----RR 82
Y RHGE+E+NV GR+ G D+ L+ GR A ALA +A +R
Sbjct: 2 MMRLYLVRHGETEWNVEGRLQGWTDSPLTEEGRAQAEALAERLAARDIGFDAIYSSPLKR 61
Query: 83 TKQTVA----GIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPW 138
+QT + E L E+D G EG + +E+ ++ P+E A D P
Sbjct: 62 AQQTAEPLAEELGLPLEVDDRLREIDFGDWEGLTIDELAEEPPEELAAWLADPYLAPPPG 121
Query: 139 GESYVDIMQRIRPVLLELERE---DNLLV 164
GES D+ +R+ L EL R +N+LV
Sbjct: 122 GESLADVSKRVVAALAELLRSPPGNNVLV 150
>gnl|CDD|215845 pfam00300, His_Phos_1, Histidine phosphatase superfamily (branch
1). The histidine phosphatase superfamily is so named
because catalysis centres on a conserved His residue
that is transiently phosphorylated during the catalytic
cycle. Other conserved residues contribute to a
'phosphate pocket' and interact with the phospho group
of substrate before, during and after its transfer to
the His residue. Structure and sequence analyses show
that different families contribute different additional
residues to the 'phosphate pocket' and, more
surprisingly, differ in the position, in sequence and in
three dimensions, of a catalytically essential acidic
residue. The superfamily may be divided into two main
branches. The larger branch 1 contains a wide variety of
catalytic functions, the best known being fructose
2,6-bisphosphatase (found in a bifunctional protein with
2-phosphofructokinase) and cofactor-dependent
phosphoglycerate mutase. The latter is an unusual
example of a mutase activity in the superfamily: the
vast majority of members appear to be phosphatases. The
bacterial regulatory protein phosphatase SixA is also in
branch 1 and has a minimal, and possible ancestral-like
structure, lacking the large domain insertions that
contribute to binding of small molecules in branch 1
members.
Length = 154
Score = 95.2 bits (237), Expect = 3e-24
Identities = 44/145 (30%), Positives = 65/145 (44%), Gaps = 19/145 (13%)
Query: 38 TFYFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEA---------ARRTKQT 86
Y RHGE+E+N + R+ GD D L+ GR A AL + R QT
Sbjct: 1 RLYLVRHGETEWN-VERLQGDTDSPLTELGREQARALGKRLKGIPFDRIYSSPLLRAIQT 59
Query: 87 VAGIHATSEA----IPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESY 142
+ P L E D G EG +++E++ +FP+E +D +R P GES
Sbjct: 60 AEILAEALGLPIIVDPRLRERDFGDWEGLTFDEIKAEFPEELRAWLEDPADFRPPGGESL 119
Query: 143 VDIMQRIRPVLLEL---EREDNLLV 164
D+ +R+ L EL N+L+
Sbjct: 120 ADVYERVEAALEELLAKHPGGNVLI 144
>gnl|CDD|234131 TIGR03162, ribazole_cobC, alpha-ribazole phosphatase. Members of
this protein family include the known CobC protein of
Salmonella and Eschichia coli species, and homologous
proteins found in cobalamin biosynthesis regions in
other bacteria. This protein is alpha-ribazole
phosphatase (EC 3.1.3.73) and, like many phosphatases,
can be closely related in sequence to other phosphatases
with different functions. Close homologs excluded from
this model include proteins with duplications, so this
model is built in -g mode to suppress hits to those
proteins [Biosynthesis of cofactors, prosthetic groups,
and carriers, Heme, porphyrin, and cobalamin].
