RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2709
(295 letters)
>d1bifa2 c.60.1.4 (A:250-468)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
phosphatase domain {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 219
Score = 111 bits (279), Expect = 2e-30
Identities = 95/251 (37%), Positives = 134/251 (53%), Gaps = 46/251 (18%)
Query: 40 YFSRHGESEFNVLGRIGGDADLSPRGRLYAAALARHFNEA-----------ARRTKQTVA 88
Y RHGESE N+ GRIGGD LSPRGR ++ LA+ ++ +RT QT
Sbjct: 3 YLCRHGESELNLKGRIGGDPGLSPRGREFSKHLAQFISDQNIKDLKVFTSQMKRTIQTAE 62
Query: 89 GIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQR 148
+ E LNE+DAGVCE +YEE+QD +P EFA RDQDK RYRYP GESY D++QR
Sbjct: 63 ALSVPYEQFKVLNEIDAGVCEEMTYEEIQDHYPLEFALRDQDKYRYRYPKGESYEDLVQR 122
Query: 149 IRPVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYS 208
+ PV++ELER++N+LV H+ +
Sbjct: 123 LEPVIMELERQENVLV--------------------ICHQA--------VMR-------C 147
Query: 209 YVKVYDGENTTSPLALSTYTYTIIKLTTSGYKTHMEIIKLNIACVDTYRQQPKDCSVLRS 268
+ + + L +T++KLT Y +E I LN+A V+T+R +P++ + R
Sbjct: 148 LLAYFLDKAAEELPYLKCPLHTVLKLTPVAYGCKVESIFLNVAAVNTHRDRPQNVDISRP 207
Query: 269 TQDALRTVPAH 279
+++AL TVPAH
Sbjct: 208 SEEALVTVPAH 218
>d1fzta_ c.60.1.1 (A:) Phosphoglycerate mutase {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 211
Score = 77.3 bits (189), Expect = 1e-17
Identities = 29/146 (19%), Positives = 43/146 (29%), Gaps = 20/146 (13%)
Query: 31 NFRPTPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAARRTKQTVA 88
P +RHGESE+N L G D LS G A +
Sbjct: 2 TTEAAPNLLVLTRHGESEWNKLNLFTGWKDPALSETGIKEAKLGGERLKSRGYKFDIAFT 61
Query: 89 GIHATSEAI------------------PALNELDAGVCEGYSYEEMQDKFPQEFAWRDQD 130
++ LNE G +G + ++ + K+ E +
Sbjct: 62 SALQRAQKTCQIILEEVGEPNLETIKSEKLNERYYGDLQGLNKDDARKKWGAEQVQIWRR 121
Query: 131 KLRYRYPWGESYVDIMQRIRPVLLEL 156
P GES D +R+ P
Sbjct: 122 SYDIAPPNGESLKDTAERVLPYYKST 147
>d1e58a_ c.60.1.1 (A:) Phosphoglycerate mutase {Escherichia coli
[TaxId: 562]}
Length = 247
Score = 68.4 bits (166), Expect = 4e-14
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 20/147 (13%)
Query: 40 YFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA------------------ 79
RHGES++N R G D DLS +G A A + E
Sbjct: 6 VLVRHGESQWNKENRFTGWYDVDLSEKGVSEAKAAGKLLKEEGYSFDFAYTSVLKRAIHT 65
Query: 80 ARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWG 139
+ E LNE G +G + E +K+ E + + P
Sbjct: 66 LWNVLDELDQAWLPVEKSWKLNERHYGALQGLNKAETAEKYGDEQVKQWRRGFAVTPPEL 125
Query: 140 ESYVDIMQRIRPVLLELEREDNLLVEM 166
+ P +L ++ L E
Sbjct: 126 TKDDERYPGHDPRYAKLSEKELPLTES 152
>d1xq9a_ c.60.1.1 (A:) Phosphoglycerate mutase {Plasmodium
falciparum [TaxId: 5833]}
Length = 241
Score = 63.8 bits (154), Expect = 2e-12
Identities = 32/178 (17%), Positives = 52/178 (29%), Gaps = 45/178 (25%)
Query: 35 TPKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHF---------------- 76
T T RHGES +N + G D LS +G A A ++
Sbjct: 2 TTYTLVLLRHGESTWNKENKFTGWTDVPLSEKGEEEAIAAGKYLKEKNFKFDVVYTSVLK 61
Query: 77 --NEAARRTKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFP------------- 121
A +T +H LNE G +G + E K+
Sbjct: 62 RAICTAWNVLKTADLLHVPVVKTWRLNERHYGSLQGLNKSETAKKYGEEQVKIWRRSYDI 121
Query: 122 ------------QEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELEREDNLLVEML 167
++ + P+ E D ++R+ P + D L + +
Sbjct: 122 PPPKLDKEDNRWPGHNVVYKNVPKDALPFTECLKDTVERVLPFWFDHIAPDILANKKV 179
>d1h2ea_ c.60.1.1 (A:) Broad specificity phosphatase PhoE (YhfR)
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 207
Score = 62.4 bits (150), Expect = 3e-12
