RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2711
(114 letters)
>gnl|CDD|215886 pfam00379, Chitin_bind_4, Insect cuticle protein. Many insect
cuticular proteins include a 35-36 amino acid motif
known as the R&R consensus. The extensive conservation
of this region led to the suggestion that it functions
to bind chitin. Provocatively, it has no sequence
similarity to the well-known cysteine-containing
chitin-binding domain found in chitinases and some
peritrophic membrane proteins. Chitin binding has been
shown experimentally for this region. Thus arthropods
have two distinct classes of chitin binding proteins,
those with the chitin-binding domain found in lectins,
chitinases and peritrophic membranes (cysCBD) and those
with the cuticular protein chitin-binding domain
(non-cysCBD).
Length = 51
Score = 52.3 bits (126), Expect = 9e-11
Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 41 FGSAYTQEDGV---QFTEESDQDGNRRGAYSYIDPSGQRRTITYTAGKNGF 88
+ Y DG + D G +G+YSY+DP G+ RT+TY A +NGF
Sbjct: 1 YSFGYETSDGKTQEEGRGTEDDGGVVKGSYSYVDPDGKLRTVTYVADENGF 51
>gnl|CDD|206701 cd04128, Spg1, Septum-promoting GTPase (Spg1). Spg1p. Spg1p
(septum-promoting GTPase) was first identified in the
fission yeast S. pombe, where it regulates septum
formation in the septation initiation network (SIN)
through the cdc7 protein kinase. Spg1p is an essential
gene that localizes to the spindle pole bodies. When
GTP-bound, it binds cdc7 and causes it to translocate
to spindle poles. Sid4p (septation initiation
defective) is required for localization of Spg1p to the
spindle pole body, and the ability of Spg1p to promote
septum formation from any point in the cell cycle
depends on Sid4p. Spg1p is negatively regulated by Byr4
and cdc16, which form a two-component GTPase activating
protein (GAP) for Spg1p. The existence of a SIN-related
pathway in plants has been proposed. GTPase activating
proteins (GAPs) interact with GTP-bound Rab and
accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization.
Length = 182
Score = 30.4 bits (69), Expect = 0.12
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 39 GQFGSAYTQEDGVQFTEESDQDGNRRGAYSYIDPSGQRRTIT 80
G+F Y Q GV F E++ +S D GQR I
Sbjct: 23 GEFDEEYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFIN 64
>gnl|CDD|222634 pfam14262, DUF4353, Domain of unknown function (DUF4353). This
family is found in bacteria and archaea, and is
typically between 262 and 279 amino acids in length.
Length = 264
Score = 28.3 bits (64), Expect = 0.69
Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 8/47 (17%)
Query: 47 QEDGVQFTEESDQDGNRRGAYSYIDPSGQRRTITYTAGKNGFQASGD 93
DG++ SD D + Y YI TIT TAG +G QAS D
Sbjct: 157 GGDGIK----SDNDEDTTKGYVYITGG----TITITAGDDGIQASTD 195
>gnl|CDD|234764 PRK00442, tatA, twin arginine translocase protein A; Provisional.
Length = 92
Score = 27.1 bits (60), Expect = 1.2
Identities = 8/20 (40%), Positives = 9/20 (45%)
Query: 92 GDDIPVAPPAPPAPAPVAPQ 111
+D P PAPPA Q
Sbjct: 48 KEDKPAEQPAPPAQPVPPVQ 67
>gnl|CDD|239543 cd03460, 1,2-CTD, Catechol 1,2 dioxygenase (1,2-CTD) catalyzes an
intradiol cleavage reaction of catechol to form
cis,cis-muconate. 1,2-CTDs is homodimers with one
catalytic non-heme ferric ion per monomer. They belong
to the aromatic dioxygenase family, a family of
mononuclear non-heme iron intradiol-cleaving enzymes
that catalyze the oxygenation of catecholates to
aliphatic acids via the cleavage of aromatic rings.
Length = 282
Score = 26.9 bits (60), Expect = 2.0
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 8/47 (17%)
Query: 62 NRRGAYSYIDPSGQ-----RRTITYTAGKNGFQASGDDIPVAPPAPP 103
N +G YS+ DP+ R IT G+ F++ +P PP
Sbjct: 150 NSKGFYSHFDPTQSPFNLRRSIITDADGRYRFRSI---MPSGYGVPP 193
>gnl|CDD|165460 PHA03190, PHA03190, UL14 tegument protein; Provisional.