Length = 177
Score = 75.4 bits (186), Expect = 1e-16
Identities = 42/142 (29%), Positives = 59/142 (41%), Gaps = 18/142 (12%)
Query: 40 YFSRHGESEFNVLGRIG-GDADLSPRGRLYAAALARHFNEA------------ARRTKQT 86
Y RHGE++ N G D L+ G AAAL + R +
Sbjct: 2 YLIRHGETDVNAGLCYGQTDVPLAESGEEQAAALREKLADVPFDAVYSSPLSRCRELAEI 61
Query: 87 VAGIHATS-EAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDI 145
+A L E+D G EG S++E+ + +P+ AW D R P GES+ D
Sbjct: 62 LAERRGLPIIKDDRLREMDFGDWEGRSWDEIPEAYPELDAWA-ADWQHARPPGGESFADF 120
Query: 146 MQRIRPVLLEL---EREDNLLV 164
QR+ L EL DN+L+
Sbjct: 121 YQRVSEFLEELLKAHEGDNVLI 142
>gnl|CDD|132718 cd07067, HP_PGM_like, Histidine phosphatase domain found in
phosphoglycerate mutases and related proteins, mostly
phosphatases; contains a His residue which is
phosphorylated during the reaction. Subgroup of the
catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This subgroup
contains cofactor-dependent and cofactor-independent
phosphoglycerate mutases (dPGM, and BPGM respectively),
fructose-2,6-bisphosphatase (F26BP)ase, Sts-1, SixA, and
related proteins. Functions include roles in metabolism,
signaling, or regulation, for example, F26BPase affects
glycolysis and gluconeogenesis through controlling the
concentration of F26BP; BPGM controls the concentration
of 2,3-BPG (the main allosteric effector of hemoglobin
in human blood cells); human Sts-1 is a T-cell
regulator; Escherichia coli Six A participates in the
ArcB-dependent His-to-Asp phosphorelay signaling system.
Deficiency and mutation in many of the human members
result in disease, for example erythrocyte BPGM
deficiency is a disease associated with a decrease in
the concentration of 2,3-BPG.
Length = 153
Score = 60.8 bits (148), Expect = 2e-11
Identities = 26/83 (31%), Positives = 32/83 (38%), Gaps = 18/83 (21%)
Query: 38 TFYFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEA-----------ARRTK 84
Y RHGESE+N GR G D L+ +GR A AL + E +R
Sbjct: 1 RLYLVRHGESEWNAEGRFQGWTDVPLTEKGREQARALGKRLKELGIKFDRIYSSPLKRAI 60
Query: 85 QTVAGIHATSEAIP-----ALNE 102
QT I +P L E
Sbjct: 61 QTAEIILEELPGLPVEVDPRLRE 83
>gnl|CDD|180903 PRK07238, PRK07238, bifunctional RNase H/acid phosphatase;
Provisional.
Length = 372
Score = 58.8 bits (143), Expect = 7e-10
Identities = 44/148 (29%), Positives = 63/148 (42%), Gaps = 31/148 (20%)
Query: 35 TPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAAR----------- 81
TP RHG++E +V R G + +L+ GR AAA AR+ AAR
Sbjct: 170 TPTRLLLLRHGQTELSVQRRYSGRGNPELTEVGRRQAAAAARYL--AARGGIDAVVSSPL 227
Query: 82 -RTKQTVAGIHATSEA-------IPALNELDAGVCEGYSYEEMQDKFPQEF-AW-RDQDK 131
R + T A A ++A L E D G EG ++ E ++ P+ AW D
Sbjct: 228 QRARDTAA---AAAKALGLDVTVDDDLIETDFGAWEGLTFAEAAERDPELHRAWLADTS- 283
Query: 132 LRYRYPWGESYVDIMQRIRPVLLELERE 159
P GES+ + +R+R L E
Sbjct: 284 --VAPPGGESFDAVARRVRRARDRLIAE 309
>gnl|CDD|132716 cd07040, HP, Histidine phosphatase domain found in a functionally
diverse set of proteins, mostly phosphatases; contains a
His residue which is phosphorylated during the reaction.
Catalytic domain of a functionally diverse set of
proteins, most of which are phosphatases. The conserved
catalytic core of this domain contains a His residue
which is phosphorylated in the reaction. This set of
proteins includes cofactor-dependent and
cofactor-independent phosphoglycerate mutases (dPGM, and
BPGM respectively), fructose-2,6-bisphosphatase
(F26BP)ase, Sts-1, SixA, histidine acid phosphatases,
phytases, and related proteins. Functions include roles
in metabolism, signaling, or regulation, for example
F26BPase affects glycolysis and gluconeogenesis through
controlling the concentration of F26BP; BPGM controls
the concentration of 2,3-BPG (the main allosteric
effector of hemoglobin in human blood cells); human
Sts-1 is a T-cell regulator; Escherichia coli Six A
participates in the ArcB-dependent His-to-Asp
phosphorelay signaling system; phytases scavenge
phosphate from extracellular sources. Deficiency and
mutation in many of the human members result in disease,
for example erythrocyte BPGM deficiency is a disease
associated with a decrease in the concentration of
2,3-BPG. Clinical applications include the use of
prostatic acid phosphatase (PAP) as a serum marker for
prostate cancer. Agricultural applications include the
addition of phytases to animal feed.
