RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2709
(295 letters)
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus}
SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A*
1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 173 bits (439), Expect = 6e-51
Identities = 101/284 (35%), Positives = 150/284 (52%), Gaps = 48/284 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G++ V + +QS ++ Y+ N TP++ Y RHGESE N+ GRIGGD LSPRGR
Sbjct: 221 VGQSYVVNRVADHIQSRIVYYLMNIHVTPRSIYLCRHGESELNLKGRIGGDPGLSPRGRE 280
Query: 68 YAAALARHFNEAA-----------RRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
++ LA+ ++ +RT QT + E LNE+DAGVCE +YEE+
Sbjct: 281 FSKHLAQFISDQNIKDLKVFTSQMKRTIQTAEALSVPYEQFKVLNEIDAGVCEEMTYEEI 340
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
QD +P EFA RDQDK RYRYP GESY D++QR+ PV++EL
Sbjct: 341 QDHYPLEFALRDQDKYRYRYPKGESYEDLVQRLEPVIMEL-------------------- 380
Query: 177 SEEKALDDFQHKMEHFLEV-YETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLT 235
+ E+ L + ++ + L +Y + + L +T++KLT
Sbjct: 381 ----------ERQENVLVICHQAVMRCL---LAY---FLDKAAEELPYLKCPLHTVLKLT 424
Query: 236 TSGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVPAH 279
Y +E I LN+A V+T+R +P++ + R +++AL TVPAH
Sbjct: 425 PVAYGCKVESIFLNVAAVNTHRDRPQNVDISRPSEEALVTVPAH 468
Score = 42.3 bits (99), Expect = 1e-04
Identities = 15/84 (17%), Positives = 38/84 (45%), Gaps = 5/84 (5%)
Query: 149 IRPVLLELEREDNLLVE-----MLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKL 203
+ +E D ++ + + DY N ++A +DF ++E + YE+++ +
Sbjct: 150 YKTFFVESICVDPEVIAANIVQVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQ 209
Query: 204 EARYSYVKVYDGENTTSPLALSTY 227
+ SY+K+ D + ++ +
Sbjct: 210 DRDLSYIKIMDVGQSYVVNRVADH 233
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3
(6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...;
bifunctional enzyme, EDTA complex; HET: F6P EDT ADP;
2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B*
3qpu_A* 3qpv_A* 3qpw_A*
Length = 520
Score = 168 bits (427), Expect = 8e-49
Identities = 90/281 (32%), Positives = 135/281 (48%), Gaps = 46/281 (16%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRL 67
G V + +QS ++ Y+ N P+T Y RHGE+E N+ GRIGGD+ LS RG+
Sbjct: 218 VGRRFLVNRVQDHIQSRIVYYLMNIHVQPRTIYLCRHGENEHNLQGRIGGDSGLSSRGKK 277
Query: 68 YAAALARHFNEAA-----------RRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEM 116
+A+AL++ E + T QT + E ALNE+DAGVCE +YEE+
Sbjct: 278 FASALSKFVEEQNLKDLRVWTSQLKSTIQTAEALRLPYEQWKALNEIDAGVCEELTYEEI 337
Query: 117 QDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNM 176
+D +P+E+A R+QDK YRYP GESY D++QR+ PV++ELER++N+LV
Sbjct: 338 RDTYPEEYALREQDKYYYRYPTGESYQDLVQRLEPVIMELERQENVLV------------ 385
Query: 177 SEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTT 236
H+ L +Y E L +T +
Sbjct: 386 --------ICHQA------------VLRCLLAYFLDKSAEEMPY-LKCPLHTVLKLTPVA 424
Query: 237 SGYKTHMEIIKLNIACVDTYRQQPKDCSVLRSTQDALRTVP 277
G + +E I LN+ V T+R++ +D + +V
Sbjct: 425 YGCR--VESIYLNVESVCTHRERSEDAKKGPNPLMRRNSVT 463
Score = 39.7 bits (92), Expect = 8e-04
Identities = 17/72 (23%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 149 IRPVLLELEREDNLLVE-----MLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINP-K 202
+ +E +D +V + + DYK+ + +A+DDF ++ + Y+ ++P K
Sbjct: 146 FKAFFIESVCDDPTVVASNIMEVKISSPDYKDCNSAEAMDDFMKRISCYEASYQPLDPDK 205
Query: 203 LEARYSYVKVYD 214
+ S +KV D
Sbjct: 206 CDRDLSLIKVID 217
>1h2e_A Phosphatase, YHFR; hydrolase, broad specificity phosphatase, DPGM
homolog; 1.69A {Bacillus stearothermophilus} SCOP:
c.60.1.1 PDB: 1h2f_A* 1ebb_A
Length = 207
Score = 100 bits (252), Expect = 7e-26
Identities = 36/145 (24%), Positives = 59/145 (40%), Gaps = 18/145 (12%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA---------RRTKQT 86
T Y +RHGE+++NV R+ G D+ L+ +GR A L + R +T
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 87 ---VAGIHATS-EAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESY 142
V G L E+ G EG +++E++ P F Q Y GE +
Sbjct: 63 AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERF 122
Query: 143 VDIMQRIRPVLLEL---EREDNLLV 164
D+ QR + + + +L+
Sbjct: 123 CDVQQRALEAVQSIVDRHEGETVLI 147
>1v37_A Phosphoglycerate mutase; riken structu genomics/proteomics
initiative, RSGI, structural genomics,; 1.40A {Thermus
thermophilus} SCOP: c.60.1.1 PDB: 1v7q_A 2hia_A 2pa0_A
2p2y_A 2p77_A 2p6m_A 2p9y_A 2p30_A 2ekz_A 2p9f_A 2p79_A
2p78_A 2p2z_A 2p75_A 2owe_A 2enu_A 2ekb_A 2p6o_A 2owd_A
2enw_A ...
