Query psy2712
Match_columns 602
No_of_seqs 150 out of 199
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 23:18:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2712.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2712hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525|consensus 100.0 3E-43 6.4E-48 414.2 27.5 448 48-514 597-1071(1266)
2 KOG2171|consensus 97.7 0.0035 7.7E-08 74.8 21.7 307 4-379 90-410 (1075)
3 KOG1525|consensus 96.4 0.0026 5.5E-08 78.0 4.5 110 2-118 345-471 (1266)
4 PTZ00429 beta-adaptin; Provisi 96.4 0.69 1.5E-05 54.9 24.1 303 84-420 194-539 (746)
5 KOG1824|consensus 96.4 0.16 3.4E-06 60.4 17.8 270 85-401 102-412 (1233)
6 PF01602 Adaptin_N: Adaptin N 96.0 0.11 2.3E-06 57.9 14.2 259 88-417 61-323 (526)
7 KOG2171|consensus 95.6 0.59 1.3E-05 56.6 18.5 282 2-339 257-595 (1075)
8 PTZ00429 beta-adaptin; Provisi 95.6 1.2 2.7E-05 52.8 21.1 127 84-237 312-438 (746)
9 COG5240 SEC21 Vesicle coat com 94.8 4.7 0.0001 46.4 21.3 212 85-377 319-545 (898)
10 KOG0414|consensus 94.8 4.4 9.4E-05 49.8 22.3 375 18-450 629-1110(1251)
11 PLN03200 cellulose synthase-in 93.6 4.3 9.3E-05 53.1 20.3 191 52-298 442-642 (2102)
12 KOG1242|consensus 92.3 2.1 4.6E-05 49.0 13.6 250 104-422 170-439 (569)
13 KOG1824|consensus 92.2 16 0.00035 44.3 20.7 117 2-133 578-718 (1233)
14 PF01602 Adaptin_N: Adaptin N 91.8 16 0.00035 40.6 19.9 237 85-389 168-408 (526)
15 PF12717 Cnd1: non-SMC mitotic 90.5 3.5 7.6E-05 40.0 11.5 148 333-494 3-159 (178)
16 cd00020 ARM Armadillo/beta-cat 90.2 0.64 1.4E-05 40.3 5.6 106 57-176 8-116 (120)
17 KOG2259|consensus 87.1 39 0.00085 39.7 18.1 236 144-417 191-465 (823)
18 PRK09687 putative lyase; Provi 82.5 68 0.0015 33.7 20.2 192 109-383 24-217 (280)
19 PF05918 API5: Apoptosis inhib 81.1 1.2E+02 0.0025 35.4 24.3 297 109-473 24-346 (556)
20 PF10508 Proteasom_PSMB: Prote 80.3 24 0.00052 40.1 13.2 193 85-316 54-254 (503)
21 PLN03200 cellulose synthase-in 80.2 6.2 0.00013 51.7 9.1 117 52-182 647-766 (2102)
22 PF12719 Cnd3: Nuclear condens 79.6 79 0.0017 33.2 16.0 148 280-448 42-213 (298)
23 KOG2259|consensus 78.8 1.5E+02 0.0032 35.2 18.6 238 99-379 187-467 (823)
24 PF12348 CLASP_N: CLASP N term 78.7 30 0.00065 34.2 12.0 189 5-236 18-210 (228)
25 PF05004 IFRD: Interferon-rela 78.3 1E+02 0.0022 33.0 19.1 116 112-237 47-165 (309)
26 PF10508 Proteasom_PSMB: Prote 77.7 26 0.00056 39.8 12.4 137 85-237 93-235 (503)
27 PF12755 Vac14_Fab1_bd: Vacuol 77.6 11 0.00024 33.5 7.5 49 332-382 41-94 (97)
28 KOG1061|consensus 76.8 38 0.00082 40.2 13.4 221 84-377 294-518 (734)
29 KOG2023|consensus 76.8 18 0.00038 42.5 10.5 132 107-252 127-263 (885)
30 KOG1060|consensus 76.5 1.9E+02 0.004 35.1 20.3 237 9-315 134-402 (968)
31 KOG1020|consensus 73.8 2.8E+02 0.0061 36.0 21.0 245 32-316 994-1275(1692)
32 cd00020 ARM Armadillo/beta-cat 73.7 15 0.00032 31.5 7.3 72 109-182 8-80 (120)
33 PF12717 Cnd1: non-SMC mitotic 72.0 41 0.0009 32.5 10.7 87 87-181 6-93 (178)
34 PF13646 HEAT_2: HEAT repeats; 71.5 16 0.00034 30.3 6.6 86 58-175 1-87 (88)
35 KOG1078|consensus 70.7 2.5E+02 0.0054 34.0 18.3 233 88-377 264-522 (865)
36 PF04826 Arm_2: Armadillo-like 68.8 1.2E+02 0.0025 31.7 13.6 112 107-231 11-123 (254)
37 PF01347 Vitellogenin_N: Lipop 68.6 1.1E+02 0.0025 35.1 15.0 60 304-382 557-617 (618)
38 PF05804 KAP: Kinesin-associat 68.1 56 0.0012 39.0 12.4 158 43-234 359-519 (708)
39 KOG2023|consensus 68.0 2.2E+02 0.0049 33.9 16.5 168 53-242 386-556 (885)
40 KOG0413|consensus 67.9 51 0.0011 40.4 11.7 141 282-490 948-1088(1529)
41 PF08167 RIX1: rRNA processing 67.7 35 0.00076 32.9 9.0 140 54-252 19-162 (165)
42 PF13646 HEAT_2: HEAT repeats; 67.3 16 0.00035 30.1 5.9 55 110-176 1-56 (88)
43 PF14500 MMS19_N: Dos2-interac 65.9 1.2E+02 0.0027 31.6 13.2 125 5-136 10-152 (262)
44 KOG1241|consensus 64.1 3.3E+02 0.0071 33.0 22.5 137 164-316 461-607 (859)
45 PF12348 CLASP_N: CLASP N term 63.6 22 0.00047 35.2 7.0 96 83-181 108-210 (228)
46 PRK09687 putative lyase; Provi 62.1 96 0.0021 32.6 11.7 18 106-123 157-174 (280)
47 PRK13800 putative oxidoreducta 59.4 4.1E+02 0.0089 32.6 23.1 70 333-419 822-891 (897)
48 KOG0166|consensus 53.8 2.4E+02 0.0052 32.6 13.6 266 56-378 109-384 (514)
49 KOG1059|consensus 53.5 4.8E+02 0.01 31.5 25.5 217 84-362 196-416 (877)
50 PF05804 KAP: Kinesin-associat 52.7 29 0.00063 41.3 6.5 263 89-389 269-545 (708)
51 KOG1061|consensus 49.2 2.1E+02 0.0045 34.3 12.5 75 87-161 139-216 (734)
52 KOG0220|consensus 48.5 2.5E+02 0.0055 33.7 12.8 186 128-319 643-844 (867)
53 cd03569 VHS_Hrs_Vps27p VHS dom 46.4 78 0.0017 30.0 7.2 69 55-136 40-113 (142)
54 KOG0168|consensus 46.1 1.4E+02 0.0031 36.3 10.5 220 15-260 213-440 (1051)
55 PF13764 E3_UbLigase_R4: E3 ub 43.7 5.2E+02 0.011 31.6 15.0 145 151-313 229-384 (802)
56 KOG3685|consensus 43.5 1.1E+02 0.0024 37.0 9.0 115 351-468 796-927 (1338)
57 KOG4224|consensus 41.2 4.1E+02 0.0088 29.8 12.3 226 102-382 202-441 (550)
58 cd03568 VHS_STAM VHS domain fa 40.6 41 0.0009 32.0 4.4 69 55-136 36-109 (144)
59 KOG1059|consensus 40.6 4E+02 0.0086 32.2 12.8 118 4-136 191-327 (877)
60 KOG1060|consensus 39.4 2.7E+02 0.0058 33.9 11.3 187 9-234 336-532 (968)
61 smart00638 LPD_N Lipoprotein N 38.8 6.5E+02 0.014 28.8 23.4 59 305-382 514-573 (574)
62 KOG0946|consensus 37.1 4.3E+02 0.0092 32.3 12.5 306 56-408 22-397 (970)
63 PF14664 RICTOR_N: Rapamycin-i 37.0 36 0.00078 37.3 3.9 92 31-136 84-175 (371)
64 cd03561 VHS VHS domain family; 34.0 52 0.0011 30.5 3.9 54 83-136 51-111 (133)
65 COG5240 SEC21 Vesicle coat com 31.9 3.2E+02 0.007 32.2 10.2 133 85-242 391-526 (898)
66 PF07571 DUF1546: Protein of u 30.2 93 0.002 27.3 4.6 64 329-412 17-80 (92)
67 PF13513 HEAT_EZ: HEAT-like re 29.6 49 0.0011 25.3 2.5 50 333-382 2-52 (55)
68 PF12755 Vac14_Fab1_bd: Vacuol 29.3 2E+02 0.0043 25.5 6.6 82 93-177 10-93 (97)
69 PF11333 DUF3135: Protein of u 29.2 1.7E+02 0.0036 25.5 5.9 66 224-311 6-72 (83)
70 KOG1118|consensus 28.4 8.1E+02 0.017 26.7 14.8 153 235-422 25-186 (366)
71 PF02985 HEAT: HEAT repeat; I 28.4 1.1E+02 0.0024 20.9 3.9 25 362-386 4-28 (31)
72 PF05734 DUF832: Herpesvirus p 26.4 7.4E+02 0.016 25.6 11.9 116 326-449 63-191 (228)
73 KOG1248|consensus 26.0 1.5E+03 0.032 29.0 20.8 312 48-417 559-888 (1176)
74 KOG1062|consensus 25.8 1.3E+03 0.028 28.3 22.8 311 121-519 120-460 (866)
75 cd03567 VHS_GGA VHS domain fam 25.5 97 0.0021 29.4 4.2 69 55-136 37-115 (139)
76 PF11417 Inhibitor_G39P: Loade 25.3 1.9E+02 0.0041 24.4 5.4 52 87-138 4-61 (71)
77 COG5096 Vesicle coat complex, 25.0 2.4E+02 0.0052 34.1 8.1 83 88-180 74-156 (757)
78 PF14664 RICTOR_N: Rapamycin-i 24.5 2.3E+02 0.0049 31.2 7.4 97 82-183 81-179 (371)
79 PF08389 Xpo1: Exportin 1-like 24.5 92 0.002 28.1 3.8 144 9-175 3-148 (148)
80 PF07159 DUF1394: Protein of u 23.9 2.2E+02 0.0048 30.7 6.9 64 431-494 85-154 (303)
81 KOG1949|consensus 23.3 1.4E+02 0.003 35.8 5.6 110 330-441 186-311 (1005)
82 PF00790 VHS: VHS domain; Int 22.5 56 0.0012 30.5 1.9 55 82-136 55-117 (140)
83 KOG0212|consensus 22.5 3.8E+02 0.0081 31.5 8.6 132 85-241 352-489 (675)
84 smart00288 VHS Domain present 22.3 1.2E+02 0.0026 28.2 4.1 54 83-136 51-110 (133)
85 PRK13800 putative oxidoreducta 21.8 5E+02 0.011 31.9 10.3 18 4-21 724-741 (897)
86 PF13001 Ecm29: Proteasome sta 21.7 3E+02 0.0064 31.4 7.9 173 35-254 224-423 (501)
87 PF05536 Neurochondrin: Neuroc 21.6 1E+03 0.022 27.5 12.3 93 81-177 69-165 (543)
88 KOG1240|consensus 20.9 3.6E+02 0.0077 34.4 8.5 86 333-448 438-524 (1431)
89 KOG2973|consensus 20.2 3.4E+02 0.0073 29.6 7.3 87 109-213 4-91 (353)
No 1
>KOG1525|consensus
Probab=100.00 E-value=3e-43 Score=414.23 Aligned_cols=448 Identities=29% Similarity=0.445 Sum_probs=390.7
Q ss_pred cccccccc-CcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchH
Q psy2712 48 VMPHRLTG-NAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAP 126 (602)
Q Consensus 48 ~spl~~N~-ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e 126 (602)
.-|+.++. +++..+++....++.+.......++..+.+...+..||.++|.++|.+|..++.+..+...+..++..+.+
T Consensus 597 I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~ 676 (1266)
T KOG1525|consen 597 IAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAP 676 (1266)
T ss_pred hcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhH
Confidence 45577888 88899998888777666656667777888999999999999999999999999999999888877788889
Q ss_pred HHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHH
Q psy2712 127 LVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDIL 206 (602)
Q Consensus 127 ~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 206 (602)
.+|+.+-+.| ++.....|...+.+.+.++.++..|+|.|||+|.+|+.++.+.+.. ++..+|.++.
T Consensus 677 ~vLk~~~~~~--~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~~~------------~l~q~~~~~~ 742 (1266)
T KOG1525|consen 677 VVLKKLESQG--KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSKFC------------KLKQTFEEIK 742 (1266)
T ss_pred HHHHHHHhcc--ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhhhh------------HHHHHhhhhH
Confidence 9999999998 4444557777888999999999999999999999999887776521 1257788888
Q ss_pred HHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccc-cCCCCccCCC-CCHHHHHHHH
Q psy2712 207 DKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQ-YKKDWVFEED-LPNEVRCKME 284 (602)
Q Consensus 207 e~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~-~~~~W~~d~~-l~~e~~aKi~ 284 (602)
+.+...+....+++.+++++||+|++..|..|.++.+..+..||+|++++.+..+++. ....|++.+. +++.+.+|+.
T Consensus 743 d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~~e~~~~~~~~P~~~~~~p~~~~k~~ 822 (1266)
T KOG1525|consen 743 DNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSPGEKNKSKEWLPSDKLLSPNTSLKVL 822 (1266)
T ss_pred HHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCccccccCccccCCcccccchhhhhHHH
Confidence 8887777777889999999999999999999999999989999999999888888875 4478999555 4999999999
Q ss_pred HHHHHHHHhhcccchh---h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHH
Q psy2712 285 GMKMMARWLLGLKAHK---E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQF 360 (602)
Q Consensus 285 aLK~lvn~Ll~~~~~~---~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f 360 (602)
++|++++||++...+. + .+...+++|..++.+.|++..+..+|..+++|||+.|+++++|+|..+.|.+++++++|
T Consensus 823 a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl~~~~~~~e~~~~~~~ 902 (1266)
T KOG1525|consen 823 AIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKLASEKSYHEFINAEQY 902 (1266)
T ss_pred HHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeecccccchhccCCHHHH
Confidence 9999999999998764 2 22226779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHHHH-------HHH-----------
Q psy2712 361 YNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTE-------KAL----------- 422 (602)
Q Consensus 361 ~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~v~-------~~~----------- 422 (602)
..++++++|++++||..|+.||++++.+.+ +|..||+.++|++.++..+...... .|.
T Consensus 903 ~~~~~~i~de~~~vR~~f~~kl~k~l~~i~----lp~~~~a~~~l~~~d~~~~~~~~~~~~~t~~~~~~r~~t~~e~~~s 978 (1266)
T KOG1525|consen 903 EKLILLISDECLQVRLVFLLKLHKGLSRIK----LPLEYMAKFKLCAPDVSKELLANKREEETKNSASRREQTKFERATS 978 (1266)
T ss_pred HHHHHHhcCCchhHHHHHHHHccccccccc----cchhhhhHHHHhccchhhhhhhHHHHhhhhcchhhhhhhhhhhccC
Confidence 999999999999999999999999999888 9999999999999998887665511 111
Q ss_pred HcCCCCCchhHHHHHhhhccCCCCCCCcccHHHHHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHhhhccCCCCCCCc
Q psy2712 423 AQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDDE 502 (602)
Q Consensus 423 ~~~~~~~pEy~L~rLIhLLAHHPDF~~~~d~~~L~~~~~yL~FyLe~lat~~~eN~sl~f~~~i~erIKq~rDa~~~~~~ 502 (602)
.....+.|||+.+|.+|++||||+|.+.++++.|..+.+|+||.++.+..+ .+|+..-++..+.+.+++.+|..+|++.
T Consensus 979 ~~~~~~~~e~V~~~~~~~la~d~~~~~~edv~~l~~~ke~~~~vl~~l~~~-~~n~~~~~~~~~~~~~~~~~d~~s~~d~ 1057 (1266)
T KOG1525|consen 979 DGTLAHLPEYVGSYVIHLLAHDPDFVKAEDVDSLSDLKECLWFVLEDLDEE-NENNQHKFWKREKEEIKGSEDEESPDDV 1057 (1266)
T ss_pred chhhhhhhHHhhhhhhhhhccCccccccchhhhHHHHHHhHHHHHhhhhhh-hccchhHHHHHHHhhhhcchhhcCCccc
Confidence 122457799999999999999999999988999999999999999999998 7899888999999999999999998887
Q ss_pred chhh--HHhhcccC
Q psy2712 503 NTNN--VSALDLNG 514 (602)
Q Consensus 503 ~~n~--~~lsDl~~ 514 (602)
..|+ |.+||+++
T Consensus 1058 ~~~~kl~~l~d~a~ 1071 (1266)
T KOG1525|consen 1058 GDNIKLYTLCDLAQ 1071 (1266)
T ss_pred CCCceeeeHHhHHH
Confidence 6654 56899998
No 2
>KOG2171|consensus
Probab=97.70 E-value=0.0035 Score=74.85 Aligned_cols=307 Identities=20% Similarity=0.191 Sum_probs=187.1
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCC
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPG 83 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~ 83 (602)
|-++..|||.+-..|-+.||.+++. +-++|+.|+.+ |..+. +.
T Consensus 90 ~E~~~~vr~k~~dviAeia~~~l~e--~WPell~~L~q--------------------------~~~S~---------~~ 132 (1075)
T KOG2171|consen 90 SETEPSVRHKLADVIAEIARNDLPE--KWPELLQFLFQ--------------------------STKSP---------NP 132 (1075)
T ss_pred hccchHHHHHHHHHHHHHHHhcccc--chHHHHHHHHH--------------------------HhcCC---------Cc
Confidence 6688899999999999999999887 46777777733 21111 45
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhccc--CC--ccchHHHHHHHHhhccCCC-CchhhhhH---HhHHHHH
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTI--ED--EIVAPLVFSVLSFLGKYRP-LGEVFKEE---MKQLVPI 155 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~--~d--~~v~e~~Lk~La~~~k~k~-~~~~~p~~---~~~l~~~ 155 (602)
+..+.|..+|..+...++.-|++ |+++|..++.. .| ..|--.+++++..++.+-. .....+.. --+++..
T Consensus 133 ~~rE~al~il~s~~~~~~~~~~~--~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~v 210 (1075)
T KOG2171|consen 133 SLRESALLILSSLPETFGNTLQP--HLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNV 210 (1075)
T ss_pred chhHHHHHHHHhhhhhhccccch--hHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHH
Confidence 68899999999999999999999 99999988852 22 2244457888888875531 11222221 1234557
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhh---cCCCCCCCcchHHHHHHHHHH
Q psy2712 156 CQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKM---NLTPDSPNYRTAIIALGHIAY 232 (602)
Q Consensus 156 Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~---~L~~~s~~l~t~L~sLg~Ia~ 232 (602)
|......|.-..||.+..+|.-+..... .-...++.+|++-... +=+.+++-=..+|..|-.+++
T Consensus 211 l~~~i~~~d~~~a~~~l~~l~El~e~~p------------k~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e 278 (1075)
T KOG2171|consen 211 LQEVIQDGDDDAAKSALEALIELLESEP------------KLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSE 278 (1075)
T ss_pred hHhhhhccchHHHHHHHHHHHHHHhhch------------HHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHH
Confidence 7788888999999999999865544321 1224556666654322 223333223346777778888
Q ss_pred hCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHH--HHHHHHHHHHHHHhhcccchhhhHHHHHHHH
Q psy2712 233 NMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEV--RCKMEGMKMMARWLLGLKAHKESAQKTFRML 310 (602)
Q Consensus 233 ~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~--~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL 310 (602)
++|........ . ...|+-.+| ...++...+ .+|...++++++. --+..|...+-+--+++... ...-++|..+
T Consensus 279 ~Ap~~~k~~~~-~-~~~lv~~~l-~~mte~~~D-~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~-~v~p~~~~~l 353 (1075)
T KOG2171|consen 279 YAPAMCKKLAL-L-GHTLVPVLL-AMMTEEEDD-DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGK-QVLPPLFEAL 353 (1075)
T ss_pred hhHHHhhhchh-h-hccHHHHHH-HhcCCcccc-hhhccccccccccccCcHHHHHHHHHHHHhcCChh-hehHHHHHHH
Confidence 88765443332 1 222222233 222222222 7899877676544 45677777777766666533 3678888888
Q ss_pred HHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhccc-CcCCcCCHHHHHHHHHHHhcCchHHHHHHH
Q psy2712 311 NAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQK-GVGDQYSPEQFYNLSRLLIDEVPEVREIFA 379 (602)
Q Consensus 311 ~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~-~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl 379 (602)
-.++.+. + .. .|-+|=.++=-++.-- .+-...-+..+.-....++|+.|.||..=+
T Consensus 354 ~~~l~S~-----~---w~-----~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~ 410 (1075)
T KOG2171|consen 354 EAMLQST-----E---WK-----ERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAAL 410 (1075)
T ss_pred HHHhcCC-----C---HH-----HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence 8888441 1 11 2222222222222210 011122234555666788899999998733
No 3
>KOG1525|consensus
Probab=96.45 E-value=0.0026 Score=77.95 Aligned_cols=110 Identities=28% Similarity=0.317 Sum_probs=75.5
Q ss_pred CCCCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHh-hhhcCCCCcccccCC
Q psy2712 2 RQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYV-DDCLNHGNLIDELGL 80 (602)
Q Consensus 2 r~~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v-~~~~~g~~~~ee~~~ 80 (602)
|.||+||.||+++++.|+.++.++|.++...+ ||++|+||++|||+.....-..-...|.+.+ ..+..|+..+.+
T Consensus 345 ~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~~~~~k~~t~--- 420 (1266)
T KOG1525|consen 345 RERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLRSAGGKEITP--- 420 (1266)
T ss_pred HhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhccCcccccc---
Confidence 67999999999999999999999999888777 9999999999999998877666666666642 222244442111
Q ss_pred CCCchhHHHHHHHHHH----------------HhhCCCCCCCchHHHHHHHhcc
Q psy2712 81 HPGTAGERGLKLLVML----------------SYVYPCHFMQQSSIQALLKMLT 118 (602)
Q Consensus 81 ~~~~~~~~a~eLL~~I----------------S~~~P~lFk~~e~~~~L~~ll~ 118 (602)
.....--+||..+ ..-+|.-+..++-++.|..++.
T Consensus 421 ---~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~ 471 (1266)
T KOG1525|consen 421 ---PFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLA 471 (1266)
T ss_pred ---cccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHh
Confidence 1111122333333 3346777777777777776665
No 4
>PTZ00429 beta-adaptin; Provisional
Probab=96.42 E-value=0.69 Score=54.92 Aligned_cols=303 Identities=12% Similarity=0.092 Sum_probs=159.3
Q ss_pred chhHHHHHHHHHHHhhCCCCCCC-chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQ-QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~-~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
.-...|..+|..|....|..|.- ..++..|...+.+-++-.--.+|++|+. |.+ ..-. ....++..+...-..
T Consensus 194 ~Vv~nAl~aL~eI~~~~~~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~---y~P--~~~~-e~~~il~~l~~~Lq~ 267 (746)
T PTZ00429 194 VVASNAAAIVCEVNDYGSEKIESSNEWVNRLVYHLPECNEWGQLYILELLAA---QRP--SDKE-SAETLLTRVLPRMSH 267 (746)
T ss_pred cHHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHh---cCC--CCcH-HHHHHHHHHHHHhcC
Confidence 46677889999998888876633 4477777777765444332336777754 333 2122 223456666666667
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhc---CCCCC-CCcchHHHHHHHHHHhCCCCc
Q psy2712 163 GTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMN---LTPDS-PNYRTAIIALGHIAYNMPNKF 238 (602)
Q Consensus 163 GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~---L~~~s-~~l~t~L~sLg~Ia~~aP~~f 238 (602)
.+|.-.=-|+++++.+..... ......++.++..+ |..++ +---..|..|-.|....|.+|
T Consensus 268 ~N~AVVl~Aik~il~l~~~~~---------------~~~~~~~~~rl~~pLv~L~ss~~eiqyvaLr~I~~i~~~~P~lf 332 (746)
T PTZ00429 268 QNPAVVMGAIKVVANLASRCS---------------QELIERCTVRVNTALLTLSRRDAETQYIVCKNIHALLVIFPNLL 332 (746)
T ss_pred CCHHHHHHHHHHHHHhcCcCC---------------HHHHHHHHHHHHHHHHHhhCCCccHHHHHHHHHHHHHHHCHHHH
Confidence 788777788898876654321 12334444444333 22222 233456777888888899998
Q ss_pred hhhHHHH---------HHHHHHHHHhcc---CCcccc--ccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHH
Q psy2712 239 PAVIKNT---------VSRKIVKELLIK---ETEESY--QYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQ 304 (602)
Q Consensus 239 e~~~~~i---------I~~fIvk~lLl~---~~~~~~--~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~ 304 (602)
..+.+.+ |...-+ ++|.. +..... .+-.+++.+ .+.+ -+..++|.+.+...... ..+.
T Consensus 333 ~~~~~~Ff~~~~Dp~yIK~~KL-eIL~~Lane~Nv~~IL~EL~eYa~d--~D~e--f~r~aIrAIg~lA~k~~---~~a~ 404 (746)
T PTZ00429 333 RTNLDSFYVRYSDPPFVKLEKL-RLLLKLVTPSVAPEILKELAEYASG--VDMV--FVVEVVRAIASLAIKVD---SVAP 404 (746)
T ss_pred HHHHHhhhcccCCcHHHHHHHH-HHHHHHcCcccHHHHHHHHHHHhhc--CCHH--HHHHHHHHHHHHHHhCh---HHHH
Confidence 8876443 111111 12221 111111 011234443 2323 34556666666544332 3567
Q ss_pred HHHHHHHHHHhhcCcccCCC---------CCCHHHHHHHHHH------------HHHHHhhhhcccCcCCcCC--HHHHH
Q psy2712 305 KTFRMLNAVIVNKGDLLQSD---------KMSKQEMAWMRLS------------AGCAMLKICEQKGVGDQYS--PEQFY 361 (602)
Q Consensus 305 ~v~kLL~~lL~~~Gel~~~~---------~t~~~~ksrLRL~------------Aa~~lLKLA~~~~~~~~I~--~~~f~ 361 (602)
.++..|..++..++++..+. ..|..+. --+|. |=.+++=+-- .|.+.|. ++.+.
T Consensus 405 ~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~~i-l~~L~~~~~~~~i~e~~AKaaiiWILG--Ey~~~I~~a~~~L~ 481 (746)
T PTZ00429 405 DCANLLLQIVDRRPELLPQVVTAAKDIVRKYPELLM-LDTLVTDYGADEVVEEEAKVSLLWMLG--EYCDFIENGKDIIQ 481 (746)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccHHH-HHHHHHhhcccccccHHHHHHHHHHHH--hhHhhHhhHHHHHH
Confidence 77777778887666654220 1222110 00111 1112222221 2333331 22333
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhc-cccchHHhHHHHHH
Q psy2712 362 NLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALG-GLEEEKKLKMSTEK 420 (602)
Q Consensus 362 ~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~-A~EPd~elk~~v~~ 420 (602)
.+.....++..+||-..+.-..|...+. |+.+ .....-++..+ -.+.++++|++.-.
T Consensus 482 ~~i~~f~~E~~~VqlqlLta~vKlfl~~-p~~~-~~~l~~vL~~~t~~~~d~DVRDRA~~ 539 (746)
T PTZ00429 482 RFIDTIMEHEQRVQLAILSAAVKMFLRD-PQGM-EPQLNRVLETVTTHSDDPDVRDRAFA 539 (746)
T ss_pred HHHhhhccCCHHHHHHHHHHHHHHHhcC-cHHH-HHHHHHHHHHHHhcCCChhHHHHHHH
Confidence 4555557789999999998888877653 2211 12233344333 45688899998543
No 5
>KOG1824|consensus
Probab=96.36 E-value=0.16 Score=60.39 Aligned_cols=270 Identities=14% Similarity=0.203 Sum_probs=162.3
Q ss_pred hhHHHHHHHHHHHhhCCCCCC--CchHHHHHHHhcc-----cC--CccchHHHHHHHHhh-ccCCCCchhhhhHHhHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPCHFM--QQSSIQALLKMLT-----IE--DEIVAPLVFSVLSFL-GKYRPLGEVFKEEMKQLVP 154 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk--~~e~~~~L~~ll~-----~~--d~~v~e~~Lk~La~~-~k~k~~~~~~p~~~~~l~~ 154 (602)
.--++..|..+|+..-|..=+ ....++.++..+. .+ .....+ +|-+++-+ .+|. +..|.+...+..
