Query psy271
Match_columns 191
No_of_seqs 210 out of 1911
Neff 8.7
Searched_HMMs 29240
Date Fri Aug 16 23:14:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy271.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/271hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wd2_A Ariadne-1 protein homol 99.9 2.3E-24 8E-29 133.7 0.7 56 116-171 1-58 (60)
2 3oaa_A ATP synthase subunit al 99.6 1.4E-15 4.9E-20 129.7 5.0 99 1-99 62-161 (513)
3 1fx0_A ATP synthase alpha chai 99.5 3.7E-15 1.3E-19 127.5 4.8 99 1-99 63-162 (507)
4 2ck3_A ATP synthase subunit al 99.5 3.8E-15 1.3E-19 127.5 4.3 98 1-98 62-160 (510)
5 2qe7_A ATP synthase subunit al 99.5 3.8E-15 1.3E-19 127.3 4.1 98 1-98 62-160 (502)
6 2r9v_A ATP synthase subunit al 99.5 5.8E-15 2E-19 126.3 3.5 98 1-98 75-173 (515)
7 3gqb_B V-type ATP synthase bet 99.5 1.1E-14 3.8E-19 123.2 3.6 99 1-99 46-146 (464)
8 3vr4_D V-type sodium ATPase su 99.5 1.7E-14 5.9E-19 122.2 4.4 99 1-99 50-150 (465)
9 2c61_A A-type ATP synthase non 99.5 1.2E-14 4.1E-19 123.6 2.9 99 1-99 52-151 (469)
10 1fx0_B ATP synthase beta chain 99.4 7.6E-14 2.6E-18 119.2 4.8 96 4-99 68-164 (498)
11 2ck3_D ATP synthase subunit be 99.4 1.6E-13 5.4E-18 116.8 4.9 97 3-99 55-152 (482)
12 1sky_E F1-ATPase, F1-ATP synth 99.4 2.9E-13 9.8E-18 115.4 3.8 92 3-94 52-144 (473)
13 3vr4_A V-type sodium ATPase ca 99.1 1.9E-11 6.4E-16 105.8 2.6 56 2-57 46-101 (600)
14 3gqb_A V-type ATP synthase alp 99.1 2.2E-11 7.5E-16 105.0 1.5 56 2-57 39-94 (578)
15 3mfy_A V-type ATP synthase alp 99.1 1.7E-11 5.9E-16 105.7 -0.0 59 1-59 39-97 (588)
16 2dpy_A FLII, flagellum-specifi 99.0 1.9E-10 6.6E-15 97.7 4.9 91 2-92 51-148 (438)
17 2ct7_A Ring finger protein 31; 98.5 4.3E-08 1.5E-12 64.8 2.5 68 39-111 3-84 (86)
18 2ct7_A Ring finger protein 31; 98.1 2.4E-06 8.2E-11 56.3 4.0 39 121-159 25-63 (86)
19 2jmo_A Parkin; IBR, E3 ligase, 97.9 4.8E-06 1.6E-10 54.1 2.4 40 120-159 24-70 (80)
20 2obl_A ESCN; ATPase, hydrolase 97.7 8.6E-06 2.9E-10 67.1 1.0 62 33-94 2-64 (347)
21 2jmo_A Parkin; IBR, E3 ligase, 97.2 5.9E-05 2E-09 48.8 0.6 57 38-99 3-75 (80)
22 3lrq_A E3 ubiquitin-protein li 94.0 0.014 4.9E-07 38.8 0.8 36 121-161 22-57 (100)
23 2ysl_A Tripartite motif-contai 93.2 0.08 2.7E-06 32.6 3.3 33 121-159 20-52 (73)
24 2k4x_A 30S ribosomal protein S 92.7 0.057 2E-06 32.0 2.0 30 120-149 17-46 (55)
25 1pft_A TFIIB, PFTFIIBN; N-term 92.6 0.071 2.4E-06 30.7 2.3 30 120-149 4-34 (50)
26 2jrp_A Putative cytoplasmic pr 92.4 0.12 4.1E-06 33.0 3.3 36 122-159 3-43 (81)
27 2ct2_A Tripartite motif protei 92.3 0.049 1.7E-06 34.8 1.5 38 121-160 15-52 (88)
28 2jr6_A UPF0434 protein NMA0874 92.1 0.1 3.5E-06 32.3 2.6 29 121-149 8-36 (68)
29 3j20_Y 30S ribosomal protein S 92.0 0.099 3.4E-06 30.3 2.4 29 121-149 19-47 (50)
30 1iym_A EL5; ring-H2 finger, ub 91.9 0.16 5.6E-06 29.2 3.4 38 121-160 5-42 (55)
31 1e4u_A Transcriptional repress 91.9 0.15 5.2E-06 32.3 3.4 35 122-158 12-46 (78)
32 2ecy_A TNF receptor-associated 91.6 0.1 3.6E-06 31.5 2.3 32 122-159 16-47 (66)
33 2djb_A Polycomb group ring fin 91.4 0.05 1.7E-06 33.6 0.6 35 121-160 15-49 (72)
34 1vq8_Z 50S ribosomal protein L 91.2 0.13 4.3E-06 33.2 2.4 32 120-151 26-57 (83)
35 3ng2_A RNF4, snurf, ring finge 90.8 0.1 3.4E-06 31.9 1.7 40 121-160 10-50 (71)
36 2ysj_A Tripartite motif-contai 90.8 0.067 2.3E-06 32.0 0.8 33 121-159 20-52 (63)
37 2yur_A Retinoblastoma-binding 90.3 0.096 3.3E-06 32.5 1.3 34 122-160 16-49 (74)
38 1wfh_A Zinc finger (AN1-like) 90.2 0.37 1.3E-05 29.3 3.8 41 120-166 14-54 (64)
39 2ecm_A Ring finger and CHY zin 90.2 0.13 4.4E-06 29.6 1.7 38 121-160 5-42 (55)
40 2y43_A E3 ubiquitin-protein li 89.6 0.13 4.5E-06 33.7 1.6 35 122-161 23-57 (99)
41 1wff_A Riken cDNA 2810002D23 p 89.5 0.56 1.9E-05 30.2 4.4 55 120-179 24-80 (85)
42 2ckl_A Polycomb group ring fin 89.5 0.14 4.8E-06 34.2 1.6 36 121-161 15-50 (108)
43 1chc_A Equine herpes virus-1 r 89.1 0.18 6.3E-06 30.4 1.8 34 121-159 5-38 (68)
44 2jne_A Hypothetical protein YF 88.7 0.32 1.1E-05 32.0 2.8 37 121-159 32-73 (101)
45 2ckl_B Ubiquitin ligase protei 88.6 0.11 3.6E-06 37.7 0.6 33 123-160 56-88 (165)
46 2ect_A Ring finger protein 126 88.0 0.96 3.3E-05 27.9 4.8 38 121-161 15-52 (78)
47 1wg2_A Zinc finger (AN1-like) 88.0 0.74 2.5E-05 27.9 3.9 40 121-166 15-54 (64)
48 2js4_A UPF0434 protein BB2007; 87.7 0.46 1.6E-05 29.5 3.0 29 121-149 8-36 (70)
49 2egp_A Tripartite motif-contai 87.6 0.32 1.1E-05 30.2 2.3 33 122-160 13-45 (79)
50 2hf1_A Tetraacyldisaccharide-1 87.6 0.42 1.4E-05 29.5 2.7 29 121-149 8-36 (68)
51 2d8t_A Dactylidin, ring finger 87.4 0.24 8.2E-06 30.3 1.6 35 121-161 15-49 (71)
52 1wfl_A Zinc finger protein 216 87.4 0.41 1.4E-05 30.0 2.6 40 121-166 25-64 (74)
53 2pk7_A Uncharacterized protein 87.4 0.49 1.7E-05 29.2 3.0 29 121-149 8-36 (69)
54 2kiz_A E3 ubiquitin-protein li 87.3 0.32 1.1E-05 29.4 2.1 37 121-160 14-50 (69)
55 2ep4_A Ring finger protein 24; 87.1 0.2 6.8E-06 30.8 1.1 37 121-160 15-51 (74)
56 4ayc_A E3 ubiquitin-protein li 86.6 0.32 1.1E-05 34.1 2.1 34 122-161 54-87 (138)
57 1x4j_A Ring finger protein 38; 86.3 0.15 5.1E-06 31.6 0.2 37 121-160 23-59 (75)
58 2xeu_A Ring finger protein 4; 85.9 0.13 4.6E-06 30.5 -0.2 39 122-160 4-43 (64)
59 3ztg_A E3 ubiquitin-protein li 85.7 0.15 5.2E-06 32.9 -0.0 33 122-159 14-46 (92)
60 1jm7_A BRCA1, breast cancer ty 85.5 0.71 2.4E-05 30.6 3.3 34 121-160 21-54 (112)
61 2ecn_A Ring finger protein 141 85.3 0.24 8E-06 30.1 0.7 32 121-159 15-46 (70)
62 3h0g_I DNA-directed RNA polyme 85.3 0.63 2.2E-05 31.6 3.0 29 121-149 4-36 (113)
63 1jm7_B BARD1, BRCA1-associated 85.3 0.51 1.7E-05 31.9 2.5 35 120-159 21-55 (117)
64 2ecj_A Tripartite motif-contai 84.7 0.15 5E-06 29.7 -0.4 33 121-159 15-47 (58)
65 2ea6_A Ring finger protein 4; 84.6 0.2 6.8E-06 30.2 0.1 39 121-159 15-54 (69)
66 2ecv_A Tripartite motif-contai 84.4 0.64 2.2E-05 29.0 2.5 33 121-159 19-51 (85)
67 2kpi_A Uncharacterized protein 84.1 0.94 3.2E-05 26.7 3.0 27 121-149 10-38 (56)
68 2jny_A Uncharacterized BCR; st 83.9 0.83 2.8E-05 28.0 2.7 30 120-149 9-38 (67)
69 3fl2_A E3 ubiquitin-protein li 83.7 0.29 9.8E-06 33.5 0.7 32 122-159 53-84 (124)
70 1t1h_A Gspef-atpub14, armadill 83.4 0.75 2.6E-05 28.4 2.5 33 122-160 9-41 (78)
71 1wfp_A Zinc finger (AN1-like) 83.1 0.71 2.4E-05 28.8 2.2 42 119-166 23-64 (74)
72 2csy_A Zinc finger protein 183 83.0 0.44 1.5E-05 29.8 1.3 34 121-160 15-48 (81)
73 3knv_A TNF receptor-associated 82.9 0.39 1.3E-05 33.9 1.1 33 122-160 32-64 (141)
74 2ecw_A Tripartite motif-contai 82.9 0.31 1.1E-05 30.5 0.5 33 122-160 20-52 (85)
75 2akl_A PHNA-like protein PA012 82.8 0.83 2.8E-05 31.7 2.7 30 119-149 25-54 (138)
76 2l0b_A E3 ubiquitin-protein li 82.6 0.31 1.1E-05 31.5 0.4 37 122-161 41-77 (91)
77 1twf_I B12.6, DNA-directed RNA 81.3 0.78 2.7E-05 31.6 2.1 29 121-149 4-36 (122)
78 4ap4_A E3 ubiquitin ligase RNF 80.8 0.37 1.3E-05 32.9 0.3 40 121-161 72-113 (133)
79 3l11_A E3 ubiquitin-protein li 80.6 0.74 2.5E-05 30.9 1.8 32 123-160 17-48 (115)
80 3hct_A TNF receptor-associated 80.3 0.41 1.4E-05 32.4 0.4 32 122-159 19-50 (118)
81 3oaa_A ATP synthase subunit al 80.0 1.2 4E-05 38.3 3.2 34 158-191 115-148 (513)
82 1rmd_A RAG1; V(D)J recombinati 79.6 0.53 1.8E-05 31.7 0.8 33 122-160 24-56 (116)
83 2jrp_A Putative cytoplasmic pr 79.2 0.64 2.2E-05 29.7 1.0 28 123-158 33-62 (81)
84 3qt1_I DNA-directed RNA polyme 78.5 0.93 3.2E-05 31.8 1.8 31 119-149 22-56 (133)
85 2ecl_A Ring-box protein 2; RNF 77.3 1.1 3.7E-05 28.2 1.7 25 136-161 40-64 (81)
86 3m7n_A Putative uncharacterize 77.0 1.5 5.1E-05 32.2 2.7 25 122-148 141-165 (179)
87 2yw8_A RUN and FYVE domain-con 76.0 1.7 5.9E-05 27.5 2.4 41 115-157 12-53 (82)
88 1z6u_A NP95-like ring finger p 75.8 0.91 3.1E-05 32.3 1.1 34 121-160 78-111 (150)
89 3vk6_A E3 ubiquitin-protein li 75.2 0.55 1.9E-05 31.2 -0.1 8 124-131 4-11 (101)
90 1v87_A Deltex protein 2; ring- 75.1 1.4 4.7E-05 29.4 1.9 37 122-158 26-74 (114)
91 2qe7_A ATP synthase subunit al 74.7 1.9 6.6E-05 36.9 3.1 34 158-191 115-148 (502)
92 1z60_A TFIIH basal transcripti 74.3 0.36 1.2E-05 28.9 -1.1 30 122-154 16-45 (59)
93 1twf_L ABC10-alpha, DNA-direct 73.5 1.3 4.5E-05 27.4 1.3 24 123-147 30-53 (70)
94 1dl6_A Transcription factor II 73.4 2.8 9.4E-05 24.8 2.7 26 121-146 11-37 (58)
95 2ck3_A ATP synthase subunit al 73.1 2 7E-05 36.8 2.8 34 158-191 115-148 (510)
96 3hcs_A TNF receptor-associated 72.8 0.88 3E-05 32.8 0.4 32 122-159 19-50 (170)
97 4ap4_A E3 ubiquitin ligase RNF 72.3 1.3 4.5E-05 30.0 1.3 41 120-161 6-48 (133)
98 3u5c_f 40S ribosomal protein S 72.1 2.3 8E-05 30.3 2.6 31 121-151 118-150 (152)
99 1weo_A Cellulose synthase, cat 71.4 3 0.0001 27.0 2.6 40 82-138 36-75 (93)
100 1x4u_A Zinc finger, FYVE domai 70.9 4.1 0.00014 25.8 3.3 36 120-157 13-48 (84)
101 2y1n_A E3 ubiquitin-protein li 70.6 4.2 0.00014 33.6 4.1 33 121-159 332-364 (389)
102 1wfk_A Zinc finger, FYVE domai 70.3 3.1 0.0001 26.8 2.6 34 121-156 9-42 (88)
103 1fx0_A ATP synthase alpha chai 70.2 2.5 8.7E-05 36.2 2.8 34 158-191 116-149 (507)
104 2r9v_A ATP synthase subunit al 69.5 2.1 7E-05 36.8 2.0 34 158-191 128-161 (515)
105 1wii_A Hypothetical UPF0222 pr 69.2 2.9 0.0001 26.8 2.3 28 122-149 24-57 (85)
106 1joc_A EEA1, early endosomal a 68.4 3.6 0.00012 28.3 2.8 35 121-157 69-103 (125)
107 3t7l_A Zinc finger FYVE domain 68.2 4.7 0.00016 25.9 3.2 37 120-158 19-55 (90)
108 4esj_A Type-2 restriction enzy 66.7 5.8 0.0002 30.5 3.8 37 111-148 25-65 (257)
109 4a0k_B E3 ubiquitin-protein li 66.0 1.2 4.2E-05 30.4 0.0 37 123-160 61-99 (117)
110 1z2q_A LM5-1; membrane protein 66.0 4.2 0.00014 25.8 2.6 36 120-157 20-55 (84)
111 1x4w_A Hypothetical protein FL 65.2 2.7 9.2E-05 25.7 1.4 42 120-166 14-57 (67)
112 2xzm_9 RPS31E; ribosome, trans 65.1 4.7 0.00016 29.9 3.0 30 121-151 113-143 (189)
113 1y02_A CARP2, FYVE-ring finger 64.4 3.6 0.00012 28.2 2.1 36 120-157 18-53 (120)
114 1k81_A EIF-2-beta, probable tr 63.9 4.3 0.00015 21.5 1.9 26 123-148 2-30 (36)
115 2f9y_B Acetyl-coenzyme A carbo 63.5 1.6 5.5E-05 34.9 0.2 32 120-151 23-55 (304)
116 3dpl_R Ring-box protein 1; ubi 63.0 3.4 0.00012 27.5 1.8 25 135-160 64-88 (106)
117 1g25_A CDK-activating kinase a 62.4 4.4 0.00015 23.8 2.1 16 119-134 41-56 (65)
118 1dvp_A HRS, hepatocyte growth 62.4 5 0.00017 30.2 2.8 34 122-157 162-195 (220)
119 1qyp_A RNA polymerase II; tran 62.1 7.4 0.00025 22.6 3.0 11 121-131 15-25 (57)
120 1wim_A KIAA0161 protein; ring 62.0 1.3 4.4E-05 28.6 -0.5 35 121-159 5-40 (94)
121 3v2d_5 50S ribosomal protein L 58.3 4 0.00014 24.3 1.3 23 120-147 29-51 (60)
122 3h0g_L DNA-directed RNA polyme 57.5 4.5 0.00015 24.4 1.4 27 122-149 22-48 (63)
123 3zyq_A Hepatocyte growth facto 56.0 7.5 0.00026 29.4 2.8 34 122-157 165-198 (226)
124 2zjr_Z 50S ribosomal protein L 54.1 6.2 0.00021 23.5 1.6 23 120-147 29-51 (60)
125 2apo_B Ribosome biogenesis pro 53.1 3 0.0001 24.9 0.1 14 119-132 4-17 (60)
126 1nui_A DNA primase/helicase; z 52.9 8.6 0.0003 29.4 2.8 23 122-147 15-41 (255)
127 3nw0_A Non-structural maintena 51.0 18 0.00063 27.5 4.3 43 112-159 167-213 (238)
128 3nyb_B Protein AIR2; polya RNA 50.8 9.4 0.00032 24.2 2.2 49 83-156 7-55 (83)
129 2xzf_A Formamidopyrimidine-DNA 50.8 7.4 0.00025 30.4 2.1 14 121-134 242-255 (271)
130 1bor_A Transcription factor PM 50.5 13 0.00043 21.2 2.6 31 121-157 6-36 (56)
131 1vk6_A NADH pyrophosphatase; 1 50.3 26 0.00089 27.1 5.2 30 119-148 105-134 (269)
132 3gqb_B V-type ATP synthase bet 50.3 8.5 0.00029 32.6 2.5 32 160-191 102-133 (464)
133 2yu4_A E3 SUMO-protein ligase 50.1 6.4 0.00022 25.2 1.4 33 122-159 8-40 (94)
134 1ee8_A MUTM (FPG) protein; bet 50.0 8.9 0.0003 29.9 2.4 14 121-134 235-248 (266)
135 4ic3_A E3 ubiquitin-protein li 49.3 3.4 0.00012 25.3 -0.1 31 121-157 24-55 (74)
136 1k82_A Formamidopyrimidine-DNA 48.2 8.5 0.00029 30.0 2.0 14 121-134 240-253 (268)
137 1gh9_A 8.3 kDa protein (gene M 47.5 9.8 0.00033 23.4 1.8 23 123-147 6-28 (71)
138 3u6p_A Formamidopyrimidine-DNA 47.3 8.9 0.00031 30.0 2.0 14 121-134 245-258 (273)
139 1k3x_A Endonuclease VIII; hydr 46.6 9.3 0.00032 29.6 2.0 14 121-134 234-247 (262)
140 2jun_A Midline-1; B-BOX, TRIM, 45.7 9.9 0.00034 24.5 1.8 32 122-156 4-35 (101)
141 2zet_C Melanophilin; complex, 45.5 11 0.00037 26.9 2.1 35 120-155 67-101 (153)
142 2zkr_2 60S ribosomal protein L 45.3 11 0.00038 24.6 1.9 23 122-147 17-39 (97)
143 2fiy_A Protein FDHE homolog; F 45.3 10 0.00035 30.3 2.1 35 122-156 183-231 (309)
144 1zbd_B Rabphilin-3A; G protein 45.1 11 0.00038 26.2 2.0 37 120-157 54-90 (134)
145 1vfy_A Phosphatidylinositol-3- 44.7 8.9 0.0003 23.5 1.3 33 122-156 12-44 (73)
146 1loi_A Cyclic 3',5'-AMP specif 44.6 3.9 0.00013 19.3 -0.3 12 148-159 6-17 (26)
147 1fx0_B ATP synthase beta chain 44.4 15 0.00051 31.4 3.1 32 160-191 120-151 (498)
148 1dxg_A Desulforedoxin; non-hem 44.4 18 0.00061 18.9 2.3 21 122-142 7-28 (36)
149 2c2l_A CHIP, carboxy terminus 44.0 11 0.00038 28.7 2.1 32 123-160 210-241 (281)
150 2lli_A Protein AIR2; RNA surve 43.5 10 0.00035 25.7 1.6 54 80-155 3-72 (124)
151 2e72_A POGO transposable eleme 42.7 10 0.00036 21.4 1.3 31 120-158 11-41 (49)
152 2f9i_B Acetyl-coenzyme A carbo 41.8 3.6 0.00012 32.5 -1.0 31 121-151 30-61 (285)
153 2ck3_D ATP synthase subunit be 40.1 15 0.0005 31.3 2.4 33 159-191 107-139 (482)
154 3vr4_D V-type sodium ATPase su 39.5 14 0.00046 31.3 2.1 32 160-191 106-137 (465)
155 2aus_D NOP10, ribosome biogene 39.5 9 0.00031 22.8 0.7 13 120-132 4-16 (60)
156 1x4v_A Hypothetical protein LO 39.4 16 0.00056 21.8 1.9 27 121-152 12-40 (63)
157 3htk_C E3 SUMO-protein ligase 37.5 13 0.00045 29.0 1.6 35 121-160 181-215 (267)
158 3cc2_Z 50S ribosomal protein L 37.2 19 0.00065 24.3 2.1 30 120-149 59-88 (116)
159 1nee_A EIF-2-beta, probable tr 37.2 17 0.00057 25.5 1.9 26 123-148 104-132 (138)
160 1sky_E F1-ATPase, F1-ATP synth 37.0 17 0.00059 30.7 2.4 30 162-191 107-137 (473)
161 2c61_A A-type ATP synthase non 36.0 22 0.00074 30.1 2.8 30 162-191 109-138 (469)
162 3jyw_9 60S ribosomal protein L 36.0 33 0.0011 21.1 2.9 30 120-149 25-54 (72)
163 3j21_g 50S ribosomal protein L 35.4 9.7 0.00033 21.9 0.4 11 120-130 13-23 (51)
164 3j21_i 50S ribosomal protein L 35.3 37 0.0013 21.5 3.1 30 120-149 34-63 (83)
165 2k5r_A Uncharacterized protein 34.9 18 0.00063 23.6 1.7 14 121-134 8-21 (97)
166 3mpx_A FYVE, rhogef and PH dom 33.6 8.8 0.0003 31.6 0.0 39 116-156 369-408 (434)
167 2a20_A Regulating synaptic mem 31.8 18 0.00062 21.4 1.1 36 121-158 9-44 (62)
168 4a17_Y RPL37A, 60S ribosomal p 31.7 27 0.00091 23.1 2.1 30 120-149 35-64 (103)
169 2yho_A E3 ubiquitin-protein li 31.5 9.5 0.00033 23.6 -0.1 32 121-158 18-50 (79)
170 3k7a_M Transcription initiatio 30.7 23 0.00079 28.4 2.1 27 121-147 21-50 (345)
171 3u50_C Telomerase-associated p 30.7 27 0.00093 25.3 2.2 26 122-148 43-68 (172)
172 2ct0_A Non-SMC element 1 homol 30.5 22 0.00074 21.9 1.5 36 120-160 14-49 (74)
173 2d74_B Translation initiation 30.1 22 0.00074 25.2 1.6 28 122-149 105-135 (148)
174 2kdx_A HYPA, hydrogenase/ureas 29.7 15 0.00051 24.7 0.7 9 123-131 92-100 (119)
175 1ffk_W Ribosomal protein L37AE 29.2 35 0.0012 21.0 2.2 30 120-149 26-55 (73)
176 1wjv_A Cell growth regulating 28.7 29 0.001 21.7 1.8 26 124-149 13-47 (79)
177 3iz5_m 60S ribosomal protein L 28.5 49 0.0017 21.3 2.9 30 120-149 35-64 (92)
178 1lv3_A Hypothetical protein YA 28.3 14 0.00048 22.5 0.3 13 120-132 8-20 (68)
179 3po3_S Transcription elongatio 28.2 44 0.0015 24.2 3.0 9 122-130 138-146 (178)
180 2i5o_A DNA polymerase ETA; zin 27.3 25 0.00085 18.8 1.1 12 121-132 9-20 (39)
181 2e9h_A EIF-5, eukaryotic trans 27.1 80 0.0027 22.5 4.1 33 115-148 98-135 (157)
182 1qxf_A GR2, 30S ribosomal prot 26.9 63 0.0022 19.5 3.0 33 123-155 9-42 (66)
183 3w0f_A Endonuclease 8-like 3; 26.8 37 0.0013 26.7 2.5 29 122-155 252-281 (287)
184 2pp6_A Gifsy-2 prophage ATP-bi 26.6 65 0.0022 21.1 3.3 33 5-37 48-80 (102)
185 2vje_B MDM4 protein; proto-onc 26.6 37 0.0013 19.7 2.0 13 121-133 44-56 (63)
186 3cw2_K Translation initiation 25.9 19 0.00065 25.2 0.6 27 122-148 104-133 (139)
187 3izc_m 60S ribosomal protein R 25.5 55 0.0019 21.1 2.7 30 120-149 35-64 (92)
188 2d8s_A Cellular modulator of i 24.9 36 0.0012 21.1 1.8 19 115-133 51-70 (80)
189 2vje_A E3 ubiquitin-protein li 24.4 49 0.0017 19.2 2.3 13 121-133 45-57 (64)
190 3j20_W 30S ribosomal protein S 24.3 73 0.0025 19.0 2.9 33 123-155 17-50 (63)
191 2gmg_A Hypothetical protein PF 24.1 32 0.0011 22.8 1.4 9 141-149 69-77 (105)
192 2kr4_A Ubiquitin conjugation f 23.8 28 0.00095 21.7 1.1 32 122-159 15-46 (85)
193 3k1f_M Transcription initiatio 23.6 53 0.0018 24.1 2.6 27 121-147 21-50 (197)
194 3t6p_A Baculoviral IAP repeat- 23.0 46 0.0016 26.9 2.5 32 120-157 294-326 (345)
195 3bvo_A CO-chaperone protein HS 22.8 35 0.0012 25.4 1.7 12 120-131 9-20 (207)
196 1vyx_A ORF K3, K3RING; zinc-bi 22.4 54 0.0018 19.0 2.1 20 113-132 38-58 (60)
197 2ecg_A Baculoviral IAP repeat- 22.3 18 0.00061 21.8 -0.1 31 121-157 25-56 (75)
198 4ayb_P DNA-directed RNA polyme 22.3 37 0.0013 19.0 1.2 13 120-132 22-34 (48)
199 1wys_A Riken cDNA 2310008M20 p 21.9 79 0.0027 19.5 2.9 28 121-153 14-43 (75)
200 3v43_A Histone acetyltransfera 21.7 80 0.0027 20.7 3.2 64 83-157 28-95 (112)
201 1l1o_C Replication protein A 7 21.7 59 0.002 23.4 2.7 25 122-147 44-70 (181)
202 2g2k_A EIF-5, eukaryotic trans 21.4 57 0.0019 23.6 2.4 28 122-149 97-129 (170)
203 2lcq_A Putative toxin VAPC6; P 21.4 35 0.0012 24.1 1.3 13 122-134 149-161 (165)
204 1wfe_A Riken cDNA 2310008M20 p 20.9 36 0.0012 21.6 1.2 28 121-153 25-54 (86)
205 2kre_A Ubiquitin conjugation f 20.4 35 0.0012 22.0 1.1 33 122-160 30-62 (100)
206 2k5c_A Uncharacterized protein 20.3 50 0.0017 20.9 1.7 21 111-131 41-61 (95)
207 1x4s_A Protein FON, zinc finge 20.2 31 0.0011 20.4 0.7 26 139-164 26-52 (59)
No 1
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.88 E-value=2.3e-24 Score=133.75 Aligned_cols=56 Identities=52% Similarity=1.171 Sum_probs=52.5
Q ss_pred HHHhcCCCCCCCCcceEecCCcCceEeCC--CCcceecccccccccCCCCCCCCCCcc
Q psy271 116 YISAHTKDCPKCHICIEKNGGCNHMQCYH--CKHEFCWMCLGNTIDGKGPLKTTTRFR 171 (191)
Q Consensus 116 ~~~~~~k~CP~C~~~i~k~~GC~~m~C~~--C~~~fC~~C~~~~~~~~~~~~~~~~~~ 171 (191)
||++++|+||+|+++|||++|||||+|.+ |+++|||.|+++|+.++..|+.+++|.