Length = 177
Score = 98.1 bits (245), Expect = 3e-25
Identities = 30/133 (22%), Positives = 49/133 (36%), Gaps = 13/133 (9%)
Query: 40 YFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA------RRTKQTVAGIH 91
+ RHGE+ +N GR+ G D L+ G A L R ++T
Sbjct: 4 WLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELAG 63
Query: 92 ATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRP 151
+ P L E+ G EG +E + ++ + + P GES +R+
Sbjct: 64 FSPRLYPELREIHFGALEGALWETLDPRYKEALLRFQ----GFHPPGGESLSAFQERVFR 119
Query: 152 VLLELEREDNLLV 164
L L+ +L
Sbjct: 120 FLEGLKA-PAVLF 131
>2a6p_A Possible phosphoglycerate mutase GPM2; predicted phosphoglycerate
mutase, structural genomics, PSI, structure initiative;
2.20A {Mycobacterium tuberculosis}
Length = 208
Score = 91.5 bits (228), Expect = 2e-22
Identities = 30/138 (21%), Positives = 47/138 (34%), Gaps = 20/138 (14%)
Query: 33 RPTPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALAR-----HFNEAA----- 80
RHGE+ ++ LGR G + +L+ GR A + ++
Sbjct: 7 GVRNHRLLLLRHGETAWSTLGRHTGGTEVELTDTGRTQAELAGQLLGELELDDPIVICSP 66
Query: 81 -RRTKQTVAGI-HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPW 138
RRT T +E L E D G EG + ++++ P W P
Sbjct: 67 RRRTLDTAKLAGLTVNEVTGLLAEWDYGSYEGLTTPQIRESEPDWLVWTH------GCPA 120
Query: 139 GESYVDIMQRIRPVLLEL 156
GES + R +
Sbjct: 121 GESVAQVNDRADSAVALA 138
>3e9c_A ZGC:56074; histidine phosphatase, hydrolase; 2.00A {Danio rerio}
PDB: 3e9d_A 3e9e_A
Length = 265
Score = 88.7 bits (220), Expect = 6e-21
Identities = 37/140 (26%), Positives = 52/140 (37%), Gaps = 26/140 (18%)
Query: 38 TFYFSRHGESEFNVLGRIGG---DADLSPRGRLYAAALAR-----HFNEA-------ARR 82
RHGE+++N + G D LS G AAA R HF A +
Sbjct: 5 ALTIVRHGETQYNRDKLLQGQGIDTPLSDTGHQQAAAAGRYLKDLHFTNVFVSNLQRAIQ 64
Query: 83 TKQTVAGIHATSEAIP-----ALNELDAGVCEGYSYEEMQDKFPQEF-AWRDQDKLRYRY 136
T + + G + S A L E GV EG E +++ + RD Y
Sbjct: 65 TAEIILGNNLHSSATEMILDPLLRERGFGVAEGRPKEHLKNMANAAGQSCRD-----YTP 119
Query: 137 PWGESYVDIMQRIRPVLLEL 156
P GE+ + R + L L
Sbjct: 120 PGGETLEQVKTRFKMFLKSL 139
>3hjg_A Putative alpha-ribazole-5'-phosphate phosphatase COBC; PSI-2,
NYSGXRC, structural genomics, protein structure
initiative; 2.80A {Vibrio parahaemolyticus}
Length = 213
Score = 81.2 bits (201), Expect = 2e-18
Identities = 24/147 (16%), Positives = 46/147 (31%), Gaps = 21/147 (14%)
Query: 35 TPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA---------RRT 83
Y RHG+ + + G D + + A+A R
Sbjct: 4 KTLNIYLMRHGKVDAA--PGLHGQTDLKVKEAEQQ-QIAMAWKTKGYDVAGIISSPLSRC 60
Query: 84 KQTVAGIHATS----EAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWG 139
+ L E+D G +G ++ + + + + A+ + P
Sbjct: 61 HDLAQILAEQQLLPMTTEDDLQEMDFGDFDGMPFDLLTEHWKKLDAFWQSP-AHHSLPNA 119
Query: 140 ESYVDIMQRIRPVLLELERE--DNLLV 164
ES QR+ ++ + DNLL+
Sbjct: 120 ESLSTFSQRVSRAWSQIINDINDNLLI 146
>3dcy_A Regulator protein; OMIM 610775, C12ORF5, tigar, TP53-induced
glycolysis and apoptosis regulator, CAsp target,
structural genomics medical relevance; HET: MSE; 1.75A
{Homo sapiens}
Length = 275
Score = 74.0 bits (182), Expect = 1e-15
Identities = 33/149 (22%), Positives = 50/149 (33%), Gaps = 24/149 (16%)
Query: 32 FRPTPKTFYFSRHGESEFNVLGRIGG---DADLSPRGRLYAAALAR-----HFNEA---- 79
F+ RHGE+ FN I G D LS G AAA F A
Sbjct: 4 FQSARFALTVVRHGETRFNKEKIIQGQGVDEPLSETGFKQAAAAGIFLNNVKFTHAFSSD 63
Query: 80 ---ARRTKQTVAGIHATSEAIP-----ALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDK 131
++T + + + L E GV EG + E++ A R++
Sbjct: 64 LMRTKQTMHGILERSKFCKDMTVKYDSRLRERKYGVVEGKALSELRAMAK---AAREECP 120
Query: 132 LRYRYPWGESYVDIMQRIRPVLLELERED 160
+ + P GE+ + R L +
Sbjct: 121 V-FTPPGGETLDQVKMRGIDFFEFLCQLI 148
>3r7a_A Phosphoglycerate mutase, putative; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
HET: MSE EPE; 1.84A {Bacillus anthracis}
Length = 237
Score = 70.0 bits (172), Expect = 2e-14
Identities = 36/173 (20%), Positives = 54/173 (31%), Gaps = 38/173 (21%)
Query: 30 SNFRPTPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALAR-----HFNEA--- 79
T Y +RHG++ N R G D+ L +G A L HF A
Sbjct: 7 RETDSNVVTLYVTRHGKTILNTNHRAQGWADSPLVEKGVEVATNLGTGLKDIHFMNAYSS 66
Query: 80 ----ARRTKQTVAGIHATS----EAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDK 131
A T V S E L EL+ G+ EG + M D + ++
Sbjct: 67 DSGRAIETANLVLKYSEQSKLKLEQRKKLRELNFGIFEGEKLDNMWDAVGKAAGVTSPEE 126
Query: 132 L-RYRY-------------PWGESYVDIMQRIRPVL------LELEREDNLLV 164
L ++ E + RI+ + + N+LV
Sbjct: 127 LLKFSIQEVIDLIRAADPTKQAEDWELFSTRIKAEIDKISEEAAKDGGGNVLV 179
>2qni_A AGR_C_517P, uncharacterized protein ATU0299; MCSG, in SITU
proteolysis, structural genomics, PSI protein structure
initiative; 1.80A {Agrobacterium tumefaciens str}
Length = 219
Score = 69.1 bits (169), Expect = 4e-14
Identities = 23/133 (17%), Positives = 40/133 (30%), Gaps = 19/133 (14%)
Query: 40 YFSRHGESEFNVLGRIGGDADLSPRGRLYAAALARHFNEAA---------RRTKQTVAGI 90
+ H + + + + LS RG A +R A + +T +
Sbjct: 25 LYITHPQVKID-PAVPVPEWGLSERGAERAREASRLPWAKALRRIVSSAETKAIETAHML 83
Query: 91 HATS----EAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIM 146
TS E I A++E D E + FA + + E +D
Sbjct: 84 AETSGAAIEIIEAMHENDRSATGFLPPPEFEKAADWFFAHPE-----ESFQGWERAIDAQ 138