T Consensus 102 rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e-~lDil~d~lsr~g---~ll~~fh~~il~ 177 (1233)
T KOG1824|consen 102 RDISSIGLKTVIANLPPSSSSFLAATVCKRITPKLKQAISKQEDVSAIKCE-VLDILADVLSRFG---TLLPNFHLSILK 177 (1233)
T ss_pred ccHHHHHHHHHHhcCCCccccccccHHHHHHHHHHHHHhhhcccchhhHHH-HHHHHHHHHHhhc---ccCcchHHHHHH
Confidence 334688899999999983322 2456666555553 12 234445 77777744 3332 334433333332
Q ss_pred HHHHHHhcCCHHHH--HHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC--CCCCcchHHHHHHHH
Q psy2712 155 ICQDMIEKGTPKQA--KQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP--DSPNYRTAIIALGHI 230 (602)
Q Consensus 155 ~Lk~~al~GtP~qA--K~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~--~s~~l~t~L~sLg~I 230 (602)
.| ++.-++|++| |-|+-+|..++.... ...+.++++.+.+.|.. ......|.++.||.|
T Consensus 178 ~l--~~ql~s~R~aVrKkai~~l~~la~~~~---------------~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i 240 (1233)
T KOG1824|consen 178 CL--LPQLQSPRLAVRKKAITALGHLASSCN---------------RDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAI 240 (1233)
T ss_pred HH--hhcccChHHHHHHHHHHHHHHHHHhcC---------------HHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHH
Confidence 22 4566888766 888888854433322 46788999999999944 334688999999999
Q ss_pred HHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHH-HHHHHHHHHHhhcccchh-hhHHHHHH
Q psy2712 231 AYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCK-MEGMKMMARWLLGLKAHK-ESAQKTFR 308 (602)
Q Consensus 231 a~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aK-i~aLK~lvn~Ll~~~~~~-~~a~~v~k 308 (602)
++-+..-|..|... |+-++++-. ... ++-++|.+.+ +.|+-.|..|| ..+. .....++.
T Consensus 241 ~r~ag~r~~~h~~~-ivp~v~~y~-~~~--------------e~~dDELrE~~lQale~fl~rc---p~ei~p~~pei~~ 301 (1233)
T KOG1824|consen 241 CRQAGHRFGSHLDK-IVPLVADYC-NKI--------------EEDDDELREYCLQALESFLRRC---PKEILPHVPEIIN 301 (1233)
T ss_pred HHHhcchhhcccch-hhHHHHHHh-ccc--------------ccCcHHHHHHHHHHHHHHHHhC---hhhhcccchHHHH
Confidence 99999999999976 666664421 110 1113344433 44666666664 3332 44556666
Q ss_pred HHHHHHhhcCccc------------------C--CCCCCHHHHHH-HHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHH-
Q psy2712 309 MLNAVIVNKGDLL------------------Q--SDKMSKQEMAW-MRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRL- 366 (602)
Q Consensus 309 LL~~lL~~~Gel~------------------~--~~~t~~~~ksr-LRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~l- 366 (602)
++..-|.-+-... + ..=+-+.++|| .|=+||+|+.-+-..+ ...-|..++.++-.
T Consensus 302 l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR---~E~L~~~~q~l~p~l 378 (1233)
T KOG1824|consen 302 LCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSR---LEMLPDFYQTLGPAL 378 (1233)
T ss_pred HHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhcc---HHHHHHHHHHhCHHH
Confidence 6666663221111 1 00123567886 7999999998876542 33445556666543
Q ss_pred ---HhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHH
Q psy2712 367 ---LIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMG 401 (602)
Q Consensus 367 ---vqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~ 401 (602)
..+....||..-+.-....|..-+ ....+++
T Consensus 379 I~RfkEREEnVk~dvf~~yi~ll~qt~----~~~~~~~ 412 (1233)
T KOG1824|consen 379 ISRFKEREENVKADVFHAYIALLKQTR----PVIEVLA 412 (1233)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHcCC----CCccccc
Confidence 346777888877777777776555 5666654
No 6
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=96.02 E-value=0.11 Score=57.89 Aligned_cols=259 Identities=19% Similarity=0.216 Sum_probs=155.1
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHH
Q psy2712 88 RGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQ 167 (602)
Q Consensus 88 ~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q 167 (602)
.+-=.+..+....|+++.- .+..|.+-+..+++.+.-.+|++++.++ .|.....+.+.+.+.....+|--
T Consensus 61 l~yl~l~~~~~~~~~~~~l--~~n~l~kdl~~~n~~~~~lAL~~l~~i~--------~~~~~~~l~~~v~~ll~~~~~~V 130 (526)
T PF01602_consen 61 LGYLYLSLYLHEDPELLIL--IINSLQKDLNSPNPYIRGLALRTLSNIR--------TPEMAEPLIPDVIKLLSDPSPYV 130 (526)
T ss_dssp HHHHHHHHHTTTSHHHHHH--HHHHHHHHHCSSSHHHHHHHHHHHHHH---------SHHHHHHHHHHHHHHHHSSSHHH
T ss_pred HHHHHHHHHhhcchhHHHH--HHHHHHHhhcCCCHHHHHHHHhhhhhhc--------ccchhhHHHHHHHHHhcCCchHH
Confidence 3444455666666665555 6677777667778888888999999998 33344568889999999999976
Q ss_pred HHHHHHHHHHhcCCCcccccccccccCccchhhHHHH-HHHHHhhcCCCCCC-CcchHHHHHHHHHHhCCCCchhhHHHH
Q psy2712 168 AKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVD-ILDKVKMNLTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNT 245 (602)
Q Consensus 168 AK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~-Iie~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~~fe~~~~~i 245 (602)
=|-|+-++..+..... ..+.. +++.+..-|...++ -..+++.++.+| +..|+.+..-...
T Consensus 131 Rk~A~~~l~~i~~~~p----------------~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~- 192 (526)
T PF01602_consen 131 RKKAALALLKIYRKDP----------------DLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPK- 192 (526)
T ss_dssp HHHHHHHHHHHHHHCH----------------CCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHH-
T ss_pred HHHHHHHHHHHhccCH----------------HHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHH-
Confidence 6777777766554332 11222 45555444533332 233456666666 4445444422222
Q ss_pred HHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHhhcCcccCC
Q psy2712 246 VSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESA--QKTFRMLNAVIVNKGDLLQS 323 (602)
Q Consensus 246 I~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a--~~v~kLL~~lL~~~Gel~~~ 323 (602)
+.+.+ .+++ . ....| .++..++++.+...... ... ..++..+..++.
T Consensus 193 ~~~~L-~~~l---~-----~~~~~-----------~q~~il~~l~~~~~~~~---~~~~~~~~i~~l~~~l~-------- 241 (526)
T PF01602_consen 193 LIRIL-CQLL---S-----DPDPW-----------LQIKILRLLRRYAPMEP---EDADKNRIIEPLLNLLQ-------- 241 (526)
T ss_dssp HHHHH-HHHH---T-----CCSHH-----------HHHHHHHHHTTSTSSSH---HHHHHHHHHHHHHHHHH--------
T ss_pred HHHHh-hhcc---c-----ccchH-----------HHHHHHHHHHhcccCCh---hhhhHHHHHHHHHHHhh--------
Confidence 22222 2233 0 11233 24566777765543222 222 556777777765
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHH
Q psy2712 324 DKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFY 403 (602)
Q Consensus 324 ~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~ 403 (602)
.--.-.++.|..+++++...+. +-..-...|..++.++.++||-..+..|........ ..+-..+. .+
T Consensus 242 -----s~~~~V~~e~~~~i~~l~~~~~----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~--~~v~~~~~-~~ 309 (526)
T PF01602_consen 242 -----SSSPSVVYEAIRLIIKLSPSPE----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNP--PAVFNQSL-IL 309 (526)
T ss_dssp -----HHHHHHHHHHHHHHHHHSSSHH----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCH--HHHGTHHH-HH
T ss_pred -----ccccHHHHHHHHHHHHhhcchH----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccc--hhhhhhhh-hh
Confidence 2334567999999999887543 222356677788889999999999999988877641 11222222 23
Q ss_pred hhccccchHHhHHH
Q psy2712 404 ALGGLEEEKKLKMS 417 (602)
Q Consensus 404 fL~A~EPd~elk~~ 417 (602)
|+.-++++..+|..
T Consensus 310 ~~l~~~~d~~Ir~~ 323 (526)
T PF01602_consen 310 FFLLYDDDPSIRKK 323 (526)
T ss_dssp HHHHCSSSHHHHHH
T ss_pred heecCCCChhHHHH
Confidence 34445778888877
No 7
>KOG2171|consensus
Probab=95.58 E-value=0.59 Score=56.63 Aligned_cols=282 Identities=16% Similarity=0.157 Sum_probs=149.7
Q ss_pred CCCCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCC---Cccccc
Q psy2712 2 RQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHG---NLIDEL 78 (602)
Q Consensus 2 r~~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~---~~~ee~ 78 (602)
+..+.|+.+||-.+..|+..++- . =...||.+| |=..-++.++...-+-. ++ ...|+.
T Consensus 257 ~n~~l~~~~R~~ALe~ivs~~e~----A------------p~~~k~~~~--~~~~lv~~~l~~mte~~-~D~ew~~~d~~ 317 (1075)
T KOG2171|consen 257 KNKELENSIRHLALEFLVSLSEY----A------------PAMCKKLAL--LGHTLVPVLLAMMTEEE-DDDEWSNEDDL 317 (1075)
T ss_pred hcccccHHHHHHHHHHHHHHHHh----h------------HHHhhhchh--hhccHHHHHHHhcCCcc-cchhhcccccc
Confidence 35678999999888887765543 1 123355555 66777788887764321 11 000111
Q ss_pred CCCC-CchhHHHHHHHHHHHhhCC--CCCCCchHHHHHHHhcccC-----------------------------------
Q psy2712 79 GLHP-GTAGERGLKLLVMLSYVYP--CHFMQQSSIQALLKMLTIE----------------------------------- 120 (602)
Q Consensus 79 ~~~~-~~~~~~a~eLL~~IS~~~P--~lFk~~e~~~~L~~ll~~~----------------------------------- 120 (602)
+-+. +.-...|.+.|..+|..-| .+|-. .++.+-.++...
T Consensus 318 ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~--~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl 395 (1075)
T KOG2171|consen 318 DEDDEETPYRAAEQALDRLALHLGGKQVLPP--LFEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVL 395 (1075)
T ss_pred ccccccCcHHHHHHHHHHHHhcCChhhehHH--HHHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 1111 2234456666777766555 23333 333333333322
Q ss_pred ------CccchHHHHHHHHhhccCCCCchhhhhHHhHHHH-----HHHHHHhcCCHHHHHHHHHHHHHhcCCCccccccc
Q psy2712 121 ------DEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVP-----ICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMD 189 (602)
Q Consensus 121 ------d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~-----~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~ 189 (602)
.|.|=-.+|.++-.++ - +-.|.+.+..-+ .+..+-..++|+--.||+.++..++-.-
T Consensus 396 ~~l~DphprVr~AA~naigQ~s--t---dl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~------- 463 (1075)
T KOG2171|consen 396 NGLNDPHPRVRYAALNAIGQMS--T---DLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEEC------- 463 (1075)
T ss_pred hhcCCCCHHHHHHHHHHHHhhh--h---hhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhC-------
Confidence 2333333444444333 1 112333332222 2223344566777778888886544332
Q ss_pred ccccCccchhhHHHHHHHHHhhcCCCCC-CC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCC
Q psy2712 190 ENSENGVRTVDLFVDILDKVKMNLTPDS-PN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKK 267 (602)
Q Consensus 190 ~~~~~~~~~~~~~~~Iie~l~~~L~~~s-~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~ 267 (602)
++.....|+..|+++...-|..++ +. .-.++++||.+|.-+-..|....+. ++..+ +.+|.+....+
T Consensus 464 ----~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~F~pY~d~-~Mp~L-~~~L~n~~~~d----- 532 (1075)
T KOG2171|consen 464 ----DKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEKFIPYFDR-LMPLL-KNFLQNADDKD----- 532 (1075)
T ss_pred ----cHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhhhHhHHHH-HHHHH-HHHHhCCCchh-----
Confidence 122346788888886656664433 33 3457899999999999999999966 77776 55666553211
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHhhcCcccCCCC-CCHHHHHHHHHHHH
Q psy2712 268 DWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNAVIVNKGDLLQSDK-MSKQEMAWMRLSAG 339 (602)
Q Consensus 268 ~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~--~~a~~v~kLL~~lL~~~Gel~~~~~-t~~~~ksrLRL~Aa 339 (602)
-.+.+.|. +.++.=.=++...+. +.++.++.++..+= +|+.....+ ++....+|-|++-.
T Consensus 533 --------~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~~--~~~~~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 533 --------LRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLELQ--GSDQDDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred --------hHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc--ccchhhccccHHHHHHHHHHHHHH
Confidence 12445554 333222222222233 57888888877653 344333322 34556667776644
No 8
>PTZ00429 beta-adaptin; Provisional
Probab=95.58 E-value=1.2 Score=52.85 Aligned_cols=127 Identities=9% Similarity=-0.002 Sum_probs=88.4
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
+....+++-+..|...+|.+|.. +++.+.-...+. ..+....|.+|+.++. ++++ ..+...|+.|+.+-
T Consensus 312 eiqyvaLr~I~~i~~~~P~lf~~--~~~~Ff~~~~Dp-~yIK~~KLeIL~~Lan----e~Nv----~~IL~EL~eYa~d~ 380 (746)
T PTZ00429 312 ETQYIVCKNIHALLVIFPNLLRT--NLDSFYVRYSDP-PFVKLEKLRLLLKLVT----PSVA----PEILKELAEYASGV 380 (746)
T ss_pred cHHHHHHHHHHHHHHHCHHHHHH--HHHhhhcccCCc-HHHHHHHHHHHHHHcC----cccH----HHHHHHHHHHhhcC
Confidence 46667888899999999999998 776665433332 3467778999999982 1223 34778888999999
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCC
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNK 237 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~ 237 (602)
++.-++-||++|..+.-.- ......+++.++.-++.+.+.....+.++-.|.+..|..
T Consensus 381 D~ef~r~aIrAIg~lA~k~----------------~~~a~~cV~~Ll~ll~~~~~~v~e~i~vik~IlrkyP~~ 438 (746)
T PTZ00429 381 DMVFVVEVVRAIASLAIKV----------------DSVAPDCANLLLQIVDRRPELLPQVVTAAKDIVRKYPEL 438 (746)
T ss_pred CHHHHHHHHHHHHHHHHhC----------------hHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHCccH
Confidence 9999999999985443221 123355555554444444444456788888898888874
No 9
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.82 E-value=4.7 Score=46.35 Aligned_cols=212 Identities=19% Similarity=0.214 Sum_probs=116.2
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHH---h
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMI---E 161 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~a---l 161 (602)
..=+|+++|..+|-.+|+.-.. +=.++.+++.+.+-.++-.++-+|-+.|.- +.+. +++...-.|. .
T Consensus 319 ~rFsA~Riln~lam~~P~kv~v--cN~evEsLIsd~Nr~IstyAITtLLKTGt~----e~id----rLv~~I~sfvhD~S 388 (898)
T COG5240 319 LRFSAMRILNQLAMKYPQKVSV--CNKEVESLISDENRTISTYAITTLLKTGTE----ETID----RLVNLIPSFVHDMS 388 (898)
T ss_pred HHHHHHHHHHHHHhhCCceeee--cChhHHHHhhcccccchHHHHHHHHHcCch----hhHH----HHHHHHHHHHHhhc
Confidence 3447999999999999999988 777888888888888888888888888821 2222 2332222222 1
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhh
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAV 241 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~ 241 (602)
.|--.-|=-|+|-|.-+++.+. ..++.-+...++. +-+-+--...+-+++-+-.+.|+.
T Consensus 389 D~FKiI~ida~rsLsl~Fp~k~---------------~s~l~FL~~~L~~--eGg~eFK~~~Vdaisd~~~~~p~s---- 447 (898)
T COG5240 389 DGFKIIAIDALRSLSLLFPSKK---------------LSYLDFLGSSLLQ--EGGLEFKKYMVDAISDAMENDPDS---- 447 (898)
T ss_pred cCceEEeHHHHHHHHhhCcHHH---------------HHHHHHHHHHHHh--cccchHHHHHHHHHHHHHhhCchH----
Confidence 2222334445555533444332 2333333333221 111111112233333333333332
Q ss_pred HHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCccc
Q psy2712 242 IKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLL 321 (602)
Q Consensus 242 ~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~ 321 (602)
|..||..++-...-+ +.-+-++|+|. ||...|-
T Consensus 448 ----------------------------------------kEraLe~LC~fIEDc----ey~~I~vrIL~-iLG~EgP-- 480 (898)
T COG5240 448 ----------------------------------------KERALEVLCTFIEDC----EYHQITVRILG-ILGREGP-- 480 (898)
T ss_pred ----------------------------------------HHHHHHHHHHHHhhc----chhHHHHHHHH-HhcccCC--
Confidence 444444444433222 23333444443 4444442
Q ss_pred CCCCCCH-----------HHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHH-HHHHHHhcCchHHHHH
Q psy2712 322 QSDKMSK-----------QEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFY-NLSRLLIDEVPEVREI 377 (602)
Q Consensus 322 ~~~~t~~-----------~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~-~La~lvqD~~~~VR~~ 377 (602)
..++|. -+-++.|-+|-.|+=|.|=+. .+.+.|+... .|-...+|...+||.+
T Consensus 481 -~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~--~d~~~~~sv~~~lkRclnD~DdeVRdr 545 (898)
T COG5240 481 -RAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNI--SDVVSPQSVENALKRCLNDQDDEVRDR 545 (898)
T ss_pred -CCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCc--cccccHHHHHHHHHHHhhcccHHHHHH
Confidence 112232 245788999999999988754 6677776554 4567889999999987
No 10
>KOG0414|consensus
Probab=94.78 E-value=4.4 Score=49.77 Aligned_cols=375 Identities=17% Similarity=0.165 Sum_probs=207.4
Q ss_pred HHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHH
Q psy2712 18 IVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLS 97 (602)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS 97 (602)
.+++-..|...+ |+++.-+-.| --++..-|..|+.+----+.|.. .+...-++.+|-|+|
T Consensus 629 ~~~~s~~d~~sl---E~vl~~lv~~--------~~Id~~Vi~~Lw~~ftlq~~~~~---------~~q~~~sl~iL~M~s 688 (1251)
T KOG0414|consen 629 LIDASIGDLTSL---EEVLCELVAR--------GYIDAAVINKLWEIFTLQKKGTT---------NEQSRGSLIILGMAS 688 (1251)
T ss_pred HhcccccchhhH---HHHHHHHHhC--------CCccHHHHHHHHHHHHHHhccCc---------hhhhccceeehhhhh
Confidence 344445666666 5555443222 24567778888888722123332 223345789999999
Q ss_pred hhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCC-------chhhhhHHhHHHHHHHHHHhcCCH-----
Q psy2712 98 YVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPL-------GEVFKEEMKQLVPICQDMIEKGTP----- 165 (602)
Q Consensus 98 ~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~-------~~~~p~~~~~l~~~Lk~~al~GtP----- 165 (602)
...|.+-.. ..+.|++. .-.+|.++..+|+.++.++--... .=..| ....+.++|..+-..|=+
T Consensus 689 ~s~~~Iv~~--~~~~lv~i-glg~p~l~~~~L~~~s~i~~~r~~~~~~~r~~f~~~-~~~~L~k~L~~l~~~~~~~~d~~ 764 (1251)
T KOG0414|consen 689 RSKPSIVLA--NLDLLVQI-GLGEPRLAVDVLARYSNIVDPRKLEDAYSRPKFNLE-QEEVLFKILEKLLFFEFMKADDD 764 (1251)
T ss_pred ccChhhhhh--hhHHHHHh-ccCcHHHHHHHHHHHHHhhcccccchhhccccccCc-hHHHHHHHHHHHHhhccCCcchH
Confidence 999999988 88887764 444577888899999988621111 00134 345789999999888633
Q ss_pred --HHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcC----C------CCCC---Ccch--------
Q psy2712 166 --KQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNL----T------PDSP---NYRT-------- 222 (602)
Q Consensus 166 --~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L----~------~~s~---~l~t-------- 222 (602)
.-|..|+.+|+.++... +.++..|+.++++.. + .+++ ...|
T Consensus 765 ~~~~~e~ais~Iy~is~~P----------------e~la~~li~~~~~~~f~~~~~E~~~~~~d~~k~~~ltp~~~l~~~ 828 (1251)
T KOG0414|consen 765 WFGVAEVAISAIYSISMLP----------------EVLATQLIRKLLKQDFESLECEADTITDDPRKSDALTPERVLKDS 828 (1251)
T ss_pred HHHHHHHHHHHHHHHhcCh----------------HHHHHHHHHHHHHHHhhhhhhhhccccCCcccccccCHHHHHHHh
Confidence 36788899998877654 467778887776653 1 0111 1222
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCcccccc-------CCCCccCCCC-----CHHHHHHHHHHHHHH
Q psy2712 223 AIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQY-------KKDWVFEEDL-----PNEVRCKMEGMKMMA 290 (602)
Q Consensus 223 ~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~-------~~~W~~d~~l-----~~e~~aKi~aLK~lv 290 (602)
-|...|++|-.-+-..+..+-..+.+.-++..+.......... +.....+.++ +++..-=+.+++ =
T Consensus 829 lif~vg~vAikqlvyiE~~i~~~~kRr~~~~~~~e~k~~N~~e~~s~t~~~~~~~~e~dlig~tseDd~~d~i~~ic--E 906 (1251)
T KOG0414|consen 829 LIFIVGDVAIKQLVYIEVCISKEFKRRKIKTELEEKKDKNQRENLSNTQRETQFTVELDLIGGTSEDDLADLISGIC--E 906 (1251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCchhhhccccccccCCccccccCCCcchhHHHHHHHHH--H
Confidence 4556677777766666666652355555555553322221111 0001111000 011111111211 1
Q ss_pred HHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhccc---------------------
Q psy2712 291 RWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQK--------------------- 349 (602)
Q Consensus 291 n~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~--------------------- 349 (602)
+.|+.- +. ..-.+..-++..+-.+.|.+.. .-|+.+|..|+=|++...
T Consensus 907 ~eLl~g-ek-~lLg~f~piv~e~c~n~~~~sd---------p~Lq~AAtLaL~klM~iSa~fces~l~llftimeksp~p 975 (1251)
T KOG0414|consen 907 KELLYG-EK-SLLGRFAPIVVEGCRNPGLFSD---------PELQAAATLALGKLMCISAEFCESHLPLLFTIMEKSPSP 975 (1251)
T ss_pred HHHhcC-hH-HHHHHHHHHHHHHhcCCCcCCC---------HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCCc
Confidence 111110 00 0111111122333334444332 124444444444444321
Q ss_pred ---------------CcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChh-hHHHHhhccccchHH
Q psy2712 350 ---------------GVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLD-FMGFYALGGLEEEKK 413 (602)
Q Consensus 350 ---------------~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~r-f~~l~fL~A~EPd~e 413 (602)
+|...|.| .=..|=.-.+|+++.||+.=+--|...+.++. +-.| |.+-.+++-.||+++
T Consensus 976 ~IRsN~VvalgDlav~fpnlie~-~T~~Ly~rL~D~~~~vRkta~lvlshLILndm----iKVKGql~eMA~cl~D~~~~ 1050 (1251)
T KOG0414|consen 976 RIRSNLVVALGDLAVRFPNLIEP-WTEHLYRRLRDESPSVRKTALLVLSHLILNDM----IKVKGQLSEMALCLEDPNAE 1050 (1251)
T ss_pred eeeecchheccchhhhcccccch-hhHHHHHHhcCccHHHHHHHHHHHHHHHHhhh----hHhcccHHHHHHHhcCCcHH
Confidence 12222222 11122234679999999998888888887665 5433 688888999999999
Q ss_pred hHHHHHHHHH---c----CCCCCc----------------hhHHHHHhhhccCCCCCCCc
Q psy2712 414 LKMSTEKALA---Q----LPNFLP----------------DFMLVFAIPVLTHTPAYTSN 450 (602)
Q Consensus 414 lk~~v~~~~~---~----~~~~~p----------------Ey~L~rLIhLLAHHPDF~~~ 450 (602)
++...+.+.. . ..+.+| -.++-|||-+|..+|.|+..
T Consensus 1051 IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~~l~~~~~~~vm~~li~~ikkderf~~~ 1110 (1251)
T KOG0414|consen 1051 ISDLAKSFFKELSSKGNTIYNLLPDILSRLSNGNLEEESYKTVMEFLIGLIKKDERFSAD 1110 (1251)
T ss_pred HHHHHHHHHHHhhhcccchhhhchHHHHhhccCcccchhhHHHHHHHHHHhccccccccc
Confidence 9998664430 0 011122 46789999999999999865
No 11
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=93.63 E-value=4.3 Score=53.06 Aligned_cols=191 Identities=17% Similarity=0.147 Sum_probs=117.0
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC---CCCCchHHHHHHHhcccCCccchHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC---HFMQQSSIQALLKMLTIEDEIVAPLV 128 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~---lFk~~e~~~~L~~ll~~~d~~v~e~~ 128 (602)
+.+...||.|++++..+ ..+..+.|...|..|+...+. ..-....+..|++++...++.+.+.+
T Consensus 442 Ii~~ggIp~LV~LL~s~-------------s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeA 508 (2102)
T PLN03200 442 LGGREGVQLLISLLGLS-------------SEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDS 508 (2102)
T ss_pred HHHcCcHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHH
Confidence 34557899999999743 234667788889888876654 12223489999999987777888889
Q ss_pred HHHHHhhccCCCCchhhhhH--HhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHH
Q psy2712 129 FSVLSFLGKYRPLGEVFKEE--MKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDIL 206 (602)
Q Consensus 129 Lk~La~~~k~k~~~~~~p~~--~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 206 (602)
.-+|.+++.+ .++.... ....++.|-++=..|+++.=+.|+.+|..++...+ .+.+
T Consensus 509 awAL~NLa~~---~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d-------------------~~~I 566 (2102)
T PLN03200 509 ATVLWNLCCH---SEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTAD-------------------AATI 566 (2102)
T ss_pred HHHHHHHhCC---cHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccc-------------------hhHH
Confidence 9999999853 2222211 12345566677678899877899999976655443 1233
Q ss_pred HHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhH----HHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHH
Q psy2712 207 DKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVI----KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRC 281 (602)
Q Consensus 207 e~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~----~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~a 281 (602)
..++.-|..+++. ....|.+||.|............ .. ....|+ ++|..+. ...