T Consensus 1 wi~~~~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~~~~y~C~~y~ 58 (60)
T 1wd2_A 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHGSAWYNCNRYN 58 (60)
T ss_dssp CCCCCCCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGGTSSSSSCSCC
T ss_pred CccccceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCCCccccCCCcc
Confidence 45678999999999999999999999987 999999999999999998999999985
No 2
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=99.56 E-value=1.4e-15 Score=129.72 Aligned_cols=99 Identities=48% Similarity=0.693 Sum_probs=91.7
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
+|++|+++.+.+++|+++.||.+|+.|.++|++++|+||++|||||+|++|+|||+++++..+.++.....+++++.|..
T Consensus 62 ~v~~l~~d~v~~~~~~~~~gi~~G~~V~~tg~~~~VpvG~~lLGRV~d~lG~PiDg~g~i~~~~~~pi~~~ap~~~~R~~ 141 (513)
T 3oaa_A 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPLDHDGFSAVEAIAPGVIERQS 141 (513)
T ss_dssp EEEEECSSCEEEEESSCCSSCCTTCEEECCSCSSEEECSGGGTTCEEETTSCBTTCSCSCCCSCEEESSCCCCCSSSCCC
T ss_pred EEEEeeCCEEEEEEeCCccCCCCCCEEEEcCCCCeEeeCHHHhccchhhcCcCccCCCCCCccceeecccCCCCccccCC
Confidence 48999999999999999999999999999999999999999999999999999999988877777888899999999999
Q ss_pred CCCccccCCcccCc-cchHH
Q psy271 81 VREPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~~ 99 (191)
+.+++.+|+++.|. .++..
T Consensus 142 v~epl~TGikaID~l~Pigr 161 (513)
T 3oaa_A 142 VDQPVQTGYKAVDSMIPIGR 161 (513)
T ss_dssp CCCBCCCSCHHHHHHSCCBT
T ss_pred cCcccccceeeecccccccc
Confidence 99999999999876 34443
No 3
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=99.53 E-value=3.7e-15 Score=127.48 Aligned_cols=99 Identities=43% Similarity=0.709 Sum_probs=91.5
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
+|++|+++.+.+++|+++.||..|+.|.++|++++|++|+++||||+|++|+|||+++++.....|......|+++.|..
T Consensus 63 ~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~ 142 (507)
T 1fx0_A 63 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRS 142 (507)
T ss_dssp EEEEECSSEEEEEECSCGGGCCTTCEEECCCCCCEEEESSSCSSCCCCSSSCCSSSSCCCCCSEEEESSCCCCCSSSBCC
T ss_pred EEEeccCCeEEEEEecCccCCcCCCEEEEeCCcceeecCccceeEEEccCCcCCCCCCCCCCCceeeccCCCCCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999988776667888889999999999
Q ss_pred CCCccccCCcccCc-cchHH
Q psy271 81 VREPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~~ 99 (191)
+.+++.+|+++.|. .++..
T Consensus 143 v~epl~TGiraID~l~Pigr 162 (507)
T 1fx0_A 143 VYEPLQTGLIAIDAMIPVGR 162 (507)
T ss_dssp CCSBCCCSCTTTTTTSCCBT
T ss_pred cCCcccccceeccccccccc
Confidence 99999999999887 35544
No 4
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=99.52 E-value=3.8e-15 Score=127.50 Aligned_cols=98 Identities=79% Similarity=1.218 Sum_probs=90.3
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
+|++|+++.+.+++|+++.||..|+.|.++|++++|++|+++||||+|++|+|||+++++....+|......|+++.|..
T Consensus 62 ~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvg~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~ 141 (510)
T 2ck3_A 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRIS 141 (510)
T ss_dssp EEEEECSSCEEEEESSCGGGCCTTCEEEECCCCCEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESSCCCCCSTTBCC
T ss_pred EEEeccCCeEEEEEECCcccccCCCEEEEeCCcceeecCccceeeEEccCCcCcCCCCCCCccceeecccCCCCcccccc
Confidence 48999999999999999999999999999999999999999999999999999999988776667888889999999999
Q ss_pred CCCccccCCcccCc-cchH
Q psy271 81 VREPMQSGIEYHAP-TDCA 98 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~ 98 (191)
+.+++.+|+++.|. .++.
T Consensus 142 v~epl~TGiraID~l~Pig 160 (510)
T 2ck3_A 142 VREPMQTGIKAVDSLVPIG 160 (510)
T ss_dssp CCSBCCCSCHHHHHHSCCB
T ss_pred cCccccccceeeccccccc
Confidence 99999999999776 3443
No 5
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=99.52 E-value=3.8e-15 Score=127.28 Aligned_cols=98 Identities=51% Similarity=0.815 Sum_probs=90.5
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
+|++|+++.+.+++|+++.||..|+.|.++|++++|++|+++||||+|++|+|||+++++....+|......|+++.|..
T Consensus 62 ~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~p~~~~R~~ 141 (502)
T 2qe7_A 62 MAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPIETAEYRPIESPAPGVMDRKS 141 (502)
T ss_dssp EEEEEETTEEEEEECSCCSSCCTTCEEEEEEEESEEECSGGGTTCEECTTCCBSSCSCCCCCCCEEESSCCCCCTTSBCC
T ss_pred EEEEecCCeEEEEEecCccCCcCCCEEEEeCCcceEEcccccceEEEccCCCCCCCCCCCCCCceeeccCCCCCcccccC
Confidence 48999999999999999999999999999999999999999999999999999999988776667888889999999999
Q ss_pred CCCccccCCcccCc-cchH
Q psy271 81 VREPMQSGIEYHAP-TDCA 98 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~ 98 (191)
+.+++.+|+++.|. .++.
T Consensus 142 v~epl~TGiraID~l~Pig 160 (502)
T 2qe7_A 142 VHEPLQTGIKAIDSMIPIG 160 (502)
T ss_dssp CCSBCCCSCHHHHHSSCCB
T ss_pred CCCccccceeecccccccc
Confidence 99999999999876 3444
No 6
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=99.50 E-value=5.8e-15 Score=126.31 Aligned_cols=98 Identities=47% Similarity=0.808 Sum_probs=90.3
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
+|++|+++.+.+++|+++.||..|+.|.++|+++++++|+++||||+|++|+|||+++++....+|......|+++.|..
T Consensus 75 ~v~~l~~~~v~~~~~~~~~gi~~G~~V~~tg~~~~vpvG~~lLGRVvd~lG~PiDg~g~i~~~~~~pi~~~~P~~~~R~~ 154 (515)
T 2r9v_A 75 VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPINAKNFRPIEIKAPGVIYRKP 154 (515)
T ss_dssp EEEECCTTCEEEEEESCCTTCCTTCEEEEEEEECEEEESGGGTTCEECTTSCBCSSSCCCCCSEEEESCCCCCCGGGBCC
T ss_pred EEEEecCCeEEEEEecCcccccCCCEEEEeCCcceeecCccceeeEEcCCCCCcCCCCCCCccceeecccCCCCcccccC
Confidence 48999999999999999999999999999999999999999999999999999999988776667888889999999999
Q ss_pred CCCccccCCcccCc-cchH
Q psy271 81 VREPMQSGIEYHAP-TDCA 98 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~ 98 (191)
+.+++.+|+++.|. .++.
T Consensus 155 v~epl~TGiraID~l~Pig 173 (515)
T 2r9v_A 155 VDTPLQTGIKAIDSMIPIG 173 (515)
T ss_dssp CCSEECCSCHHHHHHSCEE
T ss_pred CCcchhcCccccccccccc
Confidence 99999999999776 3444
No 7
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=99.48 E-value=1.1e-14 Score=123.24 Aligned_cols=99 Identities=17% Similarity=0.272 Sum_probs=91.0
Q ss_pred CeeeecCCeEEEEEecCCCCCC-CCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIK-EGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRI 79 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~-~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~ 79 (191)
.|++|+++.+.+++|+++.||. .|+.|.++|++++++||++|||||+|++|+|||+++++..+.++.....+++++.|.
T Consensus 46 eVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~ 125 (464)
T 3gqb_B 46 QVIEVSEEYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRLPITGLPLNPVARR 125 (464)
T ss_dssp EEEEEESSEEEEEESSCCTTCCSSSCEEEEEESSCEEEECSTTTTEEEETTCCBCSSSCCCCCSEEEETTCCCBCGGGBC
T ss_pred EEEEEeCCeEEEEEecCccccccCCCEEEECCCCcEEEeChHhcCCEeccCCcccCCCccccCcceeeccCCCCChhhcc
Confidence 3899999999999999999999 899999999999999999999999999999999998877776788888999999999
Q ss_pred CCCCccccCCcccCc-cchHH
Q psy271 80 SVREPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 80 ~~~~C~~Cgv~~H~~-~~C~~ 99 (191)
.+.+.+.+|+++.|. .++..
T Consensus 126 ~~~e~l~TGiraID~l~pigr 146 (464)
T 3gqb_B 126 KPEQFIQTGISTIDVMNTLVR 146 (464)
T ss_dssp CCCCBCBCSCHHHHTTSCCBT
T ss_pred CccccccCcceeeeccccccc
Confidence 999999999999876 35543
No 8
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=99.47 E-value=1.7e-14 Score=122.15 Aligned_cols=99 Identities=23% Similarity=0.282 Sum_probs=90.5
Q ss_pred CeeeecCCeEEEEEecCCCCCC-CCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIK-EGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRI 79 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~-~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~ 79 (191)
.|++|++|.+.+++|+++.||. .|+.|.++|++++|++|++|||||+|++|+|||+++++..+.++......++++.|.
T Consensus 50 eVv~~~~~~~~~~~~~~~~gl~~~g~~V~~tg~~~~vpvg~~lLGRV~d~lG~PiD~~~~i~~~~~~~i~~~~p~p~~R~ 129 (465)
T 3vr4_D 50 QVLEVQEDKAMVQIFEGTSGINLKNSSVRFLGHPLQLGVSEDMIGRVFDGLGRPKDNGPEILPEKYLDINGEVINPIARD 129 (465)
T ss_dssp EEEEEESSEEEEEETTCCTTCCTTTCEEEECSSCCEEEECGGGTTEEEETTSCBCSCCCCCCCSEEEESSCCCBCTTTEE
T ss_pred EEEEEeCCeEEEEEecCccccccCCCEEEECCCcceeecchhhccceeccCCcccCCCCCCcccceeeccCcccCchhcc
Confidence 3899999999999999999999 899999999999999999999999999999999998877766678888899999999
Q ss_pred CCCCccccCCcccCc-cchHH
Q psy271 80 SVREPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 80 ~~~~C~~Cgv~~H~~-~~C~~ 99 (191)
.+.+.+.+|+++.|. .++..
T Consensus 130 ~~~e~l~TGiraID~l~pigr 150 (465)
T 3vr4_D 130 YPDEFIQTGISAIDHLNTLVR 150 (465)
T ss_dssp CCCCBCBCSCHHHHTTSCCBT
T ss_pred CcccccccCceEEeccccccc
Confidence 999999999999876 35543
No 9
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=99.47 E-value=1.2e-14 Score=123.63 Aligned_cols=99 Identities=23% Similarity=0.270 Sum_probs=76.6
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS 80 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~ 80 (191)
.|++|+++.+.+++|+++.||..|+.|.++|.+++|++|++|||||+|++|+|||+++++..+..+......++++.|..
T Consensus 52 eV~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~l~vpvg~~lLGRV~d~lG~PiDg~~~i~~~~~~~i~~~~p~p~~R~~ 131 (469)
T 2c61_A 52 QVLDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVPDQLLDINGAAMNPYARLP 131 (469)
T ss_dssp EEEEECSSEEEEEEC-------------CEEEBCEEEECGGGTTCEEETTSCBSSSCCCCCCSEEEESSSCSSCCBCSCC
T ss_pred EEEEEeCCEEEEEEeCCCcCCCCCCEEEEcCCCcEEEccccceeeEEcccCCCCCCCCCCCccccccccCccCCcccccc
Confidence 38999999999999999999999999999999999999999999999999999999988766656677778889999999
Q ss_pred CCCccccCCcccCc-cchHH
Q psy271 81 VREPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 81 ~~~C~~Cgv~~H~~-~~C~~ 99 (191)
+.+.+.+|+++.|. .++..
T Consensus 132 ~~e~l~TGir~ID~l~pigr 151 (469)
T 2c61_A 132 PKDFIQTGISTIDGTNTLVR 151 (469)
T ss_dssp CCSBCBCSCHHHHTTSCCBT
T ss_pred cccccceeeEeeeeeecccc
Confidence 99999999999876 34543
No 10
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=99.42 E-value=7.6e-14 Score=119.19 Aligned_cols=96 Identities=26% Similarity=0.330 Sum_probs=87.8
Q ss_pred eecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCCCCC
Q psy271 4 NLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVRE 83 (191)
Q Consensus 4 ~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~~~~ 83 (191)
+|+++.+.+++|++++||.+|+.|.++|.++++++|+++|||++|++|+|||+++++..+.+|......|+++.|..+.+
T Consensus 68 ~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiD~~~~i~~~~~~pi~~~~p~~~~r~~~~e 147 (498)
T 1fx0_B 68 LLGNNRVRAVAMSATDGLTRGMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLS 147 (498)
T ss_dssp CCSSSCEEEEESSCCTTCCTTCEEEECSSSCEEEESSTTTTCEECTTSCBCSSSSCCCCSEEEESCCCCCCGGGCCCCCC
T ss_pred EecCCeEEEEEecCccCCCCCCEEEecCCcceEecCccceeeEEcccccCCCCcCCcCCCceeccccCCCchhhhccccc
Confidence 48899999999999999999999999999999999999999999999999999988766667888999999999999999
Q ss_pred ccccCCcccCc-cchHH
Q psy271 84 PMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 84 C~~Cgv~~H~~-~~C~~ 99 (191)
.+.+|+++.|. .++..
T Consensus 148 ~l~TGirvID~l~pigk 164 (498)
T 1fx0_B 148 IFETGIKVVNLLAPYRR 164 (498)
T ss_dssp CCCCSCTTHHHHSCCCT
T ss_pred ccccceeEeeeeccccc
Confidence 99999999876 34443
No 11
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=99.40 E-value=1.6e-13 Score=116.83 Aligned_cols=97 Identities=26% Similarity=0.438 Sum_probs=87.6
Q ss_pred eeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCCCC
Q psy271 3 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVR 82 (191)
Q Consensus 3 ~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~~~ 82 (191)
.+++++.+.+++|+++.||..|+.|.++|+++++++|+++|||++|++|+|||+++++....+|......|++..|..+.
T Consensus 55 ~~~~~~~v~~~~~~~t~Gl~~G~~V~~tg~~~~vpvG~~lLGRV~d~lG~PiDg~~~~~~~~~~pi~~~~P~~~~r~~~~ 134 (482)
T 2ck3_D 55 QHLGESTVRTIAMDGTEGLVRGQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQ 134 (482)
T ss_dssp EEEETTEEEEEESSCCTTCBTTCEEEECSSSCEEECSGGGBTCEECTTSCBCSSSCSCCCCCEEESCCCCCCGGGCCCCC
T ss_pred EEecCCeEEEEeccCccCCCCCCEEEEcCCcceeeccccccCCEEcccCcCcCCcCCCCccccccccccCCchHHhcccC
Confidence 34899999999999999999999999999999999999999999999999999988776666788888999999999999
Q ss_pred CccccCCcccCc-cchHH
Q psy271 83 EPMQSGIEYHAP-TDCAV 99 (191)
Q Consensus 83 ~C~~Cgv~~H~~-~~C~~ 99 (191)
+.+.+|+++.|. .++..
T Consensus 135 e~l~TGir~ID~l~pigk 152 (482)
T 2ck3_D 135 EILVTGIKVVDLLAPYAK 152 (482)
T ss_dssp CEECCSCHHHHHHSCEET
T ss_pred cCCccceEEEeccccccc
Confidence 999999999876 34443
No 12
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=99.35 E-value=2.9e-13 Score=115.37 Aligned_cols=92 Identities=30% Similarity=0.399 Sum_probs=84.4
Q ss_pred eeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCCCccc-ccCCCCCCCCCeeecCCC
Q psy271 3 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTT-TRFRVGIKAPGIIPRISV 81 (191)
Q Consensus 3 ~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~-~~~Cp~~~C~~~~~r~~~ 81 (191)
.+++++.+.+++|+++.||..|+.|.++|+++++++|+++|||++|++|+|||+++++..+ .+|......|+++.|..+
T Consensus 52 ~~~~~~~v~~~~~~~t~gl~~G~~V~~tg~~~~vpvg~~llGrv~d~lG~piD~~g~i~~~~~~~pi~~~~p~~~~r~~~ 131 (473)
T 1sky_E 52 LHLGDDTVRTIAMASTDGLIRGMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADARRDPIHRPAPKFEELATE 131 (473)
T ss_dssp EEEETTEEEEEESSCCTTCCTTCEEEEEEEECEEECSGGGTTCEECTTSCBCSSSCCCCTTSCEEESCCCCCCGGGBCCS
T ss_pred EEecCCcEEEEEecCccCCCCCCEEEEcCCcceeeccccceeeEEeecCCccCcccccCCCceeecccccCcchhhhccc
Confidence 3489999999999999999999999999999999999999999999999999998887665 568888899999999999
Q ss_pred CCccccCCcccCc
Q psy271 82 REPMQSGIEYHAP 94 (191)
Q Consensus 82 ~~C~~Cgv~~H~~ 94 (191)
.+.+.+|+++.+.
T Consensus 132 ~e~l~TGir~ID~ 144 (473)
T 1sky_E 132 VEILETGIKVVDL 144 (473)
T ss_dssp CCEECCSCHHHHH
T ss_pred CccccccchHHHH
Confidence 9999999997554
No 13
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=99.11 E-value=1.9e-11 Score=105.85 Aligned_cols=56 Identities=20% Similarity=0.422 Sum_probs=54.8
Q ss_pred eeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCC
Q psy271 2 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGK 57 (191)
Q Consensus 2 v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~ 57 (191)
|+++++|.+.+++|+++.||++|+.|.++|++++|++|++||||++|++|+|||++
T Consensus 46 Vi~~~~d~a~i~v~e~t~Gl~~G~~V~~tG~~lsV~vG~~lLGrV~DglGrPlD~~ 101 (600)
T 3vr4_A 46 IIEMRQDVASIQVYEETSGIGPGEPVRSTGEALSVELGPGIISQMFDGIQRPLDTF 101 (600)
T ss_dssp EEEEETTEEEEEESSCCTTCCTTCEEEECSSSSEEEESTTCTTCEECTTCCBHHHH
T ss_pred EEEEcCCcEEEEEccCCCCCCCCCEEEECCCCCEEEeCHHHHhhhhCcCCCccccc
Confidence 89999999999999999999999999999999999999999999999999999976
No 14
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A 3j0j_A* 1um2_C
Probab=99.07 E-value=2.2e-11 Score=105.03 Aligned_cols=56 Identities=23% Similarity=0.375 Sum_probs=54.8
Q ss_pred eeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCC
Q psy271 2 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGK 57 (191)
Q Consensus 2 v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~ 57 (191)
|+++++|.+.+++|+++.||++|+.|.++|++++|++|++||||++|++|+|||+.
T Consensus 39 Vi~~~~d~~~i~v~e~t~Gl~~G~~V~~tg~~l~V~vG~~lLGrV~DglG~PlD~~ 94 (578)
T 3gqb_A 39 IIRLDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLERI 94 (578)
T ss_dssp EEEEETTEEEEEESSCCTTCCTTCEEEEEEEESEEEESTTCTTCEECTTSCBHHHH
T ss_pred EEEEcCCcEEEEEcCCCCCCCCCCEEEECCCCCEEEeCHHHhhhhhCcCCCccccc
Confidence 89999999999999999999999999999999999999999999999999999976
No 15
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=99.05 E-value=1.7e-11 Score=105.75 Aligned_cols=59 Identities=24% Similarity=0.361 Sum_probs=35.4
Q ss_pred CeeeecCCeEEEEEecCCCCCCCCCeEEecCCccccccchhHHHHHHhhcCCcccCCCC
Q psy271 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGP 59 (191)
Q Consensus 1 ~v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~v~~~llgrv~d~~g~~ld~~~~ 59 (191)
.|++|++|.+.+++|+++.||++|+.|.++|++++|++|+.||||++|++|+|||++++
T Consensus 39 eVi~l~~d~~~i~v~e~t~Gi~~G~~V~~tg~~lsV~vG~gLLGrV~DglgrPLd~~~~ 97 (588)
T 3mfy_A 39 EIIRLEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLEVIRE 97 (588)
T ss_dssp ----------------------CCCCCSSSSSCCEEEESTTCTTCEEETTCCSSSSCCC
T ss_pred EEEEecCCeEEEEEccCCCCCCCCCEEEEcCCCCEEEeCHHHHhhccCCCCCcccCccc
Confidence 38999999999999999999999999999999999999999999999999999998753
No 16
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.01 E-value=1.9e-10 Score=97.72 Aligned_cols=91 Identities=19% Similarity=0.236 Sum_probs=74.8
Q ss_pred eeeecCCeEEEEEecCCCCCCCCCeEEecCC-------ccccccchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCC
Q psy271 2 ALNLEPDNVGVVVFGNDRLIKEGDIVKRTGA-------IVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPG 74 (191)
Q Consensus 2 v~~l~~~~~~~~~~~~~~gi~~G~~v~~~g~-------~~~v~v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~ 74 (191)
|++|+++.+.+++|+++.||.+|+.|.++|. ++++++++.++||++|.+|+|+|+++++.....|......++
T Consensus 51 v~~~~~~~~~~~~~~~~~gl~~g~~v~~~~~~~~~~~~~~~v~~g~~~lgrv~~~lg~p~d~~~~~~~~~~~~i~~~~~~ 130 (438)
T 2dpy_A 51 VVGFNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGLPAPDTLETGALITPPFN 130 (438)
T ss_dssp EEECCTTCEEEEESSCCTTCCTTEEEEEC----------CEEECSGGGTTEEECTTCCBSSSSCCCCCSCEEESCCCCCC
T ss_pred EEEEcCCEEEEEEccCCCCCCCCCEEEECCCccccccccEEEEcchhhhhhhhhccCCccCCCCCccccccccccCCCCC
Confidence 7899999999999999999999999999999 999999999999999999999998877655544555555567
Q ss_pred eeecCCCCCccccCCccc
Q psy271 75 IIPRISVREPMQSGIEYH 92 (191)
Q Consensus 75 ~~~r~~~~~C~~Cgv~~H 92 (191)
++.+..+...+.+++++.