Identities = 33/130 (25%), Positives = 51/130 (39%), Gaps = 15/130 (11%)
Query: 38 TFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFN-------------EAARR 82
T Y +RHGE+++NV R+ G D+ L+ +GR A L + A
Sbjct: 3 TLYLTRHGETKWNVERRMQGWQDSPLTEKGRQDAMRLGKRLEAVELAAIYTSTSGRALET 62
Query: 83 TKQTVAGIHATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESY 142
+ G L E+ G EG +++E++ P F Q Y GE +
Sbjct: 63 AEIVRGGRLIPIYQDERLREIHLGDWEGKTHDEIRQMDPIAFDHFWQAPHLYAPQRGERF 122
Query: 143 VDIMQRIRPV 152
D+ QR
Sbjct: 123 CDVQQRALEA 132
>d1riia_ c.60.1.1 (A:) Phosphoglycerate mutase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 243
Score = 61.5 bits (148), Expect = 8e-12
Identities = 24/135 (17%), Positives = 38/135 (28%), Gaps = 20/135 (14%)
Query: 37 KTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAARRTKQTVAGIHATS 94
+ RHGES++N L G D L+ +G+ A E + +
Sbjct: 4 GSLVLLRHGESDWNALNLFTGWVDVGLTDKGQAEAVRSGELIAEHDLLPDVLYTSLLRRA 63
Query: 95 EA------------------IPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRY 136
LNE G +G E + ++ +E +
Sbjct: 64 ITTAHLALDSADRLWIPVRRSWRLNERHYGALQGLDKAETKARYGEEQFMAWRRSYDTPP 123
Query: 137 PWGESYVDIMQRIRP 151
P E Q P
Sbjct: 124 PPIERGSQFSQDADP 138
>d1qhfa_ c.60.1.1 (A:) Phosphoglycerate mutase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 240
Score = 54.2 bits (129), Expect = 3e-09
Identities = 25/166 (15%), Positives = 50/166 (30%), Gaps = 6/166 (3%)
Query: 36 PKTFYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAARRTKQTVAGIHAT 93
PK RHG+SE+N G D LS +G+ AA E +
Sbjct: 1 PK-LVLVRHGQSEWNEKNLFTGWVDVKLSAKGQQEAARAGELLKEKKVYPDVLYTSKLSR 59
Query: 94 SEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQ---RIR 150
+ + A + + +DK +GE + + +
Sbjct: 60 AIQTANIALEKADRLWIPVNRSWRLNERHYGDLQGKDKAETLKKFGEEKFNTYRRSFDVP 119
Query: 151 PVLLELEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVY 196
P ++ + + D + E ++L ++ + +
Sbjct: 120 PPPIDASSPFSQKGDERYKYVDPNVLPETESLALVIDRLLPYWQDV 165
>d2hhja1 c.60.1.1 (A:3-250) Phosphoglycerate mutase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 248
Score = 50.4 bits (119), Expect = 6e-08
Identities = 25/166 (15%), Positives = 41/166 (24%), Gaps = 49/166 (29%)
Query: 40 YFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEA------------------ 79
RHGE +N R D L+ G A +
Sbjct: 5 IMLRHGEGAWNKENRFCSWVDQKLNSEGMEEARNCGKQLKALNFEFDLVFTSVLNRSIHT 64
Query: 80 ARRTKQTVAGIHATSEAIPALNELDAGVCEGYSY-------------------------- 113
A + + E+ LNE G G +
Sbjct: 65 AWLILEELGQEWVPVESSWRLNERHYGALIGLNREQMALNHGEEQVRLWRRSYNVTPPPI 124
Query: 114 ---EEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLEL 156
+ + ++ D + P ES D+++R+ P E
Sbjct: 125 EESHPYYQEIYNDRRYKVCDVPLDQLPRSESLKDVLERLLPYWNER 170
>d1v37a_ c.60.1.1 (A:) Alpha-ribazole-5'-phosphate phosphatase
{Thermus thermophilus [TaxId: 274]}
Length = 171
Score = 47.8 bits (112), Expect = 2e-07
Identities = 29/132 (21%), Positives = 48/132 (36%), Gaps = 12/132 (9%)
Query: 39 FYFSRHGESEFNVLGRIGG--DADLSPRGRLYAAALARHFNEAARRT------KQTVAGI 90
+ RHGE+ +N GR+ G D L+ G A L + ++T
Sbjct: 3 LWLVRHGETLWNREGRLLGWTDLPLTAEGEAQARRLKGALPSLPAFSSDLLRARRTAELA 62
Query: 91 HATSEAIPALNELDAGVCEGYSYEEMQDKFPQEFAWRDQDKLRYRYPWGESYVDIMQRIR 150
+ P L E+ G EG +E + ++ + + P GES +R+
Sbjct: 63 GFSPRLYPELREIHFGALEGALWETLDPRYKEALLRFQG----FHPPGGESLSAFQERVF 118
Query: 151 PVLLELEREDNL 162
L L+ L
Sbjct: 119 RFLEGLKAPAVL 130
>d2a9ua1 a.118.23.1 (A:6-139) Ubiquitin carboxyl-terminal hydrolase
8, USH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 134
Score = 30.2 bits (68), Expect = 0.13