T Consensus 567 ~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~g-gL~~Lv-~LL~sgs-------------------~~i 625 (2102)
T PLN03200 567 SQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAAND-ALRTLI-QLLSSSK-------------------EET 625 (2102)
T ss_pred HHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccc-cHHHHH-HHHcCCC-------------------HHH
Confidence 3444345444433 33357788888765544321111 01 223333 2443221 244
Q ss_pred HHHHHHHHHHHhhcccc
Q psy2712 282 KMEGMKMMARWLLGLKA 298 (602)
Q Consensus 282 Ki~aLK~lvn~Ll~~~~ 298 (602)
|..|.-++.|.+-+..+
T Consensus 626 kk~Aa~iLsnL~a~~~d 642 (2102)
T PLN03200 626 QEKAASVLADIFSSRQD 642 (2102)
T ss_pred HHHHHHHHHHHhcCChH
Confidence 67778888888876654
No 12
>KOG1242|consensus
Probab=92.33 E-value=2.1 Score=49.03 Aligned_cols=250 Identities=14% Similarity=0.156 Sum_probs=130.7
Q ss_pred CCCchHHHHHHHhcccCCccchH-HHHHHHH----hhccCCCCchhhhhHHhHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q psy2712 104 FMQQSSIQALLKMLTIEDEIVAP-LVFSVLS----FLGKYRPLGEVFKEEMKQLVPICQDMIEKGT--PKQAKQAIRCLY 176 (602)
Q Consensus 104 Fk~~e~~~~L~~ll~~~d~~v~e-~~Lk~La----~~~k~k~~~~~~p~~~~~l~~~Lk~~al~Gt--P~qAK~Avr~L~ 176 (602)
|+....+..|.+.+.+.++.... .++.+.- +.|+. .-|-+...+-..|.++.-.+. ..+|..|+++++
T Consensus 170 ~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~-----~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~ 244 (569)
T KOG1242|consen 170 LKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP-----FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIM 244 (569)
T ss_pred hhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC-----CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHH
Confidence 33345666777777655444433 2333322 23321 134445557777888866554 478999999997
Q ss_pred HhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhc
Q psy2712 177 KNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLI 256 (602)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl 256 (602)
..++.-. . +..+..++..+... ...--..+++.||.++..+|.+.+.-..+ |...+ .++|
T Consensus 245 ~~~~~~a-V-------------K~llpsll~~l~~~---kWrtK~aslellg~m~~~ap~qLs~~lp~-iiP~l-sevl- 304 (569)
T KOG1242|consen 245 RCLSAYA-V-------------KLLLPSLLGSLLEA---KWRTKMASLELLGAMADCAPKQLSLCLPD-LIPVL-SEVL- 304 (569)
T ss_pred HhcCcch-h-------------hHhhhhhHHHHHHH---hhhhHHHHHHHHHHHHHhchHHHHHHHhH-hhHHH-HHHH-
Confidence 6554422 1 33334444443222 22333457889999999999998888877 44444 2333
Q ss_pred cCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHH
Q psy2712 257 KETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRL 336 (602)
Q Consensus 257 ~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL 336 (602)
|.... .-|-.|+++|.+.+.-..+.+ +++ +...++..-|+.... ++..-.+-.+=
T Consensus 305 ------------~DT~~------evr~a~~~~l~~~~svidN~d--I~~---~ip~Lld~l~dp~~~--~~e~~~~L~~t 359 (569)
T KOG1242|consen 305 ------------WDTKP------EVRKAGIETLLKFGSVIDNPD--IQK---IIPTLLDALADPSCY--TPECLDSLGAT 359 (569)
T ss_pred ------------ccCCH------HHHHHHHHHHHHHHHhhccHH--HHH---HHHHHHHHhcCcccc--hHHHHHhhcce
Confidence 44332 225677888877765554433 333 334444444543311 11111111110
Q ss_pred H-------HHHHHh------hhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHH
Q psy2712 337 S-------AGCAML------KICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFY 403 (602)
Q Consensus 337 ~-------Aa~~lL------KLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~ 403 (602)
+ .+.+++ .++....--+.-+...|..++.++.|+ ++=.-|+.+|-.+|....
T Consensus 360 tFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp--~~lapfl~~Llp~lk~~~------------- 424 (569)
T KOG1242|consen 360 TFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDP--KDLAPFLPSLLPGLKENL------------- 424 (569)
T ss_pred eeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCH--HHHhhhHHHHhhHHHHHh-------------
Confidence 0 011111 111111111233445666777777665 455667788877777654
Q ss_pred hhccccchHHhHHHHHHHH
Q psy2712 404 ALGGLEEEKKLKMSTEKAL 422 (602)
Q Consensus 404 fL~A~EPd~elk~~v~~~~ 422 (602)
.+|.+|.|....++.
T Consensus 425 ----~d~~PEvR~vaarAL 439 (569)
T KOG1242|consen 425 ----DDAVPEVRAVAARAL 439 (569)
T ss_pred ----cCCChhHHHHHHHHH
Confidence 455666666655554
No 13
>KOG1824|consensus
Probab=92.22 E-value=16 Score=44.33 Aligned_cols=117 Identities=18% Similarity=0.201 Sum_probs=64.5
Q ss_pred CCCCcchhhHHHHHHHH---HhhhhccccccccchhHHHHHHHhhh-------------cccccccccccCc-----HHH
Q psy2712 2 RQHDTDENVRYEVVTAI---VTTARRDFDIVSSSEDLLTFVKERTL-------------DKKVMPHRLTGNA-----IPI 60 (602)
Q Consensus 2 r~~d~~~~~r~~v~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~-------------~kk~spl~~N~ss-----I~~ 60 (602)
+..|.|..||...|.|+ +.+- .|+.=.- =+.-|..+-||+- .--.||+.+|.+. +++
T Consensus 578 ~a~d~DqeVkeraIscmgq~i~~f-gD~l~~e-L~~~L~il~eRl~nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~ 655 (1233)
T KOG1824|consen 578 KATDSDQEVKERAISCMGQIIANF-GDFLGNE-LPRTLPILLERLGNEITRLTAVKALTLIAMSPLDIDLSPVLTEILPE 655 (1233)
T ss_pred hcccccHHHHHHHHHHHHHHHHHH-hhhhhhh-hHHHHHHHHHHHhchhHHHHHHHHHHHHHhccceeehhhhHHHHHHH
Confidence 46799999999988775 2222 2543221 2344555556621 2235899999543 466
Q ss_pred HHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHHHHHHH
Q psy2712 61 LISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLVFSVLS 133 (602)
Q Consensus 61 Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~Lk~La 133 (602)
|..++++. .+..+-..+..+..+-+++...+.. +..+.+|-.+|.+.|-.+.+.++..|+
T Consensus 656 l~~flrK~-------------~r~lr~~~l~a~~~L~~~~~~~~~~~~~e~vL~el~~Lisesdlhvt~~a~~~L~ 718 (1233)
T KOG1824|consen 656 LASFLRKN-------------QRALRLATLTALDKLVKNYSDSIPAELLEAVLVELPPLISESDLHVTQLAVAFLT 718 (1233)
T ss_pred HHHHHHHH-------------HHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 77777654 2233344445555555555554444 445666666666655444444433333
No 14
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=91.79 E-value=16 Score=40.61 Aligned_cols=237 Identities=15% Similarity=0.154 Sum_probs=131.1
Q ss_pred hhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
....|..+|..+ +..|..+.. ...++.|..++...+|-+.-.++++|..+++. ....+. ...+.+.+..+-..
T Consensus 168 V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~---~~~~~~-~~~~i~~l~~~l~s 242 (526)
T PF01602_consen 168 VVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPM---EPEDAD-KNRIIEPLLNLLQS 242 (526)
T ss_dssp HHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSS---SHHHHH-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccC---Chhhhh-HHHHHHHHHHHhhc
Confidence 455677888878 555655444 22555555555556676666678888877732 111210 03567777777667
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhh
Q psy2712 163 GTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAV 241 (602)
Q Consensus 163 GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~ 241 (602)
.+|.-.-.|++++..+.+.. .....++..+..-|...+++ -...|.+|.+|+...|..+. +
T Consensus 243 ~~~~V~~e~~~~i~~l~~~~-----------------~~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~ 304 (526)
T PF01602_consen 243 SSPSVVYEAIRLIIKLSPSP-----------------ELLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-N 304 (526)
T ss_dssp HHHHHHHHHHHHHHHHSSSH-----------------HHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-T
T ss_pred cccHHHHHHHHHHHHhhcch-----------------HHHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-h
Confidence 77777778889886654432 24456666665556533322 22345666666665522222 1
Q ss_pred HHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCccc
Q psy2712 242 IKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLL 321 (602)
Q Consensus 242 ~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~ 321 (602)
. .++. |. +..+. ....|..+|.++.+-+ ++.-++.+++=|...+...++
T Consensus 305 ~-~~~~-~~----l~~~~------------------d~~Ir~~~l~lL~~l~-----~~~n~~~Il~eL~~~l~~~~d-- 353 (526)
T PF01602_consen 305 Q-SLIL-FF----LLYDD------------------DPSIRKKALDLLYKLA-----NESNVKEILDELLKYLSELSD-- 353 (526)
T ss_dssp H-HHHH-HH----HHCSS------------------SHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHC----
T ss_pred h-hhhh-he----ecCCC------------------ChhHHHHHHHHHhhcc-----cccchhhHHHHHHHHHHhccc--
Confidence 1 2121 21 21111 1234667777766654 123355566555555522111
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHH-HHHHHHHHhcCchHHHHHHHHHHHHhhccC
Q psy2712 322 QSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQ-FYNLSRLLIDEVPEVREIFANKLHKGLGRN 389 (602)
Q Consensus 322 ~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~-f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~ 389 (602)
. .+|-.+..++-++|.. |.. .++. +..+..+++.....|+...+.-+...+.+.
T Consensus 354 -------~---~~~~~~i~~I~~la~~--~~~--~~~~~v~~l~~ll~~~~~~~~~~~~~~i~~ll~~~ 408 (526)
T PF01602_consen 354 -------P---DFRRELIKAIGDLAEK--FPP--DAEWYVDTLLKLLEISGDYVSNEIINVIRDLLSNN 408 (526)
T ss_dssp -------H---HHHHHHHHHHHHHHHH--HGS--SHHHHHHHHHHHHHCTGGGCHCHHHHHHHHHHHHS
T ss_pred -------h---hhhhhHHHHHHHHHhc--cCc--hHHHHHHHHHHhhhhccccccchHHHHHHHHhhcC
Confidence 1 1777888888888873 422 2223 334556777777777888888888877653
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=90.48 E-value=3.5 Score=40.04 Aligned_cols=148 Identities=15% Similarity=0.105 Sum_probs=97.9
Q ss_pred HHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCC--hhhHHHHhhccccc
Q psy2712 333 WMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLP--LDFMGFYALGGLEE 410 (602)
Q Consensus 333 rLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp--~rf~~l~fL~A~EP 410 (602)
-+|..|-.+|=-||. +|...+.| ....+...++|+++.||+.=+.-|.+.+..+- +. ..++.-+..+..||
T Consensus 3 ~vR~n~i~~l~DL~~--r~~~~ve~-~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik~k~~l~~~~l~~l~D~ 75 (178)
T PF12717_consen 3 SVRNNAIIALGDLCI--RYPNLVEP-YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IKVKGQLFSRILKLLVDE 75 (178)
T ss_pred HHHHHHHHHHHHHHH--hCcHHHHh-HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----eeehhhhhHHHHHHHcCC
Confidence 467888888888887 57777765 66778889999999999999999999887754 43 23334444456999
Q ss_pred hHHhHHHHHHHHH----cCCCCCchhHHHHHhhhccC---CCCCCCcccHHHHHHHHHHHHHHHHHhhCCCCCcchHHHH
Q psy2712 411 EKKLKMSTEKALA----QLPNFLPDFMLVFAIPVLTH---TPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFF 483 (602)
Q Consensus 411 d~elk~~v~~~~~----~~~~~~pEy~L~rLIhLLAH---HPDF~~~~d~~~L~~~~~yL~FyLe~lat~~~eN~sl~f~ 483 (602)
++++|........ .......-..||=+|..|+. ||.|. ...-..+...+.|.++-+... ... ....
T Consensus 76 ~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~----~~~~~~~~~I~~fll~~i~~d-~~~--~~l~ 148 (178)
T PF12717_consen 76 NPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYG----PLSREKRKKIYKFLLDFIDKD-KQK--ESLV 148 (178)
T ss_pred CHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCcccccccc----ccCHHHHHHHHHHHHHHcCcH-HHH--HHHH
Confidence 9999998655542 21122224455555666665 45551 123345666777878876632 123 4457
Q ss_pred HHHHHHhhhcc
Q psy2712 484 KEMIDQMKNCK 494 (602)
Q Consensus 484 ~~i~erIKq~r 494 (602)
.++.+|+..+.
T Consensus 149 ~kl~~~~~~~~ 159 (178)
T PF12717_consen 149 EKLCQRFLNAV 159 (178)
T ss_pred HHHHHHHHHHc
Confidence 77888877654
No 16
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=90.25 E-value=0.64 Score=40.26 Aligned_cols=106 Identities=19% Similarity=0.161 Sum_probs=71.7
Q ss_pred cHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHHHHHHH
Q psy2712 57 AIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLVFSVLS 133 (602)
Q Consensus 57 sI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~Lk~La 133 (602)
.|+.|++.+++. .......+...|..++...|..... .+.++.|++++.++++.+...++.+|+
T Consensus 8 ~i~~l~~~l~~~-------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~ 74 (120)
T cd00020 8 GLPALVSLLSSS-------------DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALR 74 (120)
T ss_pred ChHHHHHHHHcC-------------CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHH
Confidence 567777777532 1245666777788887765444333 458888999888888899999999999
Q ss_pred hhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy2712 134 FLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLY 176 (602)
Q Consensus 134 ~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~ 176 (602)
+++...+-..... ....+.+.|.++...++..-.++|..+|.
T Consensus 75 ~l~~~~~~~~~~~-~~~g~l~~l~~~l~~~~~~~~~~a~~~l~ 116 (120)
T cd00020 75 NLAAGPEDNKLIV-LEAGGVPKLVNLLDSSNEDIQKNATGALS 116 (120)
T ss_pred HHccCcHHHHHHH-HHCCChHHHHHHHhcCCHHHHHHHHHHHH
Confidence 9985421111111 22346788888888888877778877773
No 17
>KOG2259|consensus
Probab=87.15 E-value=39 Score=39.74 Aligned_cols=236 Identities=10% Similarity=0.046 Sum_probs=138.9
Q ss_pred hhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcc-h
Q psy2712 144 VFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYR-T 222 (602)
Q Consensus 144 ~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~-t 222 (602)
..+...+.++..|.+++-.+.++-=++|++.|.++...- ..-+.++...++.+..+.+... +
T Consensus 191 s~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~eg~-----------------kL~~~~Y~~A~~~lsD~~e~VR~a 253 (823)
T KOG2259|consen 191 SLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSEGF-----------------KLSKACYSRAVKHLSDDYEDVRKA 253 (823)
T ss_pred cccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcccc-----------------cccHHHHHHHHHHhcchHHHHHHH
Confidence 344444556666778887777776667777776654421 2234566666667754444443 4
Q ss_pred HHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCc----------cCCCCCHHHHHHHHHHHHHHHH
Q psy2712 223 AIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWV----------FEEDLPNEVRCKMEGMKMMARW 292 (602)
Q Consensus 223 ~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~----------~d~~l~~e~~aKi~aLK~lvn~ 292 (602)
+++.+.-.+..+|.-.+...++ ...+.+.+.+-...- .+-+|. +-.+++++..-+.+.=|+|. +
T Consensus 254 Avqlv~v~gn~~p~~~e~e~~e---~kl~D~aF~~vC~~v--~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms-~ 327 (823)
T KOG2259|consen 254 AVQLVSVWGNRCPAPLERESEE---EKLKDAAFSSVCRAV--RDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMS-R 327 (823)
T ss_pred HHHHHHHHHhcCCCcccchhhh---hhhHHHHHHHHHHHH--hcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhh-h
Confidence 6888888888887544444332 222233332211110 012232 12334445444444444444 1
Q ss_pred hhcccchhhhHHHHHHHHHHHHhhcCcccCCCC----------------------------CCHHHHHHHHHHHHHHHhh
Q psy2712 293 LLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDK----------------------------MSKQEMAWMRLSAGCAMLK 344 (602)
Q Consensus 293 Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~----------------------------t~~~~ksrLRL~Aa~~lLK 344 (602)
++..+...+..+ -+.+.|+.+..+. -=+.+....|-+|--++=+
T Consensus 328 lRRkr~ahkrpk--------~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~ 399 (823)
T KOG2259|consen 328 LRRKRTAHKRPK--------ALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCS 399 (823)
T ss_pred hhhhhhcccchH--------HHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHH
Confidence 221111111111 2225555443321 1145688999999999999
Q ss_pred hhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHH
Q psy2712 345 ICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMS 417 (602)
Q Consensus 345 LA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~ 417 (602)
||... .-+...-+.-|.-+.+|+-..||-.=+.-|++...... |...++-.+.=+-.|-..+.|..
T Consensus 400 La~ss---P~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~----i~eeql~~il~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 400 LATSS---PGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA----IREEQLRQILESLEDRSVDVREA 465 (823)
T ss_pred HHcCC---CCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe----ecHHHHHHHHHHHHhcCHHHHHH
Confidence 99853 45556678888999999999999998888888776666 88889888776666766666665
No 18
>PRK09687 putative lyase; Provisional
Probab=82.52 E-value=68 Score=33.68 Aligned_cols=192 Identities=16% Similarity=0.152 Sum_probs=106.5
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM 188 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~ 188 (602)
..+.|...+.+++..+-..+..+|...+ . ....+.+..++...+|..=++|+.+| +-.+....
T Consensus 24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~--~----------~~~~~~l~~ll~~~d~~vR~~A~~aL-g~lg~~~~---- 86 (280)
T PRK09687 24 NDDELFRLLDDHNSLKRISSIRVLQLRG--G----------QDVFRLAIELCSSKNPIERDIGADIL-SQLGMAKR---- 86 (280)
T ss_pred cHHHHHHHHhCCCHHHHHHHHHHHHhcC--c----------chHHHHHHHHHhCCCHHHHHHHHHHH-HhcCCCcc----
Confidence 6778888888888777776777777666 1 12455667788889999989999999 44554320
Q ss_pred cccccCccchhhHHHHHHHHHhhc-CCCCCCCcc-hHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccC
Q psy2712 189 DENSENGVRTVDLFVDILDKVKMN-LTPDSPNYR-TAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK 266 (602)
Q Consensus 189 ~~~~~~~~~~~~~~~~Iie~l~~~-L~~~s~~l~-t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~ 266 (602)
...+.+..+..- ++..++... .+..+||++....+.-.. ..+...+ ..+ .+
T Consensus 87 ------------~~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~~~----~a~~~l~--~~~-~D-------- 139 (280)
T PRK09687 87 ------------CQDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLYSP----KIVEQSQ--ITA-FD-------- 139 (280)
T ss_pred ------------chHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccccccch----HHHHHHH--HHh-hC--------
Confidence 011222333222 232333333 677788877433321111 1111110 011 10
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2712 267 KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKIC 346 (602)
Q Consensus 267 ~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA 346 (602)
.+| ..+..++..|. .-.+ +..+..|..++.. . . ..+|..|+.+|=++.
T Consensus 140 ~~~----------~VR~~a~~aLg-----~~~~----~~ai~~L~~~L~d-~--------~----~~VR~~A~~aLg~~~ 187 (280)
T PRK09687 140 KST----------NVRFAVAFALS-----VIND----EAAIPLLINLLKD-P--------N----GDVRNWAAFALNSNK 187 (280)
T ss_pred CCH----------HHHHHHHHHHh-----ccCC----HHHHHHHHHHhcC-C--------C----HHHHHHHHHHHhcCC
Confidence 111 22344555443 2222 2334445555521 1 1 149999999988872
Q ss_pred cccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHH
Q psy2712 347 EQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLH 383 (602)
Q Consensus 347 ~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~ 383 (602)
++ +|+....|...++|+..+||..=+.-|-
T Consensus 188 ----~~---~~~~~~~L~~~L~D~~~~VR~~A~~aLg 217 (280)
T PRK09687 188 ----YD---NPDIREAFVAMLQDKNEEIRIEAIIGLA 217 (280)
T ss_pred ----CC---CHHHHHHHHHHhcCCChHHHHHHHHHHH
Confidence 22 3556667888889999999998765553
No 19
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=81.11 E-value=1.2e+02 Score=35.39 Aligned_cols=297 Identities=15% Similarity=0.156 Sum_probs=139.6
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM 188 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~ 188 (602)
..+.+++..+ .++.+-..+-+.++++.| .||.....-+..+.++|......-=+.|+|-|-.++.+.
T Consensus 24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk------~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~------ 90 (556)
T PF05918_consen 24 DYKEILDGVK-GSPKEKRLAAQFIPKFFK------HFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN------ 90 (556)
T ss_dssp HHHHHHHGGG-S-HHHHHHHHHHHHHHHC------C-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T-------
T ss_pred HHHHHHHHcc-CCHHHHHHHHHHHHHHHh------hChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH------
Confidence 3344444433 234344445555565553 388777888999999999999988889999997666654
Q ss_pred cccccCccchhhHHHHHHHHHhhcCCCCC-CCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCC
Q psy2712 189 DENSENGVRTVDLFVDILDKVKMNLTPDS-PNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKK 267 (602)
Q Consensus 189 ~~~~~~~~~~~~~~~~Iie~l~~~L~~~s-~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~ 267 (602)
.++.+.|.+-|+.-|..++ ..+..+=.+|.++.+.+|...-. -+.+.|+-.. .+
T Consensus 91 ----------~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~--------~lf~~i~~~~--~~----- 145 (556)
T PF05918_consen 91 ----------PEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLT--------GLFSQIESSK--SG----- 145 (556)
T ss_dssp -----------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHH--------HHHHHHH-----HS-----
T ss_pred ----------HHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHH--------HHHHHHHhcc--cC-----
Confidence 3567788888777775544 34555567888888877753221 1223333211 00
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhh-cCcccCCCCCCHHHHHHHHHHHHHHHhhh
Q psy2712 268 DWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVIVN-KGDLLQSDKMSKQEMAWMRLSAGCAMLKI 345 (602)
Q Consensus 268 ~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~lL~~-~Gel~~~~~t~~~~ksrLRL~Aa~~lLKL 345 (602)
++ ..+.-+||++..++..+..+. ...+.+-+++...|.. =++++ . ....+. -.+|+-
T Consensus 146 --------de--~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVT------a---eEF~l~--m~lL~~ 204 (556)
T PF05918_consen 146 --------DE--QVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVT------A---EEFELF--MSLLKS 204 (556)
T ss_dssp ---------H--HHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--------H---HHHHHH--HHHHHT
T ss_pred --------ch--HHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhcc------H---HHHHHH--HHHHHh
Confidence 01 235557888888888876432 1112222222222221 01111 1 111111 123333
Q ss_pred hcccCcCCcCCHHHHHHHHHHHhc----------CchHHHHHHHHHHHHhh---ccCCCCCCCChhhHHHHhhc---ccc
Q psy2712 346 CEQKGVGDQYSPEQFYNLSRLLID----------EVPEVREIFANKLHKGL---GRNLPNKCLPLDFMGFYALG---GLE 409 (602)
Q Consensus 346 A~~~~~~~~I~~~~f~~La~lvqD----------~~~~VR~~Fl~KL~k~L---~~~~~~~~Lp~rf~~l~fL~---A~E 409 (602)
.+ .|...-+++-...|.-++.+ ...+.=.+|+..+..-| +++. -+.+|+.++.=- .++
T Consensus 205 lk--~~~~~~t~~g~qeLv~ii~eQa~Ld~~f~~sD~e~Idrli~C~~~Alp~fs~~v----~Sskfv~y~~~kvlP~l~ 278 (556)
T PF05918_consen 205 LK--IYGGKQTIEGRQELVDIIEEQADLDQPFDPSDPESIDRLISCLRQALPFFSRGV----SSSKFVNYMCEKVLPKLS 278 (556)
T ss_dssp SG--G---GSSHHHHHHHHHHHHHHHTTTS---SSSHHHHHHHHHHHHHHGGG-BTTB------HHHHHHHHHHTCCCTT
T ss_pred Cc--cccccCChHHHHHHHHHHHHHhccCCCCCCcCHHHHHHHHHHHHHhhHHhcCCC----ChHHHHHHHHHHhcCChh
Confidence 22 24434455444445444431 11344456666666644 3333 567776655421 111
Q ss_pred c-hHHhHHHHHHHH----HcCCCCCchhHHHHHhhhc-cCCCCCCCcccHHHH-HHHHHHHHHHHHHhhCC
Q psy2712 410 E-EKKLKMSTEKAL----AQLPNFLPDFMLVFAIPVL-THTPAYTSNEAVDEL-LVMRACLWFILEPLLTQ 473 (602)
Q Consensus 410 P-d~elk~~v~~~~----~~~~~~~pEy~L~rLIhLL-AHHPDF~~~~d~~~L-~~~~~yL~FyLe~lat~ 473 (602)
- ..+.|-.+-+.. ......-++-.||.+..+| ..=|.= .+ .+.+ -...+||.|-+..|+.+
T Consensus 279 ~l~e~~kl~lLk~lAE~s~~~~~~d~~~~L~~i~~~L~~ymP~~--~~-~~~l~fs~vEcLL~afh~La~k 346 (556)
T PF05918_consen 279 DLPEDRKLDLLKLLAELSPFCGAQDARQLLPSIFQLLKKYMPSK--KT-EPKLQFSYVECLLYAFHQLARK 346 (556)
T ss_dssp -----HHHHHHHHHHHHHTT----THHHHHHHHHHHHHTTS-------------HHHHHHHHHHHHHHHTT
T ss_pred hCChHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHHHhCCCC--CC-CCcccchHhhHHHHHHHHHhhh
Confidence 1 113333332222 1222222567777776665 455622 11 2333 34688999999999986
No 20
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=80.29 E-value=24 Score=40.08 Aligned_cols=193 Identities=17% Similarity=0.134 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcC
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKG 163 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~G 163 (602)
..+.+.++|..+-...+----.+.+...|...+.+.++.|-..+|+.+.++.+... ..... ....+.+.+-..-..+
T Consensus 54 ~v~~~~~iL~~~l~~~~~~~l~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~--~~~~~~~~~~l~~~i~~~L~~~ 131 (503)
T PF10508_consen 54 QVELICDILKRLLSALSPDSLLPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSE--GAAQLLVDNELLPLIIQCLRDP 131 (503)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCH--HHHHHhcCccHHHHHHHHHcCC
Confidence 34445556655444332222124477788888888888899989999888774321 11110 1345666666655566
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHH-----HHHHhhcCCC-CCCCcchHHHHHHHHHHhCCCC
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDI-----LDKVKMNLTP-DSPNYRTAIIALGHIAYNMPNK 237 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~I-----ie~l~~~L~~-~s~~l~t~L~sLg~Ia~~aP~~ 237 (602)
...-||.|+++|..++.... .+..+ +..+..-+.- ++..-.-.+..+..|+...|+.
T Consensus 132 d~~Va~~A~~~L~~l~~~~~-----------------~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~ 194 (503)
T PF10508_consen 132 DLSVAKAAIKALKKLASHPE-----------------GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEA 194 (503)
T ss_pred cHHHHHHHHHHHHHHhCCch-----------------hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHH
Confidence 67899999999966655432 22233 4444333332 2323345778888888888888
Q ss_pred chhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhh
Q psy2712 238 FPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVIVN 316 (602)
Q Consensus 238 fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~lL~~ 316 (602)
++.-...=+...+++++- +++...|+-++.+++.-......-. -.-+.+++.|..+|..
T Consensus 195 ~~~~~~sgll~~ll~eL~--------------------~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~ 254 (503)
T PF10508_consen 195 AEAVVNSGLLDLLLKELD--------------------SDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQD 254 (503)
T ss_pred HHHHHhccHHHHHHHHhc--------------------CccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhc
Confidence 765543213344444331 0134668888888887766222222 1223456656666533
No 21
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=80.18 E-value=6.2 Score=51.68 Aligned_cols=117 Identities=15% Similarity=0.101 Sum_probs=79.3
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC--CC-CCchHHHHHHHhcccCCccchHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC--HF-MQQSSIQALLKMLTIEDEIVAPLV 128 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~--lF-k~~e~~~~L~~ll~~~d~~v~e~~ 128 (602)
++....|+.|+..+... + .+...+.|..|....+...+. ++ -....++-|++++...+..+++.+
T Consensus 647 vv~agaIpPLV~LLss~---~---------~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~A 714 (2102)
T PLN03200 647 LATDEIINPCIKLLTNN---T---------EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQA 714 (2102)
T ss_pred HHHcCCHHHHHHHHhcC---C---------hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHH
Confidence 34556788888888632 1 123445555555544433332 11 123478889999998888899999
Q ss_pred HHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q psy2712 129 FSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDS 182 (602)
Q Consensus 129 Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~ 182 (602)
+.+|+++.++......+. ....++.|.++-.+|+|+.=++|+.+|..++...