Length = 196
Score = 27.0 bits (59), Expect = 2.0
Identities = 18/82 (21%), Positives = 32/82 (39%), Gaps = 7/82 (8%)
Query: 32 KRYLSNNGQFGSAYTQEDGVQFTEESDQDGNRRGAYSYIDPSGQRRTITYTAGKNG---- 87
+RYL N+ F + E E D + +I P+ + R + ++
Sbjct: 95 RRYLRND--FLDTFAAEADAIADAEIDLECAEAEIALHI-PADEDRRDSLDCEEDDLLLK 151
Query: 88 FQASGDDIPVAPPAPPAPAPVA 109
+Q G + P P P AP+ +
Sbjct: 152 WQLEGANPPSLLPIPHAPSGES 173
>gnl|CDD|132767 cd07306, Porin3_VDAC, Voltage-dependent anion channel of the outer
mitochondrial membrane. The voltage-dependent anion
channel (VDAC) regulates the flux of mostly anionic
metabolites through the outer mitochondrial membrane,
which is highly permeable to small molecules. VDAC is
the most abundant protein in the outer membrane, and
membrane potentials can toggle VDAC between open or
high-conducting and closed or low-conducting forms. VDAC
binds to and is regulated in part by hexokinase, an
interaction that renders mitochondria less susceptible
to pro-apoptotic signals, most likely by intefering with
VDAC's capability to respond to Bcl-2 family proteins.
While VDAC appears to play a key role in mitochondrially
induced cell death, a proposed involvement in forming
the mitochondrial permeability transition pore, which is
characteristic for damaged mitochondria and apoptosis,
has been challenged by more recent studies.
Length = 276
Score = 26.8 bits (60), Expect = 2.3
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Query: 12 SLSVAQQYVKDPKEAAILSEKRYLSNNGQFGSAYTQE--DGVQFT 54
+ +V QY DP A++ K ++N+GQ G +Y + GV T
Sbjct: 212 TFAVGGQYALDPD--ALVKAK--VNNDGQLGLSYQHKLRPGVTLT 252
>gnl|CDD|227662 COG5368, COG5368, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 451
Score = 27.1 bits (60), Expect = 2.3
Identities = 21/80 (26%), Positives = 25/80 (31%), Gaps = 7/80 (8%)
Query: 33 RYLSNNGQFGSAYTQEDGVQFTEESDQDGNRRGAYSYIDPSGQRRTITYTAGKNGFQASG 92
R +N G ED + D P +RR Y A F
Sbjct: 276 RDYANYNPCGFRGYGEDLWGLSA-CDGPKGYVVNS----PGRRRRFFGYRARGAPFGE-- 328
Query: 93 DDIPVAPPAPPAPAPVAPQV 112
DD +AP A A P AP
Sbjct: 329 DDGTIAPTAALASLPFAPDR 348
>gnl|CDD|148225 pfam06486, DUF1093, Protein of unknown function (DUF1093). This
family consists of several hypothetical bacterial
proteins of unknown function.
Length = 78
Score = 25.6 bits (57), Expect = 2.7
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 12/48 (25%)
Query: 45 YTQ--EDGVQFTEESDQDGNRRGAYSYI----DPSGQRRTITYTAGKN 86
Y Q DG + E+ D G Y Y D G+ + + +TA K
Sbjct: 10 YVQITNDGKKDGEKKD------GRYEYTLKAYDEDGKEKEVKFTADKK 51
>gnl|CDD|220596 pfam10138, Tellurium_res, Tellurium resistance protein. Members of
this family confer resistance to the metalloid element
tellurium and its salts.
Length = 98
Score = 25.8 bits (57), Expect = 3.7
Identities = 10/15 (66%), Positives = 10/15 (66%)
Query: 96 PVAPPAPPAPAPVAP 110
PV PPAP PAP P
Sbjct: 4 PVPPPAPAPPAPAPP 18
Score = 25.0 bits (55), Expect = 6.2
Identities = 11/15 (73%), Positives = 11/15 (73%)
Query: 96 PVAPPAPPAPAPVAP 110
P AP PPAPAP AP
Sbjct: 1 PAAPVPPPAPAPPAP 15
>gnl|CDD|218251 pfam04762, IKI3, IKI3 family. Members of this family are
components of the elongator multi-subunit component of a
novel RNA polymerase II holoenzyme for transcriptional
elongation. This region contains WD40 like repeats.
Length = 903
Score = 26.1 bits (58), Expect = 4.5
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 12 SLSVAQQYVKDPKE 25
+L VAQ+ KDPKE
Sbjct: 852 ALLVAQKSQKDPKE 865
>gnl|CDD|227032 COG4688, COG4688, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 665
Score = 26.1 bits (57), Expect = 4.6
Identities = 10/69 (14%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 21 KDPKEAAILSEKRYLSNNGQFGSAYTQEDGVQFTEESDQDGNRRGAYSYIDPSGQRRTIT 80
L E R + + + + Q + + + A++ + G R+ +T
Sbjct: 582 CRHLSITNLPENRAHLTSLE-RKLVAKLEHAQARPATTPGRDNQIAHAQVRLDGVRKLLT 640
Query: 81 YTAGKNGFQ 89
G+ F
Sbjct: 641 TADGERPFP 649
>gnl|CDD|233026 TIGR00564, trpE_most, anthranilate synthase component I,
non-proteobacterial lineages. This enzyme resembles
some other chorismate-binding enzymes, including
para-aminobenzoate synthase (pabB) and isochorismate
synthase. There is a fairly deep split between two
sets, seen in the pattern of gaps as well as in amino
acid sequence differences. Archaeal enzymes have been
excluded from this model (and are now found in
TIGR01820) as have a clade of enzymes which constitute
a TrpE paralog which may have PabB activity
(TIGR01824). This allows the B. subtilus paralog which
has been shown to have PabB activity to score below
trusted to this model. This model contains sequences
from gram-positive bacteria, certain proteobacteria,
cyanobacteria, plants, fungi and assorted other
bacteria.A second family of TrpE enzymes is modelled by
TIGR00565. The breaking of the TrpE family into these
diverse models allows for the separation of the models
for the related enzyme, PabB [Amino acid biosynthesis,
Aromatic amino acid family].