Query: 147 QRIRPVLLELERE 159
RI + +
Sbjct: 139 ARIVEAVKAVLDR 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.3 bits (145), Expect = 2e-10
Identities = 59/384 (15%), Positives = 99/384 (25%), Gaps = 135/384 (35%)
Query: 9 GENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSR-HGESEFNVLGRIGGDADLSPRGRL 67
E M +F++ L+ Y F S E S R+
Sbjct: 75 QEEMVQKFVEEVLRIN---Y---------KFLMSPIKTEQR-----------QPSMMTRM 111
Query: 68 YAAALARHFNEAARRTKQTVAGIHATSEAIPALNELD----------AG------VCEGY 111
Y R +N+ K V+ + + AL EL G +
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVC 171
Query: 112 SYEEMQDKFPQEFAW-------RDQD------KLRYRY-PWGESYVDIMQRIRPVLLELE 157
++Q K + W + KL Y+ P S D I+ + ++
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ 231
Query: 158 REDNLLVEMLQFNKDYKNMSEEKAL---DDFQHK--MEHF------------LEVYETIN 200
E L +K Y+N L + Q+ F +V + ++
Sbjct: 232 AELR----RLLKSKPYEN-----CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 201 PKLEARYSYVKVYDGEN------------------------TTSPLALST-------YTY 229
S TT+P LS
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA 342
Query: 230 TIIKLTTSGYKTHMEIIKLNIACVDT--YRQQPKDCSVLRSTQDALRTVPAHFDTLNM-W 286
T II+ ++ ++ YR+ SV A +P L++ W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFP--PSAH--IPT--ILLSLIW 396
Query: 287 PAP---------------SLIEQN 295
SL+E+
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQ 420
Score = 48.7 bits (115), Expect = 1e-06
Identities = 32/230 (13%), Positives = 73/230 (31%), Gaps = 53/230 (23%)
Query: 70 AALARHFNEAARRTKQTVAGIHATSEAIPA-LNELDAGVCEGYSYEEMQDKFPQEFAWRD 128
A R K + I + LN L+ E + F +
Sbjct: 334 AESIRDGLATWDNWKHV--NCDKLTTIIESSLNVLEP--------AEYRKMF-DRLSVFP 382
Query: 129 QDKLRYRYPWGESYVDIMQRIRPVL-LELERED--NLLVEMLQF---NKDYKNMSEEKAL 182
I + ++ ++ + D ++ ++ ++ K K + ++
Sbjct: 383 PS------------AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST--ISI 428
Query: 183 DDFQHKMEHFLEVYETINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTH 242
+++ LE ++ + Y+ K +D + P L Y Y+ I G+ H
Sbjct: 429 PSIYLELKVKLENEYALHRSIVDHYNIPKTFDS-DDLIPPYLDQYFYSHI-----GH--H 480
Query: 243 MEIIKLNIACVDTYRQ--------QPKDCSVLRSTQDALRTVPAHFDTLN 284
++ I+ + + +R + K +R A + +TL
Sbjct: 481 LKNIE-HPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSILNTLQ 525
>3eoz_A Putative phosphoglycerate mutase; PGAM, malaria, structural
genomics, isomerase, structural GE consortium, SGC;
2.40A {Plasmodium falciparum}
Length = 214
Score = 56.3 bits (136), Expect = 1e-09
Identities = 17/138 (12%), Positives = 28/138 (20%), Gaps = 29/138 (21%)
Query: 34 PTPKTFYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALARHFNEAA------------- 80
T K RHG+ E L+ G A + +
Sbjct: 19 NTTKHIILVRHGQYERRYKDDE-NSKRLTKEGCKQADITGKKLKDILNNKKVSVIYHSDM 77
Query: 81 RRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGE 140
R K+T I + + E P + +
Sbjct: 78 IRAKETANIISK------YFPDANLINDPN--LNEGTPYLPDPLPR-------HSKFDAQ 122
Query: 141 SYVDIMQRIRPVLLELER 158
+ +RI
Sbjct: 123 KIKEDNKRINKAYETYFY 140
>3f3k_A Uncharacterized protein YKR043C; structural genomics,, PSI-2, prote
structure initiative; 1.75A {Saccharomyces cerevisiae}
PDB: 3lg2_A 3oi7_A* 3ll4_A*
Length = 265
Score = 53.2 bits (128), Expect = 2e-08
Identities = 27/150 (18%), Positives = 47/150 (31%), Gaps = 31/150 (20%)
Query: 34 PTPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA------------ 79
TP+ RHG++E++ G+ G D L+P G
Sbjct: 4 LTPR-CIIVRHGQTEWSKSGQYTGLTDLPLTPYGEGQMLRTGESVFRNNQFLNPDNITYI 62
Query: 80 -------ARRTKQTVAGIHATSEAI-------PALNELDAGVCEGYSYEEMQDKFPQEFA 125
AR+T V + + L E + G EG E+ +
Sbjct: 63 FTSPRLRARQTVDLVLKPLSDEQRAKIRVVVDDDLREWEYGDYEGMLTREIIELRKSRGL 122
Query: 126 WRDQDKLRYRY--PWGESYVDIMQRIRPVL 153
+++ +R GE+ I R+ +
Sbjct: 123 DKERPWNIWRDGCENGETTQQIGLRLSRAI 152
>3mxo_A Serine/threonine-protein phosphatase PGAM5, mitoc; phosphoglycerate
mutase family member 5, BXLBV68, MGC protein, structural
genomics consortium; HET: PG4 PGE PEG; 1.70A {Homo
sapiens} PDB: 3o0t_A
Length = 202
Score = 51.0 bits (122), Expect = 7e-08
Identities = 21/138 (15%), Positives = 38/138 (27%), Gaps = 31/138 (22%)
Query: 29 ISNFRPTP-KTFYFSRHGESEFNVLGRIGGDADLSPRGRLYAAALARHFNEAA------- 80
+ +++ + + RH + + G + D L+P GR A
Sbjct: 2 MDHYKAKATRHIFLIRHSQYHVD--GSLEKDRTLTPLGREQAELTGLRLASLGLKFNKIV 59
Query: 81 ----RRTKQTVAGIHATSEAIPALN-ELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYR 135
R +T I S +P + + EG E + +
Sbjct: 60 HSSMTRAIETTDII---SRHLPGVCKVSTDLLREGAPIEP-------------DPPVSHW 103
Query: 136 YPWGESYVDIMQRIRPVL 153
P Y + RI
Sbjct: 104 KPEAVQYYEDGARIEAAF 121
>3c7t_A Ecdysteroid-phosphate phosphatase; ecdysone, 2H-phosphatase, PGM,
hydrolase; 1.76A {Bombyx mori}
Length = 263
Score = 47.0 bits (111), Expect = 2e-06
Identities = 25/178 (14%), Positives = 45/178 (25%), Gaps = 52/178 (29%)
Query: 34 PTPKTFYFSRHGESEFNVLG-------------------------RIGG------DADLS 62
+ + + RHGE G R GG D L+
Sbjct: 2 KSRRWVFALRHGERVDLTYGPWVPHCFENDTYVRKDLNLPLKLAHRAGGKGGYVKDTPLT 61
Query: 63 PRGRLYAAALARHFNEA-----------ARRTKQTVAGIHATSEAIPALN-ELDAGVCEG 110
G A + A A R +T G A P++ +++ G+ E