Length = 153
Score = 51.6 bits (124), Expect = 3e-08
Identities = 22/99 (22%), Positives = 28/99 (28%), Gaps = 13/99 (13%)
Query: 38 TFYFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEA-----------ARRTK 84
Y RHGE E N GR G D L+ +GR A L + E +R
Sbjct: 1 VLYLVRHGEREPNAEGRFTGWGDGPLTEKGRQQARELGKALRERYIKFDRIYSSPLKRAI 60
Query: 85 QTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQE 123
QT I + E +
Sbjct: 61 QTAEIILEGLFEGLPVEVDPRARVLNALLELLARHLLDG 99
>gnl|CDD|184966 PRK15004, PRK15004, alpha-ribazole phosphatase; Provisional.
Length = 199
Score = 50.0 bits (120), Expect = 2e-07
Identities = 34/145 (23%), Positives = 54/145 (37%), Gaps = 20/145 (13%)
Query: 39 FYFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEAA---------RRTKQT- 86
+ RHGE++ NV G G A L+ RG A L + R + T
Sbjct: 3 LWLVRHGETQANVDGLYSGHAPTPLTARGIEQAQNLHTLLRDVPFDLVLCSELERAQHTA 62
Query: 87 ---VAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEF-AWRDQDKLRYRYPWGESY 142
++ IP LNE+ G E + ++ + + + AW + D GE +
Sbjct: 63 RLVLSDRQLPVHIIPELNEMFFGDWEMRHHRDLMQEDAENYAAWCN-DWQHAIPTNGEGF 121
Query: 143 VDIMQRIRPV---LLELEREDNLLV 164
QR+ L + NLL+
Sbjct: 122 QAFSQRVERFIARLSAFQHYQNLLI 146
>gnl|CDD|179583 PRK03482, PRK03482, phosphoglycerate mutase; Provisional.
Length = 215
Score = 48.2 bits (115), Expect = 9e-07
Identities = 40/133 (30%), Positives = 60/133 (45%), Gaps = 23/133 (17%)
Query: 40 YFSRHGESEFNVLGRIGGDAD--LSPRGRLYA---AALARH------FNEAARRTKQTVA 88
Y RHGE+++N RI G +D L+ +G A A A+ + RT++T A
Sbjct: 5 YLVRHGETQWNAERRIQGQSDSPLTAKGEQQAMQVAERAKELGITHIISSDLGRTRRT-A 63
Query: 89 GIHATS---EAI--PALNELDAGVCEGYSYEEMQDKFPQEFAWRDQ---DKLRYRYPWGE 140
I A + + I P L EL+ GV E + + +E WR Q + R P GE
Sbjct: 64 EIIAQACGCDIIFDPRLRELNMGVLEKRHIDSLT---EEEEGWRRQLVNGTVDGRIPEGE 120
Query: 141 SYVDIMQRIRPVL 153
S ++ R+ L
Sbjct: 121 SMQELSDRMHAAL 133
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 46.0 bits (109), Expect = 1e-05
Identities = 27/79 (34%), Positives = 41/79 (51%)
Query: 9 GENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRLY 68
+ ++ I G + S + + N PTP Y +R GE + GRIGG++ L+ RGR Y
Sbjct: 392 TQTFSLNNISGWMPSRLAYMLHNLNPTPMNLYLTRAGEYVDLLSGRIGGNSRLTERGRAY 451
Query: 69 AAALARHFNEAARRTKQTV 87
+ AL +F + T TV
Sbjct: 452 SRALFEYFQKEISTTSFTV 470
Score = 28.3 bits (63), Expect = 5.9
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 179 EKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGE 216
E +D + +E VY+++NP + +Y+++ D +
Sbjct: 356 EDFVDRYYEVIEQLEAVYKSLNPVTDCDLTYIRIEDTQ 393
>gnl|CDD|172065 PRK13463, PRK13463, phosphatase PhoE; Provisional.
