RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2711
         (114 letters)



>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida,
           putidaredoxin [TaxId: 303]}
          Length = 106

 Score = 26.9 bits (59), Expect = 0.28
 Identities = 7/34 (20%), Positives = 12/34 (35%)

Query: 69  YIDPSGQRRTITYTAGKNGFQASGDDIPVAPPAP 102
           Y+   G RR +    G +  QA+  +        
Sbjct: 5   YVSHDGTRRELDVADGVSLMQAAVSNGIYDIVGD 38


>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus,
           ferredoxin VI [TaxId: 1061]}
          Length = 106

 Score = 26.9 bits (59), Expect = 0.31
 Identities = 7/34 (20%), Positives = 14/34 (41%)

Query: 69  YIDPSGQRRTITYTAGKNGFQASGDDIPVAPPAP 102
           +I+ +G R  +    G    +A+ D+      A 
Sbjct: 5   FIEHNGTRHEVEAKPGLTVMEAARDNGVPGIDAD 38


>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp.,
           terpredoxin [TaxId: 306]}
          Length = 105

 Score = 26.5 bits (58), Expect = 0.53
 Identities = 4/33 (12%), Positives = 11/33 (33%)

Query: 69  YIDPSGQRRTITYTAGKNGFQASGDDIPVAPPA 101
           +ID       +    G++  + +  +      A
Sbjct: 5   FIDEQSGEYAVDAQDGQSLMEVATQNGVPGIVA 37


>d2o6pa1 b.1.28.1 (A:29-150) Iron-regulated surface determinant
          protein C, IsdC {Staphylococcus aureus [TaxId: 1280]}
          Length = 122

 Score = 26.3 bits (58), Expect = 0.59
 Identities = 9/56 (16%), Positives = 20/56 (35%), Gaps = 3/56 (5%)

Query: 12 SLSVAQQYVKDPKEAAILSEKRYLS---NNGQFGSAYTQEDGVQFTEESDQDGNRR 64
            S+A  Y   P +    + K Y+    N+  + +  + E   +     +   + R
Sbjct: 17 DTSIANDYFNKPAKYIKKNGKLYVQITVNHSHWITGMSIEGHKENIISKNTAKDER 72


>d1h54a2 b.30.5.3 (A:1-268) Lactobacillus maltose phosphorylase,
          N-terminal domain {Lactobacillus brevis [TaxId: 1580]}
          Length = 268

 Score = 25.4 bits (55), Expect = 1.9
 Identities = 10/77 (12%), Positives = 20/77 (25%), Gaps = 7/77 (9%)

Query: 28 ILSEKRY-LSNNGQFGSAYTQEDGVQFT----EESDQDGNRRGAYSYIDPSGQRRTITYT 82
           +    +   +     S  +  +G        EE     + +G   Y+            
Sbjct: 11 NVITHTFDPKDKRLQESMTSLGNGYMGMRGDFEEGYSGDSLQG--IYLGGVWYPDKTRVG 68

Query: 83 AGKNGFQASGDDIPVAP 99
            KNG+      +  A 
Sbjct: 69 WWKNGYPKYFGKVVNAV 85


>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
          kandleri [TaxId: 2320]}
          Length = 265

 Score = 24.9 bits (54), Expect = 3.1
 Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 4/48 (8%)

Query: 52 QFTEESDQDGNRRGAYSYID----PSGQRRTITYTAGKNGFQASGDDI 95
          +F E +D+    RG   Y      P GQR+ ++Y          GDD+
Sbjct: 35 EFKEWADKIVEERGVPHYNPDIGVPLGQRKLMSYQVSGTDVFVEGDDL 82


>d2ihta2 c.36.1.5 (A:12-197) Carboxyethylarginine synthase
           {Streptomyces clavuligerus [TaxId: 1901]}
          Length = 186

 Score = 24.6 bits (52), Expect = 3.3
 Identities = 8/22 (36%), Positives = 9/22 (40%)

Query: 89  QASGDDIPVAPPAPPAPAPVAP 110
             S + I    P PPA  P  P
Sbjct: 162 LGSSEGIDTTVPNPPANTPAKP 183


>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon
          Methanobacterium thermoautotrophicum [TaxId: 145262]}
          Length = 268

 Score = 24.5 bits (53), Expect = 3.3
 Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 4/48 (8%)

Query: 52 QFTEESDQDGNRRGAYSYID----PSGQRRTITYTAGKNGFQASGDDI 95
          +F     +   +RG   Y      P GQR  + Y          GDD+
Sbjct: 38 EFVNAGKEVAAKRGIPQYNPDIGTPLGQRVLMPYQVSTTDTYVEGDDL 85


>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
           {Rhodopseudomonas palustris [TaxId: 1076]}
          Length = 130

 Score = 23.6 bits (51), Expect = 5.4
 Identities = 6/19 (31%), Positives = 7/19 (36%)

Query: 92  GDDIPVAPPAPPAPAPVAP 110
           GD    +P    APA    
Sbjct: 13  GDSAAASPGGAQAPATTGA 31



 Score = 22.8 bits (49), Expect = 9.5
 Identities = 9/29 (31%), Positives = 10/29 (34%)

Query: 83  AGKNGFQASGDDIPVAPPAPPAPAPVAPQ 111
           A   G   +      A  AP AP P A  
Sbjct: 17  AASPGGAQAPATTGAAGTAPTAPQPTAAP 45


>d1bb8a_ d.10.1.1 (A:) DNA-binding domain from tn916 integrase
          {Enterococcus faecalis [TaxId: 1351]}
          Length = 71

 Score = 22.9 bits (49), Expect = 6.2
 Identities = 7/21 (33%), Positives = 11/21 (52%)

Query: 59 QDGNRRGAYSYIDPSGQRRTI 79
          Q  + R  Y YID  G+ + +
Sbjct: 17 QRKDGRYLYKYIDSFGEPQFV 37


>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
          Methanosarcina barkeri [TaxId: 2208]}
          Length = 282

 Score = 23.8 bits (51), Expect = 6.6
 Identities = 12/51 (23%), Positives = 17/51 (33%), Gaps = 6/51 (11%)

Query: 51 VQFTEESDQDGNRRGAYSYID------PSGQRRTITYTAGKNGFQASGDDI 95
          V+  +   +   +RG   Y        P GQR    YT          DD+
Sbjct: 49 VEMIKAGKEIAEKRGIAFYNPMMHSGAPLGQRAITPYTISGTDIVCEPDDL 99


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0635    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 409,660
Number of extensions: 17282
Number of successful extensions: 53
Number of sequences better than 10.0: 1
Number of HSP's gapped: 50
Number of HSP's successfully gapped: 17
Length of query: 114
Length of database: 2,407,596
Length adjustment: 72
Effective length of query: 42
Effective length of database: 1,419,036
Effective search space: 59599512
Effective search space used: 59599512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.1 bits)