RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy271
(191 letters)
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP
ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A*
1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A*
2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Length = 510
Score = 175 bits (447), Expect = 3e-53
Identities = 77/89 (86%), Positives = 84/89 (94%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPL 60
M+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE+LLGRVVDALGN IDGKGP+
Sbjct: 62 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNAIDGKGPI 121
Query: 61 KTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+ R RVG+KAPGIIPRISVREPMQ+GI
Sbjct: 122 GSKARRRVGLKAPGIIPRISVREPMQTGI 150
Score = 68.9 bits (169), Expect = 3e-14
Identities = 29/37 (78%), Positives = 32/37 (86%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
LGN IDGKGP+ + R RVG+KAPGIIPRISVREPMQ
Sbjct: 111 LGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQ 147
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase,
hydrolase-transport PROT complex; HET: ANP ADP; 3.26A
{Escherichia coli DH1} PDB: 2a7u_A
Length = 513
Score = 175 bits (447), Expect = 4e-53
Identities = 48/89 (53%), Positives = 58/89 (65%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPL 60
+ALNLE D+VG VV G + EG VK TG I++VPVG LLGRVV+ LG IDGKGPL
Sbjct: 62 IALNLERDSVGAVVMGPYADLAEGMKVKCTGRILEVPVGRGLLGRVVNTLGAPIDGKGPL 121
Query: 61 KTTTRFRVGIKAPGIIPRISVREPMQSGI 89
V APG+I R SV +P+Q+G
Sbjct: 122 DHDGFSAVEAIAPGVIERQSVDQPVQTGY 150
Score = 68.8 bits (169), Expect = 4e-14
Identities = 19/37 (51%), Positives = 22/37 (59%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
LG IDGKGPL V APG+I R SV +P+Q
Sbjct: 111 LGAPIDGKGPLDHDGFSAVEAIAPGVIERQSVDQPVQ 147
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for
structural genomics, JCSG, protein structure initiative
ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima
MSB8}
Length = 515
Score = 174 bits (443), Expect = 2e-52
Identities = 46/89 (51%), Positives = 62/89 (69%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPL 60
+A NLE DNVG+++ G + IKEG V+R I++VPVGE+LLGRVV+ LG +DGKGP+
Sbjct: 75 VAFNLEEDNVGIIILGEYKDIKEGHTVRRLKRIIEVPVGEELLGRVVNPLGEPLDGKGPI 134
Query: 61 KTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+ IKAPG+I R V P+Q+GI
Sbjct: 135 NAKNFRPIEIKAPGVIYRKPVDTPLQTGI 163
Score = 68.1 bits (167), Expect = 6e-14
Identities = 17/37 (45%), Positives = 22/37 (59%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
LG +DGKGP+ + IKAPG+I R V P+Q
Sbjct: 124 LGEPLDGKGPINAKNFRPIEIKAPGVIYRKPVDTPLQ 160
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Length = 507
Score = 174 bits (442), Expect = 2e-52
Identities = 43/89 (48%), Positives = 60/89 (67%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPL 60
+ALNLE +NVGVV+ G+ +I+EG VK TG I +PV E LGRV++AL IDG+G +
Sbjct: 63 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRIAQIPVSEAYLGRVINALAKPIDGRGEI 122
Query: 61 KTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+ + APGI+ R SV EP+Q+G+
Sbjct: 123 TASESRLIESPAPGIMSRRSVYEPLQTGL 151
Score = 67.7 bits (166), Expect = 8e-14