Length = 203
Score = 42.7 bits (100), Expect = 6e-05
Identities = 34/146 (23%), Positives = 71/146 (48%), Gaps = 20/146 (13%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARH---------FNEAARRTKQT 86
T Y +RHGE+E+NV R+ G ++ L+ G L A L ++ + RT T
Sbjct: 4 TVYVTRHGETEWNVAKRMQGRKNSALTENGILQAKQLGERMKDLSIHAIYSSPSERTLHT 63
Query: 87 VAGIHATSEAIPALN-----ELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGES 141
I + IP + E++ G+ EG + ++++ ++P + + ++ GE+
Sbjct: 64 AELIKGERD-IPIIADEHFYEINMGIWEGQTIDDIERQYPDDIQLFWNEPHLFQSTSGEN 122
Query: 142 YVDIMQRI---RPVLLELEREDNLLV 164
+ + +R+ +LLE + +++L+
Sbjct: 123 FEAVHKRVIEGMQLLLEKHKGESILI 148
>gnl|CDD|139587 PRK13462, PRK13462, acid phosphatase; Provisional.
Length = 203
Score = 40.6 bits (95), Expect = 4e-04
Identities = 36/141 (25%), Positives = 56/141 (39%), Gaps = 26/141 (18%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQT--V 87
RHGE+E++ GR G + +L+ GR A + E RR T +
Sbjct: 12 RHGETEWSKSGRHTGRTELELTETGRTQAELAGQALGELELDDPLVISSPRRRALDTAKL 71
Query: 88 AGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQ 147
AG+ E L E D G EG + ++++ P W + P GES + +
Sbjct: 72 AGL-TVDEVSGLLAEWDYGSYEGLTTPQIRESEPDWLVW------THGCPGGESVAQVNE 124
Query: 148 R----IRPVLLELEREDNLLV 164
R + L +E D + V
Sbjct: 125 RADRAVALALEHMESRDVVFV 145
>gnl|CDD|223661 COG0588, GpmA, Phosphoglycerate mutase 1 [Carbohydrate transport
and metabolism].
Length = 230
Score = 37.6 bits (88), Expect = 0.004
Identities = 38/171 (22%), Positives = 63/171 (36%), Gaps = 36/171 (21%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGR---LYAAALARH--------FNEAARRTKQTVAG 89
RHG+SE+N G D DL+ +G A L + + +R +T+
Sbjct: 8 RHGQSEWNKENLFTGWVDVDLTEKGISEAKAAGKLLKEEGLEFDIAYTSVLKRAIKTLNI 67
Query: 90 IHATS--EAIP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR--------DQDKL 132
+ S IP LNE G +G + E K+ +E WR +K
Sbjct: 68 VLEESDQLWIPVIKSWRLNERHYGALQGLNKAETAAKYGEEQVLIWRRSYDIPPPKLEKD 127
Query: 133 RYRYPWGE-SYVDIMQRIRPVLLELEREDNLLVEMLQFNKD--YKNMSEEK 180
R P + Y + P+ L+ + + +L + +D N+ K
Sbjct: 128 DERSPHRDRRYAHLDIGGLPLTESLK---DTVERVLPYWEDDIAPNLKSGK 175
>gnl|CDD|216591 pfam01591, 6PF2K, 6-phosphofructo-2-kinase. This enzyme occurs as
a bifunctional enzyme with fructose-2,6-bisphosphatase.
The bifunctional enzyme catalyzes both the synthesis and
degradation of fructose-2,6-bisphosphate, a potent
regulator of glycolysis. This enzyme contains a P-loop
motif.
Length = 219
Score = 36.5 bits (85), Expect = 0.008
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 172 DYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDG 215
DYK E+A+DDF ++E + + YE ++ E SY+KV D
Sbjct: 149 DYKGKPPEEAIDDFMKRIECYEKQYEPLDEHDED-LSYIKVIDV 191
>gnl|CDD|184516 PRK14115, gpmA, phosphoglyceromutase; Provisional.
