RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2711
         (114 letters)



>3mfb_A Uncharacterized protein; alpha-beta protein, structural genomics,
           PSI-2, protein structure initiative; 2.20A {Erwinia
           carotovora}
          Length = 157

 Score = 30.5 bits (68), Expect = 0.076
 Identities = 9/47 (19%), Positives = 14/47 (29%)

Query: 64  RGAYSYIDPSGQRRTITYTAGKNGFQASGDDIPVAPPAPPAPAPVAP 110
              Y + +      TI +T    G +   D      P  P+  P   
Sbjct: 62  NNRYEFWEEGATGPTILWTPDNPGIELPTDTAHGEQPVIPSAIPGLE 108


>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest
           center for structural genomics, protein struc
           initiative, MCSG; 2.10A {Bifidobacterium longum subsp}
          Length = 535

 Score = 26.0 bits (57), Expect = 3.4
 Identities = 14/59 (23%), Positives = 22/59 (37%), Gaps = 6/59 (10%)

Query: 21  KDPKEAA-----ILSEK-RYLSNNGQFGSAYTQEDGVQFTEESDQDGNRRGAYSYIDPS 73
            +   A      + SEK       G FG A T+    ++T ++D+     G   Y   S
Sbjct: 361 ANKDAALKLANLLYSEKYSVQQFLGSFGKAITKTGEHEYTVDNDKLSQLTGDNQYPGLS 419


>1mhs_A Proton pump, plasma membrane ATPase; ION transport, membrane
           protein, P-type ATPase, active transport, cryo-electron
           microscopy; 8.00A {Neurospora crassa} SCOP: i.18.1.1
          Length = 920

 Score = 25.0 bits (55), Expect = 6.7
 Identities = 15/79 (18%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 2   EKLVFLFAIASLSVAQQYVKDPKEAAILSEKRYLSNNGQFGSAYTQEDGVQFTEESDQDG 61
           E L+    +A+    ++   D  + A L   +Y        S Y       F   S    
Sbjct: 402 EDLMLTACLAA--SRKKKGIDAIDKAFLKSLKYYPRAKSVLSKYKVLQFHPFDPVS---- 455

Query: 62  NRRGAYSYIDPSGQRRTIT 80
            ++       P G+R T  
Sbjct: 456 -KKVVAVVESPQGERITCV 473


>2o6p_A Iron-regulated surface determinant protein C; beta barrel,
          protein-heme complex, transport protein; HET: HEM;
          1.50A {Staphylococcus aureus subsp} SCOP: b.1.28.1
          Length = 161

 Score = 24.4 bits (52), Expect = 8.4
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 12 SLSVAQQYVKDPKEAAILSEKRYLS---NNGQFGSAYTQEDGVQFTEESDQDGNRR 64
            S+A  Y   P +    + K Y+    N+  + +  + E   +     +   + R
Sbjct: 18 DTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDER 73


>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer,
           oxidoreductase, calcium- binding, methanol utilization,
           PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP:
           b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
          Length = 599

 Score = 24.9 bits (54), Expect = 8.9
 Identities = 9/55 (16%), Positives = 14/55 (25%), Gaps = 6/55 (10%)

Query: 58  DQDG-NRRGAYSYIDPSGQRRTITYTAGKNGF-----QASGDDIPVAPPAPPAPA 106
           D  G N        D  G+ R +     +NG      +  G  +           
Sbjct: 303 DYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNV 357


>2vzp_A Aocbm35, EXO-beta-D-glucosaminidase; family 35, CSXA, glucuronic
          acid, hydrolase; 1.05A {Amycolatopsis orientalis} PDB:
          2vzq_A* 2vzr_A*
          Length = 127

 Score = 24.4 bits (53), Expect = 9.1
 Identities = 13/75 (17%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 25 EAAILSEKRYLSNN-GQFGSAY-----TQEDGVQFTEESDQDGNRRGAYSYIDPSGQRRT 78
          E A + +    SN+ G  G+ +          V++T      G       Y + +   R 
Sbjct: 9  EDATIVQGAVESNHAGYTGTGFVNYDNVAGSSVEWTVTVPSAGTYDVVVRYANGTTTSRP 68

Query: 79 ITYTAGKNGFQASGD 93
          + ++   NG  ++  
Sbjct: 69 LDFSV--NGSISASG 81


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0614    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,737,023
Number of extensions: 92844
Number of successful extensions: 213
Number of sequences better than 10.0: 1
Number of HSP's gapped: 212
Number of HSP's successfully gapped: 22
Length of query: 114
Length of database: 6,701,793
Length adjustment: 77
Effective length of query: 37
Effective length of database: 4,551,876
Effective search space: 168419412
Effective search space used: 168419412
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 51 (23.7 bits)