Sbjct: 62 RLGWFQAQLVGEGMRMAGVSIKHVYASPALRCVETAQGFLDGLRADPSVKIKVEPGLFEF 121
Query: 111 ---YSYEEMQDKFPQEFAWR------DQDKLRYRYPWGESYVDIMQRIRPVLLELERE 159
+ + + P E E+ + +R + +
Sbjct: 122 KNWHMPKGIDFMTPIELCKAGLNVDMTYKPYVEMDASAETMDEFFKRGEVAMQAAVND 179
>3d4i_A STS-2 protein; PGM, 2H-phosphatase, PTP, SH3 domain, hydrolase;
1.95A {Mus musculus} PDB: 3d6a_A 3db1_A
Length = 273
Score = 44.7 bits (105), Expect = 1e-05
Identities = 29/194 (14%), Positives = 48/194 (24%), Gaps = 62/194 (31%)
Query: 33 RPTPKTFYFSRHGESEFNVLG---------------------------RIGG------DA 59
+ + RHGE V G R G D
Sbjct: 6 TISRRGILVIRHGERVDQVFGKSWLQQCTTADGKYYRPDLNFPRSLPRRSNGIKDFENDP 65
Query: 60 DLSPRGRLYAAALARHFNEA-----------ARRTKQTVAGIHATSEAIPALN-ELDAGV 107
LS G A ++ A R QT I + L ++ G+
Sbjct: 66 PLSSCGIFQARLAGEALLDSGVRVTAVFASPALRCVQTAKHILEELKLEKKLKIRVEPGI 125
Query: 108 CEGY------------SYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLE 155
E + EE+++ R ESY ++R + +
Sbjct: 126 FEWMKWEASKATLTFLTLEELKEANFNVDLDYRPALPRCSLMPAESYDQYVERCAVSMGQ 185
Query: 156 L-----EREDNLLV 164
+ + L+
Sbjct: 186 IINTCPQDMGITLI 199
>3f2i_A ALR0221 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG, function; 2.00A {Nostoc SP}
Length = 172
Score = 40.8 bits (96), Expect = 1e-04
Identities = 14/67 (20%), Positives = 23/67 (34%), Gaps = 15/67 (22%)
Query: 40 YFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEA-----------ARRTKQT 86
Y RHG +E G D + L+ G+ +A + R +QT
Sbjct: 4 YLIRHGIAEAQKTG--IKDEERELTQEGKQKTEKVAYRLVKLGRQFDLIVTSPLIRARQT 61
Query: 87 VAGIHAT 93
+ A+
Sbjct: 62 AEILLAS 68
>2rfl_A Putative phosphohistidine phosphatase SIXA; alpha-beta-alpha
sandwich, structural genomics, PSI-2, prote structure
initiative; 2.35A {Agrobacterium tumefaciens str}
Length = 173
Score = 39.7 bits (93), Expect = 3e-04
Identities = 16/85 (18%), Positives = 25/85 (29%), Gaps = 15/85 (17%)
Query: 34 PTPKTFYFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNE-----------AA 80
P Y RH ++ + G D D L+ G A +A + A
Sbjct: 6 SFPTRVYLLRHAKAAWAAPG--ERDFDRGLNEAGFAEAEIIADLAADRRYRPDLILSSTA 63
Query: 81 RRTKQTVAGIHATSEAIPALNELDA 105
R +QT + +D
Sbjct: 64 ARCRQTTQAWQRAFNEGIDIVYIDE 88
>1ujc_A Phosphohistidine phosphatase SIXA; alpha-beta fold, hydrolase;
1.90A {Escherichia coli} PDB: 1ujb_A
Length = 161
Score = 36.5 bits (85), Expect = 0.003
Identities = 10/64 (15%), Positives = 21/64 (32%), Gaps = 17/64 (26%)
Query: 40 YFSRHGESEFNVLGRIGGDAD--LSPRGRLYAAALARHFNEA-----------ARRTKQT 86
+ RHG++ + D+ L+ G + +A R +QT
Sbjct: 4 FIMRHGDAALDAAS----DSVRPLTTNGCDESRLMANWLKGQKVEIERVLVSPFLRAEQT 59
Query: 87 VAGI 90
+ +
Sbjct: 60 LEEV 63
>1e58_A Phosphoglycerate mutase; phosphohistidine, glycolysis and
gluconeogenesis, isomerase; HET: NEP; 1.25A {Escherichia
coli} SCOP: c.60.1.1 PDB: 1e59_A*
Length = 249
Score = 36.3 bits (85), Expect = 0.007
Identities = 39/154 (25%), Positives = 55/154 (35%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES++N R G D DLS +G A A + E +R T+
Sbjct: 9 RHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHTLWN 68
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+ + +P LNE G +G + E +K+ E WR +D
Sbjct: 69 VLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPELTKD 128
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
RY RY P ES + R+ P
Sbjct: 129 DERYPGHDPRYAKLSEKELPLTESLALTIDRVIP 162
>1fzt_A Phosphoglycerate mutase; open B-sheet-helices, isomerase; NMR
{Schizosaccharomyces pombe} SCOP: c.60.1.1
Length = 211
Score = 35.5 bits (83), Expect = 0.009
Identities = 35/154 (22%), Positives = 55/154 (35%), Gaps = 39/154 (25%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGESE+N L G D LS G A +R ++T
Sbjct: 14 RHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFTSALQRAQKTCQI 73
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWRDQDKLRYRY---- 136
I + LNE G +G + ++ + K+ E WR R
Sbjct: 74 ILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWR-------RSYDIA 126
Query: 137 -PWGESYVDIMQRIRP-----VLLELEREDNLLV 164
P GES D +R+ P ++ + + + +L+
Sbjct: 127 PPNGESLKDTAERVLPYYKSTIVPHILKGEKVLI 160
>4emb_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.30A {Borrelia burgdorferi}
Length = 274
Score = 35.6 bits (83), Expect = 0.011
Identities = 35/154 (22%), Positives = 48/154 (31%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGESE+N G D LS +G A + R T+
Sbjct: 34 RHGESEWNKENLFTGWTDVKLSDKGIDEAVEAGLLLKQEGYSFDIAFSSLLSRANDTLNI 93
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
I I LNE G +G + E K+ ++ WR D+
Sbjct: 94 ILRELGQSYISVKKTWRLNERHYGALQGLNKSETAAKYGEDKVLIWRRSYDVPPMSLDES 153
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
R+ RY P E D + R+ P
Sbjct: 154 DDRHPIKDPRYKHIPKRELPSTECLKDTVARVIP 187
>3kkk_A Phosphoglycerate mutase; PGAM, glycolysis, malaria, structural
genomics, medical STRU genomics of pathogenic protozoa,
MSGPP; 2.08A {Plasmodium falciparum 3D7} PDB: 1xq9_A
Length = 258
Score = 35.6 bits (83), Expect = 0.012
Identities = 36/154 (23%), Positives = 57/154 (37%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES +N + G D LS +G A A ++ E +R T
Sbjct: 18 RHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLKRAICTAWN 77