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
L IDG+G + + + APGI+ R SV EP+Q
Sbjct: 112 LAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQ 148
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase,
single analysis, thermoalkaliphilic, hydrolase; 3.06A
{Bacillus SP} PDB: 1sky_B
Length = 502
Score = 172 bits (439), Expect = 5e-52
Identities = 50/89 (56%), Positives = 64/89 (71%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPL 60
MA NLE DNVGVV+ G I+EG VKRTG I++VPVGE LLGRVV+ LG +DG+GP+
Sbjct: 62 MAQNLEEDNVGVVILGPYTEIREGTQVKRTGRIMEVPVGEALLGRVVNPLGQPLDGRGPI 121
Query: 61 KTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+T + APG++ R SV EP+Q+GI
Sbjct: 122 ETAEYRPIESPAPGVMDRKSVHEPLQTGI 150
Score = 67.3 bits (165), Expect = 1e-13
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
LG +DG+GP++T + APG++ R SV EP+Q
Sbjct: 111 LGQPLDGRGPIETAEYRPIESPAPGVMDRKSVHEPLQ 147
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase;
NMR {Homo sapiens} SCOP: g.44.1.1
Length = 60
Score = 79.4 bits (196), Expect = 2e-20
Identities = 28/42 (66%), Positives = 36/42 (85%), Gaps = 2/42 (4%)
Query: 116 YISAHTKDCPKCHICIEKNGGCNHMQC--YHCKHEFCWMCLG 155
+I+A+TK+CPKCH+ IEK+GGCNHM C +CK EFCW+CLG
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 42
>2c61_A A-type ATP synthase non-catalytic subunit B; hydrolase, H+ ATPase,
A1AO, ATP synthesis, hydrogen ION transport, ION
transport; 1.5A {Methanosarcina mazei GO1} PDB: 3dsr_A*
3b2q_A* 2rkw_A* 3eiu_A*
Length = 469
Score = 73.2 bits (180), Expect = 1e-15
Identities = 23/87 (26%), Positives = 37/87 (42%)
Query: 3 LNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKT 62
L+ D V V VF + + V TG + +P DLLGR++ G DG +
Sbjct: 54 LDSSADIVVVQVFEGTGGLDKDCGVIFTGETLKLPASVDLLGRILSGSGEPRDGGPRIVP 113
Query: 63 TTRFRVGIKAPGIIPRISVREPMQSGI 89
+ A R+ ++ +Q+GI
Sbjct: 114 DQLLDINGAAMNPYARLPPKDFIQTGI 140
Score = 28.9 bits (65), Expect = 1.2
Identities = 6/37 (16%), Positives = 12/37 (32%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
G DG + + A R+ ++ +Q
Sbjct: 101 SGEPRDGGPRIVPDQLLDINGAAMNPYARLPPKDFIQ 137
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 70.9 bits (174), Expect = 6e-15
Identities = 17/83 (20%), Positives = 33/83 (39%), Gaps = 1/83 (1%)
Query: 8 DNVGVVVFGNDRLIKEGD-IVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRF 66
+ + VF + V + + V +++LGR + +G IDG P+ R
Sbjct: 53 EYAVIQVFEETTGLDLATTSVSLVEDVARLGVSKEMLGRRFNGIGKPIDGLPPITPEKRL 112
Query: 67 RVGIKAPGIIPRISVREPMQSGI 89
+ + R + +Q+GI
Sbjct: 113 PITGLPLNPVARRKPEQFIQTGI 135
Score = 30.1 bits (68), Expect = 0.47
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
+G IDG P+ R + + R + +Q
Sbjct: 96 IGKPIDGLPPITPEKRLPITGLPLNPVARRKPEQFIQ 132
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 65.8 bits (161), Expect = 4e-13
Identities = 18/92 (19%), Positives = 31/92 (33%), Gaps = 7/92 (7%)
Query: 5 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVD-------VPVGEDLLGRVVDALGNTIDGK 57
+ ++ I G V D +P+G LLGRV+D G +DG
Sbjct: 54 FNGQRLFLMPLEEVEGILPGARVYARNGHGDGLQSGKQLPLGPALLGRVLDGGGKPLDGL 113
Query: 58 GPLKTTTRFRVGIKAPGIIPRISVREPMQSGI 89
T + + R + + +G+
Sbjct: 114 PAPDTLETGALITPPFNPLQRTPIEHVLDTGV 145
Score = 30.8 bits (70), Expect = 0.26