T Consensus 715 l~ALanLl~~~e~~~ei~--~~~~I~~Lv~lLr~G~~~~k~~Aa~AL~~L~~~~ 766 (2102)
T PLN03200 715 VCALANLLSDPEVAAEAL--AEDIILPLTRVLREGTLEGKRNAARALAQLLKHF 766 (2102)
T ss_pred HHHHHHHHcCchHHHHHH--hcCcHHHHHHHHHhCChHHHHHHHHHHHHHHhCC
Confidence 999999986532222233 3456899999999999999999999996655443
No 22
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=79.61 E-value=79 Score=33.21 Aligned_cols=148 Identities=16% Similarity=0.173 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCH--
Q psy2712 280 RCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSP-- 357 (602)
Q Consensus 280 ~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~-- 357 (602)
..+..|+|++.-.|+--+ +.|...+.+|...+ ..|+ ..+|..|-+++.-+...-+.. .+..
T Consensus 42 ~vR~~al~cLGl~~Lld~---~~a~~~l~l~~~~~-~~~~------------~~v~~~al~~l~Dll~~~g~~-~~~~~~ 104 (298)
T PF12719_consen 42 AVRELALKCLGLCCLLDK---ELAKEHLPLFLQAL-QKDD------------EEVKITALKALFDLLLTHGID-IFDSES 104 (298)
T ss_pred HHHHHHHHHHHHHHHhCh---HHHHHHHHHHHHHH-HhCC------------HHHHHHHHHHHHHHHHHcCch-hccchh
Confidence 557888888877766543 56888899999888 3332 467788888888887743322 2221
Q ss_pred --------HHHH-HHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCC--hhhHHHHhhccccchH----HhHHHHHHHH
Q psy2712 358 --------EQFY-NLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLP--LDFMGFYALGGLEEEK----KLKMSTEKAL 422 (602)
Q Consensus 358 --------~~f~-~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp--~rf~~l~fL~A~EPd~----elk~~v~~~~ 422 (602)
..+. -+...+.++.++||..-++-+.|.+-.++ ++ ++-++-+.+..++|.. .+|+-..-..
T Consensus 105 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~----i~~~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ff 180 (298)
T PF12719_consen 105 DNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGR----ISDPPKVLSRLLLLYFNPSTEDNQRLRQCLSVFF 180 (298)
T ss_pred ccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCC----CCcHHHHHHHHHHHHcCcccCCcHHHHHHHHHHH
Confidence 1222 34457778899999999999999998887 64 4778877777777765 4444432222
Q ss_pred ----HcC--CCCCchhHHHHHhhhccCCCC-CC
Q psy2712 423 ----AQL--PNFLPDFMLVFAIPVLTHTPA-YT 448 (602)
Q Consensus 423 ----~~~--~~~~pEy~L~rLIhLLAHHPD-F~ 448 (602)
... .+...+.++...+..++..|+ +.
T Consensus 181 p~y~~s~~~~Q~~l~~~f~~~l~~~~~~~~~~~ 213 (298)
T PF12719_consen 181 PVYASSSPENQERLAEAFLPTLRTLSNAPDELD 213 (298)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 111 133345555555555555544 43
No 23
>KOG2259|consensus
Probab=78.82 E-value=1.5e+02 Score=35.25 Aligned_cols=238 Identities=20% Similarity=0.205 Sum_probs=126.5
Q ss_pred hCCCCCCC-chHHHH-HHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy2712 99 VYPCHFMQ-QSSIQA-LLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLY 176 (602)
Q Consensus 99 ~~P~lFk~-~e~~~~-L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~ 176 (602)
++|.-..+ .++.-. |+.+....|..|=..+++.|-.++. -+. ..+..+.+..+......---=|-||++++
T Consensus 187 ~~~ss~~~d~~~~~~~l~~~~~~~D~~Vrt~A~eglL~L~e------g~k-L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~ 259 (823)
T KOG2259|consen 187 VSPSSLTHDREHAARGLIYLEHDQDFRVRTHAVEGLLALSE------GFK-LSKACYSRAVKHLSDDYEDVRKAAVQLVS 259 (823)
T ss_pred cCCCcccccHHHHHHHHHHHhcCCCcchHHHHHHHHHhhcc------ccc-ccHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 34444444 444444 7776666777765556666655551 121 22345555555544444333345566653
Q ss_pred HhcCCCc---ccccccccccCccchhhHHHHHHHHHhhcCCCCCCCc-chHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy2712 177 KNLGDSY---TIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNY-RTAIIALGHIAYNMPNKFPAVIKNTVSRKIVK 252 (602)
Q Consensus 177 a~~~~~~---~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l-~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk 252 (602)
. .++.- ..++..+ +....+.+.++|..+...+=.. .-+-..|| .|++.++++|-+.+=|
T Consensus 260 v-~gn~~p~~~e~e~~e--------~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG--------~~~~vSee~i~QTLdK 322 (823)
T KOG2259|consen 260 V-WGNRCPAPLERESEE--------EKLKDAAFSSVCRAVRDRSLSVRVEAAKALG--------EFEQVSEEIIQQTLDK 322 (823)
T ss_pred H-HHhcCCCcccchhhh--------hhhHHHHHHHHHHHHhcCceeeeehHHHHhc--------hHHHhHHHHHHHHHHH
Confidence 2 22210 0000000 2233344444444443222110 11122333 4566777878888777
Q ss_pred HHhccCC---cccc-----------ccCCCCccCCCCCH-H-------------HHHHHHHH--------HHHHHHhhcc
Q psy2712 253 ELLIKET---EESY-----------QYKKDWVFEEDLPN-E-------------VRCKMEGM--------KMMARWLLGL 296 (602)
Q Consensus 253 ~lLl~~~---~~~~-----------~~~~~W~~d~~l~~-e-------------~~aKi~aL--------K~lvn~Ll~~ 296 (602)
+++-+-+ +..+ ..+.+|.+| +|. + |-|=++|| +..|-.+..+
T Consensus 323 Klms~lRRkr~ahkrpk~l~s~GewSsGk~~~ad--vpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AAV~Sl~~L 400 (823)
T KOG2259|consen 323 KLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNAD--VPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAAVASLCSL 400 (823)
T ss_pred HHhhhhhhhhhcccchHHHHhcCCcccCcccccc--CchhhccccccccccccccceeeeechHHHHHHHHHHHHHHHHH
Confidence 7765211 1111 122456443 221 1 22323332 1223333333
Q ss_pred cc-hhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHH
Q psy2712 297 KA-HKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVR 375 (602)
Q Consensus 297 ~~-~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR 375 (602)
+- .+.+|.+.+.+|..++ ..+..-+||.|-.+|=+|+.. -.|..++...+.-.+.|.+.+||
T Consensus 401 a~ssP~FA~~aldfLvDMf-------------NDE~~~VRL~ai~aL~~Is~~----l~i~eeql~~il~~L~D~s~dvR 463 (823)
T KOG2259|consen 401 ATSSPGFAVRALDFLVDMF-------------NDEIEVVRLKAIFALTMISVH----LAIREEQLRQILESLEDRSVDVR 463 (823)
T ss_pred HcCCCCcHHHHHHHHHHHh-------------ccHHHHHHHHHHHHHHHHHHH----heecHHHHHHHHHHHHhcCHHHH
Confidence 32 2367888888888766 136778999999999999985 57778899999999999999999
Q ss_pred HHHH
Q psy2712 376 EIFA 379 (602)
Q Consensus 376 ~~Fl 379 (602)
...-
T Consensus 464 e~l~ 467 (823)
T KOG2259|consen 464 EALR 467 (823)
T ss_pred HHHH
Confidence 9853
No 24
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=78.74 E-value=30 Score=34.21 Aligned_cols=189 Identities=14% Similarity=0.167 Sum_probs=98.9
Q ss_pred CcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCc
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGT 84 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~ 84 (602)
+.|=..|.+.+..+....+... --...+.+++.++ .-+..++..+.+. ...
T Consensus 18 ~~~W~~r~~al~~L~~l~~~~~-~~~~~~~~~~~l~---------------~~~~~i~~~l~d~-------------Rs~ 68 (228)
T PF12348_consen 18 ESDWEERVEALQKLRSLIKGNA-PEDFPPDFVECLR---------------QLLDAIIKQLSDL-------------RSK 68 (228)
T ss_dssp -SSHHHHHHHHHHHHHHHHH-B------HHHHHHHH------------------HHHHH-S-HH----------------
T ss_pred ccCHHHHHHHHHHHHHHHHcCC-ccccHHHHHHHHH---------------HhHHHHHHHHhhh-------------HHH
Confidence 3445567777877777777661 1111234444441 1223333333322 334
Q ss_pred hhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHH-HHHHHHHHh
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQL-VPICQDMIE 161 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l-~~~Lk~~al 161 (602)
....|..++..++...+..|.+ +..+..|++.+.+....+.+.+-++|..+.++ .+ ....+ .+.+...+.
T Consensus 69 v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~------~~-~~~~~~~~~l~~~~~ 141 (228)
T PF12348_consen 69 VSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIES------CS-YSPKILLEILSQGLK 141 (228)
T ss_dssp HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTT------S--H--HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHH------CC-cHHHHHHHHHHHHHh
Confidence 6677899999999999999988 33444444444555566777777777777743 22 11234 778888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcch-HHHHHHHHHHhCCC
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRT-AIIALGHIAYNMPN 236 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t-~L~sLg~Ia~~aP~ 236 (602)
..+|..-..++.+|...+..-.. .++.-.....+..+++.++..+...++.... +-.++..+.+..|+
T Consensus 142 ~Kn~~vR~~~~~~l~~~l~~~~~-------~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 142 SKNPQVREECAEWLAIILEKWGS-------DSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp -S-HHHHHHHHHHHHHHHTT------------GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred CCCHHHHHHHHHHHHHHHHHccc-------hHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 88998777777777554443210 0000001123577888887777655544443 35556666555554
No 25
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=78.31 E-value=1e+02 Score=32.99 Aligned_cols=116 Identities=16% Similarity=0.128 Sum_probs=65.3
Q ss_pred HHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCccccccccc
Q psy2712 112 ALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDEN 191 (602)
Q Consensus 112 ~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~ 191 (602)
+.++.+.+.....=+.+|+.+.++-+.+..++.+-.....+...+.+....|++++...|.+++..++-.- |
T Consensus 47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltl--------g 118 (309)
T PF05004_consen 47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTL--------G 118 (309)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhc--------C
Confidence 33333334433333557777776644333444343334467889999999999998889988873221110 0
Q ss_pred ccCccchhhHHHHHHHHHhhcCCCCCC--Cc-chHHHHHHHHHHhCCCC
Q psy2712 192 SENGVRTVDLFVDILDKVKMNLTPDSP--NY-RTAIIALGHIAYNMPNK 237 (602)
Q Consensus 192 ~~~~~~~~~~~~~Iie~l~~~L~~~s~--~l-~t~L~sLg~Ia~~aP~~ 237 (602)
++ .....+|.++...+..-+..++. .. ...+.+||-++.+.-.-
T Consensus 119 ~g--~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d 165 (309)
T PF05004_consen 119 AG--EDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSD 165 (309)
T ss_pred CC--ccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCC
Confidence 00 01256666666666554544443 33 34566888887775443
No 26
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=77.73 E-value=26 Score=39.83 Aligned_cols=137 Identities=16% Similarity=0.097 Sum_probs=82.4
Q ss_pred hhHHHHHHHHHHHhhC---CCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 85 AGERGLKLLVMLSYVY---PCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~---P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
....+..-|..++... -.++.+.+.+..++.++.++|..|+..+.++|..+++++...+.+ ..+.+...|+++..
T Consensus 93 Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l--~~~~~~~~L~~l~~ 170 (503)
T PF10508_consen 93 VRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQL--FDSNLLSKLKSLMS 170 (503)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHH--hCcchHHHHHHHHh
Confidence 4444555566665444 334555778999999999889999999999999999764322111 12334888888888
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHH--HHHHHHhhcCCCCCC-CcchHHHHHHHHHHhCCCC
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFV--DILDKVKMNLTPDSP-NYRTAIIALGHIAYNMPNK 237 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~--~Iie~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~~ 237 (602)
..+..-=-.+..++..++..++.+ ..++. .+++.+...|+.++. -..+++..|+++|. .|+-
T Consensus 171 ~~~~~vR~Rv~el~v~i~~~S~~~-------------~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-~~~g 235 (503)
T PF10508_consen 171 QSSDIVRCRVYELLVEIASHSPEA-------------AEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-TPHG 235 (503)
T ss_pred ccCHHHHHHHHHHHHHHHhcCHHH-------------HHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc-ChhH
Confidence 855422122333443343333211 12233 377777777765332 24567777888888 5544
No 27
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=77.63 E-value=11 Score=33.50 Aligned_cols=49 Identities=24% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhcccCcCCcC---CHHHHHHHHHHHhcCchHHHHH--HHHHH
Q psy2712 332 AWMRLSAGCAMLKICEQKGVGDQY---SPEQFYNLSRLLIDEVPEVREI--FANKL 382 (602)
Q Consensus 332 srLRL~Aa~~lLKLA~~~~~~~~I---~~~~f~~La~lvqD~~~~VR~~--Fl~KL 382 (602)
+|.|..|..++-.+++.-+ ..+ -++.|..|+.++.|+.+.||.. ++++|
T Consensus 41 ~rVRy~AcEaL~ni~k~~~--~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 41 SRVRYYACEALYNISKVAR--GEILPYFNEIFDALCKLSADPDENVRSAAELLDRL 94 (97)
T ss_pred HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHH
Confidence 7999999999999987632 222 2468899999999999999986 55554
No 28
>KOG1061|consensus
Probab=76.85 E-value=38 Score=40.23 Aligned_cols=221 Identities=18% Similarity=0.200 Sum_probs=131.2
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCcc-chHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEI-VAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~-v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
+..-.+++-...|-...|.+|+. .++.+- ++.+||. +-..=|+++...+- .+..+ .+..-|+.||.+
T Consensus 294 e~qyvaLrNi~lil~~~p~~~~~--~~~~Ff--~kynDPiYvK~eKleil~~la~----~~nl~----qvl~El~eYate 361 (734)
T KOG1061|consen 294 EIQYVALRNINLILQKRPEILKV--EIKVFF--CKYNDPIYVKLEKLEILIELAN----DANLA----QVLAELKEYATE 361 (734)
T ss_pred hhhHHHHhhHHHHHHhChHHHHh--HhHeee--eecCCchhhHHHHHHHHHHHhh----HhHHH----HHHHHHHHhhhh
Confidence 45567888888899999999998 444332 3466764 33445888887771 12233 478889999999
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhh
Q psy2712 163 GTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAV 241 (602)
Q Consensus 163 GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~ 241 (602)
=++.-++-|||+|.. ..-+- +.. .+.+..+.+-++.+-.+ ..-.+.++-.|.+.+|..|+.-
T Consensus 362 vD~~fvrkaIraig~-~aik~---------------e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRkyP~~~~~v 424 (734)
T KOG1061|consen 362 VDVDFVRKAVRAIGR-LAIKA---------------EQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRKYPNKYESV 424 (734)
T ss_pred hCHHHHHHHHHHhhh-hhhhh---------------hhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhcCCCchhhh
Confidence 999999999999943 33322 111 34444444444444433 3447889999999999998533
Q ss_pred HHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCccc
Q psy2712 242 IKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLL 321 (602)
Q Consensus 242 ~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~ 321 (602)
+. .+-.+. ..|-+. + .|.-.+|++|--.+ .......+|..|+++--+
T Consensus 425 v~----------~l~~~~-------~sl~ep-----e-------ak~amiWilg~y~~--~i~~a~elL~~f~en~~d-- 471 (734)
T KOG1061|consen 425 VA----------ILCENL-------DSLQEP-----E-------AKAALIWILGEYAE--RIENALELLESFLENFKD-- 471 (734)
T ss_pred hh----------hhcccc-------cccCCh-----H-------HHHHHHHHHhhhhh--ccCcHHHHHHHHHhhccc--
Confidence 31 121111 233332 1 56667888876433 345556677777755322
Q ss_pred CCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHH-HHHHHhc-CchHHHHH
Q psy2712 322 QSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYN-LSRLLID-EVPEVREI 377 (602)
Q Consensus 322 ~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~-La~lvqD-~~~~VR~~ 377 (602)
-+..-+..|--++-+..||=+.. +.+.... |.+-++| .+++||.+
T Consensus 472 ----E~~~Vql~LLta~ik~Fl~~p~~-------tq~~l~~vL~~~~~d~~~~dlrDr 518 (734)
T KOG1061|consen 472 ----ETAEVQLELLTAAIKLFLKKPTE-------TQELLQGVLPLATADTDNPDLRDR 518 (734)
T ss_pred ----chHHHHHHHHHHHHHHHhcCCcc-------HHHHHHHHHhhhhccccChhhhhh
Confidence 13556666655555555555431 1223332 3444444 45678765
No 29
>KOG2023|consensus
Probab=76.78 E-value=18 Score=42.50 Aligned_cols=132 Identities=15% Similarity=0.198 Sum_probs=81.0
Q ss_pred chHHHHHHHhcccCCccchHHHHHHHHhhccC--CCCchhhh-hHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc
Q psy2712 107 QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKY--RPLGEVFK-EEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSY 183 (602)
Q Consensus 107 ~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~--k~~~~~~p-~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~ 183 (602)
++.+..|.+++...|....|+++.+|.++.-= .-+...++ +-..-+++++-+|....+|+.-++|+.|+-.+.....
T Consensus 127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~ 206 (885)
T KOG2023|consen 127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQT 206 (885)
T ss_pred hhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCc
Confidence 66889999999888888899999999999710 00000010 0023578999999999999999999999855444321
Q ss_pred ccccccccccCccchhhHHHHHHHHHhhcC-CCCCCCcch-HHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy2712 184 TIEVMDENSENGVRTVDLFVDILDKVKMNL-TPDSPNYRT-AIIALGHIAYNMPNKFPAVIKNTVSRKIVK 252 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L-~~~s~~l~t-~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk 252 (602)
+.+.......++.+ -.| ...++.... .=.+|..+....|+....|..+ |++|+++
T Consensus 207 ------------qal~~~iD~Fle~l-FalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~-IveyML~ 263 (885)
T KOG2023|consen 207 ------------QALYVHIDKFLEIL-FALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDN-IVEYMLQ 263 (885)
T ss_pred ------------HHHHHHHHHHHHHH-HHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHH-HHHHHHH
Confidence 11223333344443 222 222223222 2345666666677777777766 5566543
No 30
>KOG1060|consensus
Probab=76.46 E-value=1.9e+02 Score=35.13 Aligned_cols=237 Identities=15% Similarity=0.243 Sum_probs=135.5
Q ss_pred hhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccc--cccCcHHHHHHHhhhhcCCCCcccccCCCCCchh
Q psy2712 9 NVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHR--LTGNAIPILISYVDDCLNHGNLIDELGLHPGTAG 86 (602)
Q Consensus 9 ~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~--~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~ 86 (602)
.||.-+|.-|+=.|.|+ ++ -|+=-|||.- .--+-|=. .+.+-=.+|++.++..+.-.. +-=.+
T Consensus 134 sIRvp~IaPI~llAIk~--~~---~D~s~yVRk~--AA~AIpKLYsLd~e~k~qL~e~I~~LLaD~s--------plVvg 198 (968)
T KOG1060|consen 134 SIRVPMIAPIMLLAIKK--AV---TDPSPYVRKT--AAHAIPKLYSLDPEQKDQLEEVIKKLLADRS--------PLVVG 198 (968)
T ss_pred hcchhhHHHHHHHHHHH--Hh---cCCcHHHHHH--HHHhhHHHhcCChhhHHHHHHHHHHHhcCCC--------Ccchh
Confidence 46777888888899998 77 5777888432 11111111 222333356666554431111 11111
Q ss_pred HHHHHHHHHHHhhCCCCCCC-chHHHHHHHhcccCC--ccchHHHHHHHHhhccCC-CCchh------------------
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQ-QSSIQALLKMLTIED--EIVAPLVFSVLSFLGKYR-PLGEV------------------ 144 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~-~e~~~~L~~ll~~~d--~~v~e~~Lk~La~~~k~k-~~~~~------------------ 144 (602)
. -+ -.+-.+||+.|.= -.+.+.|..++.+=| ..++ .+.+|..++++. +-|..
T Consensus 199 s---Av-~AF~evCPerldLIHknyrklC~ll~dvdeWgQvv--lI~mL~RYAR~~l~~P~~~~~~~e~n~~~~~~~~~~ 272 (968)
T KOG1060|consen 199 S---AV-MAFEEVCPERLDLIHKNYRKLCRLLPDVDEWGQVV--LINMLTRYARHQLPDPTVVDSSLEDNGRSCNLKDKY 272 (968)
T ss_pred H---HH-HHHHHhchhHHHHhhHHHHHHHhhccchhhhhHHH--HHHHHHHHHHhcCCCccccccccccCcccccccccc
Confidence 1 11 2356678877654 447888888887422 2332 677888777542 11100
Q ss_pred ----hh----hHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCC
Q psy2712 145 ----FK----EEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPD 216 (602)
Q Consensus 145 ----~p----~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~ 216 (602)
.| ...+.|.+..+-+-...+|.---.++++.+.+.+..+ ...|++.++.-|-..
T Consensus 273 ~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~------------------~~~i~kaLvrLLrs~ 334 (968)
T KOG1060|consen 273 NEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ------------------VTKIAKALVRLLRSN 334 (968)
T ss_pred cccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH------------------HHHHHHHHHHHHhcC
Confidence 12 1223344444444444456544444555555554422 256677776666666
Q ss_pred CCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcc
Q psy2712 217 SPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGL 296 (602)
Q Consensus 217 s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~ 296 (602)
++..-..|+.++.|....|..|+.+.+.+ ....+ +.++.|+|=|.+|+|..-.
T Consensus 335 ~~vqyvvL~nIa~~s~~~~~lF~P~lKsF---------fv~ss-----------------Dp~~vk~lKleiLs~La~e- 387 (968)
T KOG1060|consen 335 REVQYVVLQNIATISIKRPTLFEPHLKSF---------FVRSS-----------------DPTQVKILKLEILSNLANE- 387 (968)
T ss_pred CcchhhhHHHHHHHHhcchhhhhhhhhce---------EeecC-----------------CHHHHHHHHHHHHHHHhhh-
Confidence 66777889999999999999999999763 22222 2467889988888887422
Q ss_pred cchhhhHHHHHHHHHHHHh
Q psy2712 297 KAHKESAQKTFRMLNAVIV 315 (602)
Q Consensus 297 ~~~~~~a~~v~kLL~~lL~ 315 (602)
..+.-+||=|.+.|.
T Consensus 388 ----sni~~ILrE~q~YI~ 402 (968)
T KOG1060|consen 388 ----SNISEILRELQTYIK 402 (968)
T ss_pred ----ccHHHHHHHHHHHHh
Confidence 235556666666663
No 31
>KOG1020|consensus
Probab=73.77 E-value=2.8e+02 Score=35.95 Aligned_cols=245 Identities=15% Similarity=0.181 Sum_probs=129.0
Q ss_pred chhHHHHHHHhhh--cccccccccccCcHHHHHHHhhhhcCC-------CCcccccCCCCCchhHHHHHHHHHHHhhCCC
Q psy2712 32 SEDLLTFVKERTL--DKKVMPHRLTGNAIPILISYVDDCLNH-------GNLIDELGLHPGTAGERGLKLLVMLSYVYPC 102 (602)
Q Consensus 32 ~~~l~~~~~~~~~--~kk~spl~~N~ssI~~Li~~v~~~~~g-------~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~ 102 (602)
.++|+--+..+.+ .++.+.--++.+++...++.+..|..- ..+.++. .+.-.-..+..|..+|++.|.
T Consensus 994 ~eqLl~~ilk~~~~~~~~~~~~~v~~~~v~~~~~L~~~cl~~~i~ev~~~~~~~~~---~~~~~~~~lstL~~FskirP~ 1070 (1692)
T KOG1020|consen 994 LEQLLDHILKFYLLKTMKESVKPVALAKVTHVLNLLTHCLVEKISEVESDDMNEEE---SEVRLLAYLSTLFVFSKIRPQ 1070 (1692)
T ss_pred HHHHHHHHHHHHHhhhhhhhhhHHHHhhcchHHHHHHHHHHHHHHhhhhHhhhccc---chhHHHHHHHHHHHHHhcCch
Confidence 3666666555544 366666667778888888888766411 0111111 223344678889999999999
Q ss_pred CCC-CchHHHHHHHhcccC-----CccchHHHHHHHHhhccCCCCchhhhh-HHhHHHH-HHHHHHhcCCHHHHHHHHHH
Q psy2712 103 HFM-QQSSIQALLKMLTIE-----DEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVP-ICQDMIEKGTPKQAKQAIRC 174 (602)
Q Consensus 103 lFk-~~e~~~~L~~ll~~~-----d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~-~Lk~~al~GtP~qAK~Avr~ 174 (602)
+|- . |+..|-=-+... +..+...++++|-.+- |+....+. .-..+-+ .|+.+...|.. .--+||.|
T Consensus 1071 Llt~k--hv~tL~PYL~s~~~t~~~~~fl~~vi~Ile~Vl---Plv~~~sesfL~sLEe~L~~~i~k~g~a-~V~~~vsC 1144 (1692)
T KOG1020|consen 1071 LLTKK--HVITLQPYLTSKASTIEEAQFLYYVIQILECVL---PLVANPSESFLASLEEDLLKRIVKMGMA-TVVEAVSC 1144 (1692)
T ss_pred hccHH--HHHHhhhHHhccccchHHHHHHHHHHHHHHHHh---hhhccchHHHHHHHHHHHHHHHHhcchH-HHHHHHHH
Confidence 999 6 777776555432 2233333555554443 22221221 0112323 44555555654 44589999
Q ss_pred HHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC-CC-----------CCcchHHHHHHHHHHhC--C-----
Q psy2712 175 LYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP-DS-----------PNYRTAIIALGHIAYNM--P----- 235 (602)
Q Consensus 175 L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~-~s-----------~~l~t~L~sLg~Ia~~a--P----- 235 (602)
++++++.-. . .-....+++....+.|+. .+ +-+.-.|-++|-+.|+. |
T Consensus 1145 l~sl~~k~~-~------------~~~~v~~cf~~~~k~le~~k~s~~en~~~~~~p~l~RsiftlG~l~Ryfdf~~~~~~ 1211 (1692)
T KOG1020|consen 1145 LGSLATKRT-D------------GAKVVKACFSCYLKLLEVIKSSNNENADIVNFPKLQRSIFTLGLLSRYFDFPKPSND 1211 (1692)
T ss_pred HHHHHhhhc-c------------chHHHHHHHHHHHHHHHHHHhccccccchhhhHHHHHHHHHHHHHHHhccCCCccCC
Confidence 988776411 0 023344444444444432 11 22344567788888853 1
Q ss_pred -CCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q psy2712 236 -NKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVI 314 (602)
Q Consensus 236 -~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL 314 (602)
..|.+... .+-+.+++- |+.=+ .+ .....|..||+-|...|..+..= -..+-+..++..+|
T Consensus 1212 g~~~~~~~~-~~~e~v~~l-L~~f~-----------k~----~~~~lR~~al~~Lg~~ci~hp~l-~~~~~v~nly~~il 1273 (1692)
T KOG1020|consen 1212 GKTFLQEGE-TLKEKVLIL-LMYFS-----------KD----KDGELRRKALINLGFICIQHPSL-FTSREVLNLYDEIL 1273 (1692)
T ss_pred Cccchhhhh-hHHHHHHHH-HHHHH-----------Hh----hhhHHHHHHHHHHHHHHhhCchh-hhhHHHHHHHHHHH
Confidence 12332332 244444432 22111 00 01245788899999998876431 12345556666666
Q ss_pred hh
Q psy2712 315 VN 316 (602)
Q Consensus 315 ~~ 316 (602)
..
T Consensus 1274 a~ 1275 (1692)
T KOG1020|consen 1274 AD 1275 (1692)
T ss_pred hh
Confidence 44
No 32
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=73.75 E-value=15 Score=31.54 Aligned_cols=72 Identities=18% Similarity=0.157 Sum_probs=52.0
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDS 182 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~ 182 (602)
.++.|++++.+.++.+.+.++.+|.+++... ++.... .....++.|.++-..++|+-.++|+.+|..++.+.