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+ T++ +P LNE G +G + E K+ +E WR D++
Sbjct: 78 VLKTADLLHVPVVKTWRLNERHCGSLQGLNKSETAKKYGEEQVKIWRRSYDIPPPKLDKE 137
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
R+ Y P+ E D ++R+ P
Sbjct: 138 DNRWPGHNVVYKNVPKDALPFTECLKDTVERVLP 171
>4eo9_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; structural
genomics, niaid, national institute of allergy AN
infectious diseases; 2.45A {Mycobacterium leprae}
Length = 268
Score = 35.3 bits (82), Expect = 0.015
Identities = 35/152 (23%), Positives = 50/152 (32%), Gaps = 43/152 (28%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES++N G D L+ +GR A E RR T
Sbjct: 34 RHGESDWNARNLFTGWVDVGLTDKGRAEAVRSGELLAEHNLLPDVLYTSLLRRAITTAHL 93
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
T++ IP LNE G +G + ++ +E AWR ++
Sbjct: 94 ALDTADWLWIPVRRSWRLNERHYGALQGLDKAVTKARYGEERFMAWRRSYDTPPPPIEKG 153
Query: 131 KLRY-----RY------PWGESYVDIMQRIRP 151
RY P E D++ R P
Sbjct: 154 SEFSQDADPRYTDIGGGPLTECLADVVTRFLP 185
>1yfk_A Phosphoglycerate mutase 1; alpha/beta, isomerase, hydrolase; HET:
CIT; 2.70A {Homo sapiens} PDB: 1yjx_A*
Length = 262
Score = 35.2 bits (82), Expect = 0.015
Identities = 39/156 (25%), Positives = 53/156 (33%), Gaps = 47/156 (30%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES +N+ R G DADLSP G A + +A +R +T+
Sbjct: 10 RHGESAWNLENRFSGWYDADLSPAGHEEAKRGGQALRDAGYEFDICFTSVQKRAIRTLWT 69
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+ + +P LNE G G + E K + WR + D
Sbjct: 70 VLDAIDQMWLPVVRTWRLNERHYGGLTGLNKAETAAKHGEAQVKIWRRSYDVPPPPMEPD 129
Query: 131 KLRY-------RY--------PWGESYVDIMQRIRP 151
Y RY P ES D + R P
Sbjct: 130 HPFYSNISKDRRYADLTEDQLPSCESLKDTIARALP 165
>1rii_A 2,3-bisphosphoglycerate-dependent phosphoglycerat; phosphoglyerate
mutase, SH3 domain binding, structural genom TBSGC;
1.70A {Mycobacterium tuberculosis} SCOP: c.60.1.1
Length = 265
Score = 35.2 bits (82), Expect = 0.017
Identities = 35/152 (23%), Positives = 52/152 (34%), Gaps = 43/152 (28%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES++N L G D L+ +G+ A E RR T
Sbjct: 11 RHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRAITTAHL 70
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+++ IP LNE G +G E + ++ +E AWR ++
Sbjct: 71 ALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPPPPIERG 130
Query: 131 KLRY-----RY------PWGESYVDIMQRIRP 151
RY P E D++ R P
Sbjct: 131 SQFSQDADPRYADIGGGPLTECLADVVARFLP 162
>3gp3_A 2,3-bisphosphoglycerate-dependent phosphoglycerat;
phosphoglyceromutase, decode, SBRI, niaid, UWPPG,
glycolysis isomerase; HET: PG4 SEP; 1.50A {Burkholderia
pseudomallei} PDB: 3fdz_A* 3ezn_A* 3gp5_A* 3gw8_A*
3lnt_A
Length = 257
Score = 34.8 bits (81), Expect = 0.019
Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGES +N R G D DL+ +G A + EA +R +T+
Sbjct: 16 RHGESTWNKENRFTGWVDVDLTEQGNREARQAGQLLKEAGYTFDIAYTSVLKRAIRTLWH 75
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+ + +P LNE G G + E K+ E WR +
Sbjct: 76 VQDQMDLMYVPVVHSWRLNERHYGALSGLNKAETAAKYGDEQVLVWRRSYDTPPPALEPG 135
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
R RY P E D + R+ P
Sbjct: 136 DERAPYADPRYAKVPREQLPLTECLKDTVARVLP 169
>3d8h_A Glycolytic phosphoglycerate mutase; structural genomics, malaria,
glycolysis, I structural genomics consortium, SGC; 2.01A
{Cryptosporidium parvum}
Length = 267
Score = 34.8 bits (81), Expect = 0.022
Identities = 36/154 (23%), Positives = 51/154 (33%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHGESE+N R G D LS +G A R E +R T
Sbjct: 27 RHGESEWNKENRFTGWTDVSLSEQGVSEAIEAGRMLLEKGFKFDVVYTSVLKRAIMTTWT 86
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
+ P LNE G +G + E KF ++ WR ++
Sbjct: 87 VLKELGNINCPIINHWRLNERHYGALQGLNKSETASKFGEDQVKIWRRSFDVPPPVLEKS 146
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
R+ Y P E D ++R++P
Sbjct: 147 DPRWPGNELIYKGICPSCLPTTECLKDTVERVKP 180
>1qhf_A Protein (phosphoglycerate mutase); transferase (phosphoryl); HET:
3PG; 1.70A {Saccharomyces cerevisiae} SCOP: c.60.1.1
PDB: 5pgm_D 1bq3_D* 1bq4_D 4pgm_A 3pgm_A*
Length = 240
Score = 34.4 bits (80), Expect = 0.027
Identities = 37/154 (24%), Positives = 49/154 (31%), Gaps = 45/154 (29%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAA-----------RRTKQTVAG 89
RHG+SE+N G D LS +G+ AA E R QT
Sbjct: 7 RHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSRAIQTANI 66
Query: 90 IHATSEA--IP-----ALNELDAGVCEGYSYEEMQDKFPQE--FAWR----------DQD 130
++ IP LNE G +G E KF +E +R D
Sbjct: 67 ALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVPPPPIDAS 126
Query: 131 KLRY-----RY--------PWGESYVDIMQRIRP 151
RY P ES ++ R+ P
Sbjct: 127 SPFSQKGDERYKYVDPNVLPETESLALVIDRLLP 160
>2hhj_A Bisphosphoglycerate mutase; isomerase; HET: NEP DG2 3PG; 1.50A
{Homo sapiens} SCOP: c.60.1.1 PDB: 1t8p_A* 2f90_A*
2a9j_A* 2h4z_A* 2h52_A* 2h4x_A* 3nfy_A
Length = 267
Score = 34.1 bits (79), Expect = 0.036
Identities = 9/26 (34%), Positives = 11/26 (42%), Gaps = 2/26 (7%)
Query: 43 RHGESEFNVLGRIGG--DADLSPRGR 66
RHGE +N R D L+ G
Sbjct: 10 RHGEGAWNKENRFCSWVDQKLNSEGM 35
>3mbk_A Ubiquitin-associated and SH3 domain-containing PR; PGM, STS-1,
