Query psy2712
Match_columns 602
No_of_seqs 150 out of 199
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 23:18:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2712.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2712hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fdd_A Transportin-1; heat rep 97.6 0.029 9.9E-07 64.3 29.5 318 84-442 105-452 (852)
2 1ibr_B P95, importin beta-1 su 97.3 0.2 6.8E-06 51.8 30.6 291 87-420 107-430 (462)
3 1u6g_C TIP120 protein, CAND1; 97.0 0.036 1.2E-06 66.2 21.4 263 85-387 102-403 (1230)
4 1qgr_A Protein (importin beta 96.9 0.34 1.2E-05 54.6 27.8 314 87-443 107-462 (876)
5 4fdd_A Transportin-1; heat rep 96.7 0.16 5.6E-06 58.0 23.5 323 4-386 100-470 (852)
6 1b3u_A Protein (protein phosph 96.7 0.053 1.8E-06 58.1 18.1 275 84-417 102-382 (588)
7 2bpt_A Importin beta-1 subunit 96.7 0.93 3.2E-05 51.0 28.9 315 85-443 111-465 (861)
8 1wa5_B Importin alpha subunit; 96.6 0.027 9.2E-07 60.8 14.8 276 52-387 169-457 (530)
9 2bpt_A Importin beta-1 subunit 96.6 0.2 6.7E-06 56.5 22.3 227 87-347 574-811 (861)
10 2vgl_B AP-2 complex subunit be 96.5 0.2 7E-06 55.3 21.9 209 4-242 96-321 (591)
11 4b8j_A Importin subunit alpha- 96.5 0.026 8.7E-07 60.8 14.0 276 52-386 156-442 (528)
12 2vgl_B AP-2 complex subunit be 96.4 0.21 7.2E-06 55.2 21.3 132 84-242 297-429 (591)
13 1u6g_C TIP120 protein, CAND1; 96.2 0.87 3E-05 54.3 26.4 257 85-388 450-722 (1230)
14 2jdq_A Importin alpha-1 subuni 96.2 0.09 3.1E-06 54.4 15.9 273 54-386 105-389 (450)
15 2jdq_A Importin alpha-1 subuni 96.0 0.14 4.8E-06 52.9 16.2 276 53-387 146-443 (450)
16 1w63_A Adapter-related protein 95.9 0.3 1E-05 54.4 19.1 234 83-378 327-568 (618)
17 4hxt_A De novo protein OR329; 95.9 0.025 8.6E-07 53.6 8.8 206 5-239 13-248 (252)
18 1w63_A Adapter-related protein 95.9 0.027 9.4E-07 62.9 10.5 258 109-417 108-369 (618)
19 1b3u_A Protein (protein phosph 95.8 0.15 5.1E-06 54.5 15.6 276 109-442 88-373 (588)
20 1wa5_B Importin alpha subunit; 95.4 0.19 6.6E-06 54.1 14.7 277 52-388 211-511 (530)
21 4b8j_A Importin subunit alpha- 95.4 0.081 2.8E-06 56.9 11.6 272 52-385 113-398 (528)
22 4db6_A Armadillo repeat protei 95.2 0.057 2E-06 50.3 8.5 143 4-181 22-168 (210)
23 1qgr_A Protein (importin beta 94.6 0.48 1.6E-05 53.4 15.7 256 87-379 582-863 (876)
24 2z6g_A B-catenin; FULL-length, 94.6 0.49 1.7E-05 54.3 15.8 135 85-236 131-267 (780)
25 1ibr_B P95, importin beta-1 su 94.6 4.8 0.00016 41.2 23.4 260 84-387 145-437 (462)
26 4hxt_A De novo protein OR329; 94.4 0.34 1.2E-05 45.6 11.9 233 109-387 3-241 (252)
27 3b2a_A TON_1937, putative unch 94.4 0.094 3.2E-06 52.7 8.0 134 14-171 116-252 (265)
28 4db8_A Armadillo-repeat protei 94.2 0.086 2.9E-06 50.4 7.2 184 5-233 23-210 (252)