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~--~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~ 80 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGN--NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGP 80 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCc
Confidence 6778888888777778888999999998431 222221 22356777888777788999999999996665543
No 33
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=71.99 E-value=41 Score=32.55 Aligned_cols=87 Identities=24% Similarity=0.158 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHH-HHHHHHHHhcCCH
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQL-VPICQDMIEKGTP 165 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l-~~~Lk~~al~GtP 165 (602)
..+.-.|..+...||.+... +++.|...+.++++.|=..+|.+|++...-.- .. ....+ ...+.- ...-+|
T Consensus 6 ~n~i~~l~DL~~r~~~~ve~--~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~----ik-~k~~l~~~~l~~-l~D~~~ 77 (178)
T PF12717_consen 6 NNAIIALGDLCIRYPNLVEP--YLPNLYKCLRDEDPLVRKTALLVLSHLILEDM----IK-VKGQLFSRILKL-LVDENP 77 (178)
T ss_pred HHHHHHHHHHHHhCcHHHHh--HHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCc----ee-ehhhhhHHHHHH-HcCCCH
Confidence 34667788889999999999 99999999999999888889999999863211 11 12223 444432 244457
Q ss_pred HHHHHHHHHHHHhcCC
Q psy2712 166 KQAKQAIRCLYKNLGD 181 (602)
Q Consensus 166 ~qAK~Avr~L~a~~~~ 181 (602)
.-...|..++..+...
T Consensus 78 ~Ir~~A~~~~~e~~~~ 93 (178)
T PF12717_consen 78 EIRSLARSFFSELLKK 93 (178)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 7777777777544444
No 34
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=71.46 E-value=16 Score=30.28 Aligned_cols=86 Identities=19% Similarity=0.277 Sum_probs=52.3
Q ss_pred HHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhcc
Q psy2712 58 IPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGK 137 (602)
Q Consensus 58 I~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k 137 (602)
|+.|++.+.+. . .......+.+.|. -+.+++.+..|++++.++++.|...++.+|..++
T Consensus 1 i~~L~~~l~~~----~--------~~~vr~~a~~~L~--------~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~- 59 (88)
T PF13646_consen 1 IPALLQLLQND----P--------DPQVRAEAARALG--------ELGDPEAIPALIELLKDEDPMVRRAAARALGRIG- 59 (88)
T ss_dssp HHHHHHHHHTS----S--------SHHHHHHHHHHHH--------CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-
T ss_pred CHHHHHHHhcC----C--------CHHHHHHHHHHHH--------HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-
Confidence 67788888422 1 1223344555554 3345688999999998888888887888777665
Q ss_pred CCCCchhhhhHHhHHHHHHHHHHhcCCHHH-HHHHHHHH
Q psy2712 138 YRPLGEVFKEEMKQLVPICQDMIEKGTPKQ-AKQAIRCL 175 (602)
Q Consensus 138 ~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q-AK~Avr~L 175 (602)
. ....+.|.+......... -..|+..|
T Consensus 60 -------~----~~~~~~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 60 -------D----PEAIPALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp -------H----HHTHHHHHHHHTC-SSHHHHHHHHHHH
T ss_pred -------C----HHHHHHHHHHHcCCCcHHHHHHHHhhc
Confidence 1 235556666666654333 24455544
No 35
>KOG1078|consensus
Probab=70.69 E-value=2.5e+02 Score=34.00 Aligned_cols=233 Identities=17% Similarity=0.185 Sum_probs=121.3
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHH
Q psy2712 88 RGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQ 167 (602)
Q Consensus 88 ~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q 167 (602)
.+......+...+|..+.+ .+..|--++....+.+==.+.++|.+++. +.|... ..-..-|+.+...-+..-
T Consensus 264 EaArai~~l~~~~~r~l~p--avs~Lq~flssp~~~lRfaAvRtLnkvAm--~~P~~v----~~cN~elE~lItd~NrsI 335 (865)
T KOG1078|consen 264 EAARAIVSLPNTNSRELAP--AVSVLQLFLSSPKVALRFAAVRTLNKVAM--KHPQAV----TVCNLDLESLITDSNRSI 335 (865)
T ss_pred HHHHHHhhccccCHhhcch--HHHHHHHHhcCcHHHHHHHHHHHHHHHHH--hCCccc----cccchhHHhhhcccccch
Confidence 4445556678888888888 66666666655444444457788887773 223211 123345666666677777
Q ss_pred HHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCch---hhHHH
Q psy2712 168 AKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFP---AVIKN 244 (602)
Q Consensus 168 AK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe---~~~~~ 244 (602)
|-||+..|.+ ++...+ .+-+..-+...+..++ ++.......++..+....|.... +...+
T Consensus 336 at~AITtLLK-TG~e~s--------------v~rLm~qI~~fv~dis--DeFKivvvdai~sLc~~fp~k~~~~m~FL~~ 398 (865)
T KOG1078|consen 336 ATLAITTLLK-TGTESS--------------VDRLMKQISSFVSDIS--DEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN 398 (865)
T ss_pred hHHHHHHHHH-hcchhH--------------HHHHHHHHHHHHHhcc--ccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7788887754 333321 2222333333333332 22333333333333333443221 11111
Q ss_pred H------------HHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q psy2712 245 T------------VSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNA 312 (602)
Q Consensus 245 i------------I~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~ 312 (602)
+ |..-|+..+- ..+ .+|..||--++-....+. .-+-..++|.
T Consensus 399 ~Lr~eGg~e~K~aivd~Ii~iie-------------~~p--------dsKe~~L~~LCefIEDce----~~~i~~rILh- 452 (865)
T KOG1078|consen 399 MLREEGGFEFKRAIVDAIIDIIE-------------ENP--------DSKERGLEHLCEFIEDCE----FTQIAVRILH- 452 (865)
T ss_pred HHHhccCchHHHHHHHHHHHHHH-------------hCc--------chhhHHHHHHHHHHHhcc----chHHHHHHHH-
Confidence 0 1222221110 001 235555555554443332 2222333343
Q ss_pred HHhhcCcccCCCCCCHH-----------HHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHH
Q psy2712 313 VIVNKGDLLQSDKMSKQ-----------EMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREI 377 (602)
Q Consensus 313 lL~~~Gel~~~~~t~~~-----------~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~ 377 (602)
++..+|-.... |.. +-++.|.+|-.++=|...+ +....|..-..|-.-+.|...+||.+
T Consensus 453 lLG~EgP~a~~---Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~---~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 453 LLGKEGPKAPN---PSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ---DVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred HHhccCCCCCC---cchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC---CCCccccHHHHHHHHhcCchHHHHHH
Confidence 44566654433 222 2456799999999998843 34455557778888999999999987
No 36
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=68.77 E-value=1.2e+02 Score=31.70 Aligned_cols=112 Identities=12% Similarity=0.096 Sum_probs=69.2
Q ss_pred chHHHHHHHhcc-cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCccc
Q psy2712 107 QSSIQALLKMLT-IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTI 185 (602)
Q Consensus 107 ~e~~~~L~~ll~-~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~ 185 (602)
.++++.|+.++. .+||.+-+.++-++...+.|.... .+- .+..-++.+.++--.++|+.-..|+.+|..++.+.+
T Consensus 11 ~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq-~~I-r~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e-- 86 (254)
T PF04826_consen 11 AQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQ-DII-RDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDE-- 86 (254)
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHH-HHH-HHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--
Confidence 568899999988 568999998999999887552211 111 112347788888888899877889999955554443
Q ss_pred ccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHH
Q psy2712 186 EVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIA 231 (602)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia 231 (602)
.-.+.+.+...+++.++.. ..+++-..+.|..|..+.
T Consensus 87 --------n~~~Ik~~i~~Vc~~~~s~-~lns~~Q~agLrlL~nLt 123 (254)
T PF04826_consen 87 --------NQEQIKMYIPQVCEETVSS-PLNSEVQLAGLRLLTNLT 123 (254)
T ss_pred --------hHHHHHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHccC
Confidence 1122345556666655332 223433444555555553
No 37
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=68.60 E-value=1.1e+02 Score=35.10 Aligned_cols=60 Identities=17% Similarity=0.280 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHH-hcCchHHHHHHHHHH
Q psy2712 304 QKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLL-IDEVPEVREIFANKL 382 (602)
Q Consensus 304 ~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lv-qD~~~~VR~~Fl~KL 382 (602)
.++..+|+.|+.+.++ + ..+|++|...|++- .| ++..+..++..+ .+++.||+.-....|
T Consensus 557 ~~v~~~l~~I~~n~~e-------~----~EvRiaA~~~lm~~--~P------~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 557 EKVREILLPIFMNTTE-------D----PEVRIAAYLILMRC--NP------SPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHHHHHHHHHH-TTS------------HHHHHHHHHHHHHT-----------HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCC-------C----hhHHHHHHHHHHhc--CC------CHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 4566666777766655 1 22788887777663 12 244666666533 577788877665554
No 38
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=68.14 E-value=56 Score=39.00 Aligned_cols=158 Identities=18% Similarity=0.170 Sum_probs=93.2
Q ss_pred hhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhh--CCCCCCCchHHHHHHHhccc-
Q psy2712 43 TLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYV--YPCHFMQQSSIQALLKMLTI- 119 (602)
Q Consensus 43 ~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~--~P~lFk~~e~~~~L~~ll~~- 119 (602)
+++...++.+.+...||.|+.++.+ .+....++.+|-++|.. +=.+|...+.+..|++++..
T Consensus 359 Sfd~~~R~~mV~~GlIPkLv~LL~d---------------~~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~ 423 (708)
T PF05804_consen 359 SFDPELRSQMVSLGLIPKLVELLKD---------------PNFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLEN 423 (708)
T ss_pred CcCHHHHHHHHHCCCcHHHHHHhCC---------------CchHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhC
Confidence 6777777888888888888887752 23556799999999974 44577766789999998764
Q ss_pred CCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchh
Q psy2712 120 EDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTV 199 (602)
Q Consensus 120 ~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~ 199 (602)
.++.+-..++..+.+++..++..+.+- ...-.+.|.+.|..++- ....++|--++...+. .+
T Consensus 424 ~~~~v~~eliaL~iNLa~~~rnaqlm~--~g~gL~~L~~ra~~~~D---~lLlKlIRNiS~h~~~-------------~k 485 (708)
T PF05804_consen 424 SEEEVQLELIALLINLALNKRNAQLMC--EGNGLQSLMKRALKTRD---PLLLKLIRNISQHDGP-------------LK 485 (708)
T ss_pred CCccccHHHHHHHHHHhcCHHHHHHHH--hcCcHHHHHHHHHhccc---HHHHHHHHHHHhcCch-------------HH
Confidence 344443336666677775443333222 12234566666777653 1223444222333211 24
Q ss_pred hHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhC
Q psy2712 200 DLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNM 234 (602)
Q Consensus 200 ~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~a 234 (602)
..|.+-+..++.-+..++ .---.+-+||.++-..
T Consensus 486 ~~f~~~i~~L~~~v~~~~-~ee~~vE~LGiLaNL~ 519 (708)
T PF05804_consen 486 ELFVDFIGDLAKIVSSGD-SEEFVVECLGILANLT 519 (708)
T ss_pred HHHHHHHHHHHHHhhcCC-cHHHHHHHHHHHHhcc
Confidence 556667776666554433 2233455666666665
No 39
>KOG2023|consensus
Probab=68.02 E-value=2.2e+02 Score=33.92 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=100.5
Q ss_pred cccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHH
Q psy2712 53 LTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFS 130 (602)
Q Consensus 53 ~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk 130 (602)
|-..-.++++-.+++.. +.. .=...|++.=-|-.|+.-|=.-|-+ ++.+.-|+.++.++.|-|=..++=
T Consensus 386 f~~elL~~l~PlLk~~L-~~~--------~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip~l~~~L~DKkplVRsITCW 456 (885)
T KOG2023|consen 386 FGDELLPILLPLLKEHL-SSE--------EWKVREAGVLALGAIAEGCMQGFVPHLPELIPFLLSLLDDKKPLVRSITCW 456 (885)
T ss_pred hHHHHHHHHHHHHHHHc-Ccc--------hhhhhhhhHHHHHHHHHHHhhhcccchHHHHHHHHHHhccCccceeeeeee
Confidence 33445566666676652 111 1224455666677788877777777 456666667777766755555788
Q ss_pred HHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHh
Q psy2712 131 VLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVK 210 (602)
Q Consensus 131 ~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~ 210 (602)
+|+.+++|-- .+.-....+.+.+-|.+-.+.|+-+--..|....+.+-.+ ++..+..++..|++.++
T Consensus 457 TLsRys~wv~-~~~~~~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~------------A~~eLVp~l~~IL~~l~ 523 (885)
T KOG2023|consen 457 TLSRYSKWVV-QDSRDEYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEE------------AGEELVPYLEYILDQLV 523 (885)
T ss_pred eHhhhhhhHh-cCChHhhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHh------------ccchhHHHHHHHHHHHH
Confidence 8898887721 1111112223334444555666653222333333222111 23445778999999998
Q ss_pred hcC-CCCCCCcchHHHHHHHHHHhCCCCchhhH
Q psy2712 211 MNL-TPDSPNYRTAIIALGHIAYNMPNKFPAVI 242 (602)
Q Consensus 211 ~~L-~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~ 242 (602)
..+ .|...+++--.-++|.+|-...+......
T Consensus 524 ~af~kYQ~KNLlILYDAIgtlAdsvg~~Ln~~~ 556 (885)
T KOG2023|consen 524 FAFGKYQKKNLLILYDAIGTLADSVGHALNKPA 556 (885)
T ss_pred HHHHHHhhcceehHHHHHHHHHHHHHHhcCcHH
Confidence 888 67888999889999999987766655443
No 40
>KOG0413|consensus
Probab=67.90 E-value=51 Score=40.43 Aligned_cols=141 Identities=17% Similarity=0.202 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHH
Q psy2712 282 KMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFY 361 (602)
Q Consensus 282 Ki~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~ 361 (602)
+-.|+=+|++.|+++. ..|++.+-||..=|+- .+..-+|=---.+|=-+|. +|-..+.- -.-
T Consensus 948 ra~~vvTlakmcLah~---~LaKr~~P~lvkeLe~------------~~~~aiRnNiV~am~D~C~--~YTam~d~-YiP 1009 (1529)
T KOG0413|consen 948 RAVGVVTLAKMCLAHD---RLAKRLMPMLVKELEY------------NTAHAIRNNIVLAMGDICS--SYTAMTDR-YIP 1009 (1529)
T ss_pred HHHHHHHHHHHHhhhh---HHHHHHHHHHHHHHHh------------hhHHHHhcceeeeehhhHH--HHHHHHHH-hhH
Confidence 4567788999998864 4566666666654421 1223334333334445554 35333221 333
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHHHHHHHHcCCCCCchhHHHHHhhhc
Q psy2712 362 NLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVL 441 (602)
Q Consensus 362 ~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~v~~~~~~~~~~~pEy~L~rLIhLL 441 (602)
.++.-..|||+-||+.=+.-|...|+.+- .||.+ |-++-|++.+|
T Consensus 1010 ~I~~~L~Dp~~iVRrqt~ilL~rLLq~~~------vKw~G-----------------------------~Lf~Rf~l~l~ 1054 (1529)
T KOG0413|consen 1010 MIAASLCDPSVIVRRQTIILLARLLQFGI------VKWNG-----------------------------ELFIRFMLALL 1054 (1529)
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHhhhh------hhcch-----------------------------hhHHHHHHHHc
Confidence 67788899999999999999999888765 44444 33455566666
Q ss_pred cCCCCCCCcccHHHHHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHh
Q psy2712 442 THTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQM 490 (602)
Q Consensus 442 AHHPDF~~~~d~~~L~~~~~yL~FyLe~lat~~~eN~sl~f~~~i~erI 490 (602)
--|||. .+.-.||+..|... +|- ..||.+++|-|
T Consensus 1055 D~~edI------------r~~a~f~~~~vL~~--~~P-~~f~~~FVe~i 1088 (1529)
T KOG0413|consen 1055 DANEDI------------RNDAKFYISEVLQS--EEP-NFFPLNFVEYI 1088 (1529)
T ss_pred ccCHHH------------HHHHHHHHHHHHhh--cCc-cchHHHHHHHH
Confidence 556654 33346777777664 332 23455555544
No 41
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=67.70 E-value=35 Score=32.91 Aligned_cols=140 Identities=19% Similarity=0.162 Sum_probs=90.3
Q ss_pred ccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhC-CCCCCC--chHHHHHHHhccc-CCccchHHHH
Q psy2712 54 TGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVY-PCHFMQ--QSSIQALLKMLTI-EDEIVAPLVF 129 (602)
Q Consensus 54 N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~--~e~~~~L~~ll~~-~d~~v~e~~L 129 (602)
+++.+..+..++.+...++. ....-.|..|+..+...+ |++|.. +.-++.|+..+.. +.+.+.+.++
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~---------~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai 89 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKS---------AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAI 89 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCC---------hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 67788888888877654443 224457999999999998 999955 5556666666664 3455666677
Q ss_pred HHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHH
Q psy2712 130 SVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKV 209 (602)
Q Consensus 130 k~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l 209 (602)
.+|+.+-.+ ....|...++ .+||.-.|+..-+| .+..+
T Consensus 90 ~~L~~l~~~---~~~~p~l~Re----------i~tp~l~~~i~~ll-~l~~~---------------------------- 127 (165)
T PF08167_consen 90 ITLTRLFDL---IRGKPTLTRE----------IATPNLPKFIQSLL-QLLQD---------------------------- 127 (165)
T ss_pred HHHHHHHHH---hcCCCchHHH----------HhhccHHHHHHHHH-HHHhc----------------------------
Confidence 777766421 1123422221 14666666655555 32211
Q ss_pred hhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy2712 210 KMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVK 252 (602)
Q Consensus 210 ~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk 252 (602)
.....+.|.+|+.+-+.+|..|-.+... |.++++.
T Consensus 128 -------~~~~~~~l~~L~~ll~~~ptt~rp~~~k-i~~~l~~ 162 (165)
T PF08167_consen 128 -------SSCPETALDALATLLPHHPTTFRPFANK-IESALLS 162 (165)
T ss_pred -------cccHHHHHHHHHHHHHHCCccccchHHH-HHHHHHH
Confidence 2345678889999999999999888877 6666643
No 42
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=67.31 E-value=16 Score=30.14 Aligned_cols=55 Identities=27% Similarity=0.341 Sum_probs=39.3
Q ss_pred HHHHHHhc-ccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy2712 110 IQALLKML-TIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLY 176 (602)
Q Consensus 110 ~~~L~~ll-~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~ 176 (602)
++.|++.+ .++++.+-..++++|..++ .....+.|.+++...+|.-...|+..|.
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~ 56 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG------------DPEAIPALIELLKDEDPMVRRAAARALG 56 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT------------HHHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC------------CHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 45677877 5667766666777776443 1246777888888888988888999993
No 43
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=65.87 E-value=1.2e+02 Score=31.59 Aligned_cols=125 Identities=14% Similarity=0.162 Sum_probs=70.9
Q ss_pred CcchhhH---HHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccc------------cccccCcHHHHHHHhhhhc
Q psy2712 5 DTDENVR---YEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMP------------HRLTGNAIPILISYVDDCL 69 (602)
Q Consensus 5 d~~~~~r---~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~sp------------l~~N~ssI~~Li~~v~~~~ 69 (602)
+.|+.+| .+.+..++..-.+|.---..-.-|++|..+|+-|..+.. -.+..+.+..+++.+.+..
T Consensus 10 sed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~~~i~~~l~~~~ 89 (262)
T PF14500_consen 10 SEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESAVKILRSLFQNV 89 (262)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhHHHHHHHHHHhC
Confidence 5788999 556666776666552111011457889999976665531 1244445555555554321
Q ss_pred CCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcc-cCCccchHHHHHHHHhhc
Q psy2712 70 NHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLT-IEDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 70 ~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~-~~d~~v~e~~Lk~La~~~ 136 (602)
. ............-++|..+-..++.-.+. ++.+..++.++. +.||+-.-.+.+++..+.
T Consensus 90 ~-------~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 90 D-------VQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred C-------hhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 0 11113344556777888777776654443 567888888877 668753333444444443
No 44
>KOG1241|consensus
Probab=64.05 E-value=3.3e+02 Score=32.95 Aligned_cols=137 Identities=12% Similarity=0.183 Sum_probs=77.5
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC---CCCCcch-HHHHHHHHHHhCCCCch
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP---DSPNYRT-AIIALGHIAYNMPNKFP 239 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~---~s~~l~t-~L~sLg~Ia~~aP~~fe 239 (602)
.|+-|--+-..+..+...-..+..+ .|.+++. ..+|..|+..+++--+. +..++++ ...+|+++-+++|+...
T Consensus 461 ePrva~N~CWAf~~Laea~~eA~~s-~~qt~~~--t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy 537 (859)
T KOG1241|consen 461 EPRVASNVCWAFISLAEAAYEAAVS-NGQTDPA--TPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVY 537 (859)
T ss_pred CchHHHHHHHHHHHHHHHHHHhccC-CCCCCcc--chhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHH
Confidence 5765555545544443222222111 1444444 36788999998776654 2345665 58999999999998876
Q ss_pred hhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHH-HHHHHhhc----ccchh-hhHHHHHHHHHHH
Q psy2712 240 AVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMK-MMARWLLG----LKAHK-ESAQKTFRMLNAV 313 (602)
Q Consensus 240 ~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK-~lvn~Ll~----~~~~~-~~a~~v~kLL~~l 313 (602)
.-.-. +..+|+++|=..- ..+.++.+.+++..-|. .+++.|-+ ...+- +.++.++.+|..+
T Consensus 538 ~~v~~-~~l~il~kl~q~i------------~~~~l~~~dr~q~~eLQs~Lc~~Lq~i~rk~~~~~~~~~d~iM~lflri 604 (859)
T KOG1241|consen 538 PMVQK-LTLVILEKLDQTI------------SSQILSLADRAQLNELQSLLCNTLQSIIRKVGSDIREVSDQIMGLFLRI 604 (859)
T ss_pred HHHHH-HHHHHHHHHHHHH------------HHHhccHhhHHHHHHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHH
Confidence 65555 4556655441110 01223444455544333 22333322 22222 7899999999999
Q ss_pred Hhh
Q psy2712 314 IVN 316 (602)
Q Consensus 314 L~~ 316 (602)
+.+
T Consensus 605 ~~s 607 (859)
T KOG1241|consen 605 FES 607 (859)
T ss_pred HcC
Confidence 977
No 45
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=63.56 E-value=22 Score=35.21 Aligned_cols=96 Identities=16% Similarity=0.176 Sum_probs=57.1
Q ss_pred CchhHHHHHHHHHHHhhCCCCCCCchH-HHHHHHhcccCCccchHHHHHHHHhhccCCC-Cchhhhh--HHhHHHHHHHH
Q psy2712 83 GTAGERGLKLLVMLSYVYPCHFMQQSS-IQALLKMLTIEDEIVAPLVFSVLSFLGKYRP-LGEVFKE--EMKQLVPICQD 158 (602)
Q Consensus 83 ~~~~~~a~eLL~~IS~~~P~lFk~~e~-~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~-~~~~~p~--~~~~l~~~Lk~ 158 (602)
.-..+.|.+.|..|-..+| +.+ .. ...+.......++.+-..+++.+..+....+ -...+.. ..+.+.+.+.+
T Consensus 108 ~~i~~~a~~~L~~i~~~~~--~~~-~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~ 184 (228)
T PF12348_consen 108 KFIREAANNALDAIIESCS--YSP-KILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVK 184 (228)
T ss_dssp HHHHHHHHHHHHHHHTTS---H---HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCC--cHH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHH
Confidence 3467789999999999888 333 13 4556666667788787778888887752222 0111211 12458888888
Q ss_pred HHhcCCH---HHHHHHHHHHHHhcCC
Q psy2712 159 MIEKGTP---KQAKQAIRCLYKNLGD 181 (602)
Q Consensus 159 ~al~GtP---~qAK~Avr~L~a~~~~ 181 (602)
....++| .+||.+...++...+.
T Consensus 185 ~l~D~~~~VR~~Ar~~~~~l~~~~~~ 210 (228)
T PF12348_consen 185 LLSDADPEVREAARECLWALYSHFPE 210 (228)
T ss_dssp HHTSS-HHHHHHHHHHHHHHHHHH-H
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCH
Confidence 8888887 5777777777555554
No 46
>PRK09687 putative lyase; Provisional
Probab=62.11 E-value=96 Score=32.56 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=8.9
Q ss_pred CchHHHHHHHhcccCCcc
Q psy2712 106 QQSSIQALLKMLTIEDEI 123 (602)
Q Consensus 106 ~~e~~~~L~~ll~~~d~~ 123 (602)
+++.++.|+.++.++++.
T Consensus 157 ~~~ai~~L~~~L~d~~~~ 174 (280)
T PRK09687 157 DEAAIPLLINLLKDPNGD 174 (280)
T ss_pred CHHHHHHHHHHhcCCCHH
Confidence 344555555555544443
No 47
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=59.42 E-value=4.1e+02 Score=32.57 Aligned_cols=70 Identities=13% Similarity=0.001 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchH
Q psy2712 333 WMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEK 412 (602)
Q Consensus 333 rLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~ 412 (602)
.+|..|+.+|=++.. ++....|..+++|+...||+.=+.-|-+. . .+..-...+--+..|++.
T Consensus 822 ~VR~~Aa~aL~~l~~---------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~----~----~~~~a~~~L~~al~D~d~ 884 (897)
T PRK13800 822 QVRQGAARALAGAAA---------DVAVPALVEALTDPHLDVRKAAVLALTRW----P----GDPAARDALTTALTDSDA 884 (897)
T ss_pred HHHHHHHHHHHhccc---------cchHHHHHHHhcCCCHHHHHHHHHHHhcc----C----CCHHHHHHHHHHHhCCCH
Confidence 467777777655432 22334556666777777777766666442 1 333444344334456666
Q ss_pred HhHHHHH
Q psy2712 413 KLKMSTE 419 (602)
Q Consensus 413 elk~~v~ 419 (602)
++|....
T Consensus 885 ~Vr~~A~ 891 (897)
T PRK13800 885 DVRAYAR 891 (897)
T ss_pred HHHHHHH
Confidence 6665533
No 48
>KOG0166|consensus
Probab=53.85 E-value=2.4e+02 Score=32.56 Aligned_cols=266 Identities=13% Similarity=0.120 Sum_probs=143.9
Q ss_pred CcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHh---hCCCCCCCchHHHHHHHhcccCCccchHHHHHHH
Q psy2712 56 NAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSY---VYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVL 132 (602)
Q Consensus 56 ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~---~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~L 132 (602)
-.||.|++.+... . ++.--.++| --|..|+. ....++-....+..++.++...++.|.|-+.-+|
T Consensus 109 G~v~~lV~~l~~~----~-------~~~lq~eAA-WaLTnIAsgtse~T~~vv~agavp~fi~Ll~s~~~~v~eQavWAL 176 (514)
T KOG0166|consen 109 GVVPRLVEFLSRD----D-------NPTLQFEAA-WALTNIASGTSEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWAL 176 (514)
T ss_pred CcHHHHHHHHccC----C-------ChhHHHHHH-HHHHHHhcCchhhccccccCCchHHHHHHhcCCcHHHHHHHHHHH
Confidence 6777777777421 1 133334444 44455666 4455555566888899999888888999889999
Q ss_pred HhhccCCCCchhhhhHHhHHHHHHHHHHhcCCH-HHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhh
Q psy2712 133 SFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTP-KQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKM 211 (602)
Q Consensus 133 a~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP-~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~ 211 (602)
.+++...+.-.++- +.....+.|-.+-....+ ..=+.|+-+|.-++-.+. |..+ ......++..|..
T Consensus 177 gNIagds~~~Rd~v-l~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~----------P~P~-~~~v~~iLp~L~~ 244 (514)
T KOG0166|consen 177 GNIAGDSPDCRDYV-LSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN----------PSPP-FDVVAPILPALLR 244 (514)
T ss_pred hccccCChHHHHHH-HhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC----------CCCc-HHHHHHHHHHHHH
Confidence 98874321111111 122234444444444544 444556666644444432 1122 3566778888877
Q ss_pred cCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHH
Q psy2712 212 NLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMA 290 (602)
Q Consensus 212 ~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lv 290 (602)
-+...++. +.-+.-+|+.+.-..++...-.++.=+...+|+ +|...... ...-|||.+.