Length = 247
Score = 35.2 bits (82), Expect = 0.021
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA 79
RHGES++N R G D DLS +G A A + E
Sbjct: 7 RHGESQWNKENRFTGWTDVDLSEKGVSEAKAAGKLLKEE 45
>gnl|CDD|213596 TIGR01258, pgm_1, phosphoglycerate mutase, BPG-dependent, family
1. Most members of this family are phosphoglycerate
mutase (EC 5.4.2.1). This enzyme interconverts
2-phosphoglycerate and 3-phosphoglycerate. The enzyme
is transiently phosphorylated on an active site
histidine by 2,3-diphosphoglyerate, which is both
substrate and product. Some members of this family have
are phosphoglycerate mutase as a minor activity and act
primarily as a bisphoglycerate mutase, interconverting
2,3-diphosphoglycerate and 1,3-diphosphoglycerate (EC
5.4.2.4). This model is designated as a subfamily for
this reason. The second and third paralogs in S.
cerevisiae are somewhat divergent and apparently
inactive (see PUBMED:9544241) but are also part of this
subfamily phylogenetically.
Length = 245
Score = 32.0 bits (73), Expect = 0.26
Identities = 15/39 (38%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA 79
RHGESE+N L G D LS +G+ A E
Sbjct: 7 RHGESEWNALNLFTGWVDVKLSEKGQQEAKRAGELLKEE 45
>gnl|CDD|163560 TIGR03848, MSMEG_4193, probable phosphomutase, MSMEG_4193 family.
A three-gene system broadly conserved among the
Actinobacteria includes MSMEG_4193 and homologs, a
subgroup among the larger phosphoglycerate mutase family
protein (pfam00300). Another member of the trio is a
probable kinase, related to phosphatidylinositol
kinases; that context supports the hypothesis that this
protein acts as a phosphomutase.
Length = 204
Score = 30.8 bits (70), Expect = 0.52
Identities = 27/89 (30%), Positives = 31/89 (34%), Gaps = 16/89 (17%)
Query: 38 TFYFSRHGESEFNVLGRIGGDA---DLSPRGRLYAAALARHFNEAA---------RRTKQ 85
T RHG S N G + G DL RGR AAALA + R ++
Sbjct: 1 TVILVRHGRSTANTAGTLAGRTPGVDLDERGREQAAALAERLADLPIAAIVSSPLERCRE 60
Query: 86 TVAGIHATSEAIPA----LNELDAGVCEG 110
T I P L E D G G
Sbjct: 61 TAEPIAEARGLPPRVDERLGECDYGDWTG 89
>gnl|CDD|236408 PRK09200, PRK09200, preprotein translocase subunit SecA; Reviewed.
Length = 790
Score = 31.4 bits (72), Expect = 0.61
Identities = 14/52 (26%), Positives = 21/52 (40%)
Query: 144 DIMQRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEV 195
DI+ + V LE E+ LL + L Y+N+S + EV
Sbjct: 629 DIVILMIDVYLEAVAEEYLLEKSLLEEWIYENLSFQLNEILSNTNFPDKKEV 680
>gnl|CDD|179251 PRK01216, PRK01216, DNA polymerase IV; Validated.
Length = 351
Score = 31.3 bits (71), Expect = 0.61
Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 192 FLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIK 247
F +V E +NP L+ + V VY G S A++T Y KL G K M I++
Sbjct: 12 FAQVEEVLNPSLKGKPVVVCVYSGRFEDSG-AVATANYEARKL---GIKAGMPIVE 63
>gnl|CDD|167205 PRK01295, PRK01295, phosphoglyceromutase; Provisional.