29 2vgl_A Adaptor protein complex 94.0 1.2 4E-05 50.0 17.0 263 118-417 121-388 (621)
30 1jdh_A Beta-catenin; beta-cate 93.9 2.4 8.4E-05 44.6 18.4 294 103-445 14-321 (529)
31 2z6h_A Catenin beta-1, beta-ca 93.9 1.5 5.2E-05 48.5 17.5 233 109-386 15-252 (644)
32 4db8_A Armadillo-repeat protei 93.7 0.24 8.2E-06 47.2 9.3 140 6-180 66-209 (252)
33 4db6_A Armadillo repeat protei 93.6 0.28 9.5E-06 45.5 9.4 139 5-178 65-207 (210)
34 2vgl_A Adaptor protein complex 93.5 4.3 0.00015 45.4 20.5 82 84-175 344-428 (621)
35 2z6h_A Catenin beta-1, beta-ca 93.5 1.7 5.7E-05 48.2 16.9 266 52-380 10-285 (644)
36 2z6g_A B-catenin; FULL-length, 92.9 3.6 0.00012 47.1 19.1 241 5-295 161-429 (780)
37 1oyz_A Hypothetical protein YI 92.7 7.6 0.00026 37.5 19.7 241 109-446 24-266 (280)
38 1jdh_A Beta-catenin; beta-cate 92.6 1.5 5.2E-05 46.2 14.4 272 52-383 13-291 (529)
39 3tpo_A Importin subunit alpha- 92.5 0.83 2.8E-05 49.5 12.4 275 51-387 157-449 (529)
40 3ul1_B Importin subunit alpha- 91.8 3.1 0.00011 44.9 15.9 278 52-387 139-430 (510)
41 2qk2_A LP04448P; mini spindles 91.6 1.2 4.3E-05 42.7 11.3 135 84-236 72-209 (242)
42 2qk2_A LP04448P; mini spindles 91.3 2.3 7.8E-05 40.8 12.7 143 87-252 33-183 (242)
43 2qk1_A Protein STU2; STU2P, XM 90.8 1.4 4.7E-05 43.5 10.9 166 96-298 44-224 (249)
44 1xqr_A HSPBP1 protein; armadil 89.6 0.72 2.4E-05 47.0 7.8 194 6-234 24-240 (296)
45 3now_A UNC-45 protein, SD10334 89.5 2.8 9.6E-05 48.7 13.6 272 52-386 417-736 (810)
46 3ltm_A Alpha-REP4; protein eng 88.6 15 0.0005 33.8 17.7 189 104-387 15-203 (211)
47 3ltj_A Alpharep-4; protein eng 88.3 3.5 0.00012 37.9 10.9 131 4-177 24-164 (201)
48 3u0r_A Apoptosis inhibitor 5; 87.9 36 0.0012 37.4 22.0 102 110-236 31-133 (507)
49 3b2a_A TON_1937, putative unch 87.4 6.9 0.00024 39.3 12.9 203 106-365 31-234 (265)
50 3tpo_A Importin subunit alpha- 86.8 1.2 4.2E-05 48.2 7.9 156 53-235 290-452 (529)
51 3ltm_A Alpha-REP4; protein eng 85.7 3 0.0001 38.7 9.0 106 42-181 5-110 (211)
52 2qk1_A Protein STU2; STU2P, XM 84.6 10 0.00035 37.1 12.7 149 85-244 77-233 (249)
53 1oyz_A Hypothetical protein YI 84.3 5.2 0.00018 38.7 10.4 148 4-178 33-186 (280)
54 3nmz_A APC variant protein; pr 81.8 13 0.00044 40.1 13.2 164 51-239 281-457 (458)
55 3ul1_B Importin subunit alpha- 81.7 60 0.002 34.7 20.6 147 5-181 154-304 (510)
56 3nmw_A APC variant protein; AR 81.6 18 0.00061 37.5 13.7 165 51-240 165-342 (354)
57 3ltj_A Alpharep-4; protein eng 81.1 32 0.0011 31.2 19.9 183 107-384 13-195 (201)
58 3now_A UNC-45 protein, SD10334 80.2 20 0.00069 41.6 14.7 110 57-180 331-450 (810)
59 2iw3_A Elongation factor 3A; a 77.0 8.7 0.0003 45.6 10.5 187 84-314 30-222 (986)
60 1xm9_A Plakophilin 1; armadill 72.0 25 0.00084 37.3 11.7 129 57-213 3-136 (457)
61 3opb_A SWI5-dependent HO expre 66.0 1.1E+02 0.0038 35.3 16.1 235 108-386 457-727 (778)