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPM 189
G +DG T + + R + +
Sbjct: 106 GGKPLDGLPAPDTLETGALITPPFNPLQRTPIEHVL 141
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB:
2obm_A*
Length = 347
Score = 59.2 bits (144), Expect = 6e-11
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 36 VPVGEDLLGRVVDALGNTIDGKGPLKTTTRFR-VGIKAPGIIPRISVREPMQSGI 89
+ VG+ LLGR++D +G ++ R + + P + R + +P G+
Sbjct: 5 IRVGDALLGRLIDGIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPFILGV 59
Score = 26.8 bits (60), Expect = 4.9
Identities = 5/38 (13%), Positives = 13/38 (34%), Gaps = 1/38 (2%)
Query: 153 CLGNTIDGKGPLKTTTRFR-VGIKAPGIIPRISVREPM 189
+G ++ R + + P + R + +P
Sbjct: 18 GIGRPMESNIVAPYLPFERSLYAEPPDPLLRQVIDQPF 55
>2ck3_D ATP synthase subunit beta\, mitochondrial; hydrolase; HET: ANP ADP;
1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB:
1cow_D* 1bmf_D* 1e1q_D* 1e1r_D* 1efr_D* 1e79_D* 1h8h_D*
1ohh_D* 1qo1_D 1w0j_D* 1w0k_D* 1h8e_D* 2jdi_D* 2jiz_D*
2jj1_D* 2jj2_D* 2v7q_D* 2wss_D* 2w6j_D 2w6e_D ...
Length = 482
Score = 56.5 bits (137), Expect = 6e-10
Identities = 22/66 (33%), Positives = 38/66 (57%)
Query: 24 GDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVRE 83
G V +GA + +PVG + LGR+++ +G ID +GP+KT + +AP + +E
Sbjct: 76 GQKVLDSGAPIRIPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQE 135
Query: 84 PMQSGI 89
+ +GI
Sbjct: 136 ILVTGI 141
Score = 27.2 bits (61), Expect = 3.5
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAP 177
+G ID +GP+KT + +AP
Sbjct: 102 IGEPIDERGPIKTKQFAAIHAEAP 125
>1fx0_B ATP synthase beta chain; latent ATPase, thermal stability,
potential tentoxin binding hydrolase; 3.20A {Spinacia
oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_B*
Length = 498
Score = 55.4 bits (134), Expect = 1e-09
Identities = 22/66 (33%), Positives = 31/66 (46%)
Query: 24 GDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVRE 83
G V TGA + VPVG LGR+ + LG +D P+ T T + AP +
Sbjct: 88 GMEVIDTGAPLSVPVGGPTLGRIFNVLGEPVDNLRPVDTRTTSPIHRSAPAFTQLDTKLS 147
Query: 84 PMQSGI 89
++GI
Sbjct: 148 IFETGI 153
Score = 26.5 bits (59), Expect = 6.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAP 177
LG +D P+ T T + AP
Sbjct: 114 LGEPVDNLRPVDTRTTSPIHRSAP 137
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC
F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1
b.49.1.1 c.37.1.11
Length = 473
Score = 53.5 bits (129), Expect = 6e-09
Identities = 26/68 (38%), Positives = 35/68 (51%), Gaps = 3/68 (4%)
Query: 24 GDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGI--KAPGIIPRISV 81
G V TGA + VPVG+ LGRV + LG ID +G + R R I AP +
Sbjct: 73 GMEVIDTGAPISVPVGQVTLGRVFNVLGEPIDLEGDIPADAR-RDPIHRPAPKFEELATE 131
Query: 82 REPMQSGI 89
E +++GI
Sbjct: 132 VEILETGI 139
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop,
phenylalanine mutant, hydrolase; 2.35A {Pyrococcus
horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A
3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A
3sdz_A
Length = 588
Score = 40.5 bits (95), Expect = 2e-04
Identities = 14/51 (27%), Positives = 25/51 (49%)
Query: 5 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTID 55
LE D + V+ ++ G+ V TGA + V +G LL + D + ++