T Consensus 131 ~l~~~~v~~~~~tg~~vl 148 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAI 148 (438)
T ss_dssp TTTSCCCCSBCCCSCHHH
T ss_pred ceEEeccceecCCCceEE
Confidence 788888877777665543
No 17
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.50 E-value=4.3e-08 Score=64.81 Aligned_cols=68 Identities=7% Similarity=-0.020 Sum_probs=45.9
Q ss_pred chhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCCC-----------CCccccCCcc---cCccchHHHHHHH
Q psy271 39 GEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISV-----------REPMQSGIEY---HAPTDCAVIKKWL 104 (191)
Q Consensus 39 ~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~~-----------~~C~~Cgv~~---H~~~~C~~~~~~~ 104 (191)
+++++.||...+.+... ...++++||| +|.+++..... .+|+.|+.+| |.+.+|+++++|+
T Consensus 3 s~~~~e~y~~~l~e~~v---~~~~~~~wCP--~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~~H~~~sC~~~~~w~ 77 (86)
T 2ct7_A 3 SGSSGALFHKKLTEGVL---MRDPKFLWCA--QCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRSCEDFQNWK 77 (86)
T ss_dssp CCCCCCSSSSCCCCSCC---CSCCCEECCS--SSCCCEECCCSCSCEECTTTCCEECSSSCSBCCTTTTTSCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH---hcCCCEeECc--CCCchheecCCCCceEeCCCCCccccccCCchhhcCCCCChHHHHHHH
Confidence 34455555544332221 1245778999 89987644321 2399999999 9999999999999
Q ss_pred hhccChH
Q psy271 105 TKCADDS 111 (191)
Q Consensus 105 ~~~~~~~ 111 (191)
.++..++
T Consensus 78 ~~n~~~~ 84 (86)
T 2ct7_A 78 RMNSGPS 84 (86)
T ss_dssp HHHTCSS
T ss_pred HhCcccc
Confidence 8766553
No 18
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.4
Probab=98.11 E-value=2.4e-06 Score=56.29 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=34.6
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
.+-||+|...+....+-..++|..|++.||+.|+.+|+.
T Consensus 25 ~~wCP~C~~~~~~~~~~~~v~C~~C~~~FC~~C~~~w~~ 63 (86)
T 2ct7_A 25 FLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEE 63 (86)
T ss_dssp EECCSSSCCCEECCCSCSCEECTTTCCEECSSSCSBCCT
T ss_pred EeECcCCCchheecCCCCceEeCCCCCccccccCCchhh
Confidence 446999999998888888899988999999999999943
No 19
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.90 E-value=4.8e-06 Score=54.07 Aligned_cols=40 Identities=20% Similarity=0.495 Sum_probs=35.8
Q ss_pred cCCCCCC--CCcceEecCCcCceEeC-----CCCcceeccccccccc
Q psy271 120 HTKDCPK--CHICIEKNGGCNHMQCY-----HCKHEFCWMCLGNTID 159 (191)
Q Consensus 120 ~~k~CP~--C~~~i~k~~GC~~m~C~-----~C~~~fC~~C~~~~~~ 159 (191)
..+-||. |+..|...++...++|. .|++.||+.|+.+|-.
T Consensus 24 ~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~ 70 (80)
T 2jmo_A 24 GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE 70 (80)
T ss_dssp SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS
T ss_pred CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC
Confidence 3677997 99999998899999997 7999999999999865
No 20
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=97.68 E-value=8.6e-06 Score=67.08 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=52.3
Q ss_pred ccccccchhHHHHHHhhcCCcccCCC-CCcccccCCCCCCCCCeeecCCCCCccccCCcccCc
Q psy271 33 IVDVPVGEDLLGRVVDALGNTIDGKG-PLKTTTRFRVGIKAPGIIPRISVREPMQSGIEYHAP 94 (191)
Q Consensus 33 ~~~v~v~~~llgrv~d~~g~~ld~~~-~~~~~~~~Cp~~~C~~~~~r~~~~~C~~Cgv~~H~~ 94 (191)
+++|+||+++||||+|++|+|+|+++ ++.....|......++++.+..+.+.+.+|+++.+.
T Consensus 2 ~~~~~vg~~~lGrv~~~~g~p~d~~~~~~~~~~~~~i~~~~~~~i~~~~l~~~~~tg~~ald~ 64 (347)
T 2obl_A 2 SHKIRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGVRAIDG 64 (347)
T ss_dssp CCEEEECGGGTTCEECTTSCBCSCCSSCCCCCEEEESCCCCSCSTTCCCCCSEECCSCHHHHH
T ss_pred CceeecCccccCCEECCCCCcCCCCCCCCCCCCcccccCCCCCCeeecccceecCCCCEEEEe
Confidence 57899999999999999999999987 776666678788888899999998888888766443
No 21
>2jmo_A Parkin; IBR, E3 ligase, zinc binding domain, RBR; NMR {Homo sapiens}
Probab=97.24 E-value=5.9e-05 Score=48.85 Aligned_cols=57 Identities=11% Similarity=0.008 Sum_probs=39.6
Q ss_pred cchhHHHHHHhhcCCcccCCCCCcccccCCCCCCCCCeeecCC----------------CCCccccCCcccCccchHH
Q psy271 38 VGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRIS----------------VREPMQSGIEYHAPTDCAV 99 (191)
Q Consensus 38 v~~~llgrv~d~~g~~ld~~~~~~~~~~~Cp~~~C~~~~~r~~----------------~~~C~~Cgv~~H~~~~C~~ 99 (191)
|+++++.||...+-+..... . ..+|||.++|..++.... ..+|+.|+..||. .+|++
T Consensus 3 l~~~~~~rY~~~~~e~~v~~---~-~~~~CP~p~C~~~v~~~~~~~~v~C~~~~~~~C~~~FC~~C~~~wH~-~~C~~ 75 (80)
T 2jmo_A 3 MGEEQYNRYQQYGAEECVLQ---M-GGVLCPRPGCGAGLLPEPDQRKVTCEGGNGLGCGFAFCRECKEAYHE-GECSA 75 (80)
T ss_dssp CCCCCCCSCCCSSSCCSSCC---C-SSCCCCSSSCCCCCCCCSCTTSBCTTSSSTTCCSCCEETTTTEECCS-SCSSS
T ss_pred CCHHHHHHHHHHHHHHHhhh---C-CcEECCCCCCCcccEECCCCCcCCCCCCCCCCCCCeeccccCccccC-Ccccc
Confidence 56777788776644333221 2 378999999998875421 1238899999999 99975
No 22
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=93.97 E-value=0.014 Score=38.82 Aligned_cols=36 Identities=19% Similarity=0.540 Sum_probs=29.2
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
.-.||-|...+. +-++|..|||.||+.|...|....
T Consensus 22 ~~~C~IC~~~~~-----~p~~~~~CgH~FC~~Ci~~~~~~~ 57 (100)
T 3lrq_A 22 VFRCFICMEKLR-----DARLCPHCSKLCCFSCIRRWLTEQ 57 (100)
T ss_dssp HTBCTTTCSBCS-----SEEECTTTCCEEEHHHHHHHHHHT
T ss_pred CCCCccCCcccc-----CccccCCCCChhhHHHHHHHHHHC
Confidence 356999998885 357778899999999999997543
No 23
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.17 E-value=0.08 Score=32.57 Aligned_cols=33 Identities=24% Similarity=0.671 Sum_probs=26.1
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+. +.++- .|||.||+.|...|..
T Consensus 20 ~~~C~IC~~~~~-----~~~~~-~CgH~fC~~Ci~~~~~ 52 (73)
T 2ysl_A 20 EVICPICLDILQ-----KPVTI-DCGHNFCLKCITQIGE 52 (73)
T ss_dssp CCBCTTTCSBCS-----SEEEC-TTCCEEEHHHHHHHCS
T ss_pred CCEeccCCcccC-----CeEEc-CCCChhhHHHHHHHHH
Confidence 357999988765 24444 6999999999999986
No 24
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=92.73 E-value=0.057 Score=31.99 Aligned_cols=30 Identities=17% Similarity=0.401 Sum_probs=22.2
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
..+-||+|+..+.-...-+...|.+|++.+
T Consensus 17 ~~~fCPkCG~~~~ma~~~dr~~C~kCgyt~ 46 (55)
T 2k4x_A 17 KHRFCPRCGPGVFLAEHADRYSCGRCGYTE 46 (55)
T ss_dssp SSCCCTTTTTTCCCEECSSEEECTTTCCCE
T ss_pred ccccCcCCCCceeEeccCCEEECCCCCCEE
Confidence 357899999855433445689999999875
No 25
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=92.62 E-value=0.071 Score=30.71 Aligned_cols=30 Identities=20% Similarity=0.460 Sum_probs=22.2
Q ss_pred cCCCCCCCCc-ceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHI-CIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~-~i~k~~GC~~m~C~~C~~~f 149 (191)
....||.|+. .+.....=..+.|..||..|
T Consensus 4 ~~~~CP~C~~~~l~~d~~~gelvC~~CG~v~ 34 (50)
T 1pft_A 4 KQKVCPACESAELIYDPERGEIVCAKCGYVI 34 (50)
T ss_dssp SCCSCTTTSCCCEEEETTTTEEEESSSCCBC
T ss_pred ccEeCcCCCCcceEEcCCCCeEECcccCCcc
Confidence 3568999998 77776665678998666544
No 26
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=92.42 E-value=0.12 Score=33.03 Aligned_cols=36 Identities=31% Similarity=0.746 Sum_probs=28.1
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcc-----eeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHE-----FCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~-----fC~~C~~~~~~ 159 (191)
..||.|+..++.+++ +..|..|+.. ||-.|+++...
T Consensus 3 ~~CP~C~~~l~~~~~--~~~C~~C~~~~~~~afCPeCgq~Le~ 43 (81)
T 2jrp_A 3 ITCPVCHHALERNGD--TAHCETCAKDFSLQALCPDCRQPLQV 43 (81)
T ss_dssp CCCSSSCSCCEECSS--EEECTTTCCEEEEEEECSSSCSCCCE
T ss_pred CCCCCCCCccccCCC--ceECccccccCCCcccCcchhhHHHH
Confidence 579999999999887 6668888764 68888887643
No 27
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.33 E-value=0.049 Score=34.82 Aligned_cols=38 Identities=24% Similarity=0.565 Sum_probs=27.2
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+.....- -+.- .|||.||+.|...|...
T Consensus 15 ~~~C~IC~~~~~~~~~~-~~~~-~CgH~fC~~Ci~~~~~~ 52 (88)
T 2ct2_A 15 VLECPICMESFTEEQLR-PKLL-HCGHTICRQCLEKLLAS 52 (88)
T ss_dssp CCBCTTTCCBCCTTSSC-EEEC-SSSCEEEHHHHHHHHHH
T ss_pred CCCCccCCccccccCCC-eEEC-CCCChhhHHHHHHHHHc
Confidence 35699998877544221 2333 69999999999999754
No 28
>2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis}
Probab=92.10 E-value=0.1 Score=32.28 Aligned_cols=29 Identities=14% Similarity=0.170 Sum_probs=23.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-.||.|+...+.......+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2jr6_A 8 ILVCPVTKGRLEYHQDKQELWSRQAKLAY 36 (68)
T ss_dssp CCBCSSSCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45799999999998888889998676554
No 29
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=92.01 E-value=0.099 Score=30.29 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=19.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.+-||+|+..+.-...=+.+.|.+||+.+
T Consensus 19 ~k~CP~CG~~~fm~~~~~R~~C~kCG~t~ 47 (50)
T 3j20_Y 19 NKFCPRCGPGVFMADHGDRWACGKCGYTE 47 (50)
T ss_dssp SEECSSSCSSCEEEECSSEEECSSSCCEE
T ss_pred cccCCCCCCceEEecCCCeEECCCCCCEE
Confidence 56799999854332223788999888753
No 30
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=91.91 E-value=0.16 Score=29.20 Aligned_cols=38 Identities=18% Similarity=0.359 Sum_probs=27.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...++... ..+.-..|+|.||..|...|...
T Consensus 5 ~~~C~IC~~~~~~~~--~~~~~~~C~H~f~~~Ci~~w~~~ 42 (55)
T 1iym_A 5 GVECAVCLAELEDGE--EARFLPRCGHGFHAECVDMWLGS 42 (55)
T ss_dssp SCCCTTTCCCCCTTS--CCEECSSSCCEECTTHHHHTTTT
T ss_pred CCcCccCCccccCCC--ceEECCCCCCcccHHHHHHHHHc
Confidence 457999988775543 23444359999999999999754
No 31
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=91.87 E-value=0.15 Score=32.27 Aligned_cols=35 Identities=26% Similarity=0.698 Sum_probs=24.7
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTI 158 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~ 158 (191)
..||-|..++...+ -..+.| .|||.||..|+..+.
T Consensus 12 ~~CpICle~~~~~d-~~~~p~-~CGH~fC~~Cl~~~~ 46 (78)
T 1e4u_A 12 VECPLCMEPLEIDD-INFFPC-TCGYQICRFCWHRIR 46 (78)
T ss_dssp CBCTTTCCBCCTTT-TTCCSS-TTSCCCCHHHHHHHT
T ss_pred CcCCccCccCcccc-cccccc-CCCCCcCHHHHHHHH
Confidence 56999998774322 223346 599999999998775
No 32
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.56 E-value=0.1 Score=31.46 Aligned_cols=32 Identities=31% Similarity=0.808 Sum_probs=24.7
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
..||-|...+.. .++ ..|||.||+.|...|..
T Consensus 16 ~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~ 47 (66)
T 2ecy_A 16 YKCEKCHLVLCS-----PKQ-TECGHRFCESCMAALLS 47 (66)
T ss_dssp EECTTTCCEESS-----CCC-CSSSCCCCHHHHHHHHT
T ss_pred CCCCCCChHhcC-----eeE-CCCCCHHHHHHHHHHHH
Confidence 469999877642 233 36999999999999984
No 33
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.37 E-value=0.05 Score=33.62 Aligned_cols=35 Identities=20% Similarity=0.378 Sum_probs=26.6
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+.. -++-..|+|.||+.|...|...
T Consensus 15 ~~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~ 49 (72)
T 2djb_A 15 YILCSICKGYLID-----ATTITECLHTFCKSCIVRHFYY 49 (72)
T ss_dssp GGSCTTTSSCCSS-----CEECSSSCCEECHHHHHHHHHH
T ss_pred CCCCCCCChHHHC-----cCEECCCCCHHHHHHHHHHHHc
Confidence 3579999877743 4555469999999999999753
No 34
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=91.23 E-value=0.13 Score=33.19 Aligned_cols=32 Identities=25% Similarity=0.492 Sum_probs=26.9
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceec
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCW 151 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~ 151 (191)
....||.|+....+..+=..+.|..|++.|--
T Consensus 26 ~~y~Cp~CG~~~v~r~atGiW~C~~Cg~~~ag 57 (83)
T 1vq8_Z 26 EDHACPNCGEDRVDRQGTGIWQCSYCDYKFTG 57 (83)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEEEC
T ss_pred ccCcCCCCCCcceeccCCCeEECCCCCCEecC
Confidence 45689999999999888789999988887753
No 35
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=90.80 E-value=0.1 Score=31.86 Aligned_cols=40 Identities=25% Similarity=0.556 Sum_probs=28.5
Q ss_pred CCCCCCCCcceEec-CCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKN-GGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~-~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+... .+=..+.-..|||.||+.|...|...
T Consensus 10 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 50 (71)
T 3ng2_A 10 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 50 (71)
T ss_dssp CCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc
Confidence 45799998887653 22233444479999999999999753
No 36
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.78 E-value=0.067 Score=32.00 Aligned_cols=33 Identities=24% Similarity=0.671 Sum_probs=26.1
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+. +.++- .|||.||+.|...|..
T Consensus 20 ~~~C~IC~~~~~-----~p~~~-~CgH~fC~~Ci~~~~~ 52 (63)
T 2ysj_A 20 EVICPICLDILQ-----KPVTI-DCGHNFCLKCITQIGE 52 (63)
T ss_dssp CCBCTTTCSBCS-----SCEEC-TTSSEECHHHHHHHHH
T ss_pred CCCCCcCCchhC-----CeEEe-CCCCcchHHHHHHHHH
Confidence 357999988775 24554 6999999999999986
No 37
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=90.33 E-value=0.096 Score=32.53 Aligned_cols=34 Identities=15% Similarity=0.395 Sum_probs=26.0
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+. +.++-..|||.||+.|...|...
T Consensus 16 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~ 49 (74)
T 2yur_A 16 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALLE 49 (74)
T ss_dssp GSCSSSCCCCT-----TCEECSSSCCEECTTHHHHHHHH
T ss_pred CCCcCCChHHh-----CCeEcCCCCCHHHHHHHHHHHHh
Confidence 47999987774 34554339999999999999863
No 38
>1wfh_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=90.25 E-value=0.37 Score=29.27 Aligned_cols=41 Identities=15% Similarity=0.293 Sum_probs=30.5
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCCCCCCC
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGPLKT 166 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~~~~~~ 166 (191)
...+|..|+..+... -+.| +|+..||-.=.-+ +.|..+|..
T Consensus 14 ~~~rC~~C~kkvgl~----~f~C-rCg~~FC~~HRy~-e~H~C~fDy 54 (64)
T 1wfh_A 14 RPNRCTVCRKRVGLT----GFMC-RCGTTFCGSHRYP-EVHGCTFDF 54 (64)
T ss_dssp SCCCCTTTCCCCCTT----CEEC-SSSCEECTTTCST-TTTTCCCCC
T ss_pred cCCcChhhCCccCcc----CEEe-ecCCEeccccCCc-ccCCCCchh
Confidence 357899999988766 4899 7999999987554 455555443
No 39
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=90.23 E-value=0.13 Score=29.64 Aligned_cols=38 Identities=18% Similarity=0.419 Sum_probs=27.5
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+...+ ..+.-..|+|.||+.|...|...
T Consensus 5 ~~~C~IC~~~~~~~~--~~~~~~~CgH~fc~~Ci~~~~~~ 42 (55)
T 2ecm_A 5 SSGCPICLEDIHTSR--VVAHVLPCGHLLHRTCYEEMLKE 42 (55)
T ss_dssp CCSCTTTCCCCCTTT--SCEEECTTSCEEETTHHHHHHHH
T ss_pred CCcCcccChhhcCCC--cCeEecCCCCcccHHHHHHHHHc
Confidence 356999987774322 23555579999999999999754
No 40
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=89.63 E-value=0.13 Score=33.73 Aligned_cols=35 Identities=23% Similarity=0.581 Sum_probs=27.0
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
-.||-|...+.. .++...|||.||+.|...|....
T Consensus 23 ~~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~~ 57 (99)
T 2y43_A 23 LRCGICFEYFNI-----AMIIPQCSHNYCSLCIRKFLSYK 57 (99)
T ss_dssp TBCTTTCSBCSS-----EEECTTTCCEEEHHHHHHHHTTC
T ss_pred CCcccCChhhCC-----cCEECCCCCHhhHHHHHHHHHCC
Confidence 579999887743 44554699999999999998643
No 41
>1wff_A Riken cDNA 2810002D23 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=89.53 E-value=0.56 Score=30.19 Aligned_cols=55 Identities=18% Similarity=0.228 Sum_probs=35.4
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCCCC--CCCCCCcccCccCCCc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGP--LKTTTRFRVGIKAPGI 179 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~~~--~~~~~~~~~~~~a~~i 179 (191)
...+|..|+..+... +-+.| +|+..||-.=.-+ +.|... |....+..+...-|-|
T Consensus 24 ~~~rC~~C~kkvgl~---~~f~C-rCg~~FC~~HRy~-e~H~C~fDyK~~gr~~iak~NPvV 80 (85)
T 1wff_A 24 IMKHCFLCGKKTGLA---TSFEC-RCGNNFCASHRYA-EAHGCNYDYKSAGRRYLEEANPVS 80 (85)
T ss_dssp CCCBCSSSCCBCSSS---SCEEC-TTCCEECTTTCST-GGGTCCSCCSSSCCCCCCCCCCCC
T ss_pred cCccchhhCCeeccc---CCeEc-CCCCEecccCCCc-cCCCCcchhhHHHHHHHHHHCCee
Confidence 356899999887665 34999 6999999976544 444443 4444455554444443
No 42
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=89.50 E-value=0.14 Score=34.23 Aligned_cols=36 Identities=19% Similarity=0.454 Sum_probs=27.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
.-.||-|...+. +.++...|||.||+.|...|....
T Consensus 15 ~~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~~~ 50 (108)
T 2ckl_A 15 HLMCVLCGGYFI-----DATTIIECLHSFCKTCIVRYLETS 50 (108)
T ss_dssp GTBCTTTSSBCS-----SEEEETTTCCEEEHHHHHHHHTSC
T ss_pred cCCCccCChHHh-----CcCEeCCCCChhhHHHHHHHHHhC
Confidence 457999988774 246654699999999999997643
No 43
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=89.05 E-value=0.18 Score=30.40 Aligned_cols=34 Identities=26% Similarity=0.674 Sum_probs=25.4
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+.. ...-..|||.||+.|...|..
T Consensus 5 ~~~C~IC~~~~~~-----~~~~~~C~H~fc~~Ci~~~~~ 38 (68)
T 1chc_A 5 AERCPICLEDPSN-----YSMALPCLHAFCYVCITRWIR 38 (68)
T ss_dssp CCCCSSCCSCCCS-----CEEETTTTEEESTTHHHHHHH
T ss_pred CCCCeeCCccccC-----CcEecCCCCeeHHHHHHHHHh
Confidence 4679999887642 224446999999999999875
No 44
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=88.75 E-value=0.32 Score=32.05 Aligned_cols=37 Identities=24% Similarity=0.683 Sum_probs=30.7
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcc-----eeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHE-----FCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~-----fC~~C~~~~~~ 159 (191)
...||.|+..++.++| +..|..|... ||-.|.+++..
T Consensus 32 ~~~CP~Cq~eL~~~g~--~~hC~~C~~~f~~~a~CPdC~q~Lev 73 (101)
T 2jne_A 32 ELHCPQCQHVLDQDNG--HARCRSCGEFIEMKALCPDCHQPLQV 73 (101)
T ss_dssp CCBCSSSCSBEEEETT--EEEETTTCCEEEEEEECTTTCSBCEE
T ss_pred cccCccCCCcceecCC--EEECccccchhhccccCcchhhHHHH
Confidence 4789999999999988 7789999876 48888887654
No 45
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=88.62 E-value=0.11 Score=37.66 Aligned_cols=33 Identities=27% Similarity=0.677 Sum_probs=26.5
Q ss_pred CCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.||-|...+.. .++...|||.||+.|...|...
T Consensus 56 ~C~IC~~~~~~-----p~~~~~CgH~fC~~Ci~~~~~~ 88 (165)
T 2ckl_B 56 MCPICLDMLKN-----TMTTKECLHRFCADCIITALRS 88 (165)
T ss_dssp BCTTTSSBCSS-----EEEETTTCCEEEHHHHHHHHHT
T ss_pred CCcccChHhhC-----cCEeCCCCChhHHHHHHHHHHh
Confidence 69999887753 4666569999999999999764
No 46
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=88.00 E-value=0.96 Score=27.91 Aligned_cols=38 Identities=21% Similarity=0.383 Sum_probs=26.0
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
...||-|...+.... ..+.- .|+|.||+.|...|....
T Consensus 15 ~~~C~IC~~~~~~~~--~~~~~-~C~H~fc~~Ci~~~~~~~ 52 (78)
T 2ect_A 15 GLECPVCKEDYALGE--SVRQL-PCNHLFHDSCIVPWLEQH 52 (78)
T ss_dssp SCCCTTTTSCCCTTS--CEEEC-TTSCEEETTTTHHHHTTT
T ss_pred CCCCeeCCccccCCC--CEEEe-CCCCeecHHHHHHHHHcC
Confidence 457999987765332 11222 589999999999997543
No 47
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=87.97 E-value=0.74 Score=27.94 Aligned_cols=40 Identities=15% Similarity=0.334 Sum_probs=29.4
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCCCCCCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGPLKT 166 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~~~~~~ 166 (191)
..+|..|+..+... -+.| +|+..||-.=.-+ +.|...|..