T Consensus 245 ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~-lL~~~~~~-------------------v~~PaLRaiG 304 (514)
T KOG0166|consen 245 LLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVD-LLGHSSPK-------------------VVTPALRAIG 304 (514)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHH-HHcCCCcc-------------------cccHHHhhcc
Confidence 77665554 444688888888877777665554435666654 44443221 1255888888
Q ss_pred HHhhcccchh---hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccC--cCCcCCHHHHHHHHH
Q psy2712 291 RWLLGLKAHK---ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKG--VGDQYSPEQFYNLSR 365 (602)
Q Consensus 291 n~Ll~~~~~~---~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~--~~~~I~~~~f~~La~ 365 (602)
|...|.. .+ -.-...+.-|..++ ...++.++|-.|+..+--++.-.. .+..|....+..|..
T Consensus 305 NIvtG~d-~QTq~vi~~~~L~~l~~ll------------~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~ 371 (514)
T KOG0166|consen 305 NIVTGSD-EQTQVVINSGALPVLSNLL------------SSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLIN 371 (514)
T ss_pred ceeeccH-HHHHHHHhcChHHHHHHHh------------ccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHH
Confidence 8433321 11 12233333444444 223445566667766666655211 223333344444555
Q ss_pred HHhcCchHHHHHH
Q psy2712 366 LLIDEVPEVREIF 378 (602)
Q Consensus 366 lvqD~~~~VR~~F 378 (602)
+++...+..|+.=
T Consensus 372 ~l~~~ef~~rKEA 384 (514)
T KOG0166|consen 372 LLQTAEFDIRKEA 384 (514)
T ss_pred HHhccchHHHHHH
Confidence 5555445444443
No 49
>KOG1059|consensus
Probab=53.51 E-value=4.8e+02 Score=31.53 Aligned_cols=217 Identities=12% Similarity=0.173 Sum_probs=120.9
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcc--cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLT--IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~--~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
.-..+|..+...+|..+|.-|-. ....+-+++. .++=.++- .+|.++++..+ -|+..+++++.|.++..
T Consensus 196 ~V~SAAV~VICELArKnPknyL~--LAP~ffkllttSsNNWmLIK-iiKLF~aLtpl------EPRLgKKLieplt~li~ 266 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQNYLQ--LAPLFYKLLVTSSNNWVLIK-LLKLFAALTPL------EPRLGKKLIEPITELME 266 (877)
T ss_pred hHHHHHHHHHHHHHhhCCccccc--ccHHHHHHHhccCCCeehHH-HHHHHhhcccc------CchhhhhhhhHHHHHHH
Confidence 36677999999999999999999 7777777775 23344444 88888877733 56677788888888765
Q ss_pred cCCHHHHH-HHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcch-HHHHHHHHHHhCCCCch
Q psy2712 162 KGTPKQAK-QAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRT-AIIALGHIAYNMPNKFP 239 (602)
Q Consensus 162 ~GtP~qAK-~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t-~L~sLg~Ia~~aP~~fe 239 (602)
.-....-= --|+++.+..-.. |-.+ +.....--+++|.-=++..++++-= .|-+++-|++.+|....
T Consensus 267 sT~AmSLlYECvNTVVa~s~s~--------g~~d---~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vq 335 (877)
T KOG1059|consen 267 STVAMSLLYECVNTVVAVSMSS--------GMSD---HSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQ 335 (877)
T ss_pred hhHHHHHHHHHHHHheeehhcc--------CCCC---cHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHH
Confidence 43322111 1233332210000 1000 0011111123332223445555332 35678889999998877
Q ss_pred hhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCc
Q psy2712 240 AVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGD 319 (602)
Q Consensus 240 ~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Ge 319 (602)
.|- ++|.+-+ ++ -+ .-.|+-||-++ -|+.+.+...+-|=+|+..++..+|
T Consensus 336 a~k-dlIlrcL-----------~D-----------kD--~SIRlrALdLl----~gmVskkNl~eIVk~LM~~~~~ae~- 385 (877)
T KOG1059|consen 336 AHK-DLILRCL-----------DD-----------KD--ESIRLRALDLL----YGMVSKKNLMEIVKTLMKHVEKAEG- 385 (877)
T ss_pred HhH-HHHHHHh-----------cc-----------CC--chhHHHHHHHH----HHHhhhhhHHHHHHHHHHHHHhccc-
Confidence 776 5443322 00 01 12355566542 2333333233444455667777777
Q ss_pred ccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHH
Q psy2712 320 LLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYN 362 (602)
Q Consensus 320 l~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~ 362 (602)
++-|---...++-+|....|.-...-++|..
T Consensus 386 ------------t~yrdell~~II~iCS~snY~~ItdFEWYls 416 (877)
T KOG1059|consen 386 ------------TNYRDELLTRIISICSQSNYQYITDFEWYLS 416 (877)
T ss_pred ------------hhHHHHHHHHHHHHhhhhhhhhhhhHHHHHH
Confidence 2455555667888888888876655555543
No 50
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=52.75 E-value=29 Score=41.32 Aligned_cols=263 Identities=14% Similarity=0.149 Sum_probs=131.3
Q ss_pred HHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHH
Q psy2712 89 GLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPK 166 (602)
Q Consensus 89 a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~ 166 (602)
+..+|-.+|.....-.+. ...+.-|++++..++..+.-.++..|.+++-++....... ...++++|.++...+++.
T Consensus 269 ~~~lLlNLAed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~--~~giV~kL~kLl~s~~~~ 346 (708)
T PF05804_consen 269 AFYLLLNLAEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMA--ESGIVEKLLKLLPSENED 346 (708)
T ss_pred HHHHHHHHhcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HcCCHHHHHHHhcCCCHH
Confidence 334455555443333322 4477788888876555444445566666664322222232 345899999999999998
Q ss_pred HHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCC--CCchhhHHH
Q psy2712 167 QAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMP--NKFPAVIKN 244 (602)
Q Consensus 167 qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP--~~fe~~~~~ 244 (602)
.-+-|.++|+-++-+.+-. ..+.-..++.+++.-|.. +.+....+..|.+|..-.. ..|... +
T Consensus 347 l~~~aLrlL~NLSfd~~~R------------~~mV~~GlIPkLv~LL~d-~~~~~val~iLy~LS~dd~~r~~f~~T--d 411 (708)
T PF05804_consen 347 LVNVALRLLFNLSFDPELR------------SQMVSLGLIPKLVELLKD-PNFREVALKILYNLSMDDEARSMFAYT--D 411 (708)
T ss_pred HHHHHHHHHHHhCcCHHHH------------HHHHHCCCcHHHHHHhCC-CchHHHHHHHHHHhccCHhhHHHHhhc--c
Confidence 8899999998777665311 122223455566555542 2232335566666655322 233222 2
Q ss_pred HHHHHHHHHHhccCCccccccC------CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcC
Q psy2712 245 TVSRKIVKELLIKETEESYQYK------KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKG 318 (602)
Q Consensus 245 iI~~fIvk~lLl~~~~~~~~~~------~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~G 318 (602)
....|++-++..+.+..+.+- -.+... .-...++--+|+.|+.+....++ .-++|++..+=.++|
T Consensus 412 -cIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r---naqlm~~g~gL~~L~~ra~~~~D-----~lLlKlIRNiS~h~~ 482 (708)
T PF05804_consen 412 -CIPQLMQMLLENSEEEVQLELIALLINLALNKR---NAQLMCEGNGLQSLMKRALKTRD-----PLLLKLIRNISQHDG 482 (708)
T ss_pred -hHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH---HHHHHHhcCcHHHHHHHHHhccc-----HHHHHHHHHHHhcCc
Confidence 356777766554332221110 011000 00223444567777777654332 234677777766665
Q ss_pred cccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcC---chHH-HHHHHHHHHHhhccC
Q psy2712 319 DLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDE---VPEV-REIFANKLHKGLGRN 389 (602)
Q Consensus 319 el~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~---~~~V-R~~Fl~KL~k~L~~~ 389 (602)
.... ..-.++. -+++++..+. ++-+..+-.-.|+++...+ ..-+ +..|+..|++.|..+
T Consensus 483 ~~k~------~f~~~i~-----~L~~~v~~~~-~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g 545 (708)
T PF05804_consen 483 PLKE------LFVDFIG-----DLAKIVSSGD-SEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPG 545 (708)
T ss_pred hHHH------HHHHHHH-----HHHHHhhcCC-cHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCC
Confidence 4211 1111222 2333333322 2233333344455443221 1122 236888888888644
No 51
>KOG1061|consensus
Probab=49.17 E-value=2.1e+02 Score=34.33 Aligned_cols=75 Identities=17% Similarity=0.192 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCC---CchhhhhHHhHHHHHHHHHHh
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRP---LGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~---~~~~~p~~~~~l~~~Lk~~al 161 (602)
..+.-...-+=...|.++..+..++.|.+++.+++|.|+-.++.+|+.+..-.+ .....+.....+.++|.+.-.
T Consensus 139 ktaa~~vakl~~~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~~~~~lL~al~ec~E 216 (734)
T KOG1061|consen 139 KTAAVCVAKLFDIDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQLINKLLEALNECTE 216 (734)
T ss_pred HHHHHHHHHhhcCChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHHHHHHHHHHHHHhhh
Confidence 334444455667789999999999999999998899999999999998863322 122233344456666644433
No 52
>KOG0220|consensus
Probab=48.48 E-value=2.5e+02 Score=33.70 Aligned_cols=186 Identities=15% Similarity=0.220 Sum_probs=103.5
Q ss_pred HHHHHHhhccCCCCc-hhhhhHHhHHHHHH-H--HHHhcCC--HHHHHHHHHHHHHhcCCCccccccccc-ccCccchhh
Q psy2712 128 VFSVLSFLGKYRPLG-EVFKEEMKQLVPIC-Q--DMIEKGT--PKQAKQAIRCLYKNLGDSYTIEVMDEN-SENGVRTVD 200 (602)
Q Consensus 128 ~Lk~La~~~k~k~~~-~~~p~~~~~l~~~L-k--~~al~Gt--P~qAK~Avr~L~a~~~~~~~~~~~~~~-~~~~~~~~~ 200 (602)
.++|+|++|-|-|.. .++| ..+++..++ . ++-...+ ..+-|-|+-++ -...+..-..-|-+| +|...-+.-
T Consensus 643 l~~IMAQIGc~IPA~YaS~p-If~RIFtRmg~nDele~NsS~F~sEMke~A~Il-q~a~~~SLiVlDELgR~TSteeGia 720 (867)
T KOG0220|consen 643 LCQIMAQIGSYVPAEYASFR-VFKRIFTRMGTNDELERNSSTFMSEMKEAAYIL-QNANKNSLIVLDELGRGTSTEEGIA 720 (867)
T ss_pred HHHHHHHhccCcchhhccch-HHHHHHHHhcCchhhhhchhHHHHHHHHHHHHH-HhCCcCcEEEEhhhccCCccccchh
Confidence 478899999663321 2355 333333222 1 0111111 14666676666 444433222334445 444443333
Q ss_pred HHHHHHHHHhhcCCCCC-CCcchHHHHHHHHHHhCCCC----chhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCC
Q psy2712 201 LFVDILDKVKMNLTPDS-PNYRTAIIALGHIAYNMPNK----FPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDL 275 (602)
Q Consensus 201 ~~~~Iie~l~~~L~~~s-~~l~t~L~sLg~Ia~~aP~~----fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l 275 (602)
+.=.+.|.+ . ..++ .-|.||+..|+.||-+.|.+ |..+..+= ...-.|..|.+....++..+-+-++-..+
T Consensus 721 ityAvCE~l-L--~LkayTflATHFldIa~lan~~paVdnlHF~~q~~eN-ssk~~k~kLsrg~~~~~~yG~~~vE~s~i 796 (867)
T KOG0220|consen 721 ITYAVCEYL-L--SLKAYTFLATHFLDIAAIANYYPAVDNLHFLVQTDEN-SSKNKKYKLSRGLTEEKNYGLKAAEVSSL 796 (867)
T ss_pred hHHHHHHHH-H--HhhHhHHHHHHHHHHHHHhhcCccccceeeeeeeccc-chhhhhhhhhhhhhhcccccceEEEEecC
Confidence 444566666 2 3333 36899999999999999986 55444331 22223456666665555555455555666
Q ss_pred CHH--HHHHHHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHhhcCc
Q psy2712 276 PNE--VRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNAVIVNKGD 319 (602)
Q Consensus 276 ~~e--~~aKi~aLK~lvn~Ll~~~~~~--~~a~~v~kLL~~lL~~~Ge 319 (602)
|++ +.+|-++..+++|..---.+.+ ..-.+|.-+-..|...-|+
T Consensus 797 Pd~i~e~a~~~~t~i~A~v~~~~rd~~~~~rq~~Vy~~a~~~~~t~gn 844 (867)
T KOG0220|consen 797 PDSIVEDAKEITTQITAQILQNQRDTPEMERQRAVYHLATRLVQTAGN 844 (867)
T ss_pred CHHHHHhhhHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHhhCC
Confidence 664 4688999999998876655533 3344555555556666777
No 53
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=46.36 E-value=78 Score=29.97 Aligned_cols=69 Identities=14% Similarity=0.106 Sum_probs=49.1
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc-CCccchHHHH
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI-EDEIVAPLVF 129 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~-~d~~v~e~~L 129 (602)
+.++..|-++++.. +....-.|+.||..+.+.|...|.. .+.+++|+.++.. .++.|.+.+|
T Consensus 40 k~a~ral~krl~~~-------------n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil 106 (142)
T cd03569 40 KYAMRALKKRLLSK-------------NPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKIL 106 (142)
T ss_pred HHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHH
Confidence 46666777666532 3346678999999999999998877 6777888888763 3456666666
Q ss_pred HHHHhhc
Q psy2712 130 SVLSFLG 136 (602)
Q Consensus 130 k~La~~~ 136 (602)
..+..-+
T Consensus 107 ~li~~W~ 113 (142)
T cd03569 107 ELIQAWA 113 (142)
T ss_pred HHHHHHH
Confidence 6666444
No 54
>KOG0168|consensus
Probab=46.07 E-value=1.4e+02 Score=36.30 Aligned_cols=220 Identities=16% Similarity=0.201 Sum_probs=127.4
Q ss_pred HHHHHhhhhc--cccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHH
Q psy2712 15 VTAIVTTARR--DFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKL 92 (602)
Q Consensus 15 ~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eL 92 (602)
|-.+++..+- .|+|...-=+-+.|+.|= --+++-+.++--.||+|++.+..- + =-...|-+++-
T Consensus 213 vp~Lv~LL~~E~n~DIMl~AcRaltyl~ev--lP~S~a~vV~~~aIPvl~~kL~~I-------e-----yiDvAEQ~LqA 278 (1051)
T KOG0168|consen 213 VPVLVALLSHEHNFDIMLLACRALTYLCEV--LPRSSAIVVDEHAIPVLLEKLLTI-------E-----YIDVAEQSLQA 278 (1051)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHhh--ccchhheeecccchHHHHHhhhhh-------h-----hhHHHHHHHHH
Confidence 3344444432 233333333445555443 234556677778999999998631 0 11256778999
Q ss_pred HHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHH
Q psy2712 93 LVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAI 172 (602)
Q Consensus 93 L~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Av 172 (602)
|++||..+|.---....+-..+..+..=...+-..+|.|.++++ +.++.+-+...-+-.|.|..+-.+-+.+--.++.
T Consensus 279 LE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~C--ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ 356 (1051)
T KOG0168|consen 279 LEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCC--KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVC 356 (1051)
T ss_pred HHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH--hcCCCccchHHHHHHHHHHHHHhhccchhHHHHH
Confidence 99999999964322112222222222101124456889999998 4555433323335678888888888877666777
Q ss_pred HHHHHhcCCCcccccccccccCccchhhHHH-HHHHHHhhcCCCCC-----CCcchHHHHHHHHHHhCCCCchhhHHHHH
Q psy2712 173 RCLYKNLGDSYTIEVMDENSENGVRTVDLFV-DILDKVKMNLTPDS-----PNYRTAIIALGHIAYNMPNKFPAVIKNTV 246 (602)
Q Consensus 173 r~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iie~l~~~L~~~s-----~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI 246 (602)
-|++.+...-. ..+.+++++|+ ++++.+..-|.... +-|.-.+-.|+-++--+|..|..-.+.=|
T Consensus 357 ic~~ri~d~f~---------h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~k~~I 427 (1051)
T KOG0168|consen 357 ICLTRIADGFQ---------HGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLLKLDI 427 (1051)
T ss_pred HHHHHHHHhcc---------cChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHHHhhH
Confidence 77755443321 22333444443 67777755444332 23555666667677777888988887644
Q ss_pred HHHHHHHHhccCCc
Q psy2712 247 SRKIVKELLIKETE 260 (602)
Q Consensus 247 ~~fIvk~lLl~~~~ 260 (602)
..++|++|.....
T Consensus 428 -~~~L~~il~g~s~ 440 (1051)
T KOG0168|consen 428 -ADTLKRILQGYSK 440 (1051)
T ss_pred -HHHHHHHHhccCc
Confidence 4456888866543
No 55
>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4
Probab=43.66 E-value=5.2e+02 Score=31.63 Aligned_cols=145 Identities=14% Similarity=0.150 Sum_probs=65.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcC-CCCCCC---cchHHHH
Q psy2712 151 QLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNL-TPDSPN---YRTAIIA 226 (602)
Q Consensus 151 ~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L-~~~s~~---l~t~L~s 226 (602)
.|.+++..-...-+|...+.-+|+|-.++-+.... +..+-+-++..+ ++ .++..+ -.-.|-.
T Consensus 229 ~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~-------------m~~Lv~~F~p~l-~f~~~D~~~~~~~~~~Le~ 294 (802)
T PF13764_consen 229 MLLERLNSPFVRSNPQILQALARILPFLTYGNEEK-------------MDALVEHFKPYL-DFDKFDEEHSPDEQFKLEC 294 (802)
T ss_pred HHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHH-------------HHHHHHHHHHhc-ChhhcccccCchHHHHHHH
Confidence 35555554444556777777777774333332211 222333333332 23 122222 1233556
Q ss_pred HHHHHHhCCCCc-hhhHHHHHHH-HHHHHH---hccCCcc-ccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh
Q psy2712 227 LGHIAYNMPNKF-PAVIKNTVSR-KIVKEL---LIKETEE-SYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK 300 (602)
Q Consensus 227 Lg~Ia~~aP~~f-e~~~~~iI~~-fIvk~l---Ll~~~~~-~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~ 300 (602)
+.+|+..-|.-+ ....++.|.. -|++.. |++.-+. ...+.++|.+--..| . =-++|++|.=.+.++...+
T Consensus 295 F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p--s--Lp~iL~lL~GLa~gh~~tQ 370 (802)
T PF13764_consen 295 FCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP--S--LPYILRLLRGLARGHEPTQ 370 (802)
T ss_pred HHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC--c--HHHHHHHHHHHHhcCHHHH
Confidence 666666555443 4455544332 122222 2232222 222336786541111 0 0234555555555544444
Q ss_pred -hhHHHHHHHHHHH
Q psy2712 301 -ESAQKTFRMLNAV 313 (602)
Q Consensus 301 -~~a~~v~kLL~~l 313 (602)
..++.++++|..|
T Consensus 371 ~~~~~~~l~~lH~L 384 (802)
T PF13764_consen 371 LLIAEQLLPLLHRL 384 (802)
T ss_pred HHHHhhHHHHHHHh
Confidence 4567777777766
No 56
>KOG3685|consensus
Probab=43.50 E-value=1.1e+02 Score=36.96 Aligned_cols=115 Identities=17% Similarity=0.165 Sum_probs=75.7
Q ss_pred cCCcC--CHHHHHHHHHHHhcCchHHHHHHHHHHHHhh--ccCCCCCCCChhhHHHHhhccccchH--------HhHHHH
Q psy2712 351 VGDQY--SPEQFYNLSRLLIDEVPEVREIFANKLHKGL--GRNLPNKCLPLDFMGFYALGGLEEEK--------KLKMST 418 (602)
Q Consensus 351 ~~~~I--~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L--~~~~~~~~Lp~rf~~l~fL~A~EPd~--------elk~~v 418 (602)
|..+| .-..|+.+|.-.||-..----.|+..|..+| .+..|..++|++|+-.+++....-.. ..-+..
T Consensus 796 Fqt~i~~~~~f~rsiA~sL~DF~eLss~~~i~~l~E~L~~kkslP~~~~~i~~~enla~~~v~~p~d~~~~~Ws~~~~~~ 875 (1338)
T KOG3685|consen 796 FQTQIKIRHHFFRSIAKSLQDFQELSSTSPIYMLCESLTSKKSLPIEQLPIIFAENLALQCVPTPADVGLAVWSQAMQAM 875 (1338)
T ss_pred HhhcCCCCchHHHHHHHHHhhhhhccchHHHHHHHHhhcccccCCcccchhHHHHhhhheeeecccCCcccHHHHHHHHH
Confidence 44444 2346778888888865555556888899999 45567778999998777775443222 222224
Q ss_pred HHHHHcCCCCCc-----hhHHHHHhhhccCCCCCCCcccHHHHHHHHHHHHHHHH
Q psy2712 419 EKALAQLPNFLP-----DFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILE 468 (602)
Q Consensus 419 ~~~~~~~~~~~p-----Ey~L~rLIhLLAHHPDF~~~~d~~~L~~~~~yL~FyLe 468 (602)
++..++.+..+| ||+|--++++|- -|-+++.. ..++.|.+.+-|.++
T Consensus 876 etff~~~~~imP~~~~~e~~l~IM~~~lk-l~~~~~t~--sl~e~Fsk~ls~~vq 927 (1338)
T KOG3685|consen 876 ETFFRQVIVIMPSLTNAEYMLDIMAATLK-LNCVPKTL--SLPEAFSKILSYCVQ 927 (1338)
T ss_pred HHHHHhhhhhccccccHHHHHHHHHHHhc-ccccchhh--hhhHHHHHHHHHHHH
Confidence 555677777777 999999998884 45666542 345567776666554
No 57
>KOG4224|consensus
Probab=41.24 E-value=4.1e+02 Score=29.77 Aligned_cols=226 Identities=19% Similarity=0.189 Sum_probs=118.0
Q ss_pred CCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHH---HHHHHHHHHHHh
Q psy2712 102 CHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPK---QAKQAIRCLYKN 178 (602)
Q Consensus 102 ~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~---qAK~Avr~L~a~ 178 (602)
..+-+..-++-|+++++..|+.+-..+..+++.++--....+.......++++.|.++--.|+|+ ||-.|.+.|.+
T Consensus 202 r~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlas- 280 (550)
T KOG4224|consen 202 RVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLAS- 280 (550)
T ss_pred hhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcc-
Confidence 33333447888999999888888888888888876211101111111235889999999999996 67777776621
Q ss_pred cCCCcccccccccccCccchhhHHHHHHHHHhhcC---CCCCCCcchHHHHHHHHHHhCCCCchhhH-HHH-HHHHHHHH
Q psy2712 179 LGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNL---TPDSPNYRTAIIALGHIAYNMPNKFPAVI-KNT-VSRKIVKE 253 (602)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L---~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~-~~i-I~~fIvk~ 253 (602)
+ ..|..+|++.=.-|+ -..++..+-.+++.+||--.+-+-..+-. -+- .-+-+|.
T Consensus 281 --d-----------------t~Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVr- 340 (550)
T KOG4224|consen 281 --D-----------------TEYQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVR- 340 (550)
T ss_pred --c-----------------chhhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHH-
Confidence 1 133344444211111 01556778888999999544322211111 000 0011222
Q ss_pred HhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh------hhHHHHHHHHHHHHhhcCcccCCCCCC
Q psy2712 254 LLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK------ESAQKTFRMLNAVIVNKGDLLQSDKMS 327 (602)
Q Consensus 254 lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~------~~a~~v~kLL~~lL~~~Gel~~~~~t~ 327 (602)
+|.. ++ ...+|+.|.-++-|.--+...+. ..+++...|+. +| |
T Consensus 341 lL~~----~d--------------nEeiqchAvstLrnLAasse~n~~~i~esgAi~kl~eL~l-----D~--------p 389 (550)
T KOG4224|consen 341 LLRA----GD--------------NEEIQCHAVSTLRNLAASSEHNVSVIRESGAIPKLIELLL-----DG--------P 389 (550)
T ss_pred HHhc----CC--------------chhhhhhHHHHHHHHhhhhhhhhHHHhhcCchHHHHHHHh-----cC--------C
Confidence 2211 11 11357888888877644332222 12344443332 23 3
Q ss_pred HHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHH
Q psy2712 328 KQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKL 382 (602)
Q Consensus 328 ~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL 382 (602)
-..++ |.+|+.+.|-++...+- .+...-...-|.-+.-+++.+||--=..-|
T Consensus 390 vsvqs--eisac~a~Lal~d~~k~-~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL 441 (550)
T KOG4224|consen 390 VSVQS--EISACIAQLALNDNDKE-ALLDSGIIPILIPWTGSESEEVRGNAAAAL 441 (550)
T ss_pred hhHHH--HHHHHHHHHHhccccHH-HHhhcCCcceeecccCccchhhcccHHHHH
Confidence 34444 47899999988775321 111111111233345577777776554444
No 58
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=40.62 E-value=41 Score=31.96 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=49.3
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc-CCccchHHHH
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI-EDEIVAPLVF 129 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~-~d~~v~e~~L 129 (602)
+.++..|-+++... +.+..-.|+.||..+.+.|...|.. .+.+.+|+.++.. .++.|.+.+|
T Consensus 36 k~a~ral~KRl~~~-------------n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil 102 (144)
T cd03568 36 KDCLKAIMKRLNHK-------------DPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLR 102 (144)
T ss_pred HHHHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHH
Confidence 46666777666421 2346677999999999999999987 6778888888875 4566666666
Q ss_pred HHHHhhc
Q psy2712 130 SVLSFLG 136 (602)
Q Consensus 130 k~La~~~ 136 (602)
..+-.-+
T Consensus 103 ~li~~W~ 109 (144)
T cd03568 103 EVVKQWA 109 (144)
T ss_pred HHHHHHH
Confidence 6555443
No 59
>KOG1059|consensus
Probab=40.61 E-value=4e+02 Score=32.18 Aligned_cols=118 Identities=19% Similarity=0.145 Sum_probs=64.9
Q ss_pred CCcchhhHHHHHHHHHhhhhcccc-ccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhc--------CCCCc
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFD-IVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCL--------NHGNL 74 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~--------~g~~~ 74 (602)
-|||-+|---+|.-|-+.|||+-. .+...+.+++.+ -+.+.-|. ||+.++--- -|..-
T Consensus 191 eDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkll--ttSsNNWm-----------LIKiiKLF~aLtplEPRLgKKL 257 (877)
T KOG1059|consen 191 EDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLL--VTSSNNWV-----------LIKLLKLFAALTPLEPRLGKKL 257 (877)
T ss_pred cCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHH--hccCCCee-----------hHHHHHHHhhccccCchhhhhh
Confidence 589999999999999999999842 333347777766 33333332 222221000 00000
Q ss_pred ccccCCCCCchhHHHHHHHH---------HHHhhCCCCCCC-chHHHHHHHhcccCCccchHHHHHHHHhhc
Q psy2712 75 IDELGLHPGTAGERGLKLLV---------MLSYVYPCHFMQ-QSSIQALLKMLTIEDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 75 ~ee~~~~~~~~~~~a~eLL~---------~IS~~~P~lFk~-~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~ 136 (602)
.|- +..--....|+.||= .||.-.|.++++ +=+++.|..++.+.|+.+-=..|-++++++
T Consensus 258 iep--lt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ 327 (877)
T KOG1059|consen 258 IEP--ITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL 327 (877)
T ss_pred hhH--HHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence 000 001112223333332 133345666665 556677777777777777666777777777
No 60
>KOG1060|consensus
Probab=39.41 E-value=2.7e+02 Score=33.86 Aligned_cols=187 Identities=15% Similarity=0.134 Sum_probs=103.3
Q ss_pred hhHHHHHHHHHhhhhccc----------cccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCccccc
Q psy2712 9 NVRYEVVTAIVTTARRDF----------DIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDEL 78 (602)
Q Consensus 9 ~~r~~v~~~~~~~~~~~~----------~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~ 78 (602)
.|+.-|+..|-..++++= =+.++++...+.++=.+|. .+.|-++|+.++.-.+.-+...