Sbjct: 43 LEGDKAVIQVYEETAGVRPGEPVVGTGASLSVELGPRLLTSIYDGIQRPLE 93
Score = 35.5 bits (82), Expect = 0.008
Identities = 20/92 (21%), Positives = 35/92 (38%), Gaps = 12/92 (13%)
Query: 9 NVGVVVFGNDRL--IKEGDIVK--------RTGAIVDV-PVGEDLLGRVVDALGNTIDGK 57
VG V G D + + E I+ G IV++ G+ + V+ +
Sbjct: 125 KVGDKVVGGDIIGEVPETSIIVHKIMVPPGIEGEIVEIAEEGDYTIEEVIAKVKTPSGEI 184
Query: 58 GPLKTTTRFRVGIKAPGIIPRISVREPMQSGI 89
LK R+ V +K P ++ P+ +G
Sbjct: 185 KELKMYQRWPVRVKRP-YKEKLPPEVPLITGQ 215
>3gqb_A V-type ATP synthase alpha chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_A* 3a5d_A
3j0j_A* 1um2_C
Length = 578
Score = 36.2 bits (84), Expect = 0.005
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 5 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTID 55
L+ D V V+ + +K G+ V TG + V +G +L + D + ++
Sbjct: 42 LDGDTAFVQVYEDTSGLKVGEPVVSTGLPLAVELGPGMLNGIYDGIQRPLE 92
Score = 33.5 bits (77), Expect = 0.034
Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 14/82 (17%)
Query: 21 IKEGDI---VKRTGAIVDVPVGEDLLGRVVDALGN----------TIDGKGPLKTTTRFR 67
++ G + V G + V D+ GRV + ++ LK +
Sbjct: 129 VRGGMVLGTVPEFGFTHKILVPPDVRGRVKEVKPAGEYTVEEPVVVLEDGTELKMYHTWP 188
Query: 68 VGIKAPGIIPRISVREPMQSGI 89
V P + ++ P +G+
Sbjct: 189 VRRARP-VQRKLDPNTPFLTGM 209
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 33.3 bits (76), Expect = 0.008
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 127 CHICIEKNGGCNHMQCYHCKHEFCWMCL 154
C +C+ + C+ FC +CL
Sbjct: 8 CKLCLGEYPVEQMTTIAQCQCIFCTLCL 35
>2ct7_A Ring finger protein 31; IBR, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: g.44.1.4
Length = 86
Score = 32.3 bits (73), Expect = 0.021
Identities = 7/30 (23%), Positives = 8/30 (26%)
Query: 124 CPKCHICIEKNGGCNHMQCYHCKHEFCWMC 153
C +C C C FC C
Sbjct: 28 CAQCSFGFIYEREQLEATCPQCHQTFCVRC 57
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 32.6 bits (74), Expect = 0.022
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
+C IC+EK + C HC C+ C+
Sbjct: 24 RCFICMEKL--RDARLCPHCSKLCCFSCI 50
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 30.6 bits (69), Expect = 0.053
Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
Query: 118 SAHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159
+A + P+C IC++ C H CKH FC++C+
Sbjct: 9 TAPSLTVPECAICLQT---CVHPVSLPCKHVFCYLCVKGASW 47
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 32.8 bits (74), Expect = 0.060
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGP 163
C IC E + ++ C H C CL + + +G
Sbjct: 334 LCKICAEND---KDVKIEPCGHLMCTSCLTSWQESEGQ 368
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex,
hydrolase-transcription regulator-Pro binding complex,
acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae}
PDB: 3mhh_A 3m99_A
Length = 476
Score = 31.9 bits (72), Expect = 0.11
Identities = 11/28 (39%), Positives = 11/28 (39%), Gaps = 1/28 (3%)
Query: 124 CPKCHICIEKNGGCNHMQCYHCKHEFCW 151
KC C E N G M C C CW
Sbjct: 48 TMKCGTCHEINSGATFM-CLQCGFCGCW 74
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 29.5 bits (66), Expect = 0.13
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 108 ADDSETANYISAHTKDCPKCHICI-EKNGGCNHMQCYHCKHEFCWMCL 154
+ S + T CP C E + C H FC CL