T Consensus 15 ~~rC~~C~kkvgl~----~f~C-rCg~~FC~~HR~~-e~H~C~fDy 54 (64)
T 1wg2_A 15 NNRCFSCNKKVGVM----GFKC-KCGSTFCGSHRYP-EKHECSFDF 54 (64)
T ss_dssp SCSCTTTCCCCTTS----CEEC-TTSCEECSSSCSS-TTTTCCCCC
T ss_pred CCcChhhCCccccc----CeEe-ecCCEecccCCCc-cccCCCcch
Confidence 56899999887665 4899 7999999887554 455555443
No 48
>2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50}
Probab=87.72 E-value=0.46 Score=29.48 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=22.1
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-.||.|+...+....=..+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (70)
T 2js4_A 8 ILVCPVCKGRLEFQRAQAELVCNADRLAF 36 (70)
T ss_dssp CCBCTTTCCBEEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCEEeCCCCEEEcCCCCcee
Confidence 45799999999987665678887665554
No 49
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=87.61 E-value=0.32 Score=30.18 Aligned_cols=33 Identities=21% Similarity=0.633 Sum_probs=25.0
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+.. .++- .|||.||+.|...|...
T Consensus 13 ~~C~IC~~~~~~-----p~~l-~CgH~fC~~Ci~~~~~~ 45 (79)
T 2egp_A 13 VTCPICLELLTE-----PLSL-DCGHSLCRACITVSNKE 45 (79)
T ss_dssp CEETTTTEECSS-----CCCC-SSSCCCCHHHHSCCCCC
T ss_pred CCCcCCCcccCC-----eeEC-CCCCHHHHHHHHHHHHh
Confidence 469999877632 3444 69999999999998764
No 50
>2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1
Probab=87.60 E-value=0.42 Score=29.49 Aligned_cols=29 Identities=17% Similarity=0.327 Sum_probs=22.0
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-.||.|+...+....=..+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (68)
T 2hf1_A 8 ILVCPLCKGPLVFDKSKDELICKGDRLAF 36 (68)
T ss_dssp ECBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred heECCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 45799999999887665678887666554
No 51
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.44 E-value=0.24 Score=30.29 Aligned_cols=35 Identities=23% Similarity=0.568 Sum_probs=25.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
...||-|...+.. -++- .|+|.||+.|...|....
T Consensus 15 ~~~C~IC~~~~~~-----~~~~-~CgH~fC~~Ci~~~~~~~ 49 (71)
T 2d8t_A 15 VPECAICLQTCVH-----PVSL-PCKHVFCYLCVKGASWLG 49 (71)
T ss_dssp CCBCSSSSSBCSS-----EEEE-TTTEEEEHHHHHHCTTCS
T ss_pred CCCCccCCcccCC-----CEEc-cCCCHHHHHHHHHHHHCC
Confidence 3569999877632 2444 599999999999987543
No 52
>1wfl_A Zinc finger protein 216; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=87.44 E-value=0.41 Score=29.95 Aligned_cols=40 Identities=20% Similarity=0.466 Sum_probs=29.5
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCCCCCCC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGPLKT 166 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~~~~~~ 166 (191)
..+|..|+..++..+ +.| +|+..||-.=.-+ +.|...|..
T Consensus 25 ~nRC~~CrKkvgL~g----f~C-rCg~~FCs~HRy~-e~H~C~fDy 64 (74)
T 1wfl_A 25 KNRCFMCRKKVGLTG----FDC-RCGNLFCGLHRYS-DKHNCPYDY 64 (74)
T ss_dssp TTBCSSSCCBCGGGC----EEC-TTSCEECSSSCST-TTTTCCCCG
T ss_pred CCcChhhCCcccccC----eec-CCCCEechhcCCC-ccCCCcchh
Confidence 458999999988764 899 4999999876544 455555543
No 53
>2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1
Probab=87.40 E-value=0.49 Score=29.24 Aligned_cols=29 Identities=10% Similarity=0.233 Sum_probs=22.0
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-.||.|+...+....=..+.|..|+..|
T Consensus 8 iL~CP~ck~~L~~~~~~~~LiC~~cg~~Y 36 (69)
T 2pk7_A 8 ILACPICKGPLKLSADKTELISKGAGLAY 36 (69)
T ss_dssp TCCCTTTCCCCEECTTSSEEEETTTTEEE
T ss_pred heeCCCCCCcCeEeCCCCEEEcCCCCcEe
Confidence 56899999999877665678887665544
No 54
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=87.26 E-value=0.32 Score=29.40 Aligned_cols=37 Identities=19% Similarity=0.482 Sum_probs=26.6
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+.... . .....|+|.||+.|...|...
T Consensus 14 ~~~C~IC~~~~~~~~--~-~~~~~C~H~fc~~Ci~~~~~~ 50 (69)
T 2kiz_A 14 EEKCTICLSILEEGE--D-VRRLPCMHLFHQVCVDQWLIT 50 (69)
T ss_dssp CCSBTTTTBCCCSSS--C-EEECTTSCEEEHHHHHHHHHH
T ss_pred CCCCeeCCccccCCC--c-EEEeCCCCHHHHHHHHHHHHc
Confidence 467999987774322 2 333369999999999999754
No 55
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=87.06 E-value=0.2 Score=30.85 Aligned_cols=37 Identities=24% Similarity=0.442 Sum_probs=26.8
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+..... .... .|+|.||+.|...|...
T Consensus 15 ~~~C~IC~~~~~~~~~--~~~~-~C~H~f~~~Ci~~~~~~ 51 (74)
T 2ep4_A 15 HELCAVCLEDFKPRDE--LGIC-PCKHAFHRKCLIKWLEV 51 (74)
T ss_dssp SCBCSSSCCBCCSSSC--EEEE-TTTEEEEHHHHHHHHHH
T ss_pred CCCCcCCCcccCCCCc--EEEc-CCCCEecHHHHHHHHHc
Confidence 3569999888754432 2333 59999999999999754
No 56
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=86.64 E-value=0.32 Score=34.05 Aligned_cols=34 Identities=24% Similarity=0.618 Sum_probs=26.2
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
-.||-|...+. +-++- .|||.||..|...|....
T Consensus 54 ~~C~iC~~~~~-----~~~~~-~CgH~fc~~Ci~~~~~~~ 87 (138)
T 4ayc_A 54 LQCIICSEYFI-----EAVTL-NCAHSFCSYCINEWMKRK 87 (138)
T ss_dssp SBCTTTCSBCS-----SEEEE-TTSCEEEHHHHHHHTTTC
T ss_pred CCCcccCcccC-----CceEC-CCCCCccHHHHHHHHHcC
Confidence 46999988773 23555 599999999999997644
No 57
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=86.35 E-value=0.15 Score=31.59 Aligned_cols=37 Identities=22% Similarity=0.473 Sum_probs=25.7
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...++... .+....|+|.||+.|...|...
T Consensus 23 ~~~C~IC~~~~~~~~---~~~~l~C~H~fh~~Ci~~w~~~ 59 (75)
T 1x4j_A 23 QTLCVVCMCDFESRQ---LLRVLPCNHEFHAKCVDKWLKA 59 (75)
T ss_dssp CCEETTTTEECCBTC---EEEEETTTEEEETTHHHHHHHH
T ss_pred CCCCeECCcccCCCC---eEEEECCCCHhHHHHHHHHHHc
Confidence 346888887665432 2333359999999999999753
No 58
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=85.91 E-value=0.13 Score=30.47 Aligned_cols=39 Identities=23% Similarity=0.529 Sum_probs=26.4
Q ss_pred CCCCCCCcceEecC-CcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNG-GCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~-GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
..||-|...+.... +=..+.-..|||.||..|...|...
T Consensus 4 ~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~ 43 (64)
T 2xeu_A 4 VSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN 43 (64)
T ss_dssp CBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH
T ss_pred CCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc
Confidence 45888887765431 1123333379999999999999753
No 59
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=85.67 E-value=0.15 Score=32.85 Aligned_cols=33 Identities=15% Similarity=0.415 Sum_probs=24.7
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|...+. +-++-..|||.||+.|...|..
T Consensus 14 ~~C~IC~~~~~-----~p~~~~~CgH~fC~~Ci~~~~~ 46 (92)
T 3ztg_A 14 LLCLICKDIMT-----DAVVIPCCGNSYCDECIRTALL 46 (92)
T ss_dssp TEETTTTEECS-----SCEECTTTCCEECHHHHHHHHH
T ss_pred CCCCCCChhhc-----CceECCCCCCHHHHHHHHHHHH
Confidence 46999987664 3455533999999999999864
No 60
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.51 E-value=0.71 Score=30.62 Aligned_cols=34 Identities=26% Similarity=0.734 Sum_probs=25.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.-.||-|...+.. .++- .|||.||+.|...|...
T Consensus 21 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~~ 54 (112)
T 1jm7_A 21 ILECPICLELIKE-----PVST-KCDHIFCKFCMLKLLNQ 54 (112)
T ss_dssp HTSCSSSCCCCSS-----CCBC-TTSCCCCSHHHHHHHHS
T ss_pred CCCCcccChhhcC-----eEEC-CCCCHHHHHHHHHHHHh
Confidence 4579999887732 2333 69999999999999764
No 61
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=85.33 E-value=0.24 Score=30.13 Aligned_cols=32 Identities=25% Similarity=0.596 Sum_probs=25.1
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+.. +.= .|+|.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~------~~~-~CgH~fc~~Ci~~~~~ 46 (70)
T 2ecn_A 15 EEECCICMDGRAD------LIL-PCAHSFCQKCIDKWSD 46 (70)
T ss_dssp CCCCSSSCCSCCS------EEE-TTTEEECHHHHHHSSC
T ss_pred CCCCeeCCcCccC------ccc-CCCCcccHHHHHHHHH
Confidence 4579999887643 444 6999999999999976
No 62
>3h0g_I DNA-directed RNA polymerases I, II, and III subunit rpabc5; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=85.30 E-value=0.63 Score=31.59 Aligned_cols=29 Identities=14% Similarity=0.366 Sum_probs=23.6
Q ss_pred CCCCCCCCcceEec----CCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKN----GGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~----~GC~~m~C~~C~~~f 149 (191)
.+=||.|+.++... .+.+.+.|..|++.+
T Consensus 4 m~FCp~Cgn~L~~~~~~~~~~~~~~C~~C~y~~ 36 (113)
T 3h0g_I 4 FQYCIECNNMLYPREDKVDRVLRLACRNCDYSE 36 (113)
T ss_dssp CCCCSSSCCCCEECCCTTTCCCCEECSSSCCEE
T ss_pred ceeCcCCCCEeeEcccCCCCeeEEECCCCCCeE
Confidence 46799999998653 368899999999977
No 63
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=85.26 E-value=0.51 Score=31.91 Aligned_cols=35 Identities=23% Similarity=0.599 Sum_probs=25.9
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
..-.||-|...+.. .++-..|||.||+.|...|..
T Consensus 21 ~~~~C~IC~~~~~~-----pv~~~~CgH~fC~~Ci~~~~~ 55 (117)
T 1jm7_B 21 KLLRCSRCTNILRE-----PVCLGGCEHIFCSNCVSDCIG 55 (117)
T ss_dssp HTTSCSSSCSCCSS-----CBCCCSSSCCBCTTTGGGGTT
T ss_pred hCCCCCCCChHhhC-----ccEeCCCCCHHHHHHHHHHhc
Confidence 35679999887742 233325999999999999876
No 64
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.71 E-value=0.15 Score=29.70 Aligned_cols=33 Identities=21% Similarity=0.631 Sum_probs=25.0
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+... +.- .|+|.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~p-----~~~-~CgH~fC~~Ci~~~~~ 47 (58)
T 2ecj_A 15 EASCSVCLEYLKEP-----VII-ECGHNFCKACITRWWE 47 (58)
T ss_dssp CCBCSSSCCBCSSC-----CCC-SSCCCCCHHHHHHHTT
T ss_pred CCCCccCCcccCcc-----EeC-CCCCccCHHHHHHHHH
Confidence 35699998877532 333 6999999999999954
No 65
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.58 E-value=0.2 Score=30.19 Aligned_cols=39 Identities=26% Similarity=0.547 Sum_probs=27.1
Q ss_pred CCCCCCCCcceEecC-CcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNG-GCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~-GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+.... .=..+.-..|+|.||+.|...|..
T Consensus 15 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~ 54 (69)
T 2ea6_A 15 TVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLK 54 (69)
T ss_dssp CCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHH
T ss_pred CCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHH
Confidence 457898888776532 112223347999999999999975
No 66
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=84.35 E-value=0.64 Score=29.00 Aligned_cols=33 Identities=27% Similarity=0.709 Sum_probs=24.9
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+.. .++- .|+|.||..|...|..
T Consensus 19 ~~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 51 (85)
T 2ecv_A 19 EVTCPICLELLTQ-----PLSL-DCGHSFCQACLTANHK 51 (85)
T ss_dssp CCCCTTTCSCCSS-----CBCC-SSSCCBCTTHHHHHHH
T ss_pred CCCCCCCCcccCC-----ceeC-CCCCHHHHHHHHHHHH
Confidence 3579999887743 2333 6999999999999864
No 67
>2kpi_A Uncharacterized protein SCO3027; zinc finger, PSI-2, NESG, all beta, structural genomics, protein structure initiative; NMR {Streptomyces coelicolor}
Probab=84.11 E-value=0.94 Score=26.70 Aligned_cols=27 Identities=26% Similarity=0.764 Sum_probs=20.7
Q ss_pred CCCCCCCCcceEecCCcCceEeC--CCCcce
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCY--HCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~--~C~~~f 149 (191)
.-.||.|+...+... ....|. .|+..|
T Consensus 10 iL~CP~c~~~L~~~~--~~L~C~~~~c~~~Y 38 (56)
T 2kpi_A 10 ILACPACHAPLEERD--AELICTGQDCGLAY 38 (56)
T ss_dssp SCCCSSSCSCEEEET--TEEEECSSSCCCEE
T ss_pred heeCCCCCCcceecC--CEEEcCCcCCCcEE
Confidence 458999999998877 567786 576554
No 68
>2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1
Probab=83.85 E-value=0.83 Score=28.04 Aligned_cols=30 Identities=10% Similarity=0.041 Sum_probs=22.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
..-.||.|+...+....=..+.|..|+..|
T Consensus 9 eiL~CP~ck~~L~~~~~~g~LvC~~c~~~Y 38 (67)
T 2jny_A 9 EVLACPKDKGPLRYLESEQLLVNERLNLAY 38 (67)
T ss_dssp CCCBCTTTCCBCEEETTTTEEEETTTTEEE
T ss_pred HHhCCCCCCCcCeEeCCCCEEEcCCCCccc
Confidence 356899999999887655568887665554
No 69
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=83.72 E-value=0.29 Score=33.51 Aligned_cols=32 Identities=22% Similarity=0.560 Sum_probs=25.4
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|...+. +-++- .|||.||..|...|..
T Consensus 53 ~~C~IC~~~~~-----~p~~~-~CgH~fC~~Ci~~~~~ 84 (124)
T 3fl2_A 53 FQCICCQELVF-----RPITT-VCQHNVCKDCLDRSFR 84 (124)
T ss_dssp TBCTTTSSBCS-----SEEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChHHc-----CcEEe-eCCCcccHHHHHHHHh
Confidence 46999988775 33444 6999999999998875
No 70
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=83.45 E-value=0.75 Score=28.42 Aligned_cols=33 Identities=9% Similarity=0.179 Sum_probs=25.8
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+. +-++- .|||.||..|...|...
T Consensus 9 ~~C~IC~~~~~-----~Pv~~-~CgH~fc~~Ci~~~~~~ 41 (78)
T 1t1h_A 9 FRCPISLELMK-----DPVIV-STGQTYERSSIQKWLDA 41 (78)
T ss_dssp SSCTTTSCCCS-----SEEEE-TTTEEEEHHHHHHHHTT
T ss_pred CCCCCcccccc-----CCEEc-CCCCeecHHHHHHHHHH
Confidence 46999988764 23555 59999999999999864
No 71
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=83.12 E-value=0.71 Score=28.84 Aligned_cols=42 Identities=14% Similarity=0.354 Sum_probs=29.9
Q ss_pred hcCCCCCCCCcceEecCCcCceEeCCCCcceecccccccccCCCCCCC
Q psy271 119 AHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGPLKT 166 (191)
Q Consensus 119 ~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~~~~~~ 166 (191)
....+|..|+..+... -+.| +|+..||-.=.-+ +.|...|..
T Consensus 23 ~~~~RC~~C~kkvgL~----~f~C-rCg~~FCs~HRy~-e~H~C~fDy 64 (74)
T 1wfp_A 23 STATRCLSCNKKVGVT----GFKC-RCGSTFCGTHRYP-ESHECQFDF 64 (74)
T ss_dssp CCCCBCSSSCCBCTTT----CEEC-TTSCEECTTTCST-TTSCCCSCT
T ss_pred ccCccchhhcCccccc----ceEe-ccCCEeccccCCC-cCCCCcCch
Confidence 3457899999888776 4899 7999999876544 445544433
No 72
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=83.04 E-value=0.44 Score=29.85 Aligned_cols=34 Identities=21% Similarity=0.511 Sum_probs=25.7
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
...||-|...+.. .++ ..|||.||+.|...|...
T Consensus 15 ~~~C~IC~~~~~~-----p~~-~~CgH~fC~~Ci~~~~~~ 48 (81)
T 2csy_A 15 PFRCFICRQAFQN-----PVV-TKCRHYFCESCALEHFRA 48 (81)
T ss_dssp CSBCSSSCSBCCS-----EEE-CTTSCEEEHHHHHHHHHH
T ss_pred CCCCcCCCchhcC-----eeE-ccCCCHhHHHHHHHHHHC
Confidence 3479999888733 344 369999999999999753
No 73
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=82.88 E-value=0.39 Score=33.91 Aligned_cols=33 Identities=24% Similarity=0.755 Sum_probs=26.2
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+. +-++. .||+.||..|...|...
T Consensus 32 ~~C~IC~~~~~-----~pv~~-~CgH~FC~~Ci~~~~~~ 64 (141)
T 3knv_A 32 YLCSACRNVLR-----RPFQA-QCGHRYCSFCLASILSS 64 (141)
T ss_dssp GBCTTTCSBCS-----SEEEC-TTSCEEEHHHHHHHGGG
T ss_pred cCCCCCChhhc-----CcEEC-CCCCccCHHHHHHHHhc
Confidence 46999988773 33665 69999999999999753
No 74
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=82.88 E-value=0.31 Score=30.54 Aligned_cols=33 Identities=24% Similarity=0.761 Sum_probs=25.2
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+.. .++- .|+|.||+.|...|...
T Consensus 20 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~~ 52 (85)
T 2ecw_A 20 VTCPICLELLKE-----PVSA-DCNHSFCRACITLNYES 52 (85)
T ss_dssp TSCTTTCSCCSS-----CEEC-TTSCCBCHHHHHHHHHH
T ss_pred CCCcCCChhhCc-----ceeC-CCCCHHHHHHHHHHHHh
Confidence 479999887643 2454 59999999999998654
No 75
>2akl_A PHNA-like protein PA0128; two domains, Zn binding protein, beta-strand protein, structural genomics, PSI; NMR {Pseudomonas aeruginosa PAO1} SCOP: b.34.11.2 g.41.3.5
Probab=82.82 E-value=0.83 Score=31.71 Aligned_cols=30 Identities=27% Similarity=0.703 Sum_probs=21.7
Q ss_pred hcCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 119 AHTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 119 ~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.+.-+||+|+.-+.-.+|=+ ..|.-|+++|
T Consensus 25 ~~lP~CP~C~seytYeDg~l-~vCPeC~hEW 54 (138)
T 2akl_A 25 STLPPCPQCNSEYTYEDGAL-LVCPECAHEW 54 (138)
T ss_dssp CCSCCCTTTCCCCCEECSSS-EEETTTTEEE
T ss_pred ccCCCCCCCCCcceEecCCe-EECCcccccc
Confidence 34578999999998887754 7787555443
No 76
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=82.64 E-value=0.31 Score=31.51 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=25.9
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccCC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
..||-|...+.... ..+.- .|+|.||+.|...|....
T Consensus 41 ~~C~IC~~~~~~~~--~~~~l-~C~H~Fh~~Ci~~wl~~~ 77 (91)
T 2l0b_A 41 MCCPICCSEYVKGD--VATEL-PCHHYFHKPCVSIWLQKS 77 (91)
T ss_dssp SEETTTTEECCTTC--EEEEE-TTTEEEEHHHHHHHHTTT
T ss_pred CCCcccChhhcCCC--cEEec-CCCChHHHHHHHHHHHcC
Confidence 46888877664332 23333 599999999999997643
No 77
>1twf_I B12.6, DNA-directed RNA polymerase II 14.2 kDa polypepti; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.3.1 g.41.3.1 PDB: 1i3q_I 1i6h_I 1k83_I* 1nik_I 1nt9_I 1pqv_I 1r5u_I 1r9s_I* 1r9t_I* 1sfo_I* 1twa_I* 1twc_I* 1i50_I* 1twg_I* 1twh_I* 1wcm_I 1y1v_I 1y1w_I 1y1y_I 1y77_I* ...
Probab=81.30 E-value=0.78 Score=31.58 Aligned_cols=29 Identities=14% Similarity=0.299 Sum_probs=23.5
Q ss_pred CCCCCCCCcceEec----CCcCceEeCCCCcce
Q psy271 121 TKDCPKCHICIEKN----GGCNHMQCYHCKHEF 149 (191)
Q Consensus 121 ~k~CP~C~~~i~k~----~GC~~m~C~~C~~~f 149 (191)
.+=||.|+.++.-. .+-+.+.|..|++.+
T Consensus 4 ~~FCp~CgnlL~~~~~~~~~~~~~~C~~C~y~~ 36 (122)
T 1twf_I 4 FRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 36 (122)
T ss_dssp CCBCSSSCCBCEEEEETTTTEEEEECSSSSCEE
T ss_pred CCcccccCccCcccccCcCCCCEEECCcCCCee
Confidence 45699999888743 668899999999876
No 78
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=80.78 E-value=0.37 Score=32.90 Aligned_cols=40 Identities=28% Similarity=0.601 Sum_probs=24.8
Q ss_pred CCCCCCCCcceEec--CCcCceEeCCCCcceecccccccccCC
Q psy271 121 TKDCPKCHICIEKN--GGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 121 ~k~CP~C~~~i~k~--~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
...||-|...++.. .+=..+.. .|||.||+.|..+|....
T Consensus 72 ~~~C~iC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~ 113 (133)
T 4ap4_A 72 TVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA 113 (133)
T ss_dssp SCBCTTTCCBHHHHHHTTCCEEEE-TTSBEEEHHHHHHHHHHC
T ss_pred CCCCCCCCCccccccccCcceEeC-CCCChhhHHHHHHHHHcC
Confidence 34455555554432 11122455 699999999999997543
No 79
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=80.63 E-value=0.74 Score=30.87 Aligned_cols=32 Identities=22% Similarity=0.641 Sum_probs=24.5
Q ss_pred CCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.||-|...+.. -++= .|||.||..|...|...
T Consensus 17 ~C~iC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~~ 48 (115)
T 3l11_A 17 QCGICMEILVE-----PVTL-PCNHTLCKPCFQSTVEK 48 (115)
T ss_dssp BCTTTCSBCSS-----CEEC-TTSCEECHHHHCCCCCT
T ss_pred CCccCCcccCc-----eeEc-CCCCHHhHHHHHHHHhH
Confidence 59999877642 3333 69999999999999854
No 80
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=80.33 E-value=0.41 Score=32.45 Aligned_cols=32 Identities=31% Similarity=0.868 Sum_probs=25.2
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|...+.. -++. .||+.||+.|...|..
T Consensus 19 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~ 50 (118)
T 3hct_A 19 YECPICLMALRE-----AVQT-PCGHRFCKACIIKSIR 50 (118)
T ss_dssp GBCTTTCSBCSS-----EEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCCcCChhhcC-----eEEC-CcCChhhHHHHHHHHh
Confidence 469999887742 2555 6999999999999865
No 81
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=79.95 E-value=1.2 Score=38.27 Aligned_cols=34 Identities=50% Similarity=0.738 Sum_probs=28.6
Q ss_pred ccCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 158 IDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.++.++.....+++++..+|+++.|.++.+||+|
T Consensus 115 iDg~g~i~~~~~~pi~~~ap~~~~R~~v~epl~T 148 (513)
T 3oaa_A 115 IDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQT 148 (513)
T ss_dssp TTCSCSCCCSCEEESSCCCCCSSSCCCCCCBCCC
T ss_pred ccCCCCCCccceeecccCCCCccccCCcCccccc
Confidence 3345566667788999999999999999999997
No 82
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=79.59 E-value=0.53 Score=31.66 Aligned_cols=33 Identities=24% Similarity=0.687 Sum_probs=25.8
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|...+.. -++- .|||.||+.|...|...