62 2db0_A 253AA long hypothetical 64.5 24 0.00081 34.6 8.5 144 52-236 28-174 (253)
63 1xm9_A Plakophilin 1; armadill 60.2 45 0.0015 35.2 10.9 98 107-217 282-384 (457)
64 2db0_A 253AA long hypothetical 59.9 1.2E+02 0.004 29.8 12.4 211 106-386 30-245 (253)
65 1wa5_C Importin alpha RE-expor 53.2 3.1E+02 0.011 31.5 27.9 51 85-137 101-152 (960)
66 1xqr_A HSPBP1 protein; armadil 46.9 41 0.0014 33.9 7.5 143 5-181 93-239 (296)
67 3l6x_A Catenin delta-1; cateni 46.8 68 0.0023 35.8 9.9 117 49-181 41-164 (584)
68 1te4_A Conserved protein MTH18 43.2 49 0.0017 28.2 6.5 26 107-132 103-128 (131)
69 1te4_A Conserved protein MTH18 38.8 71 0.0024 27.1 6.9 59 109-180 43-101 (131)
70 3tt9_A Plakophilin-2; cell adh 38.7 73 0.0025 31.1 7.6 111 56-181 8-125 (233)
71 2x19_B Importin-13; nuclear tr 38.3 1.5E+02 0.0051 33.9 11.3 141 85-244 465-612 (963)
72 3l6x_A Catenin delta-1; cateni 35.6 4.9E+02 0.017 28.8 19.0 138 58-216 237-407 (584)
73 3zyq_A Hepatocyte growth facto 33.4 54 0.0018 31.9 5.7 69 55-136 44-117 (226)
74 3u0r_A Apoptosis inhibitor 5; 32.5 2.4E+02 0.0081 31.0 10.9 75 84-168 43-117 (507)
75 3tjz_B Coatomer subunit gamma; 29.8 1.1E+02 0.0038 31.8 7.7 186 94-347 93-279 (355)
76 3nmw_A APC variant protein; AR 29.8 94 0.0032 32.0 7.1 122 50-182 207-336 (354)
77 3opb_A SWI5-dependent HO expre 29.6 1.3E+02 0.0045 34.7 8.8 139 33-182 475-637 (778)
78 3ldz_A STAM-1, signal transduc 26.7 31 0.0011 31.1 2.4 69 55-136 41-113 (140)
79 3g2s_A C-terminal fragment of 26.4 43 0.0015 30.7 3.3 54 83-136 62-125 (149)
80 1juq_A ADP-ribosylation factor 25.8 76 0.0026 29.6 5.0 69 55-136 49-127 (171)
81 1mhq_A ADP-ribosylation factor 25.0 50 0.0017 30.1 3.5 69 55-136 37-115 (148)
82 4atg_A TAF6; transcription, TF 24.8 1.9E+02 0.0064 27.7 7.7 152 199-411 10-163 (196)
83 3nmz_A APC variant protein; pr 24.6 1.2E+02 0.0039 32.7 6.8 117 54-181 328-451 (458)
84 2x19_B Importin-13; nuclear tr 23.6 2.7E+02 0.0092 31.7 10.1 145 86-251 424-574 (963)
85 2x1g_F Cadmus; transport prote 22.5 1.2E+02 0.004 34.9 6.8 138 84-242 479-626 (971)
86 2of3_A ZYG-9; multifunctional 22.4 62 0.0021 32.5 3.9 51 82-136 145-195 (266)
No 1
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=97.61 E-value=0.029 Score=64.33 Aligned_cols=318 Identities=12% Similarity=0.070 Sum_probs=189.2
Q ss_pred chhHHHHHHHHHHHhh-CCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhh-----hHHhHHHHHHH
Q psy2712 84 TAGERGLKLLVMLSYV-YPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFK-----EEMKQLVPICQ 157 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~-~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p-----~~~~~l~~~Lk 157 (602)
.....+.+.+..|+.. +|.-.. +.+..|++.+...++.+.+.++.+|..+.+ ..+..+. .....+.+.|.