Length = 206
Score = 30.4 bits (69), Expect = 0.74
Identities = 38/137 (27%), Positives = 54/137 (39%), Gaps = 36/137 (26%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA--------------ARRTKQT 86
RHG+SE+N+ G D DL+ +G A A R A A+ T Q
Sbjct: 9 RHGQSEWNLKNLFTGWRDPDLTEQGVAEAKAAGRKLKAAGLKFDIAFTSALSRAQHTCQL 68
Query: 87 V------AGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQE--FAWRDQDKLRYRY-- 136
+ G+ + ALNE D G G + ++ + K+ +E WR Y
Sbjct: 69 ILEELGQPGLETIRD--QALNERDYGDLSGLNKDDARAKWGEEQVHIWRRS------YDV 120
Query: 137 --PWGESYVDIMQRIRP 151
P GES D R+ P
Sbjct: 121 PPPGGESLKDTGARVLP 137
>gnl|CDD|184519 PRK14120, gpmA, phosphoglyceromutase; Provisional.
Length = 249
Score = 30.0 bits (68), Expect = 1.2
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGR 66
RHGESE+N G D DL+ +G
Sbjct: 11 RHGESEWNAKNLFTGWVDVDLTEKGE 36
>gnl|CDD|191935 pfam08064, UME, UME (NUC010) domain. This domain is characteristic
of UVSB PI-3 kinase, MEI-41 and ESR1.
Length = 107
Score = 28.7 bits (65), Expect = 1.4
Identities = 12/46 (26%), Positives = 19/46 (41%), Gaps = 9/46 (19%)
Query: 243 MEIIKLNIACVDTYRQQPKDCSVLRST--QDALRTVPAHFDTLNMW 286
E+IKL + + R P+ + L+S LR + L W
Sbjct: 40 EELIKLGGKHISSAR--PQIMACLQSALEIPELR-----SEALRCW 78
>gnl|CDD|216073 pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.
Length = 420
Score = 30.2 bits (69), Expect = 1.5
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 5/67 (7%)
Query: 139 GESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALD----DFQHKMEHFLE 194
G +Y D + R + +L E+ L E L+ + KN EK D + +E +LE
Sbjct: 132 GPAYADKVARRGIRVGDLLDEEVLR-EKLEQLLEEKNAILEKLYGAEPLDVEEILEEYLE 190
Query: 195 VYETINP 201
E + P
Sbjct: 191 YAERLRP 197
>gnl|CDD|237387 PRK13430, PRK13430, F0F1 ATP synthase subunit delta; Provisional.
Length = 271
Score = 29.5 bits (67), Expect = 1.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 54 RIGGDADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATSEAIPALNE 102
R+ A PRGR L N AA R ++VA T+ A+P L++
Sbjct: 169 RLAEQAVGRPRGRSIEEGLDELSNLAAARRGRSVA--TVTT-AVP-LSD 213
>gnl|CDD|132526 TIGR03487, cas_csp2, CRISPR-associated protein Cas8c/Csp2, subtype
PGING. Members of this protein family are cas, or
CRISPR-associated, proteins. The two sequences in the
alignment seed are found within cas gene clusters that
are adjacent to CRISPR DNA repeats in two members of the
order Bacteroidales, Porphyromonas gingivalis W83 and
Bacteroides forsythus ATCC 43037. This cas protein
family is unique to the Pging (Porphyromonas gingivalis)
subtype.
Length = 489
Score = 30.0 bits (67), Expect = 1.7
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 7/71 (9%)
Query: 160 DNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTT 219
DN L E+ + + EKAL+ F+ ++ E +A++S+ K+ DG +T
Sbjct: 14 DNHLSEIEEITLEEIKFEIEKALNSFR------IQAQEPFAGGSKAQFSFDKIEDG-DTK 66
Query: 220 SPLALSTYTYT 230
+ LS + +
Sbjct: 67 KGIFLSPHIIS 77
>gnl|CDD|234902 PRK01112, PRK01112, phosphoglyceromutase; Provisional.