Sbjct: 2 SSGSSGTGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 49
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 29.3 bits (66), Expect = 0.16
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 2/32 (6%)
Query: 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
+C IC+E N+ C H FC++C+
Sbjct: 4 VAERCPICLEDPS--NYSMALPCLHAFCYVCI 33
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring
domain, structural GE consortium, SGC; 2.39A {Homo
sapiens} PDB: 2asq_B
Length = 360
Score = 31.1 bits (69), Expect = 0.19
Identities = 25/155 (16%), Positives = 53/155 (34%), Gaps = 15/155 (9%)
Query: 9 NVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRV 68
+ G K G KR G +++ L+ R+ A+ N I + + +
Sbjct: 108 GKLFPLPGYAPPPKNGIEQKRPGRPLNI---TSLV-RLSSAVPNQISISWASEIGKNYSM 163
Query: 69 GIKAPGIIPRISVREPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCH 128
+ + + + ++ + A+IK+ LT D + CP
Sbjct: 164 SVYLVRQLTSAMLLQRLKMKGIRNPDHSRALIKEKLTADPDSEIATTSLRVSLM-CPLGK 222
Query: 129 ICIE---KNGGCNHMQCY-------HCKHEFCWMC 153
+ + + C H+QC+ + + W+C
Sbjct: 223 MRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWIC 257
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 29.1 bits (64), Expect = 0.49
Identities = 12/60 (20%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 106 KCADDSETANYISAHTKDCPKCHICIEKNG--GCNHMQCYHCKHEFCWMCLGNTIDGKGP 163
D + +C +C E+ G G + C CK C C T + +
Sbjct: 37 GRLVDRLETMRKNVAGDGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRPH 96
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain,
leukemia, apoptosis, chromati regulator, DNA-binding,
isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A*
3lqj_A* 2kyu_A
Length = 183
Score = 29.6 bits (65), Expect = 0.53
Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 124 CPKCHICIEKNGGCNHM-QCYHCKHEFCWMCLGNTID 159
CP C C + + + M QC C C + +
Sbjct: 5 CPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDE 41
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 27.4 bits (61), Expect = 0.57
Identities = 10/33 (30%), Positives = 11/33 (33%), Gaps = 4/33 (12%)
Query: 126 KCHIC----IEKNGGCNHMQCYHCKHEFCWMCL 154
C IC E + C H FC CL
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 37
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 29.3 bits (65), Expect = 0.64
Identities = 10/65 (15%), Positives = 16/65 (24%), Gaps = 11/65 (16%)
Query: 99 VIKKWLTKCADDSETAN---------YISAHTKDCPKCHICIEKNGGCNHMQCYHCKHEF 149
V KWL + + + C+IC + C C
Sbjct: 146 VQNKWLIEKEGEFTLHGRAILEMEQYIRETYPDAVKICNIC--HSLLIQGQSCETCGIRM 203
Query: 150 CWMCL 154
C+
Sbjct: 204 HLPCV 208
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 27.5 bits (61), Expect = 0.76
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 4/33 (12%)
Query: 126 KCHICIE----KNGGCNHMQCYHCKHEFCWMCL 154
C IC++ + C H FC CL
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCL 44
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 1.5
Identities = 6/25 (24%), Positives = 15/25 (60%), Gaps = 5/25 (20%)
Query: 80 SVREPMQSGIEYHAPTDCA---VIK 101
++++ +Q+ ++ +A D A IK
Sbjct: 21 ALKK-LQASLKLYAD-DSAPALAIK 43
Score = 27.6 bits (60), Expect = 1.8
Identities = 10/23 (43%), Positives = 11/23 (47%), Gaps = 3/23 (13%)
