RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy271
(191 letters)
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of
F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 88.7 bits (220), Expect = 3e-22
Identities = 46/56 (82%), Positives = 51/56 (91%)
Query: 34 VDVPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQSGI 89
VDVPVGE+LLGRVVDALGN IDGKGP+ + R RVG+KAPGIIPRISVREPMQ+GI
Sbjct: 1 VDVPVGEELLGRVVDALGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQTGI 56
Score = 51.3 bits (123), Expect = 8e-09
Identities = 29/37 (78%), Positives = 32/37 (86%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
LGN IDGKGP+ + R RVG+KAPGIIPRISVREPMQ
Sbjct: 17 LGNAIDGKGPIGSKARRRVGLKAPGIIPRISVREPMQ 53
>d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of
F1 ATP synthase {Spinach (Spinacia oleracea),
chloroplast [TaxId: 3562]}
Length = 276
Score = 83.1 bits (205), Expect = 4e-20
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 36 VPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+PV E LGRV++AL IDG+G + + + APGI+ R SV EP+Q+G+
Sbjct: 2 IPVSEAYLGRVINALAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQTGL 55
Score = 48.4 bits (115), Expect = 1e-07
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
L IDG+G + + + APGI+ R SV EP+Q
Sbjct: 16 LAKPIDGRGEITASESRLIESPAPGIMSRRSVYEPLQ 52
>d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1
ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 276
Score = 77.1 bits (190), Expect = 5e-18
Identities = 18/54 (33%), Positives = 32/54 (59%)
Query: 36 VPVGEDLLGRVVDALGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQSGI 89
+PVG + LGR+++ +G ID +GP+KT + +AP + +E + +GI
Sbjct: 3 IPVGPETLGRIMNVIGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILVTGI 56
Score = 45.1 bits (107), Expect = 1e-06
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 154 LGNTIDGKGPLKTTTRFRVGIKAPGIIPRISVREPMQ 190
+G ID +GP+KT + +AP + +E +
Sbjct: 17 IGEPIDERGPIKTKQFAAIHAEAPEFVEMSVEQEILV 53
>d1wd2a_ g.44.1.1 (A:) Ariadne-1 protein homolog {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 69.5 bits (170), Expect = 5e-17
Identities = 28/42 (66%), Positives = 36/42 (85%), Gaps = 2/42 (4%)
Query: 116 YISAHTKDCPKCHICIEKNGGCNHMQC--YHCKHEFCWMCLG 155
+I+A+TK+CPKCH+ IEK+GGCNHM C +CK EFCW+CLG
Sbjct: 1 WIAANTKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLG 42
>d2ct7a1 g.44.1.4 (A:8-80) Ring finger protein 31 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 61.6 bits (149), Expect = 7e-14
Identities = 8/55 (14%), Positives = 11/55 (20%)
Query: 111 SETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGPLK 165
+E C +C C C FC C +
Sbjct: 8 TEGVLMRDPKFLWCAQCSFGFIYEREQLEATCPQCHQTFCVRCKRQWEEQHRGRS 62
>d1skyb2 b.49.1.1 (B:21-95) F1 ATP synthase alpha subunit, domain
1 {Bacillus sp., strain ps3 [TaxId: 1409]}
Length = 75
Score = 55.9 bits (135), Expect = 1e-11
Identities = 21/34 (61%), Positives = 26/34 (76%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIV 34
MALNLE +NVG+V+ G IKEGD V+RTG I+
Sbjct: 42 MALNLEENNVGIVILGPYTGIKEGDEVRRTGRIM 75
>d2jdia2 b.49.1.1 (A:24-94) F1 ATP synthase alpha subunit, domain
1 {Cow (Bos taurus) [TaxId: 9913]}
Length = 71
Score = 54.7 bits (132), Expect = 3e-11
Identities = 31/33 (93%), Positives = 33/33 (100%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAI 33
M+LNLEPDNVGVVVFGND+LIKEGDIVKRTGAI
Sbjct: 39 MSLNLEPDNVGVVVFGNDKLIKEGDIVKRTGAI 71
>d1fx0a2 b.49.1.1 (A:25-96) F1 ATP synthase alpha subunit, domain
1 {Spinach (Spinacia oleracea), chloroplast [TaxId:
3562]}
Length = 72
Score = 53.9 bits (130), Expect = 6e-11
Identities = 19/33 (57%), Positives = 25/33 (75%)
Query: 1 MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAI 33
+ALNLE +NVGVV+ G+ +I+EG VK TG I
Sbjct: 39 IALNLESNNVGVVLMGDGLMIQEGSSVKATGRI 71
>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain
{Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8
[TaxId: 37296]}
Length = 60
Score = 31.4 bits (70), Expect = 0.009
Identities = 10/34 (29%), Positives = 11/34 (32%), Gaps = 2/34 (5%)
Query: 123 DCPKCHICIEKNGGCNHMQCYH--CKHEFCWMCL 154
D P C IC E+ G C CL
Sbjct: 5 DVPVCWICNEELGNERFRACGCTGELENVHRSCL 38
>d1wepa_ g.50.1.2 (A:) PHD finger protein 8 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 79
Score = 29.3 bits (65), Expect = 0.069
Identities = 8/33 (24%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 124 CPKCHICIEKNGGCNHM-QCYHCKHEFCWMCLG 155
P +C + + M +C C+ F C+G
Sbjct: 11 VPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVG 43
>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1
(RAG1), dimerization domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 28.7 bits (64), Expect = 0.11
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGP 163
C IC CKH FC +C+ + G
Sbjct: 25 SCQICEHI---LADPVETSCKHLFCRICILRCLKVMGS 59
>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa)
[TaxId: 4530]}
Length = 55
Score = 27.9 bits (62), Expect = 0.12
Identities = 8/34 (23%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 122 KDCPKCHICIEK-NGGCNHMQCYHCKHEFCWMCL 154
D +C +C+ + G C H F C+
Sbjct: 3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECV 36
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 28.1 bits (62), Expect = 0.14
Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 122 KDCPKCHICIEK-NGGCNHMQCYHCKHEFCWMCLGNTI 158
+ C C + + C C + FC C
Sbjct: 6 NEVQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAKNA 43
>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 94
Score = 28.1 bits (62), Expect = 0.21
Identities = 7/41 (17%), Positives = 15/41 (36%)
Query: 121 TKDCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGK 161
+ C +C+ + C+ FC +CL ++
Sbjct: 2 SSGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELL 42
>d2jnea1 g.41.18.1 (A:1-71) Hypothetical protein YfgJ {Escherichia
coli [TaxId: 562]}
Length = 71
Score = 27.5 bits (61), Expect = 0.27
Identities = 7/28 (25%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 123 DCPKCHICIEKNGGCNHMQCYHCKHEFC 150
CP+C ++++ G H +C C
Sbjct: 4 HCPQCQHVLDQDNG--HARCRSCGEFIE 29
>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine
herpesvirus 1 [TaxId: 10326]}
Length = 68
Score = 26.8 bits (59), Expect = 0.37
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
+C IC+E N+ C H FC++C+
Sbjct: 7 RCPICLEDP--SNYSMALPCLHAFCYVCI 33
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.8 bits (61), Expect = 0.44
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 126 KCHICIEKNG--GCNHMQCYHCKHEFCWMCLGNTIDGKG 162
+C +C E+ G G + C CK C C T + +
Sbjct: 50 RCILCGEQLGMLGSASVVCEDCKKNVCTKCGVETSNNRP 88
>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 97
Score = 26.7 bits (58), Expect = 0.91
Identities = 7/29 (24%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
+C C + C+H FC C+
Sbjct: 24 RCSRCTNIL--REPVCLGGCEHIFCSNCV 50
>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 25.9 bits (56), Expect = 1.1
Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCL 154
CP+C +N M C H C C+
Sbjct: 5 GCPRCKTTKYRNPSLKLMVN-VCGHTLCESCV 35
Score = 23.6 bits (50), Expect = 5.6
Identities = 6/45 (13%), Positives = 9/45 (20%), Gaps = 2/45 (4%)
Query: 107 CADDSETANYISAHTKDCPK--CHICIEKNGGCNHMQCYHCKHEF 149
C + C C C++ C C
Sbjct: 9 CKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 25.8 bits (56), Expect = 1.1
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 1/31 (3%)
Query: 126 KCHICIEKNGGCNHM-QCYHCKHEFCWMCLG 155
+C C E C C+ F C+
Sbjct: 8 QCGACGESYAADEFWICCDLCEMWFHGKCVK 38
>d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal
domain {Fission yeast (Schizosaccharomyces pombe)
[TaxId: 4896]}
Length = 296
Score = 27.1 bits (59), Expect = 1.3