T Consensus 24 ~~C~IC~~~~~~-----p~~~-~CgH~fC~~Ci~~~~~~ 56 (116)
T 1rmd_A 24 ISCQICEHILAD-----PVET-SCKHLFCRICILRCLKV 56 (116)
T ss_dssp TBCTTTCSBCSS-----EEEC-TTSCEEEHHHHHHHHHH
T ss_pred CCCCCCCcHhcC-----cEEc-CCCCcccHHHHHHHHhH
Confidence 469999888742 3453 69999999999999754
No 83
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=79.23 E-value=0.64 Score=29.66 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=21.5
Q ss_pred CCCCCCcceEecCCcCceEeCCCC--cceecccccccc
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCK--HEFCWMCLGNTI 158 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~--~~fC~~C~~~~~ 158 (191)
-||.|+.++|+ |..|| .+||-.|+.-.+
T Consensus 33 fCPeCgq~Le~--------lkACGA~~yFC~~C~~LiS 62 (81)
T 2jrp_A 33 LCPDCRQPLQV--------LKACGAVDYFCQNGHGLIS 62 (81)
T ss_dssp ECSSSCSCCCE--------EEETTEEEECCTTTTCCCC
T ss_pred cCcchhhHHHH--------HHhcCCcCeeeccCCCEee
Confidence 69999999998 55566 678888876433
No 84
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=78.48 E-value=0.93 Score=31.76 Aligned_cols=31 Identities=13% Similarity=0.283 Sum_probs=24.3
Q ss_pred hcCCCCCCCCcceEec----CCcCceEeCCCCcce
Q psy271 119 AHTKDCPKCHICIEKN----GGCNHMQCYHCKHEF 149 (191)
Q Consensus 119 ~~~k~CP~C~~~i~k~----~GC~~m~C~~C~~~f 149 (191)
...+=||.|+.+..-. .+.+.+.|.+|+|.+
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLFECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCCBCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEEECCCCCCcE
Confidence 3567899999987532 367889999999976
No 85
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=77.31 E-value=1.1 Score=28.18 Aligned_cols=25 Identities=20% Similarity=0.481 Sum_probs=18.6
Q ss_pred CcCceEeCCCCcceecccccccccCC
Q psy271 136 GCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 136 GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
.+..+.- .|+|.|+..|...|....
T Consensus 40 ~~~~~~~-~C~H~FH~~Ci~~Wl~~~ 64 (81)
T 2ecl_A 40 DCVVVWG-ECNHSFHNCCMSLWVKQN 64 (81)
T ss_dssp TCCEEEE-TTSCEEEHHHHHHHTTTC
T ss_pred ceEEEeC-CCCCccChHHHHHHHHhC
Confidence 3444444 699999999999997643
No 86
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=77.01 E-value=1.5 Score=32.16 Aligned_cols=25 Identities=20% Similarity=0.664 Sum_probs=21.0
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~ 148 (191)
-.|+.|+.+..+.+ ++|.|..|+..
T Consensus 141 a~~~~~g~~m~~~~--~~~~cp~~g~~ 165 (179)
T 3m7n_A 141 ALCSNCKTEMVREG--DILKCPECGRV 165 (179)
T ss_dssp CBCTTTCCBCEECS--SSEECSSSCCE
T ss_pred ecccccCCceEECC--CEEECCCCCCE
Confidence 46999999998876 99999977753
No 87
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=76.00 E-value=1.7 Score=27.51 Aligned_cols=41 Identities=22% Similarity=0.629 Sum_probs=28.2
Q ss_pred HHHH-hcCCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 115 NYIS-AHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 115 ~~~~-~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
.|+. .....|..|+..... .--.-.|..||.-||..|....
T Consensus 12 ~W~~d~~~~~C~~C~~~Fs~--~~RrHHCR~CG~v~C~~Cs~~~ 53 (82)
T 2yw8_A 12 AWLKDDEATHCRQCEKEFSI--SRRKHHCRNCGHIFCNTCSSNE 53 (82)
T ss_dssp ---CCCCCCBCTTTCCBCBT--TBCCEECTTTCCEECSGGGCEE
T ss_pred ccccCccCCcccCcCCcccC--ccccccCCCCCCEEChHHhCCe
Confidence 4665 346789999988743 2334678889999999998753
No 88
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=75.77 E-value=0.91 Score=32.29 Aligned_cols=34 Identities=21% Similarity=0.497 Sum_probs=26.1
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.-.||-|...+. +.++- .|||.||+.|...|...
T Consensus 78 ~~~C~IC~~~~~-----~pv~~-~CgH~fC~~Ci~~~~~~ 111 (150)
T 1z6u_A 78 SFMCVCCQELVY-----QPVTT-ECFHNVCKDCLQRSFKA 111 (150)
T ss_dssp HTBCTTTSSBCS-----SEEEC-TTSCEEEHHHHHHHHHT
T ss_pred CCEeecCChhhc-----CCEEc-CCCCchhHHHHHHHHHh
Confidence 357999988773 23443 69999999999999864
No 89
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=75.17 E-value=0.55 Score=31.19 Aligned_cols=8 Identities=50% Similarity=1.157 Sum_probs=4.7
Q ss_pred CCCCCcce
Q psy271 124 CPKCHICI 131 (191)
Q Consensus 124 CP~C~~~i 131 (191)
|++|..+|
T Consensus 4 C~~C~~Pi 11 (101)
T 3vk6_A 4 CDKCGLPI 11 (101)
T ss_dssp CTTTCSBC
T ss_pred cCccCCCe
Confidence 55555555
No 90
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=75.15 E-value=1.4 Score=29.36 Aligned_cols=37 Identities=24% Similarity=0.457 Sum_probs=24.6
Q ss_pred CCCCCCCcceEecCCc------------CceEeCCCCcceecccccccc
Q psy271 122 KDCPKCHICIEKNGGC------------NHMQCYHCKHEFCWMCLGNTI 158 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC------------~~m~C~~C~~~fC~~C~~~~~ 158 (191)
-.||-|...++...+. ....-..|+|.||..|+..|.
T Consensus 26 ~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl 74 (114)
T 1v87_A 26 EDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMY 74 (114)
T ss_dssp CEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHH
T ss_pred CcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHH
Confidence 3688887776443211 112234699999999999997
No 91
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=74.67 E-value=1.9 Score=36.86 Aligned_cols=34 Identities=41% Similarity=0.789 Sum_probs=27.9
Q ss_pred ccCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 158 IDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.++.++.....+++++..+|+++.|.++.+||+|
T Consensus 115 iDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~T 148 (502)
T 2qe7_A 115 LDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQT 148 (502)
T ss_dssp SSCSCCCCCCCEEESSCCCCCTTSBCCCCSBCCC
T ss_pred CCCCCCCCCCceeeccCCCCCcccccCCCCcccc
Confidence 3344555556688999999999999999999997
No 92
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=74.28 E-value=0.36 Score=28.89 Aligned_cols=30 Identities=23% Similarity=0.565 Sum_probs=22.9
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCL 154 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~ 154 (191)
..|-.|...+...+ ...|.+|+..||..|-
T Consensus 16 ~~C~~C~~~~~~~~---~y~C~~C~~~FC~dCD 45 (59)
T 1z60_A 16 RFCYGCQGELKDQH---VYVCAVCQNVFCVDCD 45 (59)
T ss_dssp CEETTTTEECTTSE---EECCTTTTCCBCHHHH
T ss_pred CcccccCcccCCCc---cEECCccCcCcccchh
Confidence 45888988884332 2679999999999994
No 93
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=73.48 E-value=1.3 Score=27.39 Aligned_cols=24 Identities=21% Similarity=0.643 Sum_probs=14.2
Q ss_pred CCCCCCcceEecCCcCceEeCCCCc
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~~ 147 (191)
.|+.|+..++...+ +-+.|..||+
T Consensus 30 ~C~~CG~~~e~~~~-d~irCp~CG~ 53 (70)
T 1twf_L 30 ICAECSSKLSLSRT-DAVRCKDCGH 53 (70)
T ss_dssp ECSSSCCEECCCTT-STTCCSSSCC
T ss_pred ECCCCCCcceeCCC-CCccCCCCCc
Confidence 57777777666543 3455655554
No 94
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=73.43 E-value=2.8 Score=24.78 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=16.2
Q ss_pred CCCCCCCCc-ceEecCCcCceEeCCCC
Q psy271 121 TKDCPKCHI-CIEKNGGCNHMQCYHCK 146 (191)
Q Consensus 121 ~k~CP~C~~-~i~k~~GC~~m~C~~C~ 146 (191)
...||.|+. .|....-=.-+.|..||
T Consensus 11 ~~~Cp~C~~~~lv~D~~~ge~vC~~CG 37 (58)
T 1dl6_A 11 RVTCPNHPDAILVEDYRAGDMICPECG 37 (58)
T ss_dssp CCSBTTBSSSCCEECSSSCCEECTTTC
T ss_pred cccCcCCCCCceeEeCCCCeEEeCCCC
Confidence 457999976 55554333357777554
No 95
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=73.10 E-value=2 Score=36.79 Aligned_cols=34 Identities=76% Similarity=1.270 Sum_probs=28.2
Q ss_pred ccCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 158 IDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.++.++.....+++++..+|+++.|.++.+||+|
T Consensus 115 iDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~T 148 (510)
T 2ck3_A 115 IDGKGPIGSKARRRVGLKAPGIIPRISVREPMQT 148 (510)
T ss_dssp CSSSCCCCCSEEEESSCCCCCSTTBCCCCSBCCC
T ss_pred cCCCCCCCccceeecccCCCCcccccccCccccc
Confidence 3455566666688999999999999999999997
No 96
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=72.81 E-value=0.88 Score=32.80 Aligned_cols=32 Identities=31% Similarity=0.868 Sum_probs=25.9
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|...+.. -+++ .||+.||..|...|..
T Consensus 19 ~~C~IC~~~~~~-----pv~~-~CgH~fC~~Ci~~~~~ 50 (170)
T 3hcs_A 19 YECPICLMALRE-----AVQT-PCGHRFCKACIIKSIR 50 (170)
T ss_dssp GBCTTTCSBCSS-----EEEC-TTSCEEEHHHHHHHHH
T ss_pred CCCCCCChhhcC-----cEEC-CCCCHHHHHHHHHHHH
Confidence 469999988743 3676 6999999999999864
No 97
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=72.28 E-value=1.3 Score=29.98 Aligned_cols=41 Identities=27% Similarity=0.575 Sum_probs=27.9
Q ss_pred cCCCCCCCCcceEec--CCcCceEeCCCCcceecccccccccCC
Q psy271 120 HTKDCPKCHICIEKN--GGCNHMQCYHCKHEFCWMCLGNTIDGK 161 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~--~GC~~m~C~~C~~~fC~~C~~~~~~~~ 161 (191)
+.-.||-|...+... +|=.-++- .|||.||+.|...|....
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~-~CgH~fc~~Ci~~~~~~~ 48 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVST-ECGHVFCSQCLRDSLKNA 48 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEE-TTCCEEEHHHHHHHHTTC
T ss_pred CCCCCcccChhhhCccccccCeEec-CCCChhhHHHHHHHHHhC
Confidence 345789888777543 23222334 699999999999996543
No 98
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=72.10 E-value=2.3 Score=30.32 Aligned_cols=31 Identities=13% Similarity=0.430 Sum_probs=23.3
Q ss_pred CCCCCC--CCcceEecCCcCceEeCCCCcceec
Q psy271 121 TKDCPK--CHICIEKNGGCNHMQCYHCKHEFCW 151 (191)
Q Consensus 121 ~k~CP~--C~~~i~k~~GC~~m~C~~C~~~fC~ 151 (191)
.+.||+ |+.-+.-..-=+...|.+|++-|++
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~t~~~ 150 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHSVYKV 150 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSSCCEE
T ss_pred cCcCCCccCCCceEecccCCCcccCCCceEEEe
Confidence 478999 9986544333368899999998876
No 99
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=71.38 E-value=3 Score=26.95 Aligned_cols=40 Identities=18% Similarity=0.392 Sum_probs=27.5
Q ss_pred CCccccCCcccCccchHHHHHHHhhccChHHHHHHHHhcCCCCCCCCcceEecCCcC
Q psy271 82 REPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHICIEKNGGCN 138 (191)
Q Consensus 82 ~~C~~Cgv~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~k~~GC~ 138 (191)
..|-.|+.+.-. +|.+|.. +...+.||+|+..+.+..|+.
T Consensus 36 VAC~eC~FPvCr--pCyEYEr---------------keG~q~CpqCktrYkr~kgsp 75 (93)
T 1weo_A 36 VACNECGFPACR--PCYEYER---------------REGTQNCPQCKTRYKRLRGSP 75 (93)
T ss_dssp CSCSSSCCCCCH--HHHHHHH---------------HTSCSSCTTTCCCCCCCTTCC
T ss_pred EeeeccCChhhH--HHHHHHH---------------hccCccccccCCccccccCCC
Confidence 348888877543 5666533 256789999999997666654
No 100
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=70.89 E-value=4.1 Score=25.79 Aligned_cols=36 Identities=19% Similarity=0.535 Sum_probs=26.7
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
....|..|+...... =-.=.|..||.-||..|....
T Consensus 13 ~~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~~ 48 (84)
T 1x4u_A 13 NFGNCTGCSATFSVL--KKRRSCSNCGNSFCSRCCSFK 48 (84)
T ss_dssp CCSSCSSSCCCCCSS--SCCEECSSSCCEECTTTSCEE
T ss_pred CCCcCcCcCCccccc--hhhhhhcCCCcEEChhhcCCc
Confidence 356899999887432 234678889999999997653
No 101
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=70.63 E-value=4.2 Score=33.62 Aligned_cols=33 Identities=21% Similarity=0.430 Sum_probs=25.0
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|..... + +.-..|||.||+.|...|..
T Consensus 332 ~~~C~ICle~~~-----~-pv~lpCGH~FC~~Ci~~wl~ 364 (389)
T 2y1n_A 332 FQLCKICAENDK-----D-VKIEPCGHLMCTSCLTSWQE 364 (389)
T ss_dssp SSBCTTTSSSBC-----C-EEEETTCCEECHHHHHHHHH
T ss_pred CCCCCccCcCCC-----C-eEEeCCCChhhHHHHHHHHh
Confidence 468999977662 2 33346999999999999965
No 102
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=70.30 E-value=3.1 Score=26.79 Aligned_cols=34 Identities=24% Similarity=0.557 Sum_probs=25.4
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGN 156 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~ 156 (191)
...|..|+...... --.-.|..||.-||..|...
T Consensus 9 ~~~C~~C~~~F~~~--~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 9 ESRCYGCAVKFTLF--KKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CSBCTTTCCBCCSS--SCEEECSSSCCEEETTTSCE
T ss_pred CCCCcCcCCcccCc--cccccCCCCCCEEChhHcCC
Confidence 46788898876433 23457888999999999865
No 103
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=70.15 E-value=2.5 Score=36.18 Aligned_cols=34 Identities=41% Similarity=0.697 Sum_probs=28.1
Q ss_pred ccCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 158 IDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.++.++.....+++++..+|+++.|.++.+||+|
T Consensus 116 iDg~g~i~~~~~~pi~~~~p~~~~R~~v~epl~T 149 (507)
T 1fx0_A 116 IDGRGEITASESRLIESPAPGIMSRRSVYEPLQT 149 (507)
T ss_dssp SSSSCCCCCSEEEESSCCCCCSSSBCCCCSBCCC
T ss_pred CCCCCCCCCCceeeccCCCCCcccccccCCcccc
Confidence 3445566666688999999999999999999987
No 104
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=69.45 E-value=2.1 Score=36.81 Aligned_cols=34 Identities=44% Similarity=0.781 Sum_probs=28.3
Q ss_pred ccCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 158 IDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.++.++.....+++++..+|+++.|.++.+||+|
T Consensus 128 iDg~g~i~~~~~~pi~~~~P~~~~R~~v~epl~T 161 (515)
T 2r9v_A 128 LDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQT 161 (515)
T ss_dssp CSSSCCCCCSEEEESCCCCCCGGGBCCCCSEECC
T ss_pred cCCCCCCCccceeecccCCCCcccccCCCcchhc
Confidence 3455566666788999999999999999999987
No 105
>1wii_A Hypothetical UPF0222 protein MGC4549; domain of unknown function, zinc finger, metal-binding protein, structural genomics; NMR {Mus musculus} SCOP: g.41.3.4
Probab=69.18 E-value=2.9 Score=26.80 Aligned_cols=28 Identities=25% Similarity=0.662 Sum_probs=19.0
Q ss_pred CCCCCCCcc------eEecCCcCceEeCCCCcce
Q psy271 122 KDCPKCHIC------IEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 122 k~CP~C~~~------i~k~~GC~~m~C~~C~~~f 149 (191)
=.||.|+.. +.|..|=-++.|..|+..|
T Consensus 24 F~CPfCnh~~sV~vkidk~~~~g~l~C~~Cg~~~ 57 (85)
T 1wii_A 24 FTCPFCNHEKSCDVKMDRARNTGVISCTVCLEEF 57 (85)
T ss_dssp CCCTTTCCSSCEEEEEETTTTEEEEEESSSCCEE
T ss_pred EcCCCCCCCCeEEEEEEccCCEEEEEcccCCCeE
Confidence 468888766 3345666678888666665
No 106
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=68.38 E-value=3.6 Score=28.27 Aligned_cols=35 Identities=20% Similarity=0.601 Sum_probs=26.5
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
...|+.|+...... =-.-.|..||.-||..|....
T Consensus 69 ~~~C~~C~~~Fs~~--~RrHHCR~CG~vfC~~Cs~~~ 103 (125)
T 1joc_A 69 VQNCMACGKGFSVT--VRRHHCRQCGNIFCAECSAKN 103 (125)
T ss_dssp CCBCTTTCCBCCSS--SCCEECTTTCCEECGGGSCEE
T ss_pred CCCCcCcCCccccc--cccccCCCCCeEEChHHhCCc
Confidence 45699999876432 244678899999999998654
No 107
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=68.21 E-value=4.7 Score=25.93 Aligned_cols=37 Identities=19% Similarity=0.590 Sum_probs=27.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceecccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTI 158 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~ 158 (191)
....|..|+...... =..-.|..||.-||..|.....
T Consensus 19 ~~~~C~~C~~~F~~~--~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFT--KRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSS--SCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccch--hhCccccCCCCEECCcccCCee
Confidence 356799998876432 2246688899999999987644
No 108
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=66.71 E-value=5.8 Score=30.49 Aligned_cols=37 Identities=22% Similarity=0.516 Sum_probs=20.9
Q ss_pred HHHHHHHHhcCCCCCCCCc-ceEecCCcCc---eEeCCCCcc
Q psy271 111 SETANYISAHTKDCPKCHI-CIEKNGGCNH---MQCYHCKHE 148 (191)
Q Consensus 111 ~~~~~~~~~~~k~CP~C~~-~i~k~~GC~~---m~C~~C~~~ 148 (191)
..++.|+..+ .-||.|+. ++.+-+.-.. ..|..|+.+
T Consensus 25 VLTE~Wv~~n-~yCPnCG~~~l~~f~nN~PVaDF~C~~C~Ee 65 (257)
T 4esj_A 25 ILTEDWVYRQ-SYCPNCGNNPLNHFENNRPVADFYCNHCSEE 65 (257)
T ss_dssp HHHHHHHHHH-CCCTTTCCSSCEEC----CCCEEECTTTCCE
T ss_pred hhhHHHHHHC-CcCCCCCChhhhhccCCCcccccccCCcchh
Confidence 3467788755 56999999 5666443322 445544443
No 109
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=66.04 E-value=1.2 Score=30.35 Aligned_cols=37 Identities=19% Similarity=0.508 Sum_probs=0.0
Q ss_pred CCCCCCcceEe--cCCcCceEeCCCCcceecccccccccC
Q psy271 123 DCPKCHICIEK--NGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 123 ~CP~C~~~i~k--~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.|+.|...... .+.|.-+.- .|+|.|+..|...|...
T Consensus 61 ~c~~C~~~~~~~~~~~~~v~~~-~C~H~FH~~CI~~Wl~~ 99 (117)
T 4a0k_B 61 LCIECQANQASATSEECTVAWG-VCNHAFHFHCISRWLKT 99 (117)
T ss_dssp ----------------------------------------
T ss_pred cChhhhcccccccccccccccC-CcCceEcHHHHHHHHHc
Confidence 34455443222 344555555 59999999999999754
No 110
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=66.00 E-value=4.2 Score=25.77 Aligned_cols=36 Identities=17% Similarity=0.501 Sum_probs=26.2
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
....|..|+...... -..-.|..||.-||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~--~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTT--VRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTT--SCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccc--hhcccccCCCcEEChHHhCCe
Confidence 356788888876432 235678889999999997653
No 111
>1x4w_A Hypothetical protein FLJ13222; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.15 E-value=2.7 Score=25.70 Aligned_cols=42 Identities=17% Similarity=0.330 Sum_probs=27.8
Q ss_pred cCCCCCCCCcceEecC--CcCceEeCCCCcceecccccccccCCCCCCC
Q psy271 120 HTKDCPKCHICIEKNG--GCNHMQCYHCKHEFCWMCLGNTIDGKGPLKT 166 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~--GC~~m~C~~C~~~fC~~C~~~~~~~~~~~~~ 166 (191)
...+|-.|+..+...+ | +.| +|+..||-.=.-+ +.|...|..
T Consensus 14 ~~~rC~~C~kk~gL~~~eg---f~C-rCg~~FC~~HRy~-e~H~C~fDy 57 (67)
T 1x4w_A 14 SRRRCFQCQTKLELVQQEL---GSC-RCGYVFCMLHRLP-EQHDCTFDH 57 (67)
T ss_dssp CTTBCSSSCCBCCHHHHHH---HCC-SSSCCCCTTTCST-GGGTCSSCS
T ss_pred cCCcchhhCCeecccccCc---eEe-cCCCEehhccCCc-cccCCcccc
Confidence 3567888888875442 1 578 7999999876544 445555443
No 112
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=65.05 E-value=4.7 Score=29.90 Aligned_cols=30 Identities=27% Similarity=0.469 Sum_probs=22.5
Q ss_pred CCCCCCCCcc-eEecCCcCceEeCCCCcceec
Q psy271 121 TKDCPKCHIC-IEKNGGCNHMQCYHCKHEFCW 151 (191)
Q Consensus 121 ~k~CP~C~~~-i~k~~GC~~m~C~~C~~~fC~ 151 (191)
.+.||+|+.- +...-.+.| .|.+|++-|.+
T Consensus 113 ~~~Cp~Cg~g~fma~h~dR~-~CGkC~~t~~~ 143 (189)
T 2xzm_9 113 QKGCPKCGPGIFMAKHYDRH-YCGKCHLTLKI 143 (189)
T ss_dssp SEECSTTCSSCEEEECSSCE-EETTTCCCBCC
T ss_pred cccCCccCCCccccCccCCC-ccCCceeEEEe
Confidence 4789999966 344555555 99999998865
No 113
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=64.35 E-value=3.6 Score=28.20 Aligned_cols=36 Identities=22% Similarity=0.695 Sum_probs=25.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
....|..|+...... =-+-.|..||.-||..|....
T Consensus 18 ~~~~C~~C~~~Fs~~--~RkHHCR~CG~ifC~~Cs~~~ 53 (120)
T 1y02_A 18 LEPSCKSCGAHFANT--ARKQTCLDCKKNFCMTCSSQV 53 (120)
T ss_dssp --CCCTTTCCCCSSG--GGCEECTTTCCEECGGGEEC-
T ss_pred ccCcccCcCCccccc--cccccCCCCCCeeCHHHhCCC
Confidence 346788888876432 234678889999999997654
No 114
>1k81_A EIF-2-beta, probable translation initiation factor 2 beta subunit; zinc ribbon; NMR {Methanocaldococcus jannaschii} SCOP: g.59.1.1
Probab=63.87 E-value=4.3 Score=21.45 Aligned_cols=26 Identities=27% Similarity=0.576 Sum_probs=18.9
Q ss_pred CCCCCCcc---eEecCCcCceEeCCCCcc
Q psy271 123 DCPKCHIC---IEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 123 ~CP~C~~~---i~k~~GC~~m~C~~C~~~ 148 (191)
.||.|+.+ +.|..+=..+.|..||+.
T Consensus 2 lC~~C~~peT~l~~~~~~~~l~C~aCG~~ 30 (36)
T 1k81_A 2 ICRECGKPDTKIIKEGRVHLLKCMACGAI 30 (36)
T ss_dssp CCSSSCSCEEEEEEETTEEEEEEETTTEE
T ss_pred CCcCCCCCCcEEEEeCCcEEEEhhcCCCc
Confidence 48999876 455667777888877764
No 115
>2f9y_B Acetyl-coenzyme A carboxylase carboxyl transferas beta; zinc ribbon, crotonase superfamily, spiral domain, ligase; 3.20A {Escherichia coli} SCOP: c.14.1.4
Probab=63.50 E-value=1.6 Score=34.87 Aligned_cols=32 Identities=19% Similarity=0.388 Sum_probs=25.0
Q ss_pred cCCCCCCCCcceEecC-CcCceEeCCCCcceec
Q psy271 120 HTKDCPKCHICIEKNG-GCNHMQCYHCKHEFCW 151 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~-GC~~m~C~~C~~~fC~ 151 (191)
-|.+||+|+..+...+ .=|...|..|+|++=.