T Consensus 105 ~vr~~~a~~i~~ia~~~~~~~wp--~ll~~L~~~l~~~~~~~r~~al~~L~~i~~--~~~~~~~~~~~~~~~~~il~~l~ 180 (852)
T 4fdd_A 105 LIRATVGILITTIASKGELQNWP--DLLPKLCSLLDSEDYNTCEGAFGALQKICE--DSAEILDSDVLDRPLNIMIPKFL 180 (852)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTCT--THHHHHHHHHSCSSHHHHHHHHHHHHHHHH--HHTTHHHHCSSSSCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCccccH--HHHHHHHHHHcCCCHHHHHHHHHHHHHHHH--HhHHHhchhhhcchHHHHHHHHH
Confidence 4556677777777776 454444 499999999988788888889999998873 2222111 01234666666
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCC
Q psy2712 158 DMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPN 236 (602)
Q Consensus 158 ~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~ 236 (602)
++....++.--..|+++|..+..... ......+.+++..+...+..+++. -..++.+|+.++...|+
T Consensus 181 ~~l~~~~~~vR~~A~~aL~~~~~~~~------------~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~ 248 (852)
T 4fdd_A 181 QFFKHSSPKIRSHAVACVNQFIISRT------------QALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMD 248 (852)
T ss_dssp TTTTCSSHHHHHHHHHHHHTTTTTTC------------HHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred HHhcCCCHHHHHHHHHHHHHHHhccc------------HHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHH
Confidence 66566677766788899865544321 111244567777776655544433 34578899999999999
Q ss_pred CchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcc--cch-hhhHHHHHHHHHHH
Q psy2712 237 KFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGL--KAH-KESAQKTFRMLNAV 313 (602)
Q Consensus 237 ~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~--~~~-~~~a~~v~kLL~~l 313 (602)
.+..+... +..++++- + .+. + ...+..|+.++...+... +.. ......++..|...
T Consensus 249 ~~~~~l~~-l~~~l~~~-~-~~~----------------~--~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~ 307 (852)
T 4fdd_A 249 RLLPHMHN-IVEYMLQR-T-QDQ----------------D--ENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNG 307 (852)
T ss_dssp HHGGGHHH-HHHHHHHH-H-TCS----------------S--HHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHH-HHHHHHHH-c-cCC----------------c--HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Confidence 98888876 56666542 2 110 1 123567777766654321 100 12344555555444
Q ss_pred Hhh--------cCcccCCCCCCHH-HHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q psy2712 314 IVN--------KGDLLQSDKMSKQ-EMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHK 384 (602)
Q Consensus 314 L~~--------~Gel~~~~~t~~~-~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k 384 (602)
+.- +++.......... ....+|-+|+.++-.|++.. ++.+-+..+..+...++|+.+.||..=+.-|..