Query: 100 IKKW---LTKCADDSETANYISA 119
+KK L ADDS A I A
Sbjct: 22 LKKLQASLKLYADDSAPALAIKA 44
Score = 27.2 bits (59), Expect = 2.3
Identities = 7/36 (19%), Positives = 16/36 (44%), Gaps = 9/36 (25%)
Query: 57 KGPLKTTTRFRVGIK--APGIIPRISVREPMQSGIE 90
K LK + + +K A P +++ ++ +E
Sbjct: 19 KQALK---KLQASLKLYADDSAPALAI----KATME 47
Score = 27.2 bits (59), Expect = 2.5
Identities = 7/32 (21%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 161 KGPLKTTTRFRVGIK--APGIIPRISVREPMQ 190
K LK + + +K A P ++++ M+
Sbjct: 19 KQALK---KLQASLKLYADDSAPALAIKATME 47
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 27.1 bits (59), Expect = 1.5
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 126 KCHICIEKNGGCNHMQCYHC-KHEFCWMCLGNTIDGKGP 163
C IC E+ + +QC H+FC+ C +I +G
Sbjct: 17 CCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGA 55
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural
genomics, PSI-2, protein structure initiative; NMR
{Salmonella typhimurium LT2}
Length = 81
Score = 26.9 bits (59), Expect = 1.6
Identities = 10/26 (38%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 124 CPKCHICIEKNGGCNHMQCYHCKHEF 149
CP CH +E+NG C C +F
Sbjct: 5 CPVCHHALERNGD--TAHCETCAKDF 28
>2a20_A Regulating synaptic membrane exocytosis protein 2; zinc-finger
domain, metal binding protein; NMR {Rattus norvegicus}
PDB: 2cjs_C
Length = 62
Score = 26.3 bits (57), Expect = 1.7
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 118 SAHTKDCPKCHICIEKN--GGCNHMQCYHCKHEFCWMCLGNT 157
D P C IC + GC H C +C+ +FC C G
Sbjct: 3 QEQKGDAPTCGICHKTKFADGCGHN-CSYCQTKFCARCGGRV 43
>2imr_A Hypothetical protein DR_0824; zinc, NYSGXRC, PSI2, structural
genomics, protein structure initiative; 1.78A
{Deinococcus radiodurans} SCOP: b.92.1.11 c.1.9.16
Length = 420
Score = 28.1 bits (63), Expect = 1.8
Identities = 7/48 (14%), Positives = 14/48 (29%), Gaps = 3/48 (6%)
Query: 11 GVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDALGNTIDGKG 58
V+ G G +V + ++L + A + G
Sbjct: 44 DVLYTGMGGAQSPGGVVVVGETVAAAGHPDELRRQYPHA---AEERAG 88
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 27.7 bits (61), Expect = 1.8
Identities = 10/36 (27%), Positives = 14/36 (38%), Gaps = 3/36 (8%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161
+C IC E +C H FC C+ + K
Sbjct: 66 QCIICSEY---FIEAVTLNCAHSFCSYCINEWMKRK 98
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.3 bits (62), Expect = 2.0
Identities = 8/73 (10%), Positives = 19/73 (26%), Gaps = 6/73 (8%)
Query: 90 EYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHI-CIEKNGGCNHMQCYHC--- 145
+ C KC + + +++ C C C + +
Sbjct: 267 KNSRRQGCHQYVIHNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTS 326
Query: 146 --KHEFCWMCLGN 156
+ C + G+
Sbjct: 327 AQELRGCTVINGS 339
Score = 27.2 bits (59), Expect = 4.0
Identities = 10/46 (21%), Positives = 13/46 (28%), Gaps = 4/46 (8%)
Query: 110 DSETANYISAHTKDC----PKCHICIEKNGGCNHMQCYHCKHEFCW 151
DS N+I + D C + C E CW
Sbjct: 138 DSVEDNHIVLNKDDNEECGDICPGTAKGKTNCPATVINGQFVERCW 183
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 26.0 bits (57), Expect = 2.7
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 125 PKCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