T Consensus 23 l~~kc~~~~~~~~~~~l~~~~~v~~~~~~~~r~ 55 (304)
T 2f9y_B 23 VWTKCDSCGQVLYRAELERNLEVCPKCDHHMRM 55 (304)
T ss_dssp CEECCTTTCCCEETTHHHHTTTBCTTTCCBCCC
T ss_pred HHHhhhhccchhhHHHHHHHhCCCCCCCCCCCC
Confidence 4789999999998763 2377889889988733
No 116
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=63.04 E-value=3.4 Score=27.50 Aligned_cols=25 Identities=20% Similarity=0.547 Sum_probs=18.5
Q ss_pred CCcCceEeCCCCcceecccccccccC
Q psy271 135 GGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 135 ~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
++|.-+.- .|+|.|+..|...|...
T Consensus 64 ~~~~~~~~-~C~H~FH~~Ci~~Wl~~ 88 (106)
T 3dpl_R 64 EECTVAWG-VCNHAFHFHCISRWLKT 88 (106)
T ss_dssp -CCCEEEE-TTSCEEEHHHHHHHHTT
T ss_pred ccceEeec-ccCcEECHHHHHHHHHc
Confidence 34555555 59999999999999754
No 117
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=62.42 E-value=4.4 Score=23.80 Aligned_cols=16 Identities=25% Similarity=0.702 Sum_probs=12.2
Q ss_pred hcCCCCCCCCcceEec
Q psy271 119 AHTKDCPKCHICIEKN 134 (191)
Q Consensus 119 ~~~k~CP~C~~~i~k~ 134 (191)
.+...||.|+..+.++
T Consensus 41 ~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 41 RGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTSSSCTTTCCCCSSC
T ss_pred cCCCcCCCCCCccccc
Confidence 3457899999998653
No 118
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=62.39 E-value=5 Score=30.18 Aligned_cols=34 Identities=21% Similarity=0.649 Sum_probs=25.4
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
..|+.|+..... ---.-.|..||.-||..|....
T Consensus 162 ~~C~~C~~~F~~--~~rrhhCr~CG~v~C~~Cs~~~ 195 (220)
T 1dvp_A 162 RVCHRCRVEFTF--TNRKHHCRNCGQVFCGQCTAKQ 195 (220)
T ss_dssp SBCTTTCCBCCS--SSCCEECTTTCCEECSTTSCEE
T ss_pred CccCCCCCccCC--cccccccCCcCCEEChHHhCCe
Confidence 579999877642 2345678889999999998754
No 119
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=62.08 E-value=7.4 Score=22.57 Aligned_cols=11 Identities=36% Similarity=0.721 Sum_probs=8.2
Q ss_pred CCCCCCCCcce
Q psy271 121 TKDCPKCHICI 131 (191)
Q Consensus 121 ~k~CP~C~~~i 131 (191)
..+||+|+..-
T Consensus 15 ~~~Cp~Cg~~~ 25 (57)
T 1qyp_A 15 KITCPKCGNDT 25 (57)
T ss_dssp ECCCTTTCCSE
T ss_pred EeECCCCCCCE
Confidence 36899999743
No 120
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=61.97 E-value=1.3 Score=28.56 Aligned_cols=35 Identities=23% Similarity=0.570 Sum_probs=22.7
Q ss_pred CCCCCCCCcceEecCCcCceE-eCCCCcceeccccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQ-CYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~-C~~C~~~fC~~C~~~~~~ 159 (191)
...||-|...+... .|. -..|+|.||..|++.+..
T Consensus 5 ~~~C~IC~~~~~~~----~~~~l~~CgH~FC~~Cl~~~~~ 40 (94)
T 1wim_A 5 SSGCKLCLGEYPVE----QMTTIAQCQCIFCTLCLKQYVE 40 (94)
T ss_dssp BCCCSSSCCCCBGG----GEEEETTTTEEEEHHHHHHHHH
T ss_pred CcCCcccCcccccc----cceEcCCCCCcccHHHHHHHHH
Confidence 34688887654321 232 235999999999988754
No 121
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=58.27 E-value=4 Score=24.34 Aligned_cols=23 Identities=26% Similarity=0.602 Sum_probs=14.5
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~ 147 (191)
+.-.||+|+.+. =.|..|..||+
T Consensus 29 ~l~~c~~cGe~~-----~~H~vc~~CG~ 51 (60)
T 3v2d_5 29 TLVPCPECKAMK-----PPHTVCPECGY 51 (60)
T ss_dssp CCEECTTTCCEE-----CTTSCCTTTCE
T ss_pred ceeECCCCCCee-----cceEEcCCCCc
Confidence 456799998876 23455555553
No 122
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=57.50 E-value=4.5 Score=24.38 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=14.4
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
-.|..|+..++...+ .-+.|..||+..
T Consensus 22 Y~C~~Cg~~~~l~~~-~~iRC~~CG~RI 48 (63)
T 3h0g_L 22 YLCADCGARNTIQAK-EVIRCRECGHRV 48 (63)
T ss_dssp CBCSSSCCBCCCCSS-SCCCCSSSCCCC
T ss_pred EECCCCCCeeecCCC-CceECCCCCcEE
Confidence 456666666655443 345565555543
No 123
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=56.00 E-value=7.5 Score=29.43 Aligned_cols=34 Identities=21% Similarity=0.647 Sum_probs=25.1
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
..|..|+...... -..-.|..||.-||..|....
T Consensus 165 ~~C~~C~~~F~~~--~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 165 EECHRCRVQFGVM--TRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECTTTCCEE
T ss_pred CCCcCcCCCCCcc--ccccccCCCcCEeChhhcCCc
Confidence 4688888766432 234678889999999998754
No 124
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=54.08 E-value=6.2 Score=23.46 Aligned_cols=23 Identities=30% Similarity=0.745 Sum_probs=15.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~ 147 (191)
+...||.|+... =.|..|..||+
T Consensus 29 ~l~~c~~cG~~~-----~pH~vc~~CG~ 51 (60)
T 2zjr_Z 29 NLTECPQCHGKK-----LSHHICPNCGY 51 (60)
T ss_dssp CCEECTTTCCEE-----CTTBCCTTTCB
T ss_pred CceECCCCCCEe-----CCceEcCCCCc
Confidence 455799998885 34566655664
No 125
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=53.15 E-value=3 Score=24.91 Aligned_cols=14 Identities=36% Similarity=0.816 Sum_probs=10.3
Q ss_pred hcCCCCCCCCcceE
Q psy271 119 AHTKDCPKCHICIE 132 (191)
Q Consensus 119 ~~~k~CP~C~~~i~ 132 (191)
...+.||+|++..-
T Consensus 4 s~mr~C~~CgvYTL 17 (60)
T 2apo_B 4 MRMKKCPKCGLYTL 17 (60)
T ss_dssp CCCEECTTTCCEES
T ss_pred hhceeCCCCCCEec
Confidence 34678999988774
No 126
>1nui_A DNA primase/helicase; zinc-biding domain, toprim fold, DNA replication, DNA-direct polymerase, primosome, late protein, ATP-binding; HET: DNA; 2.90A {Enterobacteria phage T7} SCOP: e.13.1.2 g.41.3.2
Probab=52.94 E-value=8.6 Score=29.39 Aligned_cols=23 Identities=30% Similarity=0.827 Sum_probs=14.5
Q ss_pred CCCCCCCc----ceEecCCcCceEeCCCCc
Q psy271 122 KDCPKCHI----CIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 122 k~CP~C~~----~i~k~~GC~~m~C~~C~~ 147 (191)
-+||.|+- .+- ..| +..|.+||+
T Consensus 15 ~~CP~Cg~~d~~~~~-~dg--~~~C~~Cg~ 41 (255)
T 1nui_A 15 IPCDNCGSSDGNSLF-SDG--HTFCYVCEK 41 (255)
T ss_dssp ECCSSSCCSSCEEEE-TTS--CEEETTTCC
T ss_pred CcCCCCCCCCCceEe-CCC--CeecccCCC
Confidence 48999987 333 344 466665665
No 127
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=51.01 E-value=18 Score=27.54 Aligned_cols=43 Identities=23% Similarity=0.522 Sum_probs=32.6
Q ss_pred HHHHHHHhc----CCCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 112 ETANYISAH----TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 112 ~~~~~~~~~----~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
+...|+..+ .+.|.-|+..|... ..|..|++.|=..|...|..
T Consensus 167 El~~~l~~~~~~~i~~C~iC~~iv~~g-----~~C~~C~~~~H~~C~~~~~~ 213 (238)
T 3nw0_A 167 EMEQYIRETYPDAVKICNICHSLLIQG-----QSCETCGIRMHLPCVAKYFQ 213 (238)
T ss_dssp HHHHHHHHHCTTTCCBCTTTCSBCSSC-----EECSSSCCEECHHHHHHHTT
T ss_pred HHHHHHHHhcCCCCCcCcchhhHHhCC-----cccCccChHHHHHHHHHHHH
Confidence 355677653 78999999999853 66666888888888888853
No 128
>3nyb_B Protein AIR2; polya RNA polymerase, zinc knuckle protein, RNA surveillance binds to TRF4P/AIR2P heterodimer; 2.70A {Saccharomyces cerevisiae}
Probab=50.83 E-value=9.4 Score=24.22 Aligned_cols=49 Identities=16% Similarity=0.120 Sum_probs=27.3
Q ss_pred CccccCCcccCccchHHHHHHHhhccChHHHHHHHHhcCCCCCCCCcceEecCCcCceEeCCCCcceecccccc
Q psy271 83 EPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGN 156 (191)
Q Consensus 83 ~C~~Cgv~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~ 156 (191)
.|+.|+..-|....|.+. .+|..|+..-....-|.. .=...+||.|++.
T Consensus 7 ~C~~Cg~~GH~~~~Cp~~---------------------~rcY~c~~~gh~~~~c~~----p~~~~~CYnCG~~ 55 (83)
T 3nyb_B 7 QCTLCKSKKHSKERCPSI---------------------WRAYILVDDNEKAKPKVL----PFHTIYCYNCGGK 55 (83)
T ss_dssp CCSSSCCSSSCGGGCGGG---------------------TCCCCBC-----------------CCCBCSSSSCB
T ss_pred CCCCCCCCCCccccCCCc---------------------ccccccccCCcccccccC----CCCCCeecccCCC
Confidence 489999999988888752 257777654322111211 0135789999875
No 129
>2xzf_A Formamidopyrimidine-DNA glycosylase; hydrolase-DNA complex; HET: VET; 1.80A {Lactococcus lactis subsp} PDB: 1pm5_A* 1xc8_A* 1pji_A* 2xzu_A* 3c58_A* 1tdz_A* 1nnj_A 1kfv_A 1pjj_A*
Probab=50.81 E-value=7.4 Score=30.40 Aligned_cols=14 Identities=29% Similarity=0.657 Sum_probs=12.2
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.++||.|+.+|++.
T Consensus 242 G~pC~~CG~~I~~~ 255 (271)
T 2xzf_A 242 GEKCSRCGAEIQKI 255 (271)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred CCCCCCCCCEeeEE
Confidence 47899999999984
No 130
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.53 E-value=13 Score=21.16 Aligned_cols=31 Identities=23% Similarity=0.510 Sum_probs=21.4
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
...||-|...+.. -++ ..|||.||+.|...|
T Consensus 6 ~~~C~IC~~~~~~-----p~~-l~CgH~fC~~Ci~~~ 36 (56)
T 1bor_A 6 FLRCQQCQAEAKC-----PKL-LPCLHTLCSGCLEAS 36 (56)
T ss_dssp CSSCSSSCSSCBC-----CSC-STTSCCSBTTTCSSS
T ss_pred CCCceEeCCccCC-----eEE-cCCCCcccHHHHccC
Confidence 3568888877653 222 258999999998763
No 131
>1vk6_A NADH pyrophosphatase; 1790429, structural genomics, JCSG, PS protein structure initiative, joint center for structural G hydrolase; HET: MSE; 2.20A {Escherichia coli} SCOP: d.113.1.4 d.113.1.4 g.41.14.1 PDB: 2gb5_A
Probab=50.32 E-value=26 Score=27.13 Aligned_cols=30 Identities=23% Similarity=0.399 Sum_probs=24.8
Q ss_pred hcCCCCCCCCcceEecCCcCceEeCCCCcc
Q psy271 119 AHTKDCPKCHICIEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 119 ~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~ 148 (191)
.+.+-||.|+.+.+...+=..+.|..|+..
T Consensus 105 ~~~~fC~~CG~~~~~~~~~~~~~C~~C~~~ 134 (269)
T 1vk6_A 105 RSHKYCGYCGHEMYPSKTEWAMLCSHCRER 134 (269)
T ss_dssp HTTSBCTTTCCBEEECSSSSCEEESSSSCE
T ss_pred hcCCccccCCCcCccCCCceeeeCCCCCCE
Confidence 456889999999988777778999888763
No 132
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis, ATP-binding, hydrogen ION TRA hydrolase, ION transport; 2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D 3j0j_D*
Probab=50.31 E-value=8.5 Score=32.56 Aligned_cols=32 Identities=16% Similarity=0.205 Sum_probs=26.0
Q ss_pred CCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 160 GKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 160 ~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
+..+.....+++++..+|..+.|..+.+||+|
T Consensus 102 ~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~T 133 (464)
T 3gqb_B 102 GLPPITPEKRLPITGLPLNPVARRKPEQFIQT 133 (464)
T ss_dssp SSCCCCCSEEEETTCCCBCGGGBCCCCCBCBC
T ss_pred CCccccCcceeeccCCCCChhhccCccccccC
Confidence 44455555667888899999999999999987
No 133
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=50.13 E-value=6.4 Score=25.25 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=25.5
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|...+. +-++-..|||.||..|...|..
T Consensus 8 ~~CPI~~~~~~-----dPV~~~~cGh~f~r~cI~~~l~ 40 (94)
T 2yu4_A 8 FTCPITKEEMK-----KPVKNKVCGHTYEEDAIVRMIE 40 (94)
T ss_dssp CBCTTTCSBCS-----SEEEESSSCCEEEHHHHHHHHH
T ss_pred eECcCcCchhc-----CCEEcCCCCCeecHHHHHHHHH
Confidence 35898887763 4566545999999999999875
No 134
>1ee8_A MUTM (FPG) protein; beta sandwich, zinc finger, helix two-turns helix, riken STR genomics/proteomics initiative, RSGI, structural genomics; 1.90A {Thermus thermophilus} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=49.97 E-value=8.9 Score=29.87 Aligned_cols=14 Identities=29% Similarity=0.693 Sum_probs=12.3
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.++||.|+..|++.
T Consensus 235 g~pC~~CG~~I~~~ 248 (266)
T 1ee8_A 235 GLPCPACGRPVERR 248 (266)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred CCCCCCCCCEeeEE
Confidence 47899999999984
No 135
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=49.26 E-value=3.4 Score=25.27 Aligned_cols=31 Identities=23% Similarity=0.307 Sum_probs=22.3
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcc-eeccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHE-FCWMCLGNT 157 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~-fC~~C~~~~ 157 (191)
...||-|...... -++ ..|||. ||+.|...|
T Consensus 24 ~~~C~iC~~~~~~-----~~~-~pCgH~~~C~~C~~~~ 55 (74)
T 4ic3_A 24 EKLCKICMDRNIA-----IVF-VPCGHLVTCKQCAEAV 55 (74)
T ss_dssp HTBCTTTSSSBCC-----EEE-ETTCCBCCCHHHHTTC
T ss_pred CCCCCCCCCCCCC-----EEE-cCCCChhHHHHhhhcC
Confidence 4579999876521 222 369999 999999887
No 136
>1k82_A Formamidopyrimidine-DNA glycosylase; protein-DNA complex, DNA repair, beta sandwich, zinc finger, helix two-turns helix, hydrolase/DNA complex; HET: PED; 2.10A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8
Probab=48.22 E-value=8.5 Score=30.00 Aligned_cols=14 Identities=21% Similarity=0.403 Sum_probs=12.2
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.++||.|+..|++.
T Consensus 240 g~pC~~CG~~I~~~ 253 (268)
T 1k82_A 240 GEPCRVCGTPIVAT 253 (268)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred CCCCCCCCCEeeEE
Confidence 47899999999984
No 137
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=47.50 E-value=9.8 Score=23.44 Aligned_cols=23 Identities=22% Similarity=0.684 Sum_probs=13.5
Q ss_pred CCCCCCcceEecCCcCceEeCCCCc
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~~ 147 (191)
.|| |+...--.+|=.--+|. ||.
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG~ 28 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CGR 28 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TTE
T ss_pred ECC-CCCEEEEcCCCcEEECC-CCC
Confidence 577 77776666654445553 443
No 138
>3u6p_A Formamidopyrimidine-DNA glycosylase; DNA glycosylase, DNA repair, sequence context; HET: DNA 08Q; 1.60A {Geobacillus stearothermophilus} PDB: 3u6d_A* 3u6c_A* 3u6l_A* 3u6m_A* 3u6o_A* 3u6e_A* 3u6q_A* 3u6s_A* 3gp1_A* 3sbj_A* 2f5q_A* 2f5s_A* 3gq4_A* 3gpy_A* 2f5n_A 2f5o_A 2f5p_A 3sau_A* 3sar_A* 3sav_A* ...
Probab=47.25 E-value=8.9 Score=29.97 Aligned_cols=14 Identities=36% Similarity=0.721 Sum_probs=12.1
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.++||.|+.+|+|.
T Consensus 245 g~pC~~CG~~I~~~ 258 (273)
T 3u6p_A 245 GNPCKRCGTPIEKT 258 (273)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred cCCCCCCCCeEEEE
Confidence 47999999999983
No 139
>1k3x_A Endonuclease VIII; hydrolase/DNA, hydrolase-DNA complex; HET: BRU PED; 1.25A {Escherichia coli} SCOP: a.156.1.2 b.113.1.1 g.39.1.8 PDB: 1k3w_A* 1q39_A 2ea0_A* 2oq4_A* 1q3c_A 2opf_A* 1q3b_A*
Probab=46.64 E-value=9.3 Score=29.65 Aligned_cols=14 Identities=36% Similarity=0.752 Sum_probs=12.0
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.++||.|+.+|++.
T Consensus 234 g~pC~~CG~~I~~~ 247 (262)
T 1k3x_A 234 GEPCERCGSIIEKT 247 (262)
T ss_dssp TSBCTTTCCBCEEE
T ss_pred cCCCCCCCCEeEEE
Confidence 46899999999984
No 140
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=45.70 E-value=9.9 Score=24.45 Aligned_cols=32 Identities=22% Similarity=0.532 Sum_probs=22.6
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGN 156 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~ 156 (191)
..|+-|...+... .-+.|..|++.||..|...
T Consensus 4 ~~C~~C~~~~~~~---av~~C~~C~~~~C~~Cl~~ 35 (101)
T 2jun_A 4 VLCQFCDQDPAQD---AVKTCVTCEVSYCDECLKA 35 (101)
T ss_dssp CBCTTCCSSSCCB---CCEEETTTTEEECHHHHHH
T ss_pred CCCcCCCCCCCCC---ceEECCcCChHHhHHHCHH
Confidence 3578887432111 2378889999999999987
No 141
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=45.54 E-value=11 Score=26.89 Aligned_cols=35 Identities=20% Similarity=0.433 Sum_probs=29.2
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLG 155 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~ 155 (191)
+...|..|..+.-...+. .-+|..|++.+|-.|+.
T Consensus 67 ~~~~C~~C~~~fg~l~~~-g~~C~~C~~~VC~~C~~ 101 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNS-RRQCLECSLFVCKSCSH 101 (153)
T ss_dssp GGTBCTTTCCBGGGCSSC-CEECTTTCCEECGGGEE
T ss_pred CCccchhhcCccccccCC-CCcCCCCCchhhccccc
Confidence 457899999998777777 56788899999999984
No 142
>2zkr_2 60S ribosomal protein L37E; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris} SCOP: i.1.1.1
Probab=45.35 E-value=11 Score=24.65 Aligned_cols=23 Identities=17% Similarity=0.366 Sum_probs=16.8
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~ 147 (191)
..||.|+...... ++.+|..||+
T Consensus 17 ~lCrRCG~~sfH~---qK~~CgkCGY 39 (97)
T 2zkr_2 17 TLCRRCGSKAYHL---QKSTCGKCGY 39 (97)
T ss_dssp ECCTTTCSSCEET---TSCCBTTTCT
T ss_pred CcCCCCCCccCcC---ccccCcccCC
Confidence 3799999887643 4568887776
No 143
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=45.34 E-value=10 Score=30.29 Aligned_cols=35 Identities=26% Similarity=0.608 Sum_probs=25.6
Q ss_pred CCCCCCCcce----Ee----cCCcCceEeCCCCcce------ecccccc
Q psy271 122 KDCPKCHICI----EK----NGGCNHMQCYHCKHEF------CWMCLGN 156 (191)
Q Consensus 122 k~CP~C~~~i----~k----~~GC~~m~C~~C~~~f------C~~C~~~ 156 (191)
..||-|+..= .+ .+|=.++.|+.|+++| |-.|+..
T Consensus 183 ~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 183 TLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp SSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred CCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4699999753 23 4777889999888887 5567664
No 144
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=45.06 E-value=11 Score=26.19 Aligned_cols=37 Identities=24% Similarity=0.508 Sum_probs=28.8
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceeccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~ 157 (191)
+...|..|....-..++.. -.|..|++.+|-.|+...
T Consensus 54 ~~~~C~~C~~~~g~l~~~g-~~C~~C~~~VC~~C~~~~ 90 (134)
T 1zbd_B 54 GVNRCILCGEQLGMLGSAS-VVCEDCKKNVCTKCGVET 90 (134)
T ss_dssp SSSBCSSSCCBCSTTSCCE-EECTTTCCEEETTSEEEC
T ss_pred CCccccccCCCcccccCCC-CCCCCCCcccccccCCcc
Confidence 4567999999986555555 577789999999998753
No 145
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=44.65 E-value=8.9 Score=23.49 Aligned_cols=33 Identities=21% Similarity=0.404 Sum_probs=24.2
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGN 156 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~ 156 (191)
..|..|+...... =-.-.|..||.-||..|...
T Consensus 12 ~~C~~C~~~F~~~--~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 12 DACMICSKKFSLL--NRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp SBCTTTCCBCBTT--BCCEECTTTCCEECGGGSCE
T ss_pred CcccCCCCccCCc--cccccCCCCCEEEcccccCC
Confidence 4688888766432 23467888999999999864
No 146
>1loi_A Cyclic 3',5'-AMP specific phosphodiesterase RD1; hydrolase, C-AMP phosphodiesterase; NMR {Rattus norvegicus} SCOP: j.51.1.1
Probab=44.56 E-value=3.9 Score=19.27 Aligned_cols=12 Identities=25% Similarity=0.376 Sum_probs=9.9
Q ss_pred ceeccccccccc
Q psy271 148 EFCWMCLGNTID 159 (191)
Q Consensus 148 ~fC~~C~~~~~~ 159 (191)
.||-.|.++|.-
T Consensus 6 ffcetcskpwlv 17 (26)
T 1loi_A 6 FFCETCSKPWLV 17 (26)
T ss_dssp HHHHTSSCTTGG
T ss_pred HHHHhcCCchhh
Confidence 588899999874
No 147
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Probab=44.45 E-value=15 Score=31.39 Aligned_cols=32 Identities=16% Similarity=0.129 Sum_probs=26.4
Q ss_pred CCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 160 GKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 160 ~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
+..+.....+++++..+|..+.|..+.+||.|
T Consensus 120 ~~~~i~~~~~~pi~~~~p~~~~r~~~~e~l~T 151 (498)
T 1fx0_B 120 NLRPVDTRTTSPIHRSAPAFTQLDTKLSIFET 151 (498)
T ss_dssp SSSCCCCSEEEESCCCCCCGGGCCCCCCCCCC
T ss_pred CcCCcCCCceeccccCCCchhhhccccccccc
Confidence 34445455678999999999999999999987
No 148
>1dxg_A Desulforedoxin; non-heme iron protein, rubredoxin type metal center, electron transport; 1.80A {Desulfovibrio gigas} SCOP: g.41.5.2 PDB: 1dcd_A 1dhg_A 1cfw_A 2lk5_A 2lk6_A
Probab=44.43 E-value=18 Score=18.88 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=14.2
Q ss_pred CCCCCCCcceEec-CCcCceEe
Q psy271 122 KDCPKCHICIEKN-GGCNHMQC 142 (191)
Q Consensus 122 k~CP~C~~~i~k~-~GC~~m~C 142 (191)
-.|+.|+..|+.. +|=--++|
T Consensus 7 Y~C~~CGnivev~~~g~~~l~C 28 (36)
T 1dxg_A 7 YKCELCGQVVKVLEEGGGTLVC 28 (36)
T ss_dssp EECTTTCCEEEEEECCSSCEEE
T ss_pred EEcCCCCcEEEEEeCCCcCEEe
Confidence 4799999999972 22234556
No 149
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=44.02 E-value=11 Score=28.74 Aligned_cols=32 Identities=0% Similarity=-0.192 Sum_probs=24.2
Q ss_pred CCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 123 ~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.||-|.... -+-++= .|||.||..|...|...