T Consensus 308 l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~--~~~~~~~l~~~l~~~l~~~~~~~R~aa~~alg~ 385 (852)
T 4fdd_A 308 MKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVY--RDELLPHILPLLKELLFHHEWVVKESGILVLGA 385 (852)
T ss_dssp TSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred cCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 410 1221111000000 12357889999999999864 456666677777788899999999987776655
Q ss_pred hhccCCCCCCC---ChhhHHHHhhccccchHHhHHHHHHHH-------Hc-CCCCCchhHHHHHhhhcc
Q psy2712 385 GLGRNLPNKCL---PLDFMGFYALGGLEEEKKLKMSTEKAL-------AQ-LPNFLPDFMLVFAIPVLT 442 (602)
Q Consensus 385 ~L~~~~~~~~L---p~rf~~l~fL~A~EPd~elk~~v~~~~-------~~-~~~~~pEy~L~rLIhLLA 442 (602)
..... +..+ -...+..++-...||++.+|......+ .. ....+.+.+++.++..|.
T Consensus 386 i~~~~--~~~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~~ll~~L~~~L~ 452 (852)
T 4fdd_A 386 IAEGC--MQGMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTYLKPLMTELLKRIL 452 (852)
T ss_dssp TTTTT--HHHHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSCTTTTHHHHHHHHHHHHT
T ss_pred HHhcc--hHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHh
Confidence 44210 0001 123345555556889999988743332 21 223344677888888875
No 2
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=97.32 E-value=0.2 Score=51.75 Aligned_cols=291 Identities=10% Similarity=0.017 Sum_probs=166.4
Q ss_pred HHHHHHHHHHHhh-CCC-CCCCchHHHHHHHhcccC--CccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 87 ERGLKLLVMLSYV-YPC-HFMQQSSIQALLKMLTIE--DEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 87 ~~a~eLL~~IS~~-~P~-lFk~~e~~~~L~~ll~~~--d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
..+...+..|+.. +|. .+.. .+..|++.+..+ ++.+.+.+|.+|..+.+... ++.+......+.+.+......
T Consensus 107 ~~~~~~i~~ia~~~~~~~~w~~--ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~ 183 (462)
T 1ibr_B 107 SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRK 183 (462)
T ss_dssp CSHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-GGGTGGGHHHHHHHHHHHHST
T ss_pred hHHHHHHHHHHHHhccccccHH--HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCC-chhhHhHHHHHHHHHHHHhCC
Confidence 4466667777766 574 5555 999999998876 78888889999998873110 121222234577777777766
Q ss_pred C--CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCch
Q psy2712 163 G--TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFP 239 (602)
Q Consensus 163 G--tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe 239 (602)
. ++.--+.|++++..+..--+.. .. . ......++..+...+...++. -.+.+.+|+.++...|+.|.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~-------~~-~--~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~ 253 (462)
T 1ibr_B 184 EEPSNNVKLAATNALLNSLEFTKAN-------FD-K--ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (462)
T ss_dssp TCCCHHHHHHHHHHHHHHTTTTHHH-------HT-S--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHh-------hh-h--hHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6 5665667888886543321100 00 0 011112344443333333322 34578899999999999888
Q ss_pred hhHH-HHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhccc------c----------hh--
Q psy2712 240 AVIK-NTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLK------A----------HK-- 300 (602)
Q Consensus 240 ~~~~-~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~------~----------~~-- 300 (602)
.+.. . +..++++-+ ++ .++ ..+..|+.++...+.... + ..
T Consensus 254 ~~~~~~-l~~~~~~~~--~~----------------~~~--~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (462)
T 1ibr_B 254 TYMGPA-LFAITIEAM--KS----------------DID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (462)
T ss_dssp TTTTTT-HHHHHHHHH--HC----------------SSH--HHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCC
T ss_pred HHHHHH-HHHHHHHHH--cC----------------Cch--HHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhH
Confidence 8876 6 455554322 10 011 234566666555443210 0 00
Q ss_pred hh----HHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHH
Q psy2712 301 ES----AQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVRE 376 (602)
Q Consensus 301 ~~----a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~ 376 (602)
.. ...++..+...+...++-..+ +....|-+|+.++-.|+.. +++.+.+..+..+...++|+.+.||.