Length = 454
Score = 26.1 bits (58), Expect = 4.9
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Query: 56 ESDQDGNRRGAYSYIDPSGQRRTITYTAGKNGFQASGDDIP 96
ES + G+ RG YS+I G +T DD
Sbjct: 22 ESAEPGSERGRYSFI---GLNPVLTIKTEGGTEYLGADDRR 59
>gnl|CDD|237783 PRK14667, uvrC, excinuclease ABC subunit C; Provisional.
Length = 567
Score = 25.9 bits (57), Expect = 5.4
Identities = 10/19 (52%), Positives = 11/19 (57%)
Query: 17 QQYVKDPKEAAILSEKRYL 35
+Q DPKE AI SE L
Sbjct: 46 KQSETDPKERAIFSESSSL 64
>gnl|CDD|181765 PRK09294, PRK09294, acyltransferase PapA5; Provisional.
Length = 416
Score = 25.4 bits (56), Expect = 7.2
Identities = 6/19 (31%), Positives = 8/19 (42%)
Query: 94 DIPVAPPAPPAPAPVAPQV 112
++P P A P PQ
Sbjct: 187 ELPPTPTAAVLAKPGLPQA 205
>gnl|CDD|213641 TIGR01641, phageSPP1_gp7, phage putative head morphogenesis
protein, SPP1 gp7 family. This model describes a region
of about 110 amino acids found exclusively in
phage-related proteins, internally or toward the
C-terminus. One member, gp7 of phage SPP1, appears
involved in head morphogenesis [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 108
Score = 25.0 bits (55), Expect = 7.3
Identities = 12/42 (28%), Positives = 12/42 (28%), Gaps = 1/42 (2%)
Query: 62 NRRGAYSYIDPSGQRRTITYTAGKNGFQASGDDIPVAPPAPP 103
Y YI RT NG DD APP
Sbjct: 55 KAGPIYEYIA-IIDSRTRPICRALNGKIFKVDDAVPGVNAPP 95
>gnl|CDD|238821 cd01643, Bacterial_IMPase_like_2, Bacterial family of Mg++
dependent phosphatases, related to inositol
monophosphatases. These enzymes may dephosphorylate
inositol monophosphate or similar substrates.
Length = 242
Score = 25.4 bits (56), Expect = 8.4
Identities = 10/24 (41%), Positives = 10/24 (41%), Gaps = 1/24 (4%)
Query: 49 DGVQFTEESDQDGNRRGAYSYIDP 72
DGV EE G Y IDP
Sbjct: 56 DGV-LGEEGGGIFPSSGWYWVIDP 78
>gnl|CDD|119252 pfam10732, DUF2524, Protein of unknown function (DUF2524). This
family of proteins with unknown function appears to be
restricted to Bacillaceae bacteria.
Length = 84
Score = 24.3 bits (53), Expect = 8.5
Identities = 5/26 (19%), Positives = 14/26 (53%)
Query: 48 EDGVQFTEESDQDGNRRGAYSYIDPS 73
E +++ E + +R+ Y+ ++ S
Sbjct: 15 EQALEYANEQFEQASRQEHYNDVEYS 40
>gnl|CDD|227315 COG4982, COG4982, 3-oxoacyl-[acyl-carrier protein].
Length = 866
Score = 25.6 bits (56), Expect = 8.5
Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 6/27 (22%)
Query: 90 ASGDDIPVAP------PAPPAPAPVAP 110
A + P AP PA APAPVA
Sbjct: 12 AKEEATPPAPAASAPAPAAAAPAPVAA 38
>gnl|CDD|236234 PRK08312, PRK08312, putative indolepyruvate oxidoreductase subunit
B; Reviewed.
Length = 510
Score = 25.3 bits (56), Expect = 9.9
Identities = 12/25 (48%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 87 GFQASGDDIPVAPPAPPAPAPVAPQ 111
GF A+ APP P A AP AP+
Sbjct: 208 GFAAAQQG-GAAPPPPAAAAPTAPR 231
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.131 0.377
Gapped
Lambda K H
0.267 0.0796 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,954,166
Number of extensions: 504272
Number of successful extensions: 1059
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1033
Number of HSP's successfully gapped: 88
Length of query: 114
Length of database: 10,937,602
Length adjustment: 78
Effective length of query: 36
Effective length of database: 7,477,990
Effective search space: 269207640
Effective search space used: 269207640
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (24.1 bits)