Length = 228
Score = 29.3 bits (66), Expect = 2.0
Identities = 44/173 (25%), Positives = 59/173 (34%), Gaps = 53/173 (30%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARH---------FNEAARRTKQT--VAG 89
RHG+S +N G D LS +G A A F R+ T +A
Sbjct: 8 RHGQSVWNAKNLFTGWVDIPLSQQGIAEAIAAGEKIKDLPIDCIFTSTLVRSLMTALLAM 67
Query: 90 IHATSEAIP-------------------------------ALNELDAGVCEGYSYEEMQD 118
+ +S IP ALNE G +G + E +
Sbjct: 68 TNHSSGKIPYIVHEEDDKKWMSRIYSDEEPEQMIPLFQSSALNERMYGELQGKNKAETAE 127
Query: 119 KFPQE--FAWRDQDKLRYRYPWGESYVDIMQRIRP-----VLLELEREDNLLV 164
KF +E WR K P GES D QR P +L L++ N+ V
Sbjct: 128 KFGEEQVKLWRRSYKT--APPQGESLEDTGQRTLPYFQNRILPHLQQGKNVFV 178
>gnl|CDD|214483 smart00042, CUB, Domain first found in C1r, C1s, uEGF, and bone
morphogenetic protein. This domain is found mostly
among developmentally-regulated proteins. Spermadhesins
contain only this domain.
Length = 102
Score = 27.7 bits (62), Expect = 2.6
Identities = 9/17 (52%), Positives = 13/17 (76%)
Query: 206 RYSYVKVYDGENTTSPL 222
Y YV++YDG + +SPL
Sbjct: 46 EYDYVEIYDGPSASSPL 62
>gnl|CDD|224490 COG1574, COG1574, Predicted metal-dependent hydrolase with the
TIM-barrel fold [General function prediction only].
Length = 535
Score = 29.2 bits (66), Expect = 2.8
Identities = 23/85 (27%), Positives = 28/85 (32%), Gaps = 2/85 (2%)
Query: 53 GRIGGDADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATSEAIPALNELD-AGVCEGY 111
G IG DAD P G L A A A A + A LN L GV +
Sbjct: 173 GIIGRDADGEPTGLLLENAQA-LVARLAPPPSPAEELEAAAARAARELNSLGITGVHDMA 231
Query: 112 SYEEMQDKFPQEFAWRDQDKLRYRY 136
Y+ + A +L R
Sbjct: 232 GYQGYYADYEAYRALAAGGELPVRV 256
>gnl|CDD|184517 PRK14117, gpmA, phosphoglyceromutase; Provisional.
Length = 230
Score = 28.8 bits (64), Expect = 3.0
Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Query: 41 FSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA 79
F+RHGESE+N G D DLS +G A + EA
Sbjct: 6 FARHGESEWNKANLFTGWADVDLSEKGTQQAIDAGKLIKEA 46
>gnl|CDD|236786 PRK10882, PRK10882, hydrogenase 2 protein HybA; Provisional.
Length = 328
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 214 DGENT-TSPLALSTYTYTIIKLTTSGYKTH 242
GE T +P LS YT IIK+ SG +
Sbjct: 68 QGEQTWDNPDKLSPYTNNIIKVWKSGTGVN 97
>gnl|CDD|172606 PRK14116, gpmA, phosphoglyceromutase; Provisional.
Length = 228
Score = 28.3 bits (63), Expect = 3.9
Identities = 36/134 (26%), Positives = 51/134 (38%), Gaps = 24/134 (17%)
Query: 41 FSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATSEAIP 98
RHG+SE+N+ + G D DLS +G A R EA Q + + AI
Sbjct: 6 LIRHGQSEWNLSNQFTGWVDVDLSEKGVEEAKKAGRLIKEAGLEFDQAYTSV--LTRAIK 63
Query: 99 ALNELDAGVCEGYSYEEM-QDKFPQEFAWR----------DQDKLRYRYPWGESYVDIMQ 147
L+ Y+ EE Q P+ WR +K +G+ V I +
Sbjct: 64 TLH---------YALEESDQLWIPETKTWRLNERHYGALQGLNKKETAEKYGDEQVHIWR 114
Query: 148 RIRPVLLELEREDN 161
R VL L D+
Sbjct: 115 RSYDVLPPLLDADD 128
>gnl|CDD|217161 pfam02639, DUF188, Uncharacterized BCR, YaiI/YqxD family COG1671.