T Consensus 313 ~~~~~~~~~l~p~l~~~l~~~d~d~~~------~~~~~r~~a~~~L~~l~~~--~~~~~~~~~~~~l~~~l~~~~~~~r~ 384 (462)
T 1ibr_B 313 FYAKGALQYLVPILTQTLTKQDENDDD------DDWNPCKAAGVCLMLLATC--CEDDIVPHVLPFIKEHIKNPDWRYRD 384 (462)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCSSCCT------TCCSHHHHHHHHHHHHHHH--TTTTHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHhhhccHHHHHHHHhccccccc------ccchHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHhcCCChHHHH
Confidence 12 244444444444332210001 1125688999999999885 44555566666777788999999999
Q ss_pred HHHHHHHHhhccCCCCCCC---ChhhHHHHhhccccchHHhHHHHHH
Q psy2712 377 IFANKLHKGLGRNLPNKCL---PLDFMGFYALGGLEEEKKLKMSTEK 420 (602)
Q Consensus 377 ~Fl~KL~k~L~~~~~~~~L---p~rf~~l~fL~A~EPd~elk~~v~~ 420 (602)
.-+.-|-..... -.+..+ -...++.+.=.-.+|++.+|.....
T Consensus 385 aal~~l~~l~~~-~~~~~~~~~l~~~~~~l~~~l~d~~~~Vr~~a~~ 430 (462)
T 1ibr_B 385 AAVMAFGCILEG-PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAW 430 (462)
T ss_dssp HHHHHHHHTSSS-SCTTTTCTTTTTHHHHHHHGGGCSCHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 988877665532 111111 1345555555567888888877433
No 3
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.97 E-value=0.036 Score=66.21 Aligned_cols=263 Identities=10% Similarity=0.057 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHhhCCCC-----CC---CchHHHHHHHhcc-cCCccchHHHHHHHHhhccCCCCchh-hhhHHhHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPCH-----FM---QQSSIQALLKMLT-IEDEIVAPLVFSVLSFLGKYRPLGEV-FKEEMKQLVP 154 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~l-----Fk---~~e~~~~L~~ll~-~~d~~v~e~~Lk~La~~~k~k~~~~~-~p~~~~~l~~ 154 (602)
....+...|..|+...+.- +. .++.+..|.+.+. .+++.+.+.++.+|..+... .++. .| ....+.+
T Consensus 102 vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~--~~~~l~~-~~~~ll~ 178 (1230)
T 1u6g_C 102 LRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSR--QGGLLVN-FHPSILT 178 (1230)
T ss_dssp HHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHH--TCSSCTT-THHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH--hHhHHHH-HHHHHHH
Confidence 4556777788888777654 11 1456777777776 35677888899999877521 1111 23 2234566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhC
Q psy2712 155 ICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNM 234 (602)
Q Consensus 155 ~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~a 234 (602)
.|...-....+.--+.|+++|..+....+. .....++..+++.+... .+...-...+.+++.|+...
T Consensus 179 ~l~~~L~~~~~~vR~~a~~al~~l~~~~~~-----------~~~~~~l~~l~~~L~~~--~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 179 CLLPQLTSPRLAVRKRTIIALGHLVMSCGN-----------IVFVDLIEHLLSELSKN--DSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp HHGGGGGCSSHHHHHHHHHHHHHHTTTC---------------CTTHHHHHHHHHHHT--CSSCSCTTHHHHHHHHHHHS
T ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHHHHHhccC--CchhHHHHHHHHHHHHHHHh
Confidence 665555566676667788888665543320 00112344444444332 11234566899999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHH
Q psy2712 235 PNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAV 313 (602)
Q Consensus 235 P~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~l 313 (602)
|..|..+..+ +..++++-+ . + ++++ .|..++.++..++..+...- .....++..+...