C+IC + C C C+
Sbjct: 16 KICNIC--HSLLIQGQSCETCGIRMHLPCV 43
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 27.2 bits (59), Expect = 2.7
Identities = 7/30 (23%), Positives = 8/30 (26%), Gaps = 1/30 (3%)
Query: 124 CPKCHICIEKNGGCNHMQCYHCKHEFCWMC 153
C +C QC C C C
Sbjct: 71 CARCLQPYRLLLNSRR-QCLECSLFVCKSC 99
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural
genomics, PSI-2, protein structure initiative; NMR
{Escherichia coli} SCOP: g.41.18.1
Length = 101
Score = 26.5 bits (58), Expect = 2.8
Identities = 7/26 (26%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 124 CPKCHICIEKNGGCNHMQCYHCKHEF 149
CP+C ++++ G H +C C
Sbjct: 35 CPQCQHVLDQDNG--HARCRSCGEFI 58
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module,
phosphoinositide binding, caspase regulation, metal
binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1
g.50.1.1
Length = 120
Score = 26.6 bits (58), Expect = 2.9
Identities = 15/71 (21%), Positives = 21/71 (29%), Gaps = 1/71 (1%)
Query: 121 TKDCPKCHICIEKNGGCNH-MQCYHCKHEFCWMCLGNTIDGKGPLKTTTRFRVGIKAPGI 179
T P C C C CK FC C +G RFR
Sbjct: 16 TGLEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFRATAFQREE 75
Query: 180 IPRISVREPMQ 190
+ ++ V++
Sbjct: 76 LMKMKVKDLRD 86
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 81
Score = 26.0 bits (57), Expect = 3.3
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 3/29 (10%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
+C IC + + C+H FC C
Sbjct: 17 RCFICRQA---FQNPVVTKCRHYFCESCA 42
>3tav_A Methionine aminopeptidase; ssgcid, seattle structural genomics
center for infectious DI protease, hydrolase; 2.15A
{Mycobacterium abscessus}
Length = 286
Score = 26.8 bits (60), Expect = 4.1
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 13/42 (30%)
Query: 12 VVVFG---NDRLIKEGDIVK-RTGAIVD---------VPVGE 40
VV G ++ +GD+V GAI+D VG
Sbjct: 104 QVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGT 145
>2ii0_A SOS-1, SON of sevenless homolog 1; signaling protein; 2.02A {Homo
sapiens} SCOP: a.117.1.1 PDB: 1xd2_C* 1nvv_S* 1nvu_S*
1nvw_S* 1nvx_S* 1bkd_S
Length = 490
Score = 27.0 bits (59), Expect = 4.4
Identities = 5/56 (8%), Positives = 13/56 (23%)
Query: 97 CAVIKKWLTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWM 152
V + W+ D E Y+ ++ + + +
Sbjct: 131 LNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKIARD 186
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 25.5 bits (56), Expect = 5.0
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKG 162
+C IC E M C H +C +C+ + K
Sbjct: 24 RCGICFEYFNIA--MIIPQCSHNYCSLCIRKFLSYKT 58
>1xgs_A Methionine aminopeptidase; hyperthermophIle; 1.75A {Pyrococcus
furiosus} SCOP: a.4.5.25 d.127.1.1 PDB: 1xgm_A 1xgn_A
1xgo_A 1wkm_A 2dfi_A
Length = 295
Score = 26.5 bits (59), Expect = 5.4
Identities = 14/48 (29%), Positives = 23/48 (47%), Gaps = 13/48 (27%)
Query: 16 GNDRLIKEGDIVK-RTGAIVD---------VPVG---EDLLGRVVDAL 50
G+ ++KEGD +K G +D V VG ++L+ +AL
Sbjct: 68 GDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAKEAL 115
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 25.9 bits (56), Expect = 5.8