signaling protein, low PH, alternative splicing,
cytoplasm, nucleus, phosphoprotein; 1.35A {Mus musculus}
PDB: 2ikq_A 2h0q_A
Length = 264
Score = 33.4 bits (76), Expect = 0.069
Identities = 33/175 (18%), Positives = 52/175 (29%), Gaps = 33/175 (18%)
Query: 9 GENMNVRFIDGPLQSEVLS---YISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSPRG 65
GE M+V F L + YI P + G ++ DA ++ G
Sbjct: 9 GERMDVVFGKYWLSQCFDAKGRYIRTNLNMPHSLPQRSGGFRDYEK------DAPITVFG 62
Query: 66 RLYAAALARHFNEA-----------ARRTKQTVAGIHATSEAIPALN-ELDAGVCEGYSY 113
+ A + E+ + R QT I + L ++ G+ E +
Sbjct: 63 CMQARLVGEALLESNTVIDHVYCSPSLRCVQTAHNILKGLQQDNHLKIRVEPGLFEWTKW 122
Query: 114 EEMQDKF----PQEFAWRDQDK-LRYRY-------PWGESYVDIMQRIRPVLLEL 156
P E A + YR ESY + R V E+
Sbjct: 123 VAGSTLPAWIPPSELAAANLSVDTTYRPHIPVSKLAISESYDTYINRSFQVTKEI 177
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.5 bits (76), Expect = 0.098
Identities = 55/328 (16%), Positives = 99/328 (30%), Gaps = 98/328 (29%)
Query: 25 VLSYISNFRPTPKTFYFSRHGES----------EFNVLGRIGGDADLSP---RGRLY--- 68
+L ++ N TP Y S + V ++ G +P R L
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLG---FTPGELRSYLKGAT 271
Query: 69 --------AAALA-----RHFNEAARRTKQTVA--GIHATSEAIPALN----------EL 103
A A+A F + R+ + G+ EA P + E
Sbjct: 272 GHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDSLEN 330
Query: 104 DAGV------CEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELE 157
+ GV + E++QD +K P V+I
Sbjct: 331 NEGVPSPMLSISNLTQEQVQDYV---------NKTNSHLP-AGKQVEISLVNGA------ 374
Query: 158 REDNLLV----EMLQ-FNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKV 212
NL+V + L N + LD Q ++ KL+ ++ V
Sbjct: 375 --KNLVVSGPPQSLYGLNLTLRKAKAPSGLD--QSRIPFSER-------KLKFSNRFLPV 423
Query: 213 YDGENTT---SPLALSTYTYTIIK-LTTSGYKTHMEIIKLNIACVDTY---RQQPKDCSV 265
+ S L L + I K L + + + + I DT+ + S+
Sbjct: 424 -----ASPFHSHL-LVPASDLINKDLVKNNVSFNAK--DIQIPVYDTFDGSDLRVLSGSI 475
Query: 266 LRSTQDALRTVPAHFDTLNMWPAPSLIE 293
D + +P ++T + A +++
Sbjct: 476 SERIVDCIIRLPVKWETTTQFKATHILD 503
Score = 33.1 bits (75), Expect = 0.13
Identities = 38/242 (15%), Positives = 57/242 (23%), Gaps = 117/242 (48%)
Query: 65 GR-LYAA-ALARH-FNEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFP 121
G LY A+ +N A K T G+S ++ P
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDT----------------------YGFSILDIVINNP 1669
Query: 122 QEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKA 181
+ GE +RIR ++Y M E
Sbjct: 1670 VNLTI---------HFGGEK----GKRIR--------------------ENYSAMIFETI 1696
Query: 182 LDDFQHKMEHFLEVYETINPKLEARYSYVKVYDGEN-----T--TSPLALSTYTYTIIKL 234
+D + F E+ E SY + E T T P AL
Sbjct: 1697 VDGKLKTEKIFKEINEHST-------SY--TFRSEKGLLSATQFTQP-AL---------T 1737
Query: 235 TTSGYKTHMEIIKLNIACVDTYRQQ---PKDC-----S------------VLRSTQDALR 274
A + + + P D S V+ S + +
Sbjct: 1738 LME------------KAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM-SIESLVE 1784
Query: 275 TV 276
V
Sbjct: 1785 VV 1786
Score = 30.4 bits (68), Expect = 0.85
Identities = 47/250 (18%), Positives = 85/250 (34%), Gaps = 87/250 (34%)
Query: 4 YSVIAGENMNVRFIDGPLQSEVLSYISNFRPTPKTFYFSRHGESEFNVLGRIGGDADLSP 63
YS + E + +DG L++E + N T TF S
Sbjct: 1688 YSAMIFETI----VDGKLKTEKIFKEINEHSTSYTFR---------------------SE 1722
Query: 64 RGRLYA------A------ALARHF-NEAARRTKQTVAGIHATS--E--AIPALNELDAG 106
+G L A A A ++ T AG H S E A+ +L A
Sbjct: 1723 KGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAG-H--SLGEYAALASL----AD 1775
Query: 107 VCEGYSYEEMQD------KFPQEFAWRDQDKLRYRYPWGESYVDIM-------------Q 147
V S E + + Q RD+ G S ++ +
Sbjct: 1776 V---MSIESLVEVVFYRGMTMQVAVPRDEL--------GRSNYGMIAINPGRVAASFSQE 1824
Query: 148 RIRPVLLELEREDNLLVEMLQFNKDYKNM----S-EEKALDDFQHKMEHFLEVYETINPK 202
++ V+ + + LVE++ +N + N + + +ALD + + F+++ + +
Sbjct: 1825 ALQYVVERVGKRTGWLVEIVNYNVE--NQQYVAAGDLRALDTVTNVLN-FIKLQKIDIIE 1881
Query: 203 LEARYSYVKV 212
L+ S +V
Sbjct: 1882 LQKSLSLEEV 1891
Score = 28.9 bits (64), Expect = 2.7
Identities = 39/222 (17%), Positives = 55/222 (24%), Gaps = 82/222 (36%)
Query: 150 RPVLLEL-EREDNLLV--------EML--QFNKDYKNMSEEKALDD-----------F-- 185
RP+ L E LLV L QFNK +E A DD F
Sbjct: 7 RPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFLG 66
Query: 186 -------QHKMEHFLEVYETINPKLEARY-------SYVKVYDGENTTSPLA----LSTY 227
K+ F +V + E Y + EN T+ + + Y
Sbjct: 67 YVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKNY 126
Query: 228 TYTIIKLTTSGYKTH---------MEIIKL---------NIACVD-------TYRQQPKD 262
I K +L + TY D
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGD 186
Query: 263 ---------CSVLRSTQDALRTVPAHFDTLNMW-----PAPS 290
++R+T DA + + L W P
Sbjct: 187 LIKFSAETLSELIRTTLDAEKVFTQGLNILE-WLENPSNTPD 227
>1sfp_A ASFP; spermadhesin, bovine seminal plasma protein, acidic seminal
fluid protein, CUB domain, X-RAY growth factor; 1.90A
{Bos taurus} SCOP: b.23.1.1
Length = 114
Score = 30.0 bits (68), Expect = 0.35
Identities = 7/36 (19%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 203 LEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSG 238
L +++ DG SP+ +++ +SG
Sbjct: 52 LNCNKESLEIIDGLP-GSPVLGKICEGSLMDYRSSG 86