T Consensus 246 ~~~~~~~l~~-l~~~ll~~l-~-d------------~~~~------vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~ 304 (1230)
T 1u6g_C 246 GHRIGEYLEK-IIPLVVKFC-N-V------------DDDE------LREYCIQAFESFVRRCPKEVYPHVSTIINICLKY 304 (1230)
T ss_dssp SGGGTTSCTT-HHHHHHHHH-S-S------------CCTT------THHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHH-HHHHHHHHh-c-C------------CCHH------HHHHHHHHHHHHHHHChHHHHHhHHHHHHHHHHH
Confidence 9988888766 666665533 1 1 0111 25677777777777655331 2334444444333
Q ss_pred HhhcC------c------cc-----CC-C----CC-CHHHHH-HHHHHHHHHHhhhhcccCcCCcCCHHHHHH----HHH
Q psy2712 314 IVNKG------D------LL-----QS-D----KM-SKQEMA-WMRLSAGCAMLKICEQKGVGDQYSPEQFYN----LSR 365 (602)
Q Consensus 314 L~~~G------e------l~-----~~-~----~t-~~~~ks-rLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~----La~ 365 (602)
+..+- + +. .. . .. ...+.+ ++|-+|+.++-.++.. +.+.+.+ .|.. +..
T Consensus 305 l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~--~~~~~~~-~~~~l~~~l~~ 381 (1230)
T 1u6g_C 305 LTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVST--RHEMLPE-FYKTVSPALIS 381 (1230)
T ss_dssp CCCC------------------------------------CTTHHHHHHHHHHHHHHTT--CCTTHHH-HHTTTHHHHHS
T ss_pred hCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHHHHHHHHHHHHh--chhHHHH-HHHHHHHHHHH
Confidence 32110 0 00 00 0 00 001222 4699999999999873 3332222 2222 333
Q ss_pred HHhcCchHHHHHHHHHHHHhhc
Q psy2712 366 LLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 366 lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
.+.|+...||..-+..|...+.
T Consensus 382 ~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 382 RFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp TTSCSSSHHHHHHHHHHHHHHH
T ss_pred HcCCCchHHHHHHHHHHHHHHH
Confidence 3468899999877776665554
No 4
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=96.91 E-value=0.34 Score=54.64 Aligned_cols=314 Identities=10% Similarity=0.025 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHhh-CC-CCCCCchHHHHHHHhcccC--CccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 87 ERGLKLLVMLSYV-YP-CHFMQQSSIQALLKMLTIE--DEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 87 ~~a~eLL~~IS~~-~P-~lFk~~e~~~~L~~ll~~~--d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
..+...+..|+.. +| ..+.. .+..|...+..+ ++.+.+.+|++|..+.+.-. ++.+......+.+.+......
T Consensus 107 ~~~~~~l~~i~~~~~~~~~w~~--ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~-~~~~~~~~~~ll~~l~~~l~~ 183 (876)
T 1qgr_A 107 SSASQCVAGIACAEIPVNQWPE--LIPQLVANVTNPNSTEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRK 183 (876)
T ss_dssp CHHHHHHHHHHHHHGGGTCCTT--HHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSC-HHHHGGGHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhhCcccccHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcC-HhhHHhHHHHHHHHHHHhhcC
Confidence 5566666666654 45 55555 899999988776 77788889999998874211 222222334567777777666
Q ss_pred C--CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCch
Q psy2712 163 G--TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFP 239 (602)
Q Consensus 163 G--tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe 239 (602)
+ ++..-+.|+++|..+...-+.. ... ......++..+...+...++. -...+..|+.++...|..|.