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 4/40 (10%)
Query: 126 KCHICIEK----NGGCNHMQCYHCKHEFCWMCLGNTIDGK 161
C IC++ + C H FC CL +++
Sbjct: 9 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNA 48
>1o0x_A Methionine aminopeptidase; TM1478, structural genomics, JCSG, PSI,
protein structure initiative, joint center for
structural genomics; 1.90A {Thermotoga maritima} SCOP:
d.127.1.1
Length = 262
Score = 26.3 bits (59), Expect = 6.2
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 13/42 (30%)
Query: 12 VVVFG---NDRLIKEGDIVK-RTGAIVD---------VPVGE 40
VV G +++ KEGDIV GA+ VGE
Sbjct: 86 EVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGE 127
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 25.7 bits (56), Expect = 6.3
Identities = 5/18 (27%), Positives = 8/18 (44%)
Query: 145 CKHEFCWMCLGNTIDGKG 162
C+H C CL + +
Sbjct: 70 CQHNVCKDCLDRSFRAQV 87
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila
melanogaster}
Length = 381
Score = 26.4 bits (57), Expect = 6.5
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 127 CHIC---IEKNGGCNHMQC--YHCKHEFCWMCL 154
C+IC G + C C + +CL
Sbjct: 311 CNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCL 343
>3bga_A Beta-galactosidase; NYSGXRC, protein structure initiative II
(PSI-II), glycosyl hydrolase family 2, jelly-roll fold;
2.10A {Bacteroides thetaiotaomicron vpi-5482} PDB:
3dec_A
Length = 1010
Score = 26.3 bits (58), Expect = 7.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 53 TIDGKGPLKTTTRFRVGIKAPGIIPRISVR 82
+D G LK T F+ + R+ +
Sbjct: 828 ALDKNGALKVRTTFQPDTAIVKSMARLGLT 857
Score = 26.3 bits (58), Expect = 7.9
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 157 TIDGKGPLKTTTRFRVGIKAPGIIPRISVR 186
+D G LK T F+ + R+ +
Sbjct: 828 ALDKNGALKVRTTFQPDTAIVKSMARLGLT 857
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 24.3 bits (53), Expect = 8.6
Identities = 9/34 (26%), Positives = 12/34 (35%), Gaps = 4/34 (11%)
Query: 120 HTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMC 153
D +C IC++ C H FC C
Sbjct: 11 QLTDEEECCICMDGR----ADLILPCAHSFCQKC 40
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 24.4 bits (53), Expect = 8.9
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 145 CKHEFCWMCLGNTIDGKGP 163
C H FC C+ + P
Sbjct: 33 CGHRFCESCMAALLSSSSP 51
>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase,
hydrolase-lipid binding P complex; 3.30A {Homo sapiens}
PDB: 3p5c_L
Length = 400
Score = 26.0 bits (56), Expect = 9.5
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 5/33 (15%)
Query: 130 CIEKNGGCNHM-----QCYHCKHEFCWMCLGNT 157
C++ NGGC+H+ Y C + +
Sbjct: 3 CLDNNGGCSHVCNDLKIGYECLCPDGFQLVAQR 35
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0436 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,000,019
Number of extensions: 183779
Number of successful extensions: 767
Number of sequences better than 10.0: 1
Number of HSP's gapped: 746
Number of HSP's successfully gapped: 170
Length of query: 191
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 103
Effective length of database: 4,244,745
Effective search space: 437208735
Effective search space used: 437208735
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.3 bits)