T Consensus 210 ~c~i~~~~~-----~dPv~~-~~gh~f~~~~i~~~~~~ 241 (281)
T 2c2l_A 210 CGKISFELM-----REPCIT-PSGITYDRKDIEEHLQR 241 (281)
T ss_dssp BCTTTCSBC-----SSEEEC-SSCCEEETTHHHHHHHH
T ss_pred CCcCcCCHh-----cCCeEC-CCCCEECHHHHHHHHHH
Confidence 588887776 334554 49999999999998754
No 150
>2lli_A Protein AIR2; RNA surveillance, RNA degradation, RNA binding, exosome, RNA protein; NMR {Saccharomyces cerevisiae}
Probab=43.48 E-value=10 Score=25.66 Aligned_cols=54 Identities=20% Similarity=0.442 Sum_probs=35.0
Q ss_pred CCCCccccCCcccCccchHHHHHHHhhccChHHHHHHHHhcCCCCCCCCcc-eEecCCcCc-eEeCCCCc----------
Q psy271 80 SVREPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHIC-IEKNGGCNH-MQCYHCKH---------- 147 (191)
Q Consensus 80 ~~~~C~~Cgv~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~-i~k~~GC~~-m~C~~C~~---------- 147 (191)
....|+.|+..-|....|.. +.|.+|+.. =-....|.. +.|++|+.
T Consensus 3 ~~~~C~~C~~~GH~~~~Cp~----------------------~~C~~Cg~~~gH~~~~C~~~~~C~~Cg~~GH~~~~C~~ 60 (124)
T 2lli_A 3 AAPKCNNCSQRGHLKKDCPH----------------------IICSYCGATDDHYSRHCPKAIQCSKCDEVGHYRSQCPH 60 (124)
T ss_dssp CSSCCSSCSSSSCCTTTTTS----------------------CCCTTTCCTTTCCTTTGGGSSCSSSSSCSSSSTTTSCC
T ss_pred CCCcccCCCCCCcCcccCcC----------------------CcCcCCCCcCCccCcccCCcccccccCCCCCccccCcC
Confidence 34568899998888878874 357777765 444445544 45655542
Q ss_pred ----ceeccccc
Q psy271 148 ----EFCWMCLG 155 (191)
Q Consensus 148 ----~fC~~C~~ 155 (191)
..||.|++
T Consensus 61 ~~~~~~C~~Cg~ 72 (124)
T 2lli_A 61 KWKKVQCTLCKS 72 (124)
T ss_dssp CCCCCSSSSSCS
T ss_pred cccCccCCCCCc
Confidence 46888765
No 151
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.72 E-value=10 Score=21.39 Aligned_cols=31 Identities=19% Similarity=0.528 Sum_probs=19.0
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceecccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTI 158 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~ 158 (191)
+.+.||+|++.+-..+- =+.+.||-|...+.
T Consensus 11 ~~~~CPrCn~~f~~~~s--------Lr~HmkycCp~~v~ 41 (49)
T 2e72_A 11 GRKICPRCNAQFRVTEA--------LRGHMCYCCPEMVE 41 (49)
T ss_dssp SCCCCTTTCCCCSSHHH--------HHHHHHHHCTTTCC
T ss_pred CceeCCcccccccchHH--------HHhhhhhcCcchhh
Confidence 46889999988743211 23345567766544
No 152
>2f9i_B Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta; zinc ribbon, crotonase superfamily, spiral domain; 1.98A {Staphylococcus aureus}
Probab=41.81 E-value=3.6 Score=32.48 Aligned_cols=31 Identities=26% Similarity=0.686 Sum_probs=23.2
Q ss_pred CCCCCCCCcceEecC-CcCceEeCCCCcceec
Q psy271 121 TKDCPKCHICIEKNG-GCNHMQCYHCKHEFCW 151 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~-GC~~m~C~~C~~~fC~ 151 (191)
|.+||+|+..+.... .=|.-.|..|++++=+
T Consensus 30 ~~kc~~~~~~~y~~~l~~~~~v~p~~~~~~r~ 61 (285)
T 2f9i_B 30 MTKCPKCKKIMYTKELAENLNVCFNCDHHIAL 61 (285)
T ss_dssp EEECTTTCCEEEHHHHHHTTTBCTTTCCBCCC
T ss_pred HHhhHhhCCccchhhhHHhcCcCCCCCCCCCC
Confidence 778999999998753 4567788878886533
No 153
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D* 1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D* 2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Probab=40.10 E-value=15 Score=31.27 Aligned_cols=33 Identities=24% Similarity=0.376 Sum_probs=27.0
Q ss_pred cCCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 159 DGKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 159 ~~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
++..+.....+++++..+|..++|..+.+||.|
T Consensus 107 Dg~~~~~~~~~~pi~~~~P~~~~r~~~~e~l~T 139 (482)
T 2ck3_D 107 DERGPIKTKQFAAIHAEAPEFVEMSVEQEILVT 139 (482)
T ss_dssp SSSCSCCCCCEEESCCCCCCGGGCCCCCCEECC
T ss_pred CCcCCCCccccccccccCCchHHhcccCcCCcc
Confidence 344455556688999999999999999999987
No 154
>3vr4_D V-type sodium ATPase subunit D; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_D* 3vr2_D* 3vr5_D 3vr6_D*
Probab=39.50 E-value=14 Score=31.34 Aligned_cols=32 Identities=13% Similarity=0.014 Sum_probs=25.3
Q ss_pred CCCCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 160 GKGPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 160 ~~~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
+..+.....+.+++..+|..+.|..+.+||+|
T Consensus 106 ~~~~i~~~~~~~i~~~~p~p~~R~~~~e~l~T 137 (465)
T 3vr4_D 106 NGPEILPEKYLDINGEVINPIARDYPDEFIQT 137 (465)
T ss_dssp CCCCCCCSEEEESSCCCBCTTTEECCCCBCBC
T ss_pred CCCCCcccceeeccCcccCchhccCccccccc
Confidence 34444445567888889999999999999987
No 155
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=39.47 E-value=9 Score=22.79 Aligned_cols=13 Identities=31% Similarity=0.751 Sum_probs=9.6
Q ss_pred cCCCCCCCCcceE
Q psy271 120 HTKDCPKCHICIE 132 (191)
Q Consensus 120 ~~k~CP~C~~~i~ 132 (191)
..+.||+|+...-
T Consensus 4 ~mr~C~~Cg~YTL 16 (60)
T 2aus_D 4 RIRKCPKCGRYTL 16 (60)
T ss_dssp CCEECTTTCCEES
T ss_pred cceECCCCCCEEc
Confidence 4578999887774
No 156
>1x4v_A Hypothetical protein LOC130617; ZF-AN1 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.35 E-value=16 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.746 Sum_probs=19.6
Q ss_pred CCCCCC--CCcceEecCCcCceEeCCCCcceecc
Q psy271 121 TKDCPK--CHICIEKNGGCNHMQCYHCKHEFCWM 152 (191)
Q Consensus 121 ~k~CP~--C~~~i~k~~GC~~m~C~~C~~~fC~~ 152 (191)
.++|.. |+... . .-+.|..|+..||-.
T Consensus 12 ~~~Cs~~~Ck~~~-l----l~f~C~~C~~~FC~~ 40 (63)
T 1x4v_A 12 TNKCERAGCRQRE-M----MKLTCERCSRNFCIK 40 (63)
T ss_dssp CCCCCSTTCCCCC-S----SCCBCSSSCCBCCHH
T ss_pred CCCCCccCCCCCC-c----cceECCCCCcccCcc
Confidence 567886 88762 1 357897799999974
No 157
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=37.46 E-value=13 Score=28.99 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=27.7
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
.-.||-|...+ -+-++-..|||.||-.|...|...
T Consensus 181 el~CPIcl~~f-----~DPVts~~CGHsFcR~cI~~~~~~ 215 (267)
T 3htk_C 181 ELTCPITCKPY-----EAPLISRKCNHVFDRDGIQNYLQG 215 (267)
T ss_dssp CSBCTTTSSBC-----SSEEEESSSCCEEEHHHHHHHSTT
T ss_pred eeECcCccCcc-----cCCeeeCCCCCcccHHHHHHHHHh
Confidence 45799999888 455776579999999999888653
No 158
>3cc2_Z 50S ribosomal protein L37AE, 50S ribosomal protein L32E; genomic sequnece for R-proteins, ribonucleoprotein, ribosoma protein, RNA-binding; HET: 1MA OMU OMG UR3 PSU; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 3cc4_Z* 3cc7_Z* 3cce_Z* 3ccj_Z* 3ccl_Z* 3ccm_Z* 3ccq_Z* 3ccr_Z* 3ccs_Z* 3ccu_Z* 3ccv_Z* 3cd6_Z* 3cma_Z* 3cme_Z* 3i55_Z* 3i56_Z* 3cpw_Y* 4adx_Z
Probab=37.21 E-value=19 Score=24.35 Aligned_cols=30 Identities=27% Similarity=0.575 Sum_probs=19.3
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|-.+=---.|..|++.|
T Consensus 59 akytCPfCGk~~vKR~avGIW~C~~Cgk~f 88 (116)
T 3cc2_Z 59 EDHACPNCGEDRVDRQGTGIWQCSYCDYKF 88 (116)
T ss_dssp SCEECSSSCCEEEEEEETTEEEETTTCCEE
T ss_pred cCCcCCCCCCceeEecCceeEECCCCCCEE
Confidence 345899999865554443355677666655
No 159
>1nee_A EIF-2-beta, probable translation initiation factor 2 beta subunit; two domain protein, mixed alpha-beta structure; NMR {Methanothermobacterthermautotrophicus} SCOP: d.241.1.1 g.59.1.1
Probab=37.19 E-value=17 Score=25.46 Aligned_cols=26 Identities=23% Similarity=0.597 Sum_probs=20.8
Q ss_pred CCCCCCcc---eEecCCcCceEeCCCCcc
Q psy271 123 DCPKCHIC---IEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 123 ~CP~C~~~---i~k~~GC~~m~C~~C~~~ 148 (191)
.||.|+.+ +.|.++=..+.|..||+.
T Consensus 104 lC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 132 (138)
T 1nee_A 104 ICHECNRPDTRIIREGRISLLKCEACGAK 132 (138)
T ss_dssp HHTCCSSCSSCCEEETTTTEEECSTTSCC
T ss_pred ECCCCCCcCcEEEEcCCeEEEEccCCCCC
Confidence 59999875 567788888999878764
No 160
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=36.96 E-value=17 Score=30.75 Aligned_cols=30 Identities=17% Similarity=0.166 Sum_probs=24.6
Q ss_pred CCCCCC-CCcccCccCCCccccCCCCCCCCC
Q psy271 162 GPLKTT-TRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 162 ~~~~~~-~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
++.... .+++++..+|..++|..+.+||.|
T Consensus 107 g~i~~~~~~~pi~~~~p~~~~r~~~~e~l~T 137 (473)
T 1sky_E 107 GDIPADARRDPIHRPAPKFEELATEVEILET 137 (473)
T ss_dssp CCCCTTSCEEESCCCCCCGGGBCCSCCEECC
T ss_pred cccCCCceeecccccCcchhhhcccCccccc
Confidence 344333 578999999999999999999987
No 161
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase, A1AO, ATP synthesis, hydrogen ION transport, ION transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A* 3b2q_A* 2rkw_A* 3eiu_A*
Probab=36.01 E-value=22 Score=30.15 Aligned_cols=30 Identities=10% Similarity=0.098 Sum_probs=23.5
Q ss_pred CCCCCCCCcccCccCCCccccCCCCCCCCC
Q psy271 162 GPLKTTTRFRVGIKAPGIIPRISVREPMQS 191 (191)
Q Consensus 162 ~~~~~~~~~~~~~~a~~i~~r~~~~~~~~~ 191 (191)
.+-....+++++..+|..+.|..+.+||.|
T Consensus 109 ~~i~~~~~~~i~~~~p~p~~R~~~~e~l~T 138 (469)
T 2c61_A 109 PRIVPDQLLDINGAAMNPYARLPPKDFIQT 138 (469)
T ss_dssp CCCCCSEEEESSSCSSCCBCSCCCCSBCBC
T ss_pred CCCCccccccccCccCCcccccccccccce
Confidence 343344466778889999999999999987
No 162
>3jyw_9 60S ribosomal protein L43; eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus}
Probab=35.96 E-value=33 Score=21.12 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|..+---=.|..|+..|
T Consensus 25 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 54 (72)
T 3jyw_9 25 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 54 (72)
T ss_dssp SCBCCSSCCSSCBSBCSSSCBCCSSSCCCC
T ss_pred cCccCCCCCCceeEecCCCeEECCCCCCEE
Confidence 456899999887776654444666566544
No 163
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.44 E-value=9.7 Score=21.86 Aligned_cols=11 Identities=18% Similarity=0.498 Sum_probs=8.7
Q ss_pred cCCCCCCCCcc
Q psy271 120 HTKDCPKCHIC 130 (191)
Q Consensus 120 ~~k~CP~C~~~ 130 (191)
+-+.||+|+..
T Consensus 13 ~k~iCpkC~a~ 23 (51)
T 3j21_g 13 KKYVCLRCGAT 23 (51)
T ss_dssp SEEECTTTCCE
T ss_pred CCccCCCCCCc
Confidence 45679999887
No 164
>3j21_i 50S ribosomal protein L37AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=35.34 E-value=37 Score=21.50 Aligned_cols=30 Identities=27% Similarity=0.525 Sum_probs=21.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|..+----.|..|+..|
T Consensus 34 ~ky~CpfCGk~~vkR~a~GIW~C~kCg~~~ 63 (83)
T 3j21_i 34 QKHTCPVCGRKAVKRISTGIWQCQKCGATF 63 (83)
T ss_dssp SCBCCSSSCSSCEEEEETTEEEETTTCCEE
T ss_pred cccCCCCCCCceeEecCcCeEEcCCCCCEE
Confidence 356899999887776554455677676655
No 165
>2k5r_A Uncharacterized protein XF2673; solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Xylella fastidiosa TEMECULA1}
Probab=34.91 E-value=18 Score=23.64 Aligned_cols=14 Identities=7% Similarity=-0.126 Sum_probs=9.3
Q ss_pred CCCCCCCCcceEec
Q psy271 121 TKDCPKCHICIEKN 134 (191)
Q Consensus 121 ~k~CP~C~~~i~k~ 134 (191)
.-.||.|+.+.+..
T Consensus 8 ILaCP~cK~pL~l~ 21 (97)
T 2k5r_A 8 LLCSPDTRQPLSLL 21 (97)
T ss_dssp SCCCCTTSSCCEEC
T ss_pred heECCCCCCccccc
Confidence 34688888776653
No 166
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=33.61 E-value=8.8 Score=31.62 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=0.0
Q ss_pred HHH-hcCCCCCCCCcceEecCCcCceEeCCCCcceecccccc
Q psy271 116 YIS-AHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGN 156 (191)
Q Consensus 116 ~~~-~~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~ 156 (191)
|+. .....|+.|+....... ..-.|..||.-||..|...
T Consensus 369 w~~~~~~~~c~~c~~~f~~~~--r~h~Cr~Cg~~~C~~Cs~~ 408 (434)
T 3mpx_A 369 LVPVTHVMMCMNCGCDFSLTL--RRHHCHACGKIVCRNCSRN 408 (434)
T ss_dssp ------------------------------------------
T ss_pred CCCcccCCcCCCcCCCCCCcc--hhhhcccCcCEeehhhCCC
Confidence 443 23567999998775322 2356878999999999764
No 167
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger domain, metal binding protein; NMR {Rattus norvegicus} PDB: 2cjs_C
Probab=31.79 E-value=18 Score=21.40 Aligned_cols=36 Identities=33% Similarity=0.827 Sum_probs=26.3
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcceecccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTI 158 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~ 158 (191)
.-.|+-|..- .-.+|+-|. |.-|+..||-.||..+.
T Consensus 9 ~~~C~iC~KT-KFADG~Gh~-C~yCk~r~CaRCGg~v~ 44 (62)
T 2a20_A 9 APTCGICHKT-KFADGCGHN-CSYCQTKFCARCGGRVS 44 (62)
T ss_dssp CCCCSSSSCS-CCCSSCCEE-BTTTCCEECTTSEEEEE
T ss_pred cchhhhhccc-eeccCCCcc-ccccCCeeecccCCEee
Confidence 3467777542 236888885 54699999999999875
No 168
>4a17_Y RPL37A, 60S ribosomal protein L32; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_Y 4a1c_Y 4a1e_Y
Probab=31.73 E-value=27 Score=23.10 Aligned_cols=30 Identities=23% Similarity=0.484 Sum_probs=21.1
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|..+----.|..|+..|
T Consensus 35 aky~CpfCgk~~vKR~a~GIW~C~kCg~~~ 64 (103)
T 4a17_Y 35 AKYGCPFCGKVAVKRAAVGIWKCKPCKKII 64 (103)
T ss_dssp SCEECTTTCCEEEEEEETTEEEETTTTEEE
T ss_pred cCCCCCCCCCceeeecCcceEEcCCCCCEE
Confidence 345899999887776554455677676655
No 169
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=31.52 E-value=9.5 Score=23.62 Aligned_cols=32 Identities=19% Similarity=0.296 Sum_probs=20.2
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcc-eecccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHE-FCWMCLGNTI 158 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~-fC~~C~~~~~ 158 (191)
...|+-|...... +.-.-|||. ||+.|...|.
T Consensus 18 ~~~C~IC~~~~~~------~v~~pCgH~~~C~~C~~~~~ 50 (79)
T 2yho_A 18 AMLCMVCCEEEIN------STFCPCGHTVCCESCAAQLQ 50 (79)
T ss_dssp HTBCTTTSSSBCC------EEEETTCBCCBCHHHHTTCS
T ss_pred CCEeEEeCcccCc------EEEECCCCHHHHHHHHHhcC
Confidence 4579999765421 222257887 8888877664
No 170
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=30.73 E-value=23 Score=28.44 Aligned_cols=27 Identities=22% Similarity=0.562 Sum_probs=16.6
Q ss_pred CCCCCCCCcc---eEecCCcCceEeCCCCc
Q psy271 121 TKDCPKCHIC---IEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 121 ~k~CP~C~~~---i~k~~GC~~m~C~~C~~ 147 (191)
...||.|+.. +.....=-.+.|..||.
T Consensus 21 ~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~ 50 (345)
T 3k7a_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (345)
T ss_dssp CCCCSTTCCSCCCCCCCSSSCSCCCSSSCC
T ss_pred CCcCcCCCCCCCceEEECCCCCEecCCCCe
Confidence 5689999883 54433223567775554
No 171
>3u50_C Telomerase-associated protein 82; TEB1, processivity factor, DNA BIND protein; 2.50A {Tetrahymena thermophila}
Probab=30.67 E-value=27 Score=25.28 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=16.1
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~ 148 (191)
..||+|+..+...++ ....|.+|+..
T Consensus 43 ~ACp~CnKKV~~~~~-g~~~CekC~~~ 68 (172)
T 3u50_C 43 YRCTCQGKSVLKYHG-DSFFCESCQQF 68 (172)
T ss_dssp EECTTSCCCEEEETT-TEEEETTTTEE
T ss_pred hhchhhCCEeeeCCC-CeEECCCCCCC
Confidence 469999999974322 24455555543
No 172
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=30.51 E-value=22 Score=21.90 Aligned_cols=36 Identities=19% Similarity=0.464 Sum_probs=28.2
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
....|.-|+..|.. -..|..|++.|=..|...|...
T Consensus 14 ~i~~C~IC~~~i~~-----g~~C~~C~h~fH~~Ci~kWl~~ 49 (74)
T 2ct0_A 14 AVKICNICHSLLIQ-----GQSCETCGIRMHLPCVAKYFQS 49 (74)
T ss_dssp SSCBCSSSCCBCSS-----SEECSSSCCEECHHHHHHHSTT
T ss_pred CCCcCcchhhHccc-----CCccCCCCchhhHHHHHHHHHh
Confidence 35789999999973 2567689999989999988754
No 173
>2d74_B Translation initiation factor 2 beta subunit; protein complex; 2.80A {Pyrococcus furiosus} PDB: 2dcu_B*
Probab=30.11 E-value=22 Score=25.18 Aligned_cols=28 Identities=29% Similarity=0.532 Sum_probs=21.0
Q ss_pred CCCCCCCcc---eEecCCcCceEeCCCCcce
Q psy271 122 KDCPKCHIC---IEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 122 k~CP~C~~~---i~k~~GC~~m~C~~C~~~f 149 (191)
-.||.|+.+ +.|.++=..+.|..||+..
T Consensus 105 VlC~~C~sPdT~L~k~~r~~~l~C~ACGa~~ 135 (148)
T 2d74_B 105 VICPVCGSPDTKIIKRDRFHFLKCEACGAET 135 (148)
T ss_dssp SSCSSSCCTTCCCCBSSSSBCCCCSSSCCCC
T ss_pred EECCCCCCcCcEEEEeCCEEEEEecCCCCCc
Confidence 579999976 5667777788898677653
No 174
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=29.70 E-value=15 Score=24.70 Aligned_cols=9 Identities=44% Similarity=0.792 Sum_probs=6.2
Q ss_pred CCCCCCcce
Q psy271 123 DCPKCHICI 131 (191)
Q Consensus 123 ~CP~C~~~i 131 (191)
.||.|+...
T Consensus 92 ~CP~Cgs~~ 100 (119)
T 2kdx_A 92 VCEKCHSKN 100 (119)
T ss_dssp CCSSSSSCC
T ss_pred cCccccCCC
Confidence 677777663
No 175
>1ffk_W Ribosomal protein L37AE; ribosome assembly, RNA-RNA, protein-RNA, protein-protein; 2.40A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1jj2_Y 1k73_1* 1k8a_1* 1k9m_1* 1kc8_1* 1kd1_1* 1kqs_Y* 1m1k_1* 1m90_1* 1n8r_1* 1nji_1* 1q7y_1* 1q81_1* 1q82_1* 1q86_1* 1qvf_Y 1qvg_Y 1w2b_Y 3cxc_Y*
Probab=29.18 E-value=35 Score=21.01 Aligned_cols=30 Identities=23% Similarity=0.485 Sum_probs=18.3
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
....||.|+..-.|-.+=---.|..|+..|
T Consensus 26 ~ky~C~fCgk~~vkR~a~GIW~C~~C~~~~ 55 (73)
T 1ffk_W 26 KKYKCPVCGFPKLKRASTSIWVCGHCGYKI 55 (73)
T ss_pred cCccCCCCCCceeEEEEeEEEECCCCCcEE
Confidence 346899999866554443344566555544
No 176
>1wjv_A Cell growth regulating nucleolar protein LYAR; DNA-binding protein, C2H2 type zinc-finger, structural genomics; NMR {Mus musculus} SCOP: g.37.1.2 g.37.1.2
Probab=28.71 E-value=29 Score=21.74 Aligned_cols=26 Identities=27% Similarity=0.869 Sum_probs=14.8
Q ss_pred CCCCCcceEec---------CCcCceEeCCCCcce
Q psy271 124 CPKCHICIEKN---------GGCNHMQCYHCKHEF 149 (191)
Q Consensus 124 CP~C~~~i~k~---------~GC~~m~C~~C~~~f 149 (191)
|-.|+-.+.|. .||...+|..|+..|
T Consensus 13 C~~Cgd~lKK~kv~~H~~~Cr~~~~~SCIDC~~~F 47 (79)
T 1wjv_A 13 CNACGESVKKIQVEKHVSNCRNCECLSCIDCGKDF 47 (79)
T ss_dssp ESSSCCEEETTHHHHHHHHCTTCCEEEETTTTEEE
T ss_pred cCCCCCeeecccchhHHhhCCCCCcEEecccCCee
Confidence 55566555552 355666776555555
No 177
>3iz5_m 60S ribosomal protein L43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_m 1ysh_D 2zkr_z
Probab=28.50 E-value=49 Score=21.35 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=21.0
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|..+---=.|..|+..|
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~Cg~~~ 64 (92)
T 3iz5_m 35 SKYFCEFCGKFAVKRKAVGIWGCKDCGKVK 64 (92)
T ss_dssp SCBCCTTTCSSCBEEEETTEEECSSSCCEE
T ss_pred ccccCcccCCCeeEecCcceEEcCCCCCEE
Confidence 346899999887776554445677676655
No 178
>1lv3_A Hypothetical protein YACG; zinc finger, rubredoxin knuckle, C4 tetrahedral Zn+2, antiparallel beta strand and alpha helix, NESG project; NMR {Escherichia coli} SCOP: g.39.1.9
Probab=28.28 E-value=14 Score=22.53 Aligned_cols=13 Identities=31% Similarity=0.736 Sum_probs=10.8
Q ss_pred cCCCCCCCCcceE
Q psy271 120 HTKDCPKCHICIE 132 (191)
Q Consensus 120 ~~k~CP~C~~~i~ 132 (191)
..+.||.|+.+++
T Consensus 8 ~~~~CP~Cgkp~~ 20 (68)
T 1lv3_A 8 ITVNCPTCGKTVV 20 (68)
T ss_dssp CEEECTTTCCEEE
T ss_pred CcCcCCCCCCccc
Confidence 3578999999997
No 179
>3po3_S Transcription elongation factor S-II; RNA polymerase II, mRNA, transcription, arrest, BACKTRACKING cleavage, transferase-DNA-RNA complex; HET: DNA BRU EPE PGE; 3.30A {Saccharomyces cerevisiae} PDB: 1y1v_S 1y1y_S 3gtm_S* 1enw_A
Probab=28.24 E-value=44 Score=24.24 Aligned_cols=9 Identities=33% Similarity=0.608 Sum_probs=6.8
Q ss_pred CCCCCCCcc
Q psy271 122 KDCPKCHIC 130 (191)
Q Consensus 122 k~CP~C~~~ 130 (191)
.+||+|+..