Identities = 14/147 (9%), Positives = 33/147 (22%), Gaps = 7/147 (4%)
Query: 5 LEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEDLLGRVVDA-----LGNTIDGK-G 58
++P V ++R + K + D+ G A LGN
Sbjct: 46 IDP-EEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAFLSHVR 104
Query: 59 PLKTTTRFRVGIKAPGIIPRISVREPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYIS 118
+ + II +P++ + + + +
Sbjct: 105 AVDAIYQVVRAFDDAEIIHVEGDVDPIRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGA 164
Query: 119 AHTKDCPKCHICIEKNGGCNHMQCYHC 145
+ K ++
Sbjct: 165 NTLEMKAKKEEQAIIEKVYQYLTETKQ 191
>d1r5ta_ c.97.1.1 (A:) mono-domain cytidine deaminase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 141
Score = 25.8 bits (56), Expect = 2.7
Identities = 10/50 (20%), Positives = 16/50 (32%), Gaps = 3/50 (6%)
Query: 104 LTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCKH---EFC 150
CA+ S + A + KC + + C C+ EF
Sbjct: 57 NCICAERSAMIQVLMAGHRSGWKCMVICGDSEDQCVSPCGVCRQFINEFV 106
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein 19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 25.0 bits (54), Expect = 2.8
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 1/34 (2%)
Query: 126 KCHICIEK-NGGCNHMQCYHCKHEFCWMCLGNTI 158
+C+ C K C +C FC CL +
Sbjct: 11 RCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSFSA 44
>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 25.0 bits (54), Expect = 2.8
Identities = 10/41 (24%), Positives = 15/41 (36%), Gaps = 3/41 (7%)
Query: 123 DCPKCHICIEKNGGCNHMQCYHCKHEFCWMCLGNTIDGKGP 163
C IC E ++ C H C CL + + +G
Sbjct: 22 TFQLCKICAEN---DKDVKIEPCGHLMCTSCLTSWQESEGQ 59
>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia
proto-oncoprotein PML {Human (Homo sapiens) [TaxId:
9606]}
Length = 56
Score = 24.1 bits (52), Expect = 3.5
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 3/28 (10%)
Query: 127 CHICIEKNGGCNHMQCYHCKHEFCWMCL 154
C C + + C H C CL
Sbjct: 9 CQQCQAE---AKCPKLLPCLHTLCSGCL 33
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 67
Score = 24.2 bits (52), Expect = 4.1
Identities = 11/39 (28%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 122 KDCPKCHICIEK-NGGCNHMQCYHCKHEFCWMCLGNTID 159
D C IC +K + C C FC N+I
Sbjct: 3 IDSDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSNSIP 41
>d2ix4a2 c.95.1.1 (A:301-461) Beta-ketoacyl-ACP synthase II {Thale
cress (Arabidopsis thaliana), mitochondrial isoform
[TaxId: 3702]}
Length = 161
Score = 25.1 bits (54), Expect = 4.7
Identities = 8/72 (11%), Positives = 17/72 (23%), Gaps = 4/72 (5%)
Query: 93 APTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCKHEFCWM 152
+ + L + +Y++AH P + +
Sbjct: 23 GKGAVLAMTRALRQSGLCPNQIDYVNAHATSTPIGDAVE----ARAIKTVFSEHATSGTL 78
Query: 153 CLGNTIDGKGPL 164
+T G L
Sbjct: 79 AFSSTKGATGHL 90
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.4 bits (50), Expect = 5.2
Identities = 9/30 (30%), Positives = 9/30 (30%), Gaps = 1/30 (3%)
Query: 125 PKCHICIEKNG-GCNHMQCYHCKHEFCWMC 153
P C C C CK FC C
Sbjct: 1 PSCKSCGAHFANTARKQTCLDCKKNFCMTC 30
>d1v6za2 c.116.1.5 (A:67-228) Hypothetical protein TTHA0657 (TT1575)
{Thermus thermophilus [TaxId: 274]}
Length = 162
Score = 25.1 bits (54), Expect = 5.3
Identities = 10/80 (12%), Positives = 19/80 (23%), Gaps = 6/80 (7%)
Query: 90 EYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCYHCK-HE 148
E P + + + + + GG + +
Sbjct: 73 EVLPPIPLKAVPQVAQGLVAHVGATARVREVLDPEKPLALAVGPEGGFAEEEVALLEARG 132
Query: 149 FCWMCLGNTIDGKGPLKTTT 168
F + LG I L+ T
Sbjct: 133 FTPVSLGRRI-----LRAET 147
>d1dvpa2 g.50.1.1 (A:149-220) Hrs {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 72
Score = 23.9 bits (51), Expect = 5.4
Identities = 10/38 (26%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 122 KDCPKCHICIEKNGGCNHMQ-CYHCKHEFCWMCLGNTI 158
D CH C + N C +C FC C
Sbjct: 11 ADGRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAKQC 48