>2qqm_A Neuropilin-1; VEGF receptor, semaphorin receptor, calcium-binding
domain, angiogenesis, developmental protein,
differentiation; HET: NAG FUC; 2.00A {Homo sapiens}
SCOP: b.18.1.2 b.18.1.2 b.23.1.1
Length = 450
Score = 31.2 bits (70), Expect = 0.38
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 193 LEVYETINPKLEARYSYVKVYDGENTTSPL 222
LE + RY ++++DG P
Sbjct: 58 LEPDSNPPGGMFCRYDRLEIWDGFPDVGPH 87
>2qqo_A Neuropilin-2; VEGF receptor, semaphorin receptor, calcium-binding
domain, developmental protein, differentiation,
glycoprotein, membr neurogenesis; 2.30A {Homo sapiens}
Length = 460
Score = 30.8 bits (69), Expect = 0.48
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 188 KMEHF-LEVYETINPKLEARYSYVKVYDGENTTSPL 222
+ F LE + + +Y ++ ++DG PL
Sbjct: 49 QFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL 84
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 0.70
Identities = 8/34 (23%), Positives = 15/34 (44%), Gaps = 11/34 (32%)
Query: 178 EEKALDDFQHKMEHFLEVYE-------TINPKLE 204
E++AL K++ L++Y I +E
Sbjct: 18 EKQALK----KLQASLKLYADDSAPALAIKATME 47
>2wno_A Tumor necrosis factor-inducible gene 6 protein; glycoprotein, cell
adhesion, extracellular matrix; 2.30A {Homo sapiens}
Length = 149
Score = 28.9 bits (65), Expect = 1.0
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 206 RYSYVKVYDGENTTSPL 222
YV++YD +
Sbjct: 61 LADYVEIYDSYDDVHGF 77
>3obv_E Protein diaphanous homolog 1; autoinhibition, actin, nucleation,
cytoskeleton, structural; HET: SUC; 2.75A {Mus musculus}
PDB: 3o4x_E 2bap_D
Length = 457
Score = 29.5 bits (66), Expect = 1.3
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 143 VDIMQRIRPVLLELERE------------DNLLVEMLQFNKDYKNMSEEKAL-------- 182
++ + P +L+ E +NL + Q K ++ +
Sbjct: 255 AELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEK 314
Query: 183 DDFQHKMEHFLEVYETINPKLEARYSYVK 211
D F KM F++ + KL +S ++
Sbjct: 315 DKFVEKMTSFVKDAQEQYNKLRMMHSNME 343
>1spp_B Major seminal plasma glycoprotein PSP-II; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 116
Score = 28.2 bits (63), Expect = 1.4
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 1/36 (2%)
Query: 203 LEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSG 238
L YV+V+DG + P I ++
Sbjct: 51 LACGKEYVEVFDGL-LSGPSYGKLCAGAAIVFLSTA 85
>1nzi_A Complement C1S component; calcium, innate immunity, modular
structure, CUB, EGF, hydrolase; 1.50A {Homo sapiens}
SCOP: b.23.1.1 g.3.11.1
Length = 159
Score = 28.6 bits (64), Expect = 1.7
Identities = 4/17 (23%), Positives = 7/17 (41%)
Query: 206 RYSYVKVYDGENTTSPL 222
Y V++ G+ L
Sbjct: 51 AYDSVQIISGDTEEGRL 67
>3i0w_A 8-oxoguanine-DNA-glycosylase; OGG, cacogg, DNA, 8-OXOG, 8OXOG,
glycosylase, cytosine, hydrolase,lyase/DNA complex; HET:
8OG; 1.73A {Clostridium acetobutylicum} PDB: 3i0x_A*
3f10_A* 3f0z_A
Length = 290
Score = 29.1 bits (65), Expect = 1.8
Identities = 15/66 (22%), Positives = 27/66 (40%), Gaps = 3/66 (4%)
Query: 122 QEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELERED---NLLVEMLQFNKDYKNMSE 178
Q F W Q+ Y E V++ + V++ E+ N+ E +DY + +
Sbjct: 31 QCFRWHRQENGNYIGIAFEKVVEVQKIGEDVVIYNINEEEFKNVWSEYFDLYRDYGEIKK 90
Query: 179 EKALDD 184
E + D
Sbjct: 91 ELSRDP 96
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease,
SH3-binding, thiol protease, UBL conjugation pathway,
structural genomics; 2.10A {Homo sapiens} SCOP:
a.118.23.1
Length = 144
Score = 28.2 bits (62), Expect = 1.9
Identities = 7/45 (15%), Positives = 19/45 (42%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARY 207
+ +++ D+K + ++ +E E ++ L+ RY
Sbjct: 71 VYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRY 115
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist,
antagonist, LUXR, acylated homoseri lactone,
transcription factor; HET: HL6; 2.00A {Chromobacterium
violaceum} PDB: 3qp5_A*
Length = 265
Score = 28.7 bits (64), Expect = 2.0
Identities = 11/65 (16%), Positives = 24/65 (36%), Gaps = 8/65 (12%)
Query: 56 GGDADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATSEAIPALNELDAGVC----EGY 111
G + + L H ++AA R +A + S + L++ + + G
Sbjct: 158 GKEPGRNAALVAMLNCLTPHLHQAAVR----IANLPPASPSNMPLSQREYDIFHWMSRGK 213
Query: 112 SYEEM 116
+ E+
Sbjct: 214 TNWEI 218
>2qqk_A Neuropilin-2; VEGF receptor, semaphorin receptor, phage-derived
antibody, developmental protein, differentiation,
glycoprotein; HET: NAG; 2.75A {Homo sapiens} PDB: 2qql_A
Length = 579
Score = 29.2 bits (65), Expect = 2.1
Identities = 4/17 (23%), Positives = 13/17 (76%)
Query: 206 RYSYVKVYDGENTTSPL 222
+Y ++++ DG++ ++ L
Sbjct: 62 KYDFIEIRDGDSESADL 78
Score = 28.8 bits (64), Expect = 2.5
Identities = 8/36 (22%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 188 KMEHF-LEVYETINPKLEARYSYVKVYDGENTTSPL 222
+ F LE + + +Y ++ ++DG PL
Sbjct: 168 QFLIFDLEHDPLQVGEGDCKYDWLDIWDGIPHVGPL 203
>2xhi_A N-glycosylase/DNA lyase; lyase-DNA complex, lyase/DNA complex,
separation-OF-function helix-hairpin-helix, DNA repair;
HET: 8OG; 1.55A {Homo sapiens} PDB: 1ko9_A 1lwy_A*
1hu0_A* 1lwv_A* 1lww_A* 2noe_A* 2noh_A* 2nol_A* 1n3c_A*
1fn7_A* 2noz_A* 1yqk_A 1yqr_A* 1yql_A* 1yqm_A* 2noi_A
1ebm_A* 1m3q_A* 1m3h_A* 1n39_A* ...