T Consensus 138 ~~Cp~C~~~ 146 (178)
T 3po3_S 138 FTCGKCKEK 146 (178)
T ss_dssp SCCSSSCCS
T ss_pred cCCCCCCCC
Confidence 479999853
No 180
>2i5o_A DNA polymerase ETA; zinc finger, DNA polymerase,POL ETA, UBZ, ubiquitin-binding zinc finger, translesion synthesis, ubiquitin-binding domain; HET: DNA; NMR {Homo sapiens}
Probab=27.26 E-value=25 Score=18.85 Aligned_cols=12 Identities=25% Similarity=0.589 Sum_probs=9.5
Q ss_pred CCCCCCCCcceE
Q psy271 121 TKDCPKCHICIE 132 (191)
Q Consensus 121 ~k~CP~C~~~i~ 132 (191)
...||+|+..|.
T Consensus 9 ~~~C~~C~~~i~ 20 (39)
T 2i5o_A 9 QVPCEKCGSLVP 20 (39)
T ss_dssp EEECTTTCCEEE
T ss_pred CcccccccCcCC
Confidence 357999998875
No 181
>2e9h_A EIF-5, eukaryotic translation initiation factor 5; zinc binding, C4 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.10 E-value=80 Score=22.46 Aligned_cols=33 Identities=18% Similarity=0.388 Sum_probs=22.2
Q ss_pred HHHHhcCCCCCCCCcc---eEe--cCCcCceEeCCCCcc
Q psy271 115 NYISAHTKDCPKCHIC---IEK--NGGCNHMQCYHCKHE 148 (191)
Q Consensus 115 ~~~~~~~k~CP~C~~~---i~k--~~GC~~m~C~~C~~~ 148 (191)
.|++. --.||.|+.+ +.+ ..+=..+.|..||+.
T Consensus 98 ~yI~~-YVlC~~C~sPdT~L~~~~~~r~~~l~C~ACGa~ 135 (157)
T 2e9h_A 98 GFIKK-FVLCPECENPETDLHVNPKKQTIGNSCKACGYR 135 (157)
T ss_dssp HHHHH-TTSCTTTCCSCCEEEEETTTTEEEEECSSSCCE
T ss_pred HHHHH-eEECCCCCCCccEEEEecCCCEEEEEccCCCCC
Confidence 34433 3569999976 455 567777889867764
No 182
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=26.91 E-value=63 Score=19.46 Aligned_cols=33 Identities=18% Similarity=0.372 Sum_probs=19.1
Q ss_pred CCCCCCcceEe-cCCcCceEeCCCCcceeccccc
Q psy271 123 DCPKCHICIEK-NGGCNHMQCYHCKHEFCWMCLG 155 (191)
Q Consensus 123 ~CP~C~~~i~k-~~GC~~m~C~~C~~~fC~~C~~ 155 (191)
+||.|...-.- +--=.-+.|..|+.-.|--=|+
T Consensus 9 KCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGG 42 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGG 42 (66)
T ss_dssp ECTTTCCEEEEESSCSSCEECSSSCCEEEECCSS
T ss_pred ECCCCCCceEEEecCceEEEcccCCCEEeecCCc
Confidence 58888654332 4444456777677666654443
No 183
>3w0f_A Endonuclease 8-like 3; helix two turns helix, zinc finger, DNA binding, hydrolase; 2.00A {Mus musculus}
Probab=26.81 E-value=37 Score=26.73 Aligned_cols=29 Identities=28% Similarity=0.490 Sum_probs=19.5
Q ss_pred CCCCCCCcceEecC-CcCceEeCCCCcceeccccc
Q psy271 122 KDCPKCHICIEKNG-GCNHMQCYHCKHEFCWMCLG 155 (191)
Q Consensus 122 k~CP~C~~~i~k~~-GC~~m~C~~C~~~fC~~C~~ 155 (191)
++||.|+..|++.. |= .+=.++||-.|-+
T Consensus 252 ~pC~~CGt~I~~~~~g~-----~gRsTyfCp~~~~ 281 (287)
T 3w0f_A 252 PNCDQCHSKITVCRFGE-----NSRMTYFCPHCQK 281 (287)
T ss_dssp SBCTTTCCBCEEECSST-----TCCCEEECTTTSC
T ss_pred CCCCCCCCEEEEEEecC-----CCCCEEECCCccc
Confidence 59999999999832 20 1245677778854
No 184
>2pp6_A Gifsy-2 prophage ATP-binding sugar transporter-LI protein; beta barrel, 4 helix bundle, structural genomics, PSI-2; 2.70A {Salmonella typhimurium LT2} SCOP: b.106.1.2
Probab=26.62 E-value=65 Score=21.15 Aligned_cols=33 Identities=30% Similarity=0.439 Sum_probs=24.8
Q ss_pred ecCCeEEEEEecCCCCCCCCCeEEecCCccccc
Q psy271 5 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVP 37 (191)
Q Consensus 5 l~~~~~~~~~~~~~~gi~~G~~v~~~g~~~~v~ 37 (191)
++++...|..|++...-+.|+.|...|+...|.
T Consensus 48 lsG~~rsLvvFSsgYrP~r~D~Vv~~Gk~y~Vt 80 (102)
T 2pp6_A 48 VEGNGKNVVVFSGNVIPRRGDRVVLRGSEFTVT 80 (102)
T ss_dssp ----CEEEEECCSSCCCCTTCEEEETTEEEEEE
T ss_pred ccCCceEEEEecCCcccCCCCEEEEcCcEEEEE
Confidence 677889999998888888999999999877654
No 185
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=26.59 E-value=37 Score=19.66 Aligned_cols=13 Identities=31% Similarity=0.682 Sum_probs=10.8
Q ss_pred CCCCCCCCcceEe
Q psy271 121 TKDCPKCHICIEK 133 (191)
Q Consensus 121 ~k~CP~C~~~i~k 133 (191)
.+.||-|+..|++
T Consensus 44 ~~~CPiCR~~i~~ 56 (63)
T 2vje_B 44 GASCPICKKEIQL 56 (63)
T ss_dssp TCBCTTTCCBCCE
T ss_pred CCcCCCcCchhhc
Confidence 3789999999864
No 186
>3cw2_K Translation initiation factor 2 subunit beta; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2nxu_A 2qmu_C* 3v11_C*
Probab=25.95 E-value=19 Score=25.18 Aligned_cols=27 Identities=19% Similarity=0.556 Sum_probs=17.8
Q ss_pred CCCCCCCcc---eEecCCcCceEeCCCCcc
Q psy271 122 KDCPKCHIC---IEKNGGCNHMQCYHCKHE 148 (191)
Q Consensus 122 k~CP~C~~~---i~k~~GC~~m~C~~C~~~ 148 (191)
-.||.|+.+ +.|.++=..+.|..||+.
T Consensus 104 VlC~~C~sPdT~l~k~~r~~~l~C~ACGa~ 133 (139)
T 3cw2_K 104 VECSTCKSLDTILKKEKKSWYIVCLACGAQ 133 (139)
T ss_dssp SSCCSSSSSCCCSCSSCSTTTSSCCC----
T ss_pred eECCCCCCcCcEEEEeCCeEEEEecCCCCC
Confidence 469999976 456677778889877754
No 187
>3izc_m 60S ribosomal protein RPL43 (L37AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_m 3o58_g 3o5h_g 3u5e_p 3u5i_p 4b6a_p 1s1i_9
Probab=25.47 E-value=55 Score=21.11 Aligned_cols=30 Identities=27% Similarity=0.499 Sum_probs=20.3
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcce
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~f 149 (191)
.-..||.|+..-.|..+----.|..|+..|
T Consensus 35 ~ky~CpfCgk~~vkR~a~GIW~C~~C~~~~ 64 (92)
T 3izc_m 35 ARYDCSFCGKKTVKRGAAGIWTCSCCKKTV 64 (92)
T ss_dssp SCCCCSSSCSSCCEEEETTEEECTTTCCEE
T ss_pred cCCcCCCCCCceeeecccceEEcCCCCCEE
Confidence 456899999877666554445677666654
No 188
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=24.94 E-value=36 Score=21.08 Aligned_cols=19 Identities=21% Similarity=0.467 Sum_probs=12.4
Q ss_pred HHHHh-cCCCCCCCCcceEe
Q psy271 115 NYISA-HTKDCPKCHICIEK 133 (191)
Q Consensus 115 ~~~~~-~~k~CP~C~~~i~k 133 (191)
.|++. +...||-|+..+..
T Consensus 51 ~Wl~~~~~~~CplCr~~~~~ 70 (80)
T 2d8s_A 51 QWIKSSDTRCCELCKYEFIM 70 (80)
T ss_dssp HHHHHHCCSBCSSSCCBCCC
T ss_pred HHHhhCCCCCCCCCCCeeec
Confidence 34443 34689999988753
No 189
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=24.38 E-value=49 Score=19.19 Aligned_cols=13 Identities=38% Similarity=0.815 Sum_probs=10.7
Q ss_pred CCCCCCCCcceEe
Q psy271 121 TKDCPKCHICIEK 133 (191)
Q Consensus 121 ~k~CP~C~~~i~k 133 (191)
.+.||-|+..|+.
T Consensus 45 ~~~CPiCR~~i~~ 57 (64)
T 2vje_A 45 NKPCPVCRQPIQM 57 (64)
T ss_dssp TCCCTTTCCCCCE
T ss_pred CCcCCCcCcchhc
Confidence 4689999999864
No 190
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.29 E-value=73 Score=18.99 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=19.7
Q ss_pred CCCCCCcceEe-cCCcCceEeCCCCcceeccccc
Q psy271 123 DCPKCHICIEK-NGGCNHMQCYHCKHEFCWMCLG 155 (191)
Q Consensus 123 ~CP~C~~~i~k-~~GC~~m~C~~C~~~fC~~C~~ 155 (191)
+||.|...-.- +.-=.-+.|..|++-.|--=|.
T Consensus 17 kCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGG 50 (63)
T 3j20_W 17 KCIDCGNEQIVFSHPATKVRCLICGATLVEPTGG 50 (63)
T ss_dssp ECSSSCCEEEEESSCSSCEECSSSCCEEEECCSS
T ss_pred ECCCCCCeeEEEecCCeEEEccCcCCEEecCCCC
Confidence 68888654332 3444457777777776654443
No 191
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=24.11 E-value=32 Score=22.81 Aligned_cols=9 Identities=44% Similarity=1.051 Sum_probs=6.0
Q ss_pred EeCCCCcce
Q psy271 141 QCYHCKHEF 149 (191)
Q Consensus 141 ~C~~C~~~f 149 (191)
.|..||+.|
T Consensus 69 ~C~~CG~~F 77 (105)
T 2gmg_A 69 QCRKCGFVF 77 (105)
T ss_dssp BBTTTCCBC
T ss_pred ChhhCcCee
Confidence 355677777
No 192
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=23.75 E-value=28 Score=21.67 Aligned_cols=32 Identities=3% Similarity=-0.118 Sum_probs=23.6
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceeccccccccc
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~ 159 (191)
-.||-|..... +-++= .||+.||..|...|..
T Consensus 15 ~~CpI~~~~m~-----dPV~~-~cGhtf~r~~I~~~l~ 46 (85)
T 2kr4_A 15 FRDPLMDTLMT-----DPVRL-PSGTVMDRSIILRHLL 46 (85)
T ss_dssp TBCTTTCSBCS-----SEEEC-TTSCEEEHHHHHHHHH
T ss_pred eECcccCchhc-----CCeEC-CCCCEECHHHHHHHHh
Confidence 35888876652 33444 4999999999999875
No 193
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=23.64 E-value=53 Score=24.06 Aligned_cols=27 Identities=22% Similarity=0.534 Sum_probs=16.1
Q ss_pred CCCCCCCCc---ceEecCCcCceEeCCCCc
Q psy271 121 TKDCPKCHI---CIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 121 ~k~CP~C~~---~i~k~~GC~~m~C~~C~~ 147 (191)
...||.|+. .|.....=--+.|..||.
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGL 50 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGL 50 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCC
Confidence 347999997 244432223577776654
No 194
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=22.99 E-value=46 Score=26.86 Aligned_cols=32 Identities=19% Similarity=0.373 Sum_probs=22.4
Q ss_pred cCCCCCCCCcceEecCCcCceEeCCCCcc-eeccccccc
Q psy271 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHE-FCWMCLGNT 157 (191)
Q Consensus 120 ~~k~CP~C~~~i~k~~GC~~m~C~~C~~~-fC~~C~~~~ 157 (191)
....||-|..... +-++= .|||. ||+.|...|
T Consensus 294 ~~~~C~IC~~~~~-----~~v~l-pCgH~~fC~~C~~~~ 326 (345)
T 3t6p_A 294 EERTCKVCMDKEV-----SVVFI-PCGHLVVCQECAPSL 326 (345)
T ss_dssp TTCBCTTTSSSBC-----CEEEE-TTCCEEECTTTGGGC
T ss_pred CCCCCCccCCcCC-----ceEEc-CCCChhHhHHHHhcC
Confidence 3467999987662 22233 58888 899998877
No 195
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=22.81 E-value=35 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.179 Sum_probs=8.2
Q ss_pred cCCCCCCCCcce
Q psy271 120 HTKDCPKCHICI 131 (191)
Q Consensus 120 ~~k~CP~C~~~i 131 (191)
....|++|+..+
T Consensus 9 ~~~~Cw~C~~~~ 20 (207)
T 3bvo_A 9 NYPRCWNCGGPW 20 (207)
T ss_dssp --CBCSSSCCBC
T ss_pred CCCCCCCCCCCc
Confidence 457899999764
No 196
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=22.35 E-value=54 Score=18.97 Aligned_cols=20 Identities=10% Similarity=0.524 Sum_probs=13.2
Q ss_pred HHHHHHh-cCCCCCCCCcceE
Q psy271 113 TANYISA-HTKDCPKCHICIE 132 (191)
Q Consensus 113 ~~~~~~~-~~k~CP~C~~~i~ 132 (191)
+..|+.. +...||-|+..+.
T Consensus 38 l~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 38 LSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp HHHHHHHHTCSBCTTTCCBCC
T ss_pred HHHHHHhCCCCccCCCCCeee
Confidence 3456653 4578999988763
No 197
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.35 E-value=18 Score=21.83 Aligned_cols=31 Identities=23% Similarity=0.343 Sum_probs=20.3
Q ss_pred CCCCCCCCcceEecCCcCceEeCCCCcc-eeccccccc
Q psy271 121 TKDCPKCHICIEKNGGCNHMQCYHCKHE-FCWMCLGNT 157 (191)
Q Consensus 121 ~k~CP~C~~~i~k~~GC~~m~C~~C~~~-fC~~C~~~~ 157 (191)
...||-|...... +.-..|||. ||+.|....
T Consensus 25 ~~~C~IC~~~~~~------~~~~pCgH~~~C~~C~~~~ 56 (75)
T 2ecg_A 25 EKLCKICMDRNIA------IVFVPCGHLVTCKQCAEAV 56 (75)
T ss_dssp HHSCSSSCSSCCC------BCCSSSCCCCBCHHHHHHC
T ss_pred CCCCCcCCCCCCC------EEEecCCCHHHHHHHhhCC
Confidence 3479999766422 222368888 999997643
No 198
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=22.33 E-value=37 Score=19.04 Aligned_cols=13 Identities=31% Similarity=0.531 Sum_probs=10.3
Q ss_pred cCCCCCCCCcceE
Q psy271 120 HTKDCPKCHICIE 132 (191)
Q Consensus 120 ~~k~CP~C~~~i~ 132 (191)
...+||-|+..|.
T Consensus 22 P~IrCpyCGyrii 34 (48)
T 4ayb_P 22 PGVRCPYCGYKII 34 (48)
T ss_dssp SSSCCTTTCCSCE
T ss_pred CCcccCccCcEEE
Confidence 3678999998774
No 199
>1wys_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, NPPSFA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus}
Probab=21.90 E-value=79 Score=19.49 Aligned_cols=28 Identities=21% Similarity=0.513 Sum_probs=19.5
Q ss_pred CCCCCC--CCcceEecCCcCceEeCCCCcceeccc
Q psy271 121 TKDCPK--CHICIEKNGGCNHMQCYHCKHEFCWMC 153 (191)
Q Consensus 121 ~k~CP~--C~~~i~k~~GC~~m~C~~C~~~fC~~C 153 (191)
.++|-. |+.. +=.-+.|..|+..||-.=
T Consensus 14 g~~Cs~~~C~~~-----dflpf~C~~C~~~FC~~H 43 (75)
T 1wys_A 14 GQHCQVQHCRQR-----DFLPFVCDGCSGIFCLEH 43 (75)
T ss_dssp CCCCSCTTTCCC-----SCCCEECTTTCCEECSTT
T ss_pred CCCcCcccCCCc-----cceeeECcccCcCcCccc
Confidence 456765 7666 224689978999999753
No 200
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=21.72 E-value=80 Score=20.71 Aligned_cols=64 Identities=22% Similarity=0.459 Sum_probs=37.1
Q ss_pred CccccCCcccCccchHHHHHHHhhccChHHHHHHHHhcCCCCCCCCcceE-ecCC---cCceEeCCCCcceeccccccc
Q psy271 83 EPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHICIE-KNGG---CNHMQCYHCKHEFCWMCLGNT 157 (191)
Q Consensus 83 ~C~~Cgv~~H~~~~C~~~~~~~~~~~~~~~~~~~~~~~~k~CP~C~~~i~-k~~G---C~~m~C~~C~~~fC~~C~~~~ 157 (191)
.|..|+..+|. +|-... ....+.+....=.||.|+.-.. ...| =.-+.|..|...|=..|+.+-
T Consensus 28 ~C~~C~~~~H~--~Cl~~~---------~~~~~~~~~~~W~C~~C~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~ 95 (112)
T 3v43_A 28 SCADCGNSGHP--SCLKFS---------PELTVRVKALRWQCIECKTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPP 95 (112)
T ss_dssp ECTTTCCEECH--HHHTCC---------HHHHHHHHTSCCCCTTTCCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSC
T ss_pred EhhhcCCCCCC--chhcCC---------HHHHHHhhccccccccCCccccccCcCCCccceEEcCCCCCeeecccCCCC
Confidence 49999999998 675421 1112223333335887752221 1112 245778888888888888754
No 201
>1l1o_C Replication protein A 70 kDa DNA-binding subunit; eukaryotic SSB, ssDNA binding protein, OB-fold; 2.80A {Homo sapiens} SCOP: b.40.4.3
Probab=21.68 E-value=59 Score=23.42 Aligned_cols=25 Identities=20% Similarity=0.668 Sum_probs=15.0
Q ss_pred CCCCC--CCcceEecCCcCceEeCCCCc
Q psy271 122 KDCPK--CHICIEKNGGCNHMQCYHCKH 147 (191)
Q Consensus 122 k~CP~--C~~~i~k~~GC~~m~C~~C~~ 147 (191)
..||+ |+..+...++ ....|.+|+.
T Consensus 44 ~aC~~~~CnKKv~~~~~-g~~~CekC~~ 70 (181)
T 1l1o_C 44 QACPTQDCNKKVIDQQN-GLYRCEKCDT 70 (181)
T ss_dssp EBCCSTTCCCBCEEETT-TEEEETTTTE
T ss_pred CCCCchhcCCccccCCC-CeEECCCCCC
Confidence 46998 9988876332 1345555543
No 202
>2g2k_A EIF-5, eukaryotic translation initiation factor 5; EIF125 fold; NMR {Homo sapiens}
Probab=21.38 E-value=57 Score=23.58 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=20.2
Q ss_pred CCCCCCCcc---eEe--cCCcCceEeCCCCcce
Q psy271 122 KDCPKCHIC---IEK--NGGCNHMQCYHCKHEF 149 (191)
Q Consensus 122 k~CP~C~~~---i~k--~~GC~~m~C~~C~~~f 149 (191)
-.||.|+.+ +.+ ..+=..+.|..||+.-
T Consensus 97 VlC~~C~sPdT~L~k~~~~r~~~l~C~ACGa~~ 129 (170)
T 2g2k_A 97 VLCPECENPETDLHVNPKKQTIGNSCKACGYRG 129 (170)
T ss_dssp HSCTTTSSSCEEEEEETTTTEEEEEETTTCCCC
T ss_pred EECCCCCCCccEEEEecCCCEEEEEccccCCcc
Confidence 469999976 556 5677778898676543
No 203
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=21.38 E-value=35 Score=24.10 Aligned_cols=13 Identities=23% Similarity=0.526 Sum_probs=10.3
Q ss_pred CCCCCCCcceEec
Q psy271 122 KDCPKCHICIEKN 134 (191)
Q Consensus 122 k~CP~C~~~i~k~ 134 (191)
..||.|+..+.|.
T Consensus 149 ~~Cp~CG~~~~~~ 161 (165)
T 2lcq_A 149 GVCPDCGSKVKLI 161 (165)
T ss_dssp GBCTTTCCBEEEC
T ss_pred CcCCCCCCcceeC
Confidence 4799999988764
No 204
>1wfe_A Riken cDNA 2310008M20 protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.80.1.1
Probab=20.86 E-value=36 Score=21.63 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=20.1
Q ss_pred CCCCCC--CCcceEecCCcCceEeCCCCcceeccc
Q psy271 121 TKDCPK--CHICIEKNGGCNHMQCYHCKHEFCWMC 153 (191)
Q Consensus 121 ~k~CP~--C~~~i~k~~GC~~m~C~~C~~~fC~~C 153 (191)
..+|.. |+.... .-+.|..|+..||-.=
T Consensus 25 ~~~C~~~~Ck~~~~-----l~f~C~~C~~~FC~~H 54 (86)
T 1wfe_A 25 SYSCSFKGCTDVEL-----VAVICPYCEKNFCLRH 54 (86)
T ss_dssp CEECCSTTCCCEES-----SCEECTTTCCEECGGG
T ss_pred CCCCCCcCCCCCCc-----cceECCCCCccccccc
Confidence 346776 877631 5679978999999753
No 205
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=20.43 E-value=35 Score=22.04 Aligned_cols=33 Identities=3% Similarity=-0.122 Sum_probs=24.1
Q ss_pred CCCCCCCcceEecCCcCceEeCCCCcceecccccccccC
Q psy271 122 KDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDG 160 (191)
Q Consensus 122 k~CP~C~~~i~k~~GC~~m~C~~C~~~fC~~C~~~~~~~ 160 (191)
-.||-|.... =+-++= .||+.||..|...|...
T Consensus 30 ~~CpI~~~~m-----~dPV~~-~cGhtf~r~~I~~~l~~ 62 (100)
T 2kre_A 30 FRDPLMDTLM-----TDPVRL-PSGTIMDRSIILRHLLN 62 (100)
T ss_dssp TBCTTTCSBC-----SSEEEE-TTTEEEEHHHHHHHTTS
T ss_pred hCCcCccCcc-----cCCeEC-CCCCEEchHHHHHHHHc
Confidence 3588887665 234444 49999999999999763
No 206
>2k5c_A Uncharacterized protein PF0385; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pyrococcus furiosus}
Probab=20.26 E-value=50 Score=20.86 Aligned_cols=21 Identities=14% Similarity=0.293 Sum_probs=13.6
Q ss_pred HHHHHHHHhcCCCCCCCCcce
Q psy271 111 SETANYISAHTKDCPKCHICI 131 (191)
Q Consensus 111 ~~~~~~~~~~~k~CP~C~~~i 131 (191)
..+.+-+...+-.||+|+.-.
T Consensus 41 ~~Fl~~~e~F~FkCP~CgEEF 61 (95)
T 2k5c_A 41 ERFLAQVEEFVFKCPVCGEEF 61 (95)
T ss_dssp HHHHHHHHHSEEECTTTCCEE
T ss_pred HHHHHHHHHHhhcCCCccHHH
Confidence 344455556777899987643
No 207
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=20.16 E-value=31 Score=20.36 Aligned_cols=26 Identities=15% Similarity=0.464 Sum_probs=15.3
Q ss_pred ceEeCCCCcceec-ccccccccCCCCC
Q psy271 139 HMQCYHCKHEFCW-MCLGNTIDGKGPL 164 (191)
Q Consensus 139 ~m~C~~C~~~fC~-~C~~~~~~~~~~~ 164 (191)
+-+|.+|+..||- .|-+.-++..+.|
T Consensus 26 kY~CPrC~~rYCSl~C~k~Hk~Cse~F 52 (59)
T 1x4s_A 26 RYTCPRCNAPYCSLRCYRTHGTCAENF 52 (59)
T ss_dssp CEECTTTCCEESSHHHHHHHCCGGGGT
T ss_pred cccCcCCCCCccChHHHHHHhHhCHHH
Confidence 4567777777777 4665544333333
Done!