>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 56
Score = 23.6 bits (50), Expect = 5.6
Identities = 4/28 (14%), Positives = 7/28 (25%), Gaps = 2/28 (7%)
Query: 127 CHICIEKNGGCNHMQCYHCKHEFCWMCL 154
C I + + + F L
Sbjct: 3 CAISGKVP--RRPVLSPKSRTIFEKSLL 28
>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 23.1 bits (49), Expect = 6.1
Identities = 6/38 (15%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 127 CHICIEK-NGGCNHMQCYHCKHEFCWMCLGNTIDGKGP 163
C +C+E + C ++ C C +
Sbjct: 3 CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENG 40
>d1z60a1 g.49.1.2 (A:328-386) TFIIH p44 subunit cysteine-rich domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 59
Score = 23.2 bits (50), Expect = 6.2
Identities = 7/28 (25%), Positives = 12/28 (42%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMC 153
C+ C + + C C++ FC C
Sbjct: 17 FCYGCQGELKDQHVYVCAVCQNVFCVDC 44
>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription
factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 23.0 bits (49), Expect = 6.8
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMCLG 155
+C +C +K + C C F CL
Sbjct: 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLR 31
>d1erda_ a.10.1.1 (A:) ER-2 {Euplotes raikovi [TaxId: 5938]}
Length = 40
Score = 22.7 bits (48), Expect = 7.0
Identities = 9/30 (30%), Positives = 13/30 (43%)
Query: 130 CIEKNGGCNHMQCYHCKHEFCWMCLGNTID 159
C + C H C +C+ C+G T D
Sbjct: 5 CEQAMASCEHTMCGYCQGPLYMTCIGITTD 34
>d1wfpa_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing
protein At1g12440 {Thale cress (Arabidopsis thaliana)
[TaxId: 3702]}
Length = 74
Score = 23.3 bits (50), Expect = 7.8
Identities = 7/28 (25%), Positives = 9/28 (32%), Gaps = 2/28 (7%)
Query: 126 KCHICIEKNGGCNHMQCYHCKHEFCWMC 153
+C C +K G C FC
Sbjct: 27 RCLSCNKKVGVTGF--KCRCGSTFCGTH 52
>d1b43a2 c.120.1.2 (A:1-219) Flap endonuclease-1 (Fen-1 nuclease)
{Archaeon Pyrococcus furiosus [TaxId: 2261]}
Length = 219
Score = 24.4 bits (52), Expect = 8.3
Identities = 7/83 (8%), Positives = 21/83 (25%), Gaps = 5/83 (6%)
Query: 83 EPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKCH----ICIEKNGGCN 138
+ + + A K + E A + + + + G
Sbjct: 85 FKKKELEKRREAREEAEEKWREALEKGEIEEARKYAQRATRVNEMLIEDAKKLLELMGIP 144
Query: 139 HMQC-YHCKHEFCWMCLGNTIDG 160
+Q + + +M ++
Sbjct: 145 IVQAPSEGEAQAAYMAAKGSVYA 167
>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF
ubiquitin ligase complex {Human (Homo sapiens) [TaxId:
9606]}
Length = 88
Score = 23.6 bits (50), Expect = 8.6
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 6/61 (9%)
Query: 100 IKKW--LTKCADDSETANYISAHTKDCPKCHICIEKNGGCNHMQCY----HCKHEFCWMC 153
+KKW + A D N C C +C C H F + C
Sbjct: 6 VKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHC 65
Query: 154 L 154
+
Sbjct: 66 I 66
>d1r8na_ b.42.4.1 (A:) Serine protease inhibitor DrTI {Royal
poinciana (Delonix regia) [TaxId: 72433]}
Length = 185
Score = 24.1 bits (52), Expect = 9.3
Identities = 23/104 (22%), Positives = 36/104 (34%), Gaps = 11/104 (10%)
Query: 68 VGIKAPGIIPRISVREPMQSGIEYHAPTDCAVIKKWLTKCADDSETANYISAHTKDCPKC 127
V +P + + IE+ DCA KW DS A ++D P+
Sbjct: 61 VRFSSPEEKQGK-IYTDTELEIEFVEKPDCAESSKW--VIVKDSGEARVAIGGSEDHPQG 117
Query: 128 HIC-----IEKNGGCNHMQCYHCKHEFCWMC--LGNTIDGKGPL 164
+ IEK G + + C C +G +G+ L
Sbjct: 118 ELVRGFFKIEKLGSLAY-KLVFCPKSDSGSCSDIGINYEGRRSL 160
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.449
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 757,612
Number of extensions: 37497
Number of successful extensions: 269
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 82
Length of query: 191
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 111
Effective length of database: 1,309,196
Effective search space: 145320756
Effective search space used: 145320756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.6 bits)