Identities = 7/46 (15%), Positives = 19/46 (41%)
Query: 163 LVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYS 208
+ +++ D+K + ++ +E E ++ L+ RY
Sbjct: 64 VYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKLRYE 109
>d2noha2 d.129.1.2 (A:12-135) 8-oxoguanine glycosylase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 28.4 bits (63), Expect = 0.56
Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 7/83 (8%)
Query: 122 QEFAWRDQDKLRYRYPWGESYVDIMQRIRPVLLELERED-----NLLVEMLQFNKDYKNM 176
Q F WR+Q + + + Q + + R D + L+ + Y +
Sbjct: 32 QSFRWREQSPAHWSGVLADQVWTLTQTEEQLHCTVYRGDKSQASRPTPDELEAVRKYFQL 91
Query: 177 --SEEKALDDFQHKMEHFLEVYE 197
+ + + HF EV +
Sbjct: 92 DVTLAQLYHHWGSVDSHFQEVAQ 114
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 28.8 bits (63), Expect = 0.64
Identities = 13/50 (26%), Positives = 29/50 (58%)
Query: 165 EMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINPKLEARYSYVKVYD 214
++ + DY N ++A +DF ++E + YE+++ + + SY+K+ D
Sbjct: 134 QVKLGSPDYVNRDSDEATEDFMRRIECYENSYESLDEEQDRDLSYIKIMD 183
Score = 27.6 bits (60), Expect = 1.3
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 8 AGENMNVRFIDGPLQSEVLSYISNFRPTPK 37
G++ V + +QS ++ Y+ N TP+
Sbjct: 184 VGQSYVVNRVADHIQSRIVYYLMNIHVTPR 213
>d2ga9d1 e.69.1.1 (D:12-479) Poly(A) polymerase catalytic subunit,
PAPL {Vaccinia virus [TaxId: 10245]}
Length = 468
Score = 28.6 bits (64), Expect = 0.95
Identities = 24/100 (24%), Positives = 39/100 (39%), Gaps = 12/100 (12%)
Query: 144 DIMQRIRPVLLELEREDNLLV--EMLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETINP 201
D M + + + DN+ + Q K S+ L+D E F T+
Sbjct: 249 DTMNVVPKIFI-----DNIYIVDPTFQLLNMIKMFSQIDRLEDLSKDPEKFNARMATM-- 301
Query: 202 KLE-ARYSYVKVYDGENTTSPLALS-TYTYTIIKLTTSGY 239
LE RY++ V+DG+ P+ I+ +TT Y
Sbjct: 302 -LEYVRYTHGIVFDGKRNNMPMKCIIDENNRIVTVTTKDY 340
>d2ooka1 c.13.2.2 (A:2-126) Hypothetical protein Sfri0576
{Shewanella frigidimarina [TaxId: 56812]}
Length = 125
Score = 25.5 bits (56), Expect = 4.7
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 1/51 (1%)
Query: 146 MQRIRPVLLE-LEREDNLLVEMLQFNKDYKNMSEEKALDDFQHKMEHFLEV 195
I P+L L + D V + + A DD + ++H E
Sbjct: 33 YLVITPMLEGALSQVDQPKVSLFLDATELDGWDLRAAWDDLKLGLKHKSEF 83
>d1xkga1 d.3.1.1 (A:4-305) Major mite fecal allergen der p 1
{House-dust mite (Dermatophagoides pteronyssinus)
[TaxId: 6956]}
Length = 302
Score = 26.2 bits (56), Expect = 5.7
Identities = 8/35 (22%), Positives = 14/35 (40%), Gaps = 6/35 (17%)
Query: 166 MLQFNKDYKNMSEEKALDDFQHKMEHFLEVYETIN 200
FNK Y +E + ++FLE + +
Sbjct: 9 KKAFNKSYATFEDE------EAARKNFLESVKYVQ 37
>d2c0ga1 a.71.1.1 (A:1146-1251) Windbeutel, C-terminal domain {Fruit
fly (Drosophila melanogaster) [TaxId: 7227]}
Length = 106
Score = 24.8 bits (54), Expect = 6.2
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 15/57 (26%)
Query: 137 PWGESYVDIMQRIRPVLLE-----LEREDNLLVEMLQFNKDYKNMSEEKALDDFQHK 188
+Y+ M++I E LE E L+ + ++E K ++ K
Sbjct: 44 QNARAYLIYMRKI----HEVGYDFLEEETKRLLRLKA-----GKVTEAKK-EELLRK 90
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.134 0.394
Gapped
Lambda K H
0.267 0.0643 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,110,476
Number of extensions: 52162
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 164
Number of HSP's successfully gapped: 23
Length of query: 295
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 210
Effective length of database: 1,240,546
Effective search space: 260514660
Effective search space used: 260514660
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.0 bits)