Length = 360
Score = 28.9 bits (64), Expect = 2.1
Identities = 16/103 (15%), Positives = 31/103 (30%), Gaps = 14/103 (13%)
Query: 122 QEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELERED------------NLLVEMLQF 169
Q F WR+Q + + + Q + + R D + + Q
Sbjct: 58 QSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQL 117
Query: 170 NKDYKNMSEEKALDD--FQHKMEHFLEVYETINPKLEARYSYV 210
+ + D FQ + F V +E +S++
Sbjct: 118 DVTLAQLYHHWGSVDSHFQEVAQKFQGVRLLRQDPIECLFSFI 160
>1v9d_A Diaphanous protein homolog 1; helix bundle, protein binding; 2.60A
{Mus musculus} SCOP: a.207.1.1
Length = 340
Score = 28.6 bits (64), Expect = 2.7
Identities = 15/89 (16%), Positives = 31/89 (34%), Gaps = 20/89 (22%)
Query: 143 VDIMQRIRPVLLELERE------------DNLLVEMLQFNKDYKNMSEEKAL-------- 182
++ + P +L+ E +NL + Q K ++ +
Sbjct: 184 AELCENDHPEVLKFPDELAHVEKASRVSAENLQKSLDQMKKQIADVERDVQNFPAATDEK 243
Query: 183 DDFQHKMEHFLEVYETINPKLEARYSYVK 211
D F KM F++ + KL +S ++
Sbjct: 244 DKFVEKMTSFVKDAQEQYNKLRMMHSNME 272
>1spp_A Major seminal plasma glycoprotein PSP-I; seminal plasma proteins,
spermadhesins, CUB domain architecture, complex (seminal
plasma protein/SPP); 2.40A {Sus scrofa} SCOP: b.23.1.1
Length = 109
Score = 27.3 bits (61), Expect = 2.7
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 203 LEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTS 237
L YV+V +G + L +I+ +S
Sbjct: 48 LTCGKEYVEVLEGAPGSKSLGKFCEGLSILNRGSS 82
>3fjy_A Probable MUTT1 protein; dimer, protein structure initiative II),
NYSGXRC, 11181H, structural genomics; 2.15A
{Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Length = 364
Score = 28.3 bits (62), Expect = 2.9
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 14/99 (14%)
Query: 18 DGPLQSEVLSYISNFRPTPKTFYFSRHGESEFN-VLGRIGGDADLSPRGRLYAAALARHF 76
D + + + T + RH ++E + ++P+G A AL R
Sbjct: 164 DKDTLAVFVDRVQEGAATAQNLLIVRHAKAESRKSWKGTDANRPITPKGAAMAFALNREL 223
Query: 77 N---------EAARRTKQTVAGIHATS----EAIPALNE 102
R ++T+ + + E I L E
Sbjct: 224 ACFNPTRLATSPWLRCQETLQVLSWQTERPMEHINTLTE 262
>1szb_A Mannose binding lectin-associated serine protease-2 related
protein, MAP19 (19KDA)...; calcium, complement, innate
immunity, CUB, EGF; 2.50A {Homo sapiens} SCOP: b.23.1.1
g.3.11.1
Length = 170
Score = 27.6 bits (61), Expect = 3.4
Identities = 5/17 (29%), Positives = 8/17 (47%)
Query: 206 RYSYVKVYDGENTTSPL 222
Y +VK+ G + L
Sbjct: 58 EYDFVKLSSGAKVLATL 74
>2j1d_G DAAM1, disheveled-associated activator of morphogenesis; actin
assembly, protein binding; 2.55A {Homo sapiens} PDB:
2z6e_A
Length = 483
Score = 27.9 bits (62), Expect = 3.9
Identities = 10/61 (16%), Positives = 17/61 (27%), Gaps = 9/61 (14%)
Query: 160 DNLLVEMLQFNKDYKNMSEE---------KALDDFQHKMEHFLEVYETINPKLEARYSYV 210
L E+ K + E + D F + F+ V +E +
Sbjct: 295 TELDKEISTLRSGLKAVETELEYQKSQPPQPGDKFVSVVSQFITVASFSFSDVEDLLAEA 354
Query: 211 K 211
K
Sbjct: 355 K 355
>1ku1_A ARF guanine-nucleotide exchange factor 2; SEC7 domain, guanine
nucleotide exchange factor (GEF), ARF small GTP-binding
proteins; 1.93A {Saccharomyces cerevisiae} SCOP:
a.118.3.1 PDB: 1re0_B*
Length = 230
Score = 27.1 bits (60), Expect = 5.5
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 172 DYKNMSEEKALDDFQHK-------------MEHFLEVYETINPKLEARYSYVKVYDGENT 218
D+ + ++A+ K +E F Y ++ S D
Sbjct: 96 DFSGLRVDEAIRILLTKFRLPGESQQIERIIEAFSSAYCENQDYDPSKISDNAEDDISTV 155
Query: 219 -TSPLALSTYTYTIIKLTTSGY----KTHM 243
++ +Y+II L T + K HM
Sbjct: 156 QPDADSVFILSYSIIMLNTDLHNPQVKEHM 185
>3kq4_B Cubilin; protein-protein complex, cobalt, cobalt transport, disease
M disulfide bond, glycoprotein, secreted, transport,
choleste metabolism; HET: NAG BMA MAN B12; 3.30A {Homo
sapiens}
Length = 457
Score = 27.2 bits (60), Expect = 6.8
Identities = 7/17 (41%), Positives = 10/17 (58%)
Query: 206 RYSYVKVYDGENTTSPL 222
Y+ VYDG ++ S L
Sbjct: 288 TLDYLAVYDGPSSNSHL 304
>2q32_A Heme oxygenase 2, HO-2; structural genomics medical relevance,
structural genomics community request, protein structure
in PSI; HET: OXN; 2.40A {Homo sapiens} PDB: 2qpp_A*
2rgz_A*
Length = 264
Score = 26.8 bits (58), Expect = 9.1
Identities = 19/99 (19%), Positives = 28/99 (28%)
Query: 140 ESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETI 199
E + + LE E + F Y M + + F E +E
Sbjct: 65 ELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENWEEQ 124
Query: 200 NPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSG 238
+A YV+ P L + YT SG
Sbjct: 125 VQAPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSG 163
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A
{Homo sapiens}
Length = 146
Score = 26.2 bits (57), Expect = 9.2
Identities = 12/53 (22%), Positives = 22/53 (41%)
Query: 156 LEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYS 208
+ L +E L ++DYK+ + D + E E + +L RY+
Sbjct: 63 YNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLKRYT 115
>3er9_B Poly(A) polymerase catalytic subunit; polyadenylate polymerase,
translocation, single tranded RNA polymerase, RNA
protein complex, processivity, heterodimer; HET: 3AT;
2.06A {Vaccinia virus WR} PDB: 3er8_C* 3erc_C* 3owg_A
2ga9_D* 2gaf_D
Length = 479
Score = 26.9 bits (59), Expect = 9.2
Identities = 24/100 (24%), Positives = 40/100 (40%), Gaps = 12/100 (12%)
Query: 144 DIMQRIRPVLLELEREDNLLV--EMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINP 201
D M + + + DN+ + Q K S+ L+D E F T+
Sbjct: 260 DTMNVVPKIFI-----DNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATM-- 312
Query: 202 KLE-ARYSYVKVYDGENTTSPL-ALSTYTYTIIKLTTSGY 239
LE RY++ V+DG+ P+ + I+ +TT Y
Sbjct: 313 -LEYVRYTHGIVFDGKRNNMPMKCIIDENNRIVTVTTKDY 351
>1n45_A Heme oxygenase 1, HO-1; alpha helices, heme-binding site,
oxidoreductase; HET: HEM; 1.50A {Homo sapiens} SCOP:
a.132.1.1 PDB: 1n3u_A* 1ozr_A* 1ozw_A* 1s13_A* 1s8c_A*
1t5p_A* 1twn_A* 1twr_A* 3czy_A* 3hok_A* 3k4f_A* 3tgm_A*
1xjz_A* 1xk3_A* 1xk2_A* 1ozl_A* 1oyk_A* 1oze_A* 1oyl_A*
1xk0_A* ...
Length = 233
Score = 26.7 bits (58), Expect = 9.9
Identities = 20/101 (19%), Positives = 32/101 (31%)
Query: 138 WGESYVDIMQRIRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYE 197
+ + +M + + + LE E E F Y + Q + ++
Sbjct: 43 TRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRWQ 102
Query: 198 TINPKLEARYSYVKVYDGENTTSPLALSTYTYTIIKLTTSG 238
+ P A YVK T P L + YT SG
Sbjct: 103 EVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSG 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0787 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,598,646
Number of extensions: 276158
Number of successful extensions: 672
Number of sequences better than 10.0: 1
Number of HSP's gapped: 629
Number of HSP's successfully gapped: 84
Length of query: 295
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 202
Effective length of database: 4,105,140
Effective search space: 829238280
Effective search space used: 829238280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (25.6 bits)