T Consensus 336 ~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~vk~lKleiLs-----~La~esni~~ILrE~q~YI~s~------ 404 (968)
T KOG1060|consen 336 EVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQVKILKLEILS-----NLANESNISEILRELQTYIKSS------ 404 (968)
T ss_pred cchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHHHHHHHHHHH-----HHhhhccHHHHHHHHHHHHhcC------
Confidence 578888899988887763 3445555555555333333 4678999999888776543111
Q ss_pred CCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHH
Q psy2712 79 GLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQD 158 (602)
Q Consensus 79 ~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~ 158 (602)
..+....+.+=+-.-++..-++=.+ ++..|+.++...|+.|+..+.-.+-..- +.-|....+++..|.+
T Consensus 405 ---d~~faa~aV~AiGrCA~~~~sv~~t--CL~gLv~Llsshde~Vv~eaV~vIk~Ll------q~~p~~h~~ii~~La~ 473 (968)
T KOG1060|consen 405 ---DRSFAAAAVKAIGRCASRIGSVTDT--CLNGLVQLLSSHDELVVAEAVVVIKRLL------QKDPAEHLEILFQLAR 473 (968)
T ss_pred ---chhHHHHHHHHHHHHHHhhCchhhH--HHHHHHHHHhcccchhHHHHHHHHHHHH------hhChHHHHHHHHHHHH
Confidence 2245555666555555555555445 8888999998667665543433333332 1122223344555544
Q ss_pred HHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhC
Q psy2712 159 MIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNM 234 (602)
Q Consensus 159 ~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~a 234 (602)
+--.-.-.+|+.++- ++++.--.. .-.++.+++..+++.+. ++.-.++||.|--.|++.
T Consensus 474 lldti~vp~ARA~Ii---WLige~~e~------------vpri~PDVLR~laksFs--~E~~evKlQILnL~aKLy 532 (968)
T KOG1060|consen 474 LLDTILVPAARAGII---WLIGEYCEI------------VPRIAPDVLRKLAKSFS--DEGDEVKLQILNLSAKLY 532 (968)
T ss_pred Hhhhhhhhhhhceee---eeehhhhhh------------cchhchHHHHHHHHhhc--cccchhhHHHHHhhhhhe
Confidence 443333345554433 333321000 01345666676666553 455677777776666654
No 61
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=38.83 E-value=6.5e+02 Score=28.80 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=36.3
Q ss_pred HHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHH-HHhcCchHHHHHHHHHH
Q psy2712 305 KTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSR-LLIDEVPEVREIFANKL 382 (602)
Q Consensus 305 ~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~-lvqD~~~~VR~~Fl~KL 382 (602)
.+-..|..+..+.++ -+.+|.+|...+++.- | +...+..++. +-.|++.||+.-....|
T Consensus 514 ~v~~~l~~i~~n~~e-----------~~EvRiaA~~~lm~t~--P------~~~~l~~ia~~l~~E~~~QV~sfv~S~l 573 (574)
T smart00638 514 KVQEVLLPIYLNRAE-----------PPEVRMAAVLVLMETK--P------SVALLQRIAELLNKEPNLQVASFVYSHI 573 (574)
T ss_pred HHHHHHHHHHcCCCC-----------ChHHHHHHHHHHHhcC--C------CHHHHHHHHHHHhhcCcHHHHHHhHHhh
Confidence 444445666645443 1348888888877651 2 2346666664 55678889987766554
No 62
>KOG0946|consensus
Probab=37.09 E-value=4.3e+02 Score=32.28 Aligned_cols=306 Identities=14% Similarity=0.118 Sum_probs=0.0
Q ss_pred CcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcc--cCCccchHHHHHHHH
Q psy2712 56 NAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLT--IEDEIVAPLVFSVLS 133 (602)
Q Consensus 56 ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~--~~d~~v~e~~Lk~La 133 (602)
+.|+.|.++|..| ..-+-...|..=|+-+|+-|-..-.. .-.+-|+..+. ..|+.++-.+|-+++
T Consensus 22 ETI~kLcDRvess------------TL~eDRR~A~rgLKa~srkYR~~Vga-~Gmk~li~vL~~D~~D~E~ik~~LdTl~ 88 (970)
T KOG0946|consen 22 ETIEKLCDRVESS------------TLLEDRRDAVRGLKAFSRKYREEVGA-QGMKPLIQVLQRDYMDPEIIKYALDTLL 88 (970)
T ss_pred hHHHHHHHHHhhc------------cchhhHHHHHHHHHHHHHHHHHHHHH-cccHHHHHHHhhccCCHHHHHHHHHHHH
Q ss_pred hhccCCCCc-----------------hhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCcc
Q psy2712 134 FLGKYRPLG-----------------EVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGV 196 (602)
Q Consensus 134 ~~~k~k~~~-----------------~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~ 196 (602)
.+-.+...| +.+- ....++..|..+-.+-+=.-=.|||.+|.++..... +--+
T Consensus 89 il~~~dd~~~v~dds~qsdd~g~~iae~fi-k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~---------~e~q 158 (970)
T KOG0946|consen 89 ILTSHDDSPEVMDDSTQSDDLGLWIAEQFI-KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRP---------TELQ 158 (970)
T ss_pred HHHhcCcchhhcccchhhhHHHHHHHHHHH-cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCC---------HHHH
Q ss_pred chhhHHHHHHHHHhhcCCCCCCCcch-HHHHHHHHHHhCCCC-----chhhHHHHHHHHHHHHHhccCCccccccCCCCc
Q psy2712 197 RTVDLFVDILDKVKMNLTPDSPNYRT-AIIALGHIAYNMPNK-----FPAVIKNTVSRKIVKELLIKETEESYQYKKDWV 270 (602)
Q Consensus 197 ~~~~~~~~Iie~l~~~L~~~s~~l~t-~L~sLg~Ia~~aP~~-----fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~ 270 (602)
.+...+..=+.++++.|....+-... .|--|.++.+-.|.+ |+.-.+. +-+-| ...|--++.--+
T Consensus 159 ~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFer-LfsII--------eeEGg~dGgIVv 229 (970)
T KOG0946|consen 159 DALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFER-LFSII--------EEEGGLDGGIVV 229 (970)
T ss_pred HHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHH-HHHHH--------HhcCCCCCcchH
Q ss_pred cCCCCCHHHHHHHHHHHHHHHHhhcccchh------hhHHHHHHHHHHHHhhcCccc-----------------------
Q psy2712 271 FEEDLPNEVRCKMEGMKMMARWLLGLKAHK------ESAQKTFRMLNAVIVNKGDLL----------------------- 321 (602)
Q Consensus 271 ~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~------~~a~~v~kLL~~lL~~~Gel~----------------------- 321 (602)
+| ||++|-|.|+...+++ ..+++..+||..++-.+||.+
T Consensus 230 eD------------CL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP 297 (970)
T KOG0946|consen 230 ED------------CLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSP 297 (970)
T ss_pred HH------------HHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCC
Q ss_pred --CCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHh--------------cCchHHHHHHHHHHHHh
Q psy2712 322 --QSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLI--------------DEVPEVREIFANKLHKG 385 (602)
Q Consensus 322 --~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvq--------------D~~~~VR~~Fl~KL~k~ 385 (602)
....+....++---..--..+..+.-.+..-.-|-++.++.+|.++. +..++-|-..+-=+..+
T Consensus 298 ~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn~~nQ~~F~~v~~p~~~~Pr~sivvllmsm 377 (970)
T KOG0946|consen 298 GNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILTESIITVAEVVRGNARNQDEFADVTAPSIPNPRPSIVVLLMSM 377 (970)
T ss_pred CCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhchHHHHHHhhccCCCCCCCccchhHHHHHH
Q ss_pred hccCCCCCCCChhhHHHHhhccc
Q psy2712 386 LGRNLPNKCLPLDFMGFYALGGL 408 (602)
Q Consensus 386 L~~~~~~~~Lp~rf~~l~fL~A~ 408 (602)
.....| ...|++++++|-++
T Consensus 378 ~ne~q~---~~lRcAv~ycf~s~ 397 (970)
T KOG0946|consen 378 FNEKQP---FSLRCAVLYCFRSY 397 (970)
T ss_pred HhccCC---chHHHHHHHHHHHH
No 63
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=37.00 E-value=36 Score=37.35 Aligned_cols=92 Identities=17% Similarity=0.231 Sum_probs=70.1
Q ss_pred cchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHH
Q psy2712 31 SSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSI 110 (602)
Q Consensus 31 ~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~ 110 (602)
.++|-|+||| +.++.+..|-.+..+-|..|+..++.. .+.....|.+.|.+++-.+|++...-.-+
T Consensus 84 ER~QALkliR-~~l~~~~~~~~~~~~vvralvaiae~~-------------~D~lr~~cletL~El~l~~P~lv~~~gG~ 149 (371)
T PF14664_consen 84 EREQALKLIR-AFLEIKKGPKEIPRGVVRALVAIAEHE-------------DDRLRRICLETLCELALLNPELVAECGGI 149 (371)
T ss_pred HHHHHHHHHH-HHHHhcCCcccCCHHHHHHHHHHHhCC-------------chHHHHHHHHHHHHHHhhCHHHHHHcCCH
Confidence 4779999994 356666677778888888888877642 45688999999999999999998654467
Q ss_pred HHHHHhcccCCccchHHHHHHHHhhc
Q psy2712 111 QALLKMLTIEDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 111 ~~L~~ll~~~d~~v~e~~Lk~La~~~ 136 (602)
+.|++.+.+....+++.++.++-+.-
T Consensus 150 ~~L~~~l~d~~~~~~~~l~~~lL~lL 175 (371)
T PF14664_consen 150 RVLLRALIDGSFSISESLLDTLLYLL 175 (371)
T ss_pred HHHHHHHHhccHhHHHHHHHHHHHHh
Confidence 88888777644347777777777664
No 64
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=33.97 E-value=52 Score=30.53 Aligned_cols=54 Identities=17% Similarity=0.094 Sum_probs=38.7
Q ss_pred CchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhcccC---CccchHHHHHHHHhhc
Q psy2712 83 GTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTIE---DEIVAPLVFSVLSFLG 136 (602)
Q Consensus 83 ~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~~---d~~v~e~~Lk~La~~~ 136 (602)
....-.|+.||..+++.+...|.. .+.+.+|++++... ++.|...+|..+..-+
T Consensus 51 ~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~ 111 (133)
T cd03561 51 PHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWS 111 (133)
T ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHH
Confidence 356678999999999999998876 35666788887642 4456665666655444
No 65
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=31.91 E-value=3.2e+02 Score=32.21 Aligned_cols=133 Identities=14% Similarity=0.104 Sum_probs=75.4
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCC-ccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIED-EIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d-~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
..-.+.+-+.-+|-.||.--.+ .+.-|.+.+..+. -.-...+..+++.+.+| .|..... .|+.+|..=
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s--~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~------~p~skEr---aLe~LC~fI 459 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLS--YLDFLGSSLLQEGGLEFKKYMVDAISDAMEN------DPDSKER---ALEVLCTFI 459 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHH--HHHHHHHHHHhcccchHHHHHHHHHHHHHhh------CchHHHH---HHHHHHHHH
Confidence 3334555566667777766666 6666666665321 11112233344444433 3322222 344555443
Q ss_pred C-HHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcc-hHHHHHHHHHHhCCCCchhh
Q psy2712 164 T-PKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYR-TAIIALGHIAYNMPNKFPAV 241 (602)
Q Consensus 164 t-P~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~-t~L~sLg~Ia~~aP~~fe~~ 241 (602)
. ..--+-++|+| .+.+.. |+.+++|. .+..-|...++. + ..+.. +++++|+.+|+..-+.|..+
T Consensus 460 EDcey~~I~vrIL-~iLG~E--------gP~a~~P~-~yvrhIyNR~iL--E--N~ivRsaAv~aLskf~ln~~d~~~~~ 525 (898)
T COG5240 460 EDCEYHQITVRIL-GILGRE--------GPRAKTPG-KYVRHIYNRLIL--E--NNIVRSAAVQALSKFALNISDVVSPQ 525 (898)
T ss_pred hhcchhHHHHHHH-HHhccc--------CCCCCCcc-hHHHHHHHHHHH--h--hhHHHHHHHHHHHHhccCccccccHH
Confidence 2 23445789999 666653 55666665 566777777632 2 22333 46899999999988888777
Q ss_pred H
Q psy2712 242 I 242 (602)
Q Consensus 242 ~ 242 (602)
+
T Consensus 526 s 526 (898)
T COG5240 526 S 526 (898)
T ss_pred H
Confidence 6
No 66
>PF07571 DUF1546: Protein of unknown function (DUF1546); InterPro: IPR011442 These proteins are associated with IPR004823 from INTERPRO in transcription initiation factor TFIID subunit 6 (TAF6).; GO: 0051090 regulation of sequence-specific DNA binding transcription factor activity, 0005634 nucleus
Probab=30.20 E-value=93 Score=27.25 Aligned_cols=64 Identities=22% Similarity=0.273 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccc
Q psy2712 329 QEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGL 408 (602)
Q Consensus 329 ~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~ 408 (602)
.+-=.||=.||.-|=.+|+ .|... .+.+|.+..+.|.+.+.. |.+.++..|-++..|.+.
T Consensus 17 ~~h~~LRd~AA~lL~~I~~--~~~~~----------------~~~L~~Ri~~tl~k~l~d--~~~~~~t~YGAi~gL~~l 76 (92)
T PF07571_consen 17 DNHWALRDFAASLLAQICR--KFSSS----------------YPTLQPRITRTLLKALLD--PKKPLGTHYGAIVGLSAL 76 (92)
T ss_pred cchHHHHHHHHHHHHHHHH--Hhccc----------------cchHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHH
Confidence 4456799999999999987 36543 345666777778888876 456689999999999988
Q ss_pred cchH
Q psy2712 409 EEEK 412 (602)
Q Consensus 409 EPd~ 412 (602)
.|+.
T Consensus 77 G~~~ 80 (92)
T PF07571_consen 77 GPEA 80 (92)
T ss_pred HHHH
Confidence 7753
No 67
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=29.65 E-value=49 Score=25.31 Aligned_cols=50 Identities=30% Similarity=0.277 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhhhhcccC-cCCcCCHHHHHHHHHHHhcCchHHHHHHHHHH
Q psy2712 333 WMRLSAGCAMLKICEQKG-VGDQYSPEQFYNLSRLLIDEVPEVREIFANKL 382 (602)
Q Consensus 333 rLRL~Aa~~lLKLA~~~~-~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL 382 (602)
+.|-.|+.++=.++.... ....+.++.+..|..+++|++..||..-..-|
T Consensus 2 ~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aL 52 (55)
T PF13513_consen 2 RVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWAL 52 (55)
T ss_dssp HHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 578888888877775322 22334455667777888999999998876544
No 68
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=29.27 E-value=2e+02 Score=25.50 Aligned_cols=82 Identities=13% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHH
Q psy2712 93 LVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQ 170 (602)
Q Consensus 93 L~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~ 170 (602)
|..++...|..... ++.++-++..+.++|..|=-.++++|++++|.-+ .+..+ ....+.+.|-+.+..-.| ..|.
T Consensus 10 Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~-~~~l~-~f~~IF~~L~kl~~D~d~-~Vr~ 86 (97)
T PF12755_consen 10 LAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVAR-GEILP-YFNEIFDALCKLSADPDE-NVRS 86 (97)
T ss_pred HHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHcCCch-hHHH
Confidence 34444444444333 2244555555567788888889999999985421 12233 344566666665554444 3556
Q ss_pred HHHHHHH
Q psy2712 171 AIRCLYK 177 (602)
Q Consensus 171 Avr~L~a 177 (602)
|+..|..
T Consensus 87 ~a~~Ld~ 93 (97)
T PF12755_consen 87 AAELLDR 93 (97)
T ss_pred HHHHHHH
Confidence 6666543
No 69
>PF11333 DUF3135: Protein of unknown function (DUF3135); InterPro: IPR021482 This family of proteins with unkown function appears to be restricted to Proteobacteria.
Probab=29.22 E-value=1.7e+02 Score=25.54 Aligned_cols=66 Identities=15% Similarity=0.196 Sum_probs=47.3
Q ss_pred HHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hh
Q psy2712 224 IIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ES 302 (602)
Q Consensus 224 L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~ 302 (602)
.-.|..+|+..|+.|+.--.++|...| .. .|++-+.|++|+-.=+..-++...++ ..
T Consensus 6 FD~L~~LA~~dPe~fe~lr~~~~ee~I-----~~-----------------a~~~~q~rL~~lQ~~Id~~~~~~knP~~~ 63 (83)
T PF11333_consen 6 FDELKELAQNDPEAFEQLRQELIEEMI-----ES-----------------APEEMQPRLRALQFHIDMQRSRCKNPLHR 63 (83)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHH-----Hh-----------------CCHHHHHHHHHHHHHHHHHHHHcCChHHH
Confidence 457889999999999988877655554 11 35667889999999888888776555 44
Q ss_pred HHHHHHHHH
Q psy2712 303 AQKTFRMLN 311 (602)
Q Consensus 303 a~~v~kLL~ 311 (602)
.-.+.++++
T Consensus 64 ~~~l~~~m~ 72 (83)
T PF11333_consen 64 CVLLSRMMY 72 (83)
T ss_pred HHHHHHHHH
Confidence 445555554
No 70
>KOG1118|consensus
Probab=28.42 E-value=8.1e+02 Score=26.74 Aligned_cols=153 Identities=21% Similarity=0.222 Sum_probs=79.9
Q ss_pred CCCchhhHHHH-HHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHH
Q psy2712 235 PNKFPAVIKNT-VSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAV 313 (602)
Q Consensus 235 P~~fe~~~~~i-I~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~l 313 (602)
++.|.+-.+++ ++...|-+|+... .+|+.. .+..+||+.-+-+|-+. +|...+....++.--|=..+
T Consensus 25 dDdF~eme~~vdvt~~~v~~i~~~t--------teylqp---npa~rakl~~~n~lsKv-rG~~k~~~ypq~e~~Lg~~m 92 (366)
T KOG1118|consen 25 DDDFLEMEKEVDVTSKGVTKILAKT--------TEYLQP---NPASRAKLAMLNTLSKV-RGQVKEKGYPQTEGLLGDVM 92 (366)
T ss_pred ChHHHHHHHhHHHHHHHHHHHHHhh--------HHhcCC---ChhhhhHHHHHHHHHHh-cccccCCCCccchhHHHHHH
Confidence 44454333333 5666666666432 468764 35679998876665543 55433321122221112234
Q ss_pred HhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHh-hccCC--
Q psy2712 314 IVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKG-LGRNL-- 390 (602)
Q Consensus 314 L~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~-L~~~~-- 390 (602)
|..+-++........+. ..||.+|.+|+..+ +.| ..+||..|++-|+.+ +...+
T Consensus 93 ik~gkeLg~dSs~g~tl-----~~~Gesm~~i~evk--------~sl----------~~~vkq~FldpL~~l~~~elK~i 149 (366)
T KOG1118|consen 93 IKHGKELGDDSSFGHTL-----IDAGESMREIGEVK--------DSL----------DDNVKQNFLDPLQNLQLKELKDI 149 (366)
T ss_pred HHHHHhcCCCccccHHH-----HHHHHHHHHHHHHH--------HHH----------HHHHHHHHhHHHHHhhHHHHHHH
Confidence 44444555444333444 78999999998864 111 346777777777766 22100
Q ss_pred --CCCCCC---hhhHHHHhhccccchHHhHHHHHHHH
Q psy2712 391 --PNKCLP---LDFMGFYALGGLEEEKKLKMSTEKAL 422 (602)
Q Consensus 391 --~~~~Lp---~rf~~l~fL~A~EPd~elk~~v~~~~ 422 (602)
..++|- ..|=+.-==....||.++|+....+.
T Consensus 150 ~hh~KKLEgRRldyD~kkkk~~K~~dEelrqA~eKfE 186 (366)
T KOG1118|consen 150 QHHRKKLEGRRLDYDYKKKKQGKIKDEELRQALEKFE 186 (366)
T ss_pred HHHHHHhhhhhhHHHHHHHHhccCChHHHHHHHHHHH
Confidence 001121 23333333346678888888765554
No 71
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=28.37 E-value=1.1e+02 Score=20.92 Aligned_cols=25 Identities=40% Similarity=0.320 Sum_probs=18.9
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 362 NLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 362 ~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
.+..+++|++++||..-+..|....
T Consensus 4 ~l~~~l~D~~~~VR~~a~~~l~~i~ 28 (31)
T PF02985_consen 4 ILLQLLNDPSPEVRQAAAECLGAIA 28 (31)
T ss_dssp HHHHHHT-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 4557889999999999888776543
No 72
>PF05734 DUF832: Herpesvirus protein of unknown function (DUF832); InterPro: IPR008550 This entry contains BRRF2 from Epstein-Barr virus. This protein family is restricted to the gammaherpesvirus's; it's function is not known. The protein is phosphorylated and is associated with the viral tegument [].
Probab=26.41 E-value=7.4e+02 Score=25.65 Aligned_cols=116 Identities=19% Similarity=0.073 Sum_probs=68.5
Q ss_pred CCHHHHHHHHHHH-HHHHhhhhcccCcC------CcCCHH-HHH----HHHHHHhcCchHHH-HHHHHHHHHhhccCCCC
Q psy2712 326 MSKQEMAWMRLSA-GCAMLKICEQKGVG------DQYSPE-QFY----NLSRLLIDEVPEVR-EIFANKLHKGLGRNLPN 392 (602)
Q Consensus 326 t~~~~ksrLRL~A-a~~lLKLA~~~~~~------~~I~~~-~f~----~La~lvqD~~~~VR-~~Fl~KL~k~L~~~~~~ 392 (602)
++.-...+.||.- +..++.+|.. .|. ...+++ -|. +|+.++.++|-... .+-.+.|.++-...+||
T Consensus 63 ~~~~~~~k~~li~~l~~~~~~a~~-ly~~~~~~e~~~~~e~mf~~ck~rL~llle~~CGC~~C~~~~~~L~~~~~~~rpP 141 (228)
T PF05734_consen 63 TSHKTNEKENLIEVLQQVRFLAQY-LYKHIFPQETPSDPEEMFRDCKTRLALLLEDSCGCPECMRTVKGLTKIKGLFRPP 141 (228)
T ss_pred ChhhhhhhhcHHHHHHHHHHHHHH-HHHhccCCCCCCCHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhhcccCCC
Confidence 3444555666543 3333334432 232 344444 333 57789999887665 34566677766666788
Q ss_pred CCCChhhHHHHhhccccchHHhHHHHHHHHHcCCCCCchhHHHHHhhhccCCCCCCC
Q psy2712 393 KCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAYTS 449 (602)
Q Consensus 393 ~~Lp~rf~~l~fL~A~EPd~elk~~v~~~~~~~~~~~pEy~L~rLIhLLAHHPDF~~ 449 (602)
+-.|+.=-+. +++-+..-+..++-.....++|+.++=++.-..--|||+.
T Consensus 142 kl~PHt~~c~-------a~~~L~~l~n~avl~~~~~vs~~~l~~L~~~p~~~~~~~~ 191 (228)
T PF05734_consen 142 KLNPHTKHCY-------AENFLTSLYNQAVLCNSVSVSEFDLRDLVPDPDEFPDFDP 191 (228)
T ss_pred CCCCcHhHhH-------HHHHHHHHHHHHHhcCCCCcchhhHHHHccCchhccCCCH
Confidence 8888765442 1112222234444555677889999988888777788864
No 73
>KOG1248|consensus
Probab=26.02 E-value=1.5e+03 Score=29.00 Aligned_cols=312 Identities=13% Similarity=0.121 Sum_probs=159.9
Q ss_pred ccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHH-hhCCCCCCCchHHHHHHHhccc----CCc
Q psy2712 48 VMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLS-YVYPCHFMQQSSIQALLKMLTI----EDE 122 (602)
Q Consensus 48 ~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS-~~~P~lFk~~e~~~~L~~ll~~----~d~ 122 (602)
.-+-.|-++-.|.|+++..+...++. ..-......|..++ .++-..+++ .+-.|.+.+.+ .|+
T Consensus 559 e~~s~~AknfL~~lfn~ytq~~~~~~----------~~l~~~~~~L~~i~~~~~~~t~~d--v~~~l~~s~~e~as~~~~ 626 (1176)
T KOG1248|consen 559 EVLSNDAKNFLPRLFNVYTQTVAAGR----------KILASRSTVLEIIRVDYFTVTPTD--VVGSLKDSAGELASDLDE 626 (1176)
T ss_pred HHHhhhhhHHHHHHHHHhcCCCcccc----------ccHHHHHHHHHHHHHHHhhcccHH--HHHHHHHHHHhHhccchh
Confidence 33455666778888888865542221 12233445555555 888888888 66666665542 222
Q ss_pred cch----HHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccch
Q psy2712 123 IVA----PLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRT 198 (602)
Q Consensus 123 ~v~----e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~ 198 (602)
.+. -..|-.+..++.+.+ .-+ . +.+...-..+-...++..=|-|-++|-.++.... |.. ..
T Consensus 627 s~~~~~~~slLdl~~~~a~~~~---e~~-v-s~l~~v~~~~e~~~~~~vQkK~yrlL~~l~~~~s-------~~~---~~ 691 (1176)
T KOG1248|consen 627 SVASFKTLSLLDLLIALAPVQT---ESQ-V-SKLFTVDPEFENSSSTKVQKKAYRLLEELSSSPS-------GEG---LV 691 (1176)
T ss_pred hhhhHHHHHHHHHHHhhhcccc---chh-H-HHHHHhhHHhhccccHHHHHHHHHHHHHHhcCCc-------hhh---HH
Confidence 221 124555556665422 122 1 2233333344444477777888899865555421 000 11
Q ss_pred hhHHHHHHHHHhhcCCC-CCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCH
Q psy2712 199 VDLFVDILDKVKMNLTP-DSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPN 277 (602)
Q Consensus 199 ~~~~~~Iie~l~~~L~~-~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~ 277 (602)
.....+|.+.+.+.+.. .++-...+|.+|..|.+..|.-+. ++|...| -++++.-.+.+. .
T Consensus 692 ~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~----~~i~k~I-~EvIL~~Ke~n~-------------~ 753 (1176)
T KOG1248|consen 692 EQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHC----DLIPKLI-PEVILSLKEVNV-------------K 753 (1176)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHH----HHHHHHH-HHHHHhcccccH-------------H
Confidence 34556777777677744 335677889999999999993332 2233333 233322211110 0
Q ss_pred HHHHHHHHHHHHHHHhhcccc---hh--hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcC
Q psy2712 278 EVRCKMEGMKMMARWLLGLKA---HK--ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVG 352 (602)
Q Consensus 278 e~~aKi~aLK~lvn~Ll~~~~---~~--~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~ 352 (602)
.-+.+-..|.+|++. -...+ ++ +..++.+.++.+-+ -|+ .....+.= +.|..+++.=-.. ..+
T Consensus 754 aR~~Af~lL~~i~~i-~~~~d~g~e~~~~~lnefl~~Isagl--~gd-------~~~~~as~-Ivai~~il~e~~~-~ld 821 (1176)
T KOG1248|consen 754 ARRNAFALLVFIGAI-QSSLDDGNEPASAILNEFLSIISAGL--VGD-------STRVVASD-IVAITHILQEFKN-ILD 821 (1176)
T ss_pred HHhhHHHHHHHHHHH-HhhhcccccchHHHHHHHHHHHHhhh--ccc-------HHHHHHHH-HHHHHHHHHHHhc-ccc
Confidence 112234444555431 11111 11 34555554444331 122 11222222 5555555543322 133
Q ss_pred CcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCC-Chh--hHHHHhhccccchHHhHHH
Q psy2712 353 DQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCL-PLD--FMGFYALGGLEEEKKLKMS 417 (602)
Q Consensus 353 ~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~L-p~r--f~~l~fL~A~EPd~elk~~ 417 (602)
+-+.+..|..++..++-.++++|+.=+.-++.+...- |-.|+ |+. -|+-++...+|-...+|..