Length = 130
Score = 27.4 bits (62), Expect = 4.1
Identities = 14/39 (35%), Positives = 16/39 (41%), Gaps = 8/39 (20%)
Query: 51 VLGRIGGDADLSPRGRLY-----AAALA-RHFNEAARRT 83
VL + G L+PRG LY LA R RR
Sbjct: 66 VLEK-GAYV-LNPRGELYTEENIGERLAMRDLMAKLRRA 102
>gnl|CDD|238294 cd00529, RuvC_resolvase, Holliday junction resolvases (HJRs) are
endonucleases that specifically resolve Holliday
junction DNA intermediates during homologous
recombination. HJR's occur in archaea, bacteria, and in
the mitochondria of certain fungi, however this CD
includes only the bacterial and mitochondrial HJR's.
These are referred to as the RuvC family of Holliday
junction resolvases, RuvC being the E.coli HJR. RuvC
and its orthologs are homodimers and are structurely
similar to RNase H and Hsp70.
Length = 154
Score = 27.6 bits (62), Expect = 4.8
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 64 RGRLYAAALARH---FNEAARRTKQTVAGI 90
RG L A R+ F + K+ V G
Sbjct: 84 RGALILALANRNLPVFEYTPNQVKKAVTGY 113
>gnl|CDD|239544 cd03461, 1,2-HQD, Hydroxyquinol 1,2-dioxygenase (1,2-HQD)
catalyzes the ring cleavage of hydroxyquinol
(1,2,4-trihydroxybenzene), a intermediate in the
degradation of a large variety of aromatic compounds
including some polychloro- and nitroaromatic
pollutants, to form 3-hydroxy-cis,cis-muconates.
1,2-HQD blongs to the aromatic dioxygenase family, a
family of mononuclear non-heme intradiol-cleaving
enzymes.
Length = 277
Score = 28.0 bits (63), Expect = 6.3
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 50 NVLGRIGGDADLSPRGRLYAAALARHFNEAARRTKQTVA 88
V+ +G D PR + A+L RH ++ AR + T
Sbjct: 6 AVIASMGPTTD--PRLKEIMASLVRHLHDFAREVRLTED 42
>gnl|CDD|187846 cd09715, Csp2_I-U, CRISPR/Cas system-associated protein Cas8c.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Predicted Cas8 ortholog.
Length = 474
Score = 28.0 bits (62), Expect = 7.6
Identities = 17/72 (23%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 159 EDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENT 218
+N L + + + EK L F+ ++ E + K + RYS+VK G +T
Sbjct: 13 YENNLSSIERITPKHIKFEIEKGLSSFR------IQPQEPFSGKSKVRYSFVKREKG-DT 65
Query: 219 TSPLALSTYTYT 230
+ + LS +
Sbjct: 66 KNGVFLSPNIIS 77
>gnl|CDD|233572 TIGR01779, TonB-B12, TonB-dependent vitamin B12 receptor. This
model represents the TonB-dependent outer membrane
receptor found in gamma proteobacteria responsible for
translocating the cobalt-containing vitamin B12
(cobalamin) [Transport and binding proteins, Other,
Transport and binding proteins, Porins].
Length = 614
Score = 27.5 bits (61), Expect = 9.4
Identities = 11/61 (18%), Positives = 24/61 (39%)
Query: 74 RHFNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLR 133
R + EA + + G SE + L G + + Y + ++ R+Q ++
Sbjct: 259 RLYKEAEKGDQSFTGGRQRQSERDVSELTLSTGKSKDWDYAYSKGRYSSTSDTREQRNIQ 318
Query: 134 Y 134
+
Sbjct: 319 W 319
>gnl|CDD|237554 PRK13909, PRK13909, putative recombination protein RecB;
Provisional.
Length = 910
Score = 27.6 bits (62), Expect = 9.8
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 2/47 (4%)
Query: 147 QRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFL 193
+RI LL LE ++ E+ + + +S+E+ L+ + FL
Sbjct: 47 ERIIDTLLNLE-KEKEESELNELEEKL-GLSKEELLNKRDKVYQEFL 91
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0657 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 15,245,364
Number of extensions: 1469159
Number of successful extensions: 1387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1370
Number of HSP's successfully gapped: 52
Length of query: 295
Length of database: 10,937,602
Length adjustment: 96
Effective length of query: 199
Effective length of database: 6,679,618
Effective search space: 1329243982
Effective search space used: 1329243982
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.7 bits)