T Consensus 822 ~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~-pe~~l~~~~~~LL~sll~ls~d~k~~~r~K 888 (1176)
T KOG1248|consen 822 DETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKF-PEECLSPHLEELLPSLLALSHDHKIKVRKK 888 (1176)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC-CHHHHhhhHHHHHHHHHHHHHhhhHHHHHH
Confidence 3444445556666778899999998666666666541 22233 333 5666666777766666665
No 74
>KOG1062|consensus
Probab=25.76 E-value=1.3e+03 Score=28.30 Aligned_cols=311 Identities=15% Similarity=0.166 Sum_probs=157.8
Q ss_pred CccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhh
Q psy2712 121 DEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVD 200 (602)
Q Consensus 121 d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~ 200 (602)
+-.+|-.+|-+|.+++ -|++...+.+..++++..-.|---|-|+-|.+.+..... . +.+
T Consensus 120 nq~vVglAL~alg~i~--------s~EmardlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P------------~-l~e 178 (866)
T KOG1062|consen 120 NQYVVGLALCALGNIC--------SPEMARDLAPEVERLLQHRDPYIRKKAALCAVRFIRKVP------------D-LVE 178 (866)
T ss_pred CeeehHHHHHHhhccC--------CHHHhHHhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCc------------h-HHH
Confidence 4456667777777777 233445688899999999988544444444433332221 0 123
Q ss_pred HHHHHHHHHhhcCCC-CCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHH--HHHHHhccCCccccccCCCCccCCCCCH
Q psy2712 201 LFVDILDKVKMNLTP-DSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRK--IVKELLIKETEESYQYKKDWVFEEDLPN 277 (602)
Q Consensus 201 ~~~~Iie~l~~~L~~-~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~f--Ivk~lLl~~~~~~~~~~~~W~~d~~l~~ 277 (602)
+| +..-.+.|.. .+.-+.+.+.-+-++-+..|+..+-.- +.+..| |+|++....-++ +.+..-++| |
T Consensus 179 ~f---~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr-~l~~~lV~iLk~l~~~~ysp--eydv~gi~d----P 248 (866)
T KOG1062|consen 179 HF---VIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFR-DLVPSLVKILKQLTNSGYSP--EYDVHGISD----P 248 (866)
T ss_pred Hh---hHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHH-HHHHHHHHHHHHHhcCCCCC--ccCccCCCc----h
Confidence 33 2222233433 334478888888888888887644322 334444 344444333222 121122222 3
Q ss_pred HHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCH
Q psy2712 278 EVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSP 357 (602)
Q Consensus 278 e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~ 357 (602)
=.+.|+ ||++ +++|..+. ...+..-.+|..+. .+-|-.++ ||.++|=
T Consensus 249 FLQi~i--LrlL--riLGq~d~-daSd~M~DiLaqva-tntdsskN--------------~GnAILY------------- 295 (866)
T KOG1062|consen 249 FLQIRI--LRLL--RILGQNDA-DASDLMNDILAQVA-TNTDSSKN--------------AGNAILY------------- 295 (866)
T ss_pred HHHHHH--HHHH--HHhcCCCc-cHHHHHHHHHHHHH-hccccccc--------------chhHHHH-------------
Confidence 345443 4443 23333322 23344444444443 33332222 4444442
Q ss_pred HHHHHHHHHH--hcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhc---cccchHHhHHH-------------HH
Q psy2712 358 EQFYNLSRLL--IDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALG---GLEEEKKLKMS-------------TE 419 (602)
Q Consensus 358 ~~f~~La~lv--qD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~---A~EPd~elk~~-------------v~ 419 (602)
....++ -++....|..=++-|-|.|.... ..+||+++=.|. -.||..-.|.+ +.
T Consensus 296 ----E~V~TI~~I~~~~~LrvlainiLgkFL~n~d----~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIk 367 (866)
T KOG1062|consen 296 ----ECVRTIMDIRSNSGLRVLAINILGKFLLNRD----NNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIK 367 (866)
T ss_pred ----HHHHHHHhccCCchHHHHHHHHHHHHhcCCc----cceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHH
Confidence 222222 24667788888888888888777 889998776664 35555555544 11
Q ss_pred -HHH--------HcCCCCCchhHHHHHhhhccCCCCCCCcccHHHHHHHHHHHHHHHHHhhCCCCCcchHHHHHHHHHHh
Q psy2712 420 -KAL--------AQLPNFLPDFMLVFAIPVLTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQM 490 (602)
Q Consensus 420 -~~~--------~~~~~~~pEy~L~rLIhLLAHHPDF~~~~d~~~L~~~~~yL~FyLe~lat~~~eN~sl~f~~~i~erI 490 (602)
|++ ++.-..+---++-||... .+|| -.++..++.+..|-.+. +| --|+-.|+.-+
T Consensus 368 rralELs~~lvn~~Nv~~mv~eLl~fL~~~---d~~~--------k~~~as~I~~laEkfaP---~k--~W~idtml~Vl 431 (866)
T KOG1062|consen 368 RRALELSYALVNESNVRVMVKELLEFLESS---DEDF--------KADIASKIAELAEKFAP---DK--RWHIDTMLKVL 431 (866)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHhc---cHHH--------HHHHHHHHHHHHHhcCC---cc--hhHHHHHHHHH
Confidence 111 111111223334444322 3333 23455566666666655 23 34566666677
Q ss_pred hhccCCCCCCCcchhhHHhhcccCCCCCC
Q psy2712 491 KNCKDALNPDDENTNNVSALDLNGDENTN 519 (602)
Q Consensus 491 Kq~rDa~~~~~~~~n~~~lsDl~~~~~~~ 519 (602)
|...|-+.++--.+-..+++.=.+++..-
T Consensus 432 ~~aG~~V~~dv~~nll~LIa~~~~e~~~y 460 (866)
T KOG1062|consen 432 KTAGDFVNDDVVNNLLRLIANAFQELHEY 460 (866)
T ss_pred HhcccccchhhHHHHHHHHhcCCcchhhH
Confidence 77777776655444444444433444333
No 75
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=25.47 E-value=97 Score=29.37 Aligned_cols=69 Identities=14% Similarity=0.118 Sum_probs=46.8
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc------CCccc
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI------EDEIV 124 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~------~d~~v 124 (602)
+.++..|.++++.. +....-.|+.||..+.+.|..-|.. .+.+.+|++++.. .++.|
T Consensus 37 k~a~rai~krl~~~-------------n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~V 103 (139)
T cd03567 37 QLAVRLLAHKIQSP-------------QEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKV 103 (139)
T ss_pred HHHHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHH
Confidence 45677777776521 2345678999999999999999977 5667788888853 23456
Q ss_pred hHHHHHHHHhhc
Q psy2712 125 APLVFSVLSFLG 136 (602)
Q Consensus 125 ~e~~Lk~La~~~ 136 (602)
.+.+|..+-.-+
T Consensus 104 k~kil~li~~W~ 115 (139)
T cd03567 104 KTKIIELLYSWT 115 (139)
T ss_pred HHHHHHHHHHHH
Confidence 665555555433
No 76
>PF11417 Inhibitor_G39P: Loader and inhibitor of phage G40P; InterPro: IPR024424 G39P inhibits the initiation of DNA replication by blocking G40P replicative helicase. G39P has a bipartite stricture consisting of a folded N-terminal domain and an unfolded C-terminal domain. The C-terminal is essential for helicase interaction [].; PDB: 1NO1_B.
Probab=25.26 E-value=1.9e+02 Score=24.44 Aligned_cols=52 Identities=21% Similarity=0.271 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHhhCCC---CCCC---chHHHHHHHhcccCCccchHHHHHHHHhhccC
Q psy2712 87 ERGLKLLVMLSYVYPC---HFMQ---QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKY 138 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~---lFk~---~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~ 138 (602)
+-+.+||..|+..||. -|+. ++.++.=.++|.+-+-..+..+|+......+|
T Consensus 4 ~E~~~ll~~I~~aYP~~~~~f~~~~~k~~v~~W~~~L~d~~ye~v~~al~~~i~~~kf 61 (71)
T PF11417_consen 4 EETAKLLKLIKAAYPQWAGNFKPTDSKETVDLWYDMLKDYDYEIVMKALKKHIATNKF 61 (71)
T ss_dssp HHHHHHHHHHHHHST---TT---STHHHHHHHHHHHHTTS-HHHHHHHHHHHHHH-SS
T ss_pred HHHHHHHHHHHHHCCcchhccchhhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC
Confidence 3477999999999994 4544 23456666666654544555566655555544
No 77
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=24.97 E-value=2.4e+02 Score=34.06 Aligned_cols=83 Identities=16% Similarity=0.122 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHH
Q psy2712 88 RGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQ 167 (602)
Q Consensus 88 ~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q 167 (602)
-..--|..+++..|+.-.= .+..+.+=+.+.+|.+=-.+|+++..+. .+.+..-+++.+++.-..+.|.-
T Consensus 74 L~ylYl~~yak~~P~~~lL--avNti~kDl~d~N~~iR~~AlR~ls~l~--------~~el~~~~~~~ik~~l~d~~ayV 143 (757)
T COG5096 74 LLYLYLERYAKLKPELALL--AVNTIQKDLQDPNEEIRGFALRTLSLLR--------VKELLGNIIDPIKKLLTDPHAYV 143 (757)
T ss_pred HHHHHHHHHhccCHHHHHH--HHHHHHhhccCCCHHHHHHHHHHHHhcC--------hHHHHHHHHHHHHHHccCCcHHH
Confidence 3444455566666622222 3333333334556666666788888775 44445568888888888999977
Q ss_pred HHHHHHHHHHhcC
Q psy2712 168 AKQAIRCLYKNLG 180 (602)
Q Consensus 168 AK~Avr~L~a~~~ 180 (602)
=|.|+-|++.+..
T Consensus 144 Rk~Aalav~kly~ 156 (757)
T COG5096 144 RKTAALAVAKLYR 156 (757)
T ss_pred HHHHHHHHHHHHh
Confidence 7788888866653
No 78
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=24.49 E-value=2.3e+02 Score=31.20 Aligned_cols=97 Identities=15% Similarity=0.153 Sum_probs=70.1
Q ss_pred CCchhHHHHHHHHHHHhh--CCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHH
Q psy2712 82 PGTAGERGLKLLVMLSYV--YPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDM 159 (602)
Q Consensus 82 ~~~~~~~a~eLL~~IS~~--~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~ 159 (602)
.+...+.|++|...+-.+ .|..| +...++.|+......+......|+.+|..++- ..|+.+- ...=...|.+.
T Consensus 81 ~~~ER~QALkliR~~l~~~~~~~~~-~~~vvralvaiae~~~D~lr~~cletL~El~l--~~P~lv~--~~gG~~~L~~~ 155 (371)
T PF14664_consen 81 NDVEREQALKLIRAFLEIKKGPKEI-PRGVVRALVAIAEHEDDRLRRICLETLCELAL--LNPELVA--ECGGIRVLLRA 155 (371)
T ss_pred ChHHHHHHHHHHHHHHHhcCCcccC-CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHh--hCHHHHH--HcCCHHHHHHH
Confidence 345677899999999888 77666 44699999999887677788889999998872 2234332 12234677777
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCc
Q psy2712 160 IEKGTPKQAKQAIRCLYKNLGDSY 183 (602)
Q Consensus 160 al~GtP~qAK~Avr~L~a~~~~~~ 183 (602)
+.+|+...+...+.++..+.+...
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~ 179 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPR 179 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcc
Confidence 888887777777777767666543
No 79
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=24.48 E-value=92 Score=28.10 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=75.3
Q ss_pred hhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCC--CCCchh
Q psy2712 9 NVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGL--HPGTAG 86 (602)
Q Consensus 9 ~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~--~~~~~~ 86 (602)
.||-.+-.+|...|++|+--- -++.+..+...+.. +...+...+..+..- .||+.. ......
T Consensus 3 ~i~~kl~~~l~~i~~~~~P~~--Wp~~l~~l~~~~~~--------~~~~~~~~L~iL~~l------~eEi~~~~~~~~~~ 66 (148)
T PF08389_consen 3 FIRNKLAQVLAEIAKRDWPQQ--WPDFLEDLLQLLQS--------SPQHLELVLRILRIL------PEEITDFRRSSLSQ 66 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTTTT--STTHHHHHHHHHHT--------THHHHHHHHHHHHHH------HHHHHTSHCCHSHH
T ss_pred hHHHHHHHHHHHHHHHHChhh--CchHHHHHHHHhcc--------chhHHHHHHHHHHHH------HHHHHhhhchhhhH
Confidence 478888899999999996322 35566655443211 123333333333321 222211 122345
Q ss_pred HHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHH
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPK 166 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~ 166 (602)
++-.++-..+....|.+|.- ..+-|.......++.++..+|+++.+..+|-+.. .+. .+.+.+.+-++- +.|.
T Consensus 67 ~r~~~l~~~l~~~~~~i~~~--l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~-~i~--~~~~l~~~~~~l--~~~~ 139 (148)
T PF08389_consen 67 ERRRELKDALRSNSPDILEI--LSQILSQSSSEANEELVKAALKCLKSWISWIPIE-LII--NSNLLNLIFQLL--QSPE 139 (148)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HH-HHH--SSSHHHHHHHHT--TSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHH-Hhc--cHHHHHHHHHHc--CCHH
Confidence 66778888888887776655 3333332211212567778999999888653322 121 223555554444 3343
Q ss_pred HHHHHHHHH
Q psy2712 167 QAKQAIRCL 175 (602)
Q Consensus 167 qAK~Avr~L 175 (602)
---.|+.||
T Consensus 140 ~~~~A~~cl 148 (148)
T PF08389_consen 140 LREAAAECL 148 (148)
T ss_dssp CHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 333455554
No 80
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=23.87 E-value=2.2e+02 Score=30.65 Aligned_cols=64 Identities=14% Similarity=0.152 Sum_probs=44.7
Q ss_pred hhHHHHHhhhccCCCCCCCcc-c--HHHHHHHHHHHHHHHH--HhhCC-CCCcchHHHHHHHHHHhhhcc
Q psy2712 431 DFMLVFAIPVLTHTPAYTSNE-A--VDELLVMRACLWFILE--PLLTQ-PSDSFSSLFFKEMIDQMKNCK 494 (602)
Q Consensus 431 Ey~L~rLIhLLAHHPDF~~~~-d--~~~L~~~~~yL~FyLe--~lat~-~~eN~sl~f~~~i~erIKq~r 494 (602)
|..+|-++..|+|+|.-+... + ..-..+|++.|.|++. .+-.. +.=++-++||+..++|+|...
T Consensus 85 e~~~~~ll~~L~~~~~~~~~~l~~~qAL~kq~a~iL~f~l~fD~LK~~npaIqNDFSyYRRa~sr~k~~~ 154 (303)
T PF07159_consen 85 EKVFPKLLKELCSGPLKPKEHLEQKQALAKQFAEILDFVLKFDELKMMNPAIQNDFSYYRRALSRMKMNN 154 (303)
T ss_pred HHHHHHHHHHHhCCCCCchhhhHHhHHHHHHHHHHHHHHhhhhhhhccChhhhccHHHHHHHHHHHhhcc
Confidence 899999999999999876431 1 1235678999998864 44432 112245789999999988543
No 81
>KOG1949|consensus
Probab=23.33 E-value=1.4e+02 Score=35.76 Aligned_cols=110 Identities=17% Similarity=0.114 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHhhhhcccCcC------CcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCC----hhh
Q psy2712 330 EMAWMRLSAGCAMLKICEQKGVG------DQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLP----LDF 399 (602)
Q Consensus 330 ~ksrLRL~Aa~~lLKLA~~~~~~------~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp----~rf 399 (602)
--+-.|+.|+.-++-+--...=+ +.+-..||+.|--+..|+++.||+.=+..+.|..+.- -..+| .+-
T Consensus 186 ~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~f--We~iP~~i~~~l 263 (1005)
T KOG1949|consen 186 RNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKF--WEMIPPTILIDL 263 (1005)
T ss_pred CchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHH--HHHcCHHHHHHH
Confidence 34678888888888775432211 1122358999999999999999999988888877641 11144 455
Q ss_pred HHHHhh-ccccchHHhHHHHH---HHHHcCCCCC--chhHHHHHhhhc
Q psy2712 400 MGFYAL-GGLEEEKKLKMSTE---KALAQLPNFL--PDFMLVFAIPVL 441 (602)
Q Consensus 400 ~~l~fL-~A~EPd~elk~~v~---~~~~~~~~~~--pEy~L~rLIhLL 441 (602)
|+.++= .|+|.-.++|-.+- .++...|... .||.||+|=|+|
T Consensus 264 l~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l 311 (1005)
T KOG1949|consen 264 LKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSL 311 (1005)
T ss_pred HHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhh
Confidence 666665 57888888777743 3444444444 499999887776
No 82
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=22.47 E-value=56 Score=30.53 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=39.5
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhcccC--Ccc--chHHHHHHHHhhc
Q psy2712 82 PGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTIE--DEI--VAPLVFSVLSFLG 136 (602)
Q Consensus 82 ~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~~--d~~--v~e~~Lk~La~~~ 136 (602)
+.+..-.|+.||..+.+.+...|.. .+.+++|.+++... .+. |-+.++..+..-+
T Consensus 55 ~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~ 117 (140)
T PF00790_consen 55 NPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWA 117 (140)
T ss_dssp SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHH
Confidence 3356778999999999999888866 66788888877632 222 6666776666544
No 83
>KOG0212|consensus
Probab=22.47 E-value=3.8e+02 Score=31.50 Aligned_cols=132 Identities=20% Similarity=0.170 Sum_probs=81.3
Q ss_pred hhHHHHHHHHHHHhhCCC-CCCC-chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 85 AGERGLKLLVMLSYVYPC-HFMQ-QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~-lFk~-~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
..-.+++++..+-..+|. +|.+ ......|.+.+.+.+..|+..+|..++++++.. +.|...+.+...|+-|..+
T Consensus 352 tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~----~~~~~~~fl~sLL~~f~e~ 427 (675)
T KOG0212|consen 352 TRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSS----NSPNLRKFLLSLLEMFKED 427 (675)
T ss_pred HHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCc----ccccHHHHHHHHHHHHhhh
Confidence 444566766666666664 4444 567788888888776678888999999998542 2344556667777777775
Q ss_pred CCH--HHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC-CCCCcc-hHHHHHHHHHHhCCCCc
Q psy2712 163 GTP--KQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP-DSPNYR-TAIIALGHIAYNMPNKF 238 (602)
Q Consensus 163 GtP--~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~-~s~~l~-t~L~sLg~Ia~~aP~~f 238 (602)
-.- .-+-+=+|-|+. .-+. + .|+..++.=|+. +.-.|+ +-.++|.-|-..+|+.|
T Consensus 428 ~~~l~~Rg~lIIRqlC~-lL~a----------------E----~IYr~~a~ILe~e~nl~FAstMV~~Ln~iLlTStELf 486 (675)
T KOG0212|consen 428 TKLLEVRGNLIIRQLCL-LLNA----------------E----RIYRSIADILEREENLKFASTMVQALNTILLTSTELF 486 (675)
T ss_pred hHHHHhhhhHHHHHHHH-HhCH----------------H----HHHHHHHHHHhccccchHHHHHHHHHHhhhcccHHHH
Confidence 543 344455666633 3333 2 333333333322 122344 45888999999899888
Q ss_pred hhh
Q psy2712 239 PAV 241 (602)
Q Consensus 239 e~~ 241 (602)
.-+
T Consensus 487 ~LR 489 (675)
T KOG0212|consen 487 QLR 489 (675)
T ss_pred HHH
Confidence 633
No 84
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=22.33 E-value=1.2e+02 Score=28.18 Aligned_cols=54 Identities=13% Similarity=0.118 Sum_probs=38.4
Q ss_pred CchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhcccC--CccchHHHHHHHHhhc
Q psy2712 83 GTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTIE--DEIVAPLVFSVLSFLG 136 (602)
Q Consensus 83 ~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~~--d~~v~e~~Lk~La~~~ 136 (602)
....-.|+.||..+.+.|..-|.. .+.+++|..++... .+.|.+.+|..+..-+
T Consensus 51 ~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~ 110 (133)
T smart00288 51 PHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWA 110 (133)
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHH
Confidence 356678999999999999998876 66777888877643 2336666666655443
No 85
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=21.82 E-value=5e+02 Score=31.86 Aligned_cols=18 Identities=44% Similarity=0.615 Sum_probs=14.3
Q ss_pred CCcchhhHHHHHHHHHhh
Q psy2712 4 HDTDENVRYEVVTAIVTT 21 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~ 21 (602)
.|+|..||.+.+.++...
T Consensus 724 ~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 724 GDPDHRVRIEAVRALVSV 741 (897)
T ss_pred cCCCHHHHHHHHHHHhcc
Confidence 588888998888887654
No 86
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=21.70 E-value=3e+02 Score=31.42 Aligned_cols=173 Identities=16% Similarity=0.112 Sum_probs=0.0
Q ss_pred HHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHH
Q psy2712 35 LLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALL 114 (602)
Q Consensus 35 l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~ 114 (602)
+++|+ ++-.+=+...++.+|=-+-+. .++-.+.|.++|+-++.. +.+++.++.|.
T Consensus 224 il~fL--------~sg~f~d~~~~~~~liAsad~-------------~~~V~~~ae~~LKr~~~~----~ed~~~V~~L~ 278 (501)
T PF13001_consen 224 ILKFL--------ASGFFPDEERFPPLLIASADS-------------NSSVSDRAEDLLKRLSVS----LEDPDLVDRLF 278 (501)
T ss_pred HHHHH--------HhcCCCcHhHHhheeeEEeCC-------------cchHHHHHHHHHhhcCCC----CCCHHHHHHHH
Q ss_pred Hhcc------cCCccchHHHH--HHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHH---HHHHH---HHhcC
Q psy2712 115 KMLT------IEDEIVAPLVF--SVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQ---AIRCL---YKNLG 180 (602)
Q Consensus 115 ~ll~------~~d~~v~e~~L--k~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~---Avr~L---~a~~~ 180 (602)
.+.. ++.-.-+...+ |+|..++|.......+| -+-++-..+++|+..-+|. |+..+ .....
T Consensus 279 ~Ly~G~~~~~~~~~~pa~~~lq~kIL~~L~kS~~Aa~~~~-----~~~~i~~~~l~~~~~~~klk~~~l~F~~~~~~~~~ 353 (501)
T PF13001_consen 279 DLYLGKGIPPENGRPPASPRLQEKILSLLSKSVIAATSFP-----NILQIVFDGLYSDNTNSKLKSLALQFIRGSSWIFK 353 (501)
T ss_pred HHHHhcCCchhcCCCCCCHHHHHHHHHHHHHhHHHHhCCc-----cHHHHHhccccCCccccccchhcchhhhcchHHhh
Q ss_pred CCcccccccccccCccchhhHHHHHHHHHhhcCCCCC------CCcch-------HHHHHHHHHHhCCCCchhhHHHHHH
Q psy2712 181 DSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDS------PNYRT-------AIIALGHIAYNMPNKFPAVIKNTVS 247 (602)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s------~~l~t-------~L~sLg~Ia~~aP~~fe~~~~~iI~ 247 (602)
... ..+.+.+-..|...+-... +...+ ...+||.|++.+|..|..+. . +.
T Consensus 354 ~~~---------------~~~l~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p~l~~~d~-~-li 416 (501)
T PF13001_consen 354 HIS---------------PQILKLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAPSLFSKDL-S-LI 416 (501)
T ss_pred hcC---------------HHHHHHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCcccccccH-H-HH
Q ss_pred HHHHHHH
Q psy2712 248 RKIVKEL 254 (602)
Q Consensus 248 ~fIvk~l 254 (602)
.++...+
T Consensus 417 ~~LF~sL 423 (501)
T PF13001_consen 417 EFLFDSL 423 (501)
T ss_pred HHHHHHh
No 87
>PF05536 Neurochondrin: Neurochondrin
Probab=21.60 E-value=1e+03 Score=27.54 Aligned_cols=93 Identities=16% Similarity=0.122 Sum_probs=53.5
Q ss_pred CCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCc-cchHHHHHHHHhhccCCCCchhhhhHHhHHHHHH
Q psy2712 81 HPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDE-IVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPIC 156 (602)
Q Consensus 81 ~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~-~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~L 156 (602)
+++.+..-|..+|.-++. -|.+=.+ -+.+..|++++..... .+++.++++|+.++-+..-++.+ ....-++.|
T Consensus 69 ~~~~~~~LavsvL~~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aL--l~~g~v~~L 145 (543)
T PF05536_consen 69 PPEEYLSLAVSVLAAFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKAL--LESGAVPAL 145 (543)
T ss_pred CHHHHHHHHHHHHHHHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHH--HhcCCHHHH
Confidence 366788889999998888 6666544 4456667777764333 56666999999888442211111 112233444
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q psy2712 157 QDMIEKGTPKQAKQAIRCLYK 177 (602)
Q Consensus 157 k~~al~GtP~qAK~Avr~L~a 177 (602)
-..+.. .|.+--.|.+++..
T Consensus 146 ~ei~~~-~~~~~E~Al~lL~~ 165 (543)
T PF05536_consen 146 CEIIPN-QSFQMEIALNLLLN 165 (543)
T ss_pred HHHHHh-CcchHHHHHHHHHH
Confidence 444444 33333345555533
No 88
>KOG1240|consensus
Probab=20.88 E-value=3.6e+02 Score=34.37 Aligned_cols=86 Identities=15% Similarity=0.170 Sum_probs=51.8
Q ss_pred HHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchH
Q psy2712 333 WMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEK 412 (602)
Q Consensus 333 rLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~ 412 (602)
+.|+.|=.-+.+|+++-.-+..+.. ..-=+.-+.+|+...||-.=+.-|.+.|..-++ +|.
T Consensus 438 ~tK~~ALeLl~~lS~~i~de~~LDR-VlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~---~~~--------------- 498 (1431)
T KOG1240|consen 438 QTKLAALELLQELSTYIDDEVKLDR-VLPYFVHLLMDSEADVRATALETLTELLALVRD---IPP--------------- 498 (1431)
T ss_pred hhHHHHHHHHHHHhhhcchHHHHhh-hHHHHHHHhcCchHHHHHHHHHHHHHHHhhccC---CCc---------------
Confidence 4456666666666665332222211 111223467888888888888888888764331 211
Q ss_pred HhHHHHHHHHHcCCCCCchhHHHHHhhhccC-CCCCC
Q psy2712 413 KLKMSTEKALAQLPNFLPDFMLVFAIPVLTH-TPAYT 448 (602)
Q Consensus 413 elk~~v~~~~~~~~~~~pEy~L~rLIhLLAH-HPDF~ 448 (602)
.....+|||+||+|=|++-- .+...
T Consensus 499 -----------~daniF~eYlfP~L~~l~~d~~~~~v 524 (1431)
T KOG1240|consen 499 -----------SDANIFPEYLFPHLNHLLNDSSAQIV 524 (1431)
T ss_pred -----------ccchhhHhhhhhhhHhhhccCcccee
Confidence 22467799999999999866 44443
No 89
>KOG2973|consensus
Probab=20.19 E-value=3.4e+02 Score=29.61 Aligned_cols=87 Identities=17% Similarity=0.159 Sum_probs=51.6
Q ss_pred HHHHHHHhcccCCccchHHHHHHHH-hhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLS-FLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEV 187 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La-~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~ 187 (602)
...+|++++..-.|.|.-.+.+.+. .+|. ... .+...+..+++.+.+++..-.| |..|+++|.-.+++.+-+
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~-~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~-- 76 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQ-SLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELR-- 76 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhcccc--chh-hhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHH--
Confidence 5667888888767755554544444 4442 111 1222334567777777777666 888899996666654322
Q ss_pred ccccccCccchhhHHHHHHHHHhhcC
Q psy2712 188 MDENSENGVRTVDLFVDILDKVKMNL 213 (602)
Q Consensus 188 ~~~~~~~~~~~~~~~~~Iie~l~~~L 213 (602)
+..+.++++-++..+
T Consensus 77 -----------~~ll~~~~k~l~~~~ 91 (353)
T KOG2973|consen 77 -----------KKLLQDLLKVLMDML 91 (353)
T ss_pred -----------HHHHHHHHHHHHHHh
Confidence 445555666665555
Done!