T Consensus 184 ~~~~~~vr~~a~~~l~~~~~~~~~~--------~~~--~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~ 253 (876)
T 1qgr_A 184 EEPSNNVKLAATNALLNSLEFTKAN--------FDK--ESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYME 253 (876)
T ss_dssp TCSCHHHHHHHHHHHHHHGGGCHHH--------HTS--HHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHH--------HHh--HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHH
Confidence 6 5666678899985543211100 000 011123555554444333332 34578899999999999988
Q ss_pred hhHH-HHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhccc------------------ch-
Q psy2712 240 AVIK-NTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLK------------------AH- 299 (602)
Q Consensus 240 ~~~~-~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~------------------~~- 299 (602)
.++. . +..++++.+ .+ .++ ..+..|+.++...+.... ..
T Consensus 254 ~~~~~~-l~~~~~~~~--~~----------------~~~--~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 312 (876)
T 1qgr_A 254 TYMGPA-LFAITIEAM--KS----------------DID--EVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSK 312 (876)
T ss_dssp HHHTTT-HHHHHHHHH--TC----------------SSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCC
T ss_pred HHHHHH-HHHHHHHHh--cC----------------Cch--HHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhH
Confidence 8776 5 555554422 10 011 224555555544443210 00
Q ss_pred h---hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHH
Q psy2712 300 K---ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVRE 376 (602)
Q Consensus 300 ~---~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~ 376 (602)
. ...+.++..+..++....+ .. ..+-...|-+|+.++-.|+..- .+.+-+..+..+...++|+.+.||.
T Consensus 313 ~~~~~~~~~ll~~ll~~l~~~~~---d~---~~~~~~~r~~a~~~l~~l~~~~--~~~~~~~~l~~l~~~l~~~~~~~r~ 384 (876)
T 1qgr_A 313 FYAKGALQYLVPILTQTLTKQDE---ND---DDDDWNPCKAAGVCLMLLATCC--EDDIVPHVLPFIKEHIKNPDWRYRD 384 (876)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCS---SC---CTTCCCHHHHHHHHHHHHHHHH--GGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHhHHHHHHhhcccc---cc---cccccHHHHHHHHHHHHHHHHC--cHhhHHHHHHHHHHHccCCChHHHH
Confidence 0 1124444444444432211 00 0011367889999998888753 3445555666666778899999999
Q ss_pred HHHHHHHHhhccCCCCCCCC---hhhHHHHhhccccchHHhHHHHHHH----HHcC-----CCCCchhHHHHHhhhccC
Q psy2712 377 IFANKLHKGLGRNLPNKCLP---LDFMGFYALGGLEEEKKLKMSTEKA----LAQL-----PNFLPDFMLVFAIPVLTH 443 (602)
Q Consensus 377 ~Fl~KL~k~L~~~~~~~~Lp---~rf~~l~fL~A~EPd~elk~~v~~~----~~~~-----~~~~pEy~L~rLIhLLAH 443 (602)
.-+.-|...... .++..+. ...+..++-.-.+|+..+|...... .... ...+.+.+++.++..|.+
T Consensus 385 ~a~~~l~~i~~~-~~~~~~~~~~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~l~~~l~~l~~~l~~ 462 (876)
T 1qgr_A 385 AAVMAFGCILEG-PEPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSA 462 (876)
T ss_dssp HHHHHHHHTSSS-SCHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHHHHHHHHHHHHHHcC
Confidence 988777554422 1000011 1123333334478888888773332 2221 123447788889988865
No 5
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=96.72 E-value=0.16 Score=58.04 Aligned_cols=323 Identities=15% Similarity=0.098 Sum_probs=178.2
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhccccc----------------ccccc----cCcHHHHHH
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVM----------------PHRLT----GNAIPILIS 63 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~s----------------pl~~N----~ssI~~Li~ 63 (602)
.|++..||..+..+|...|++|+. ..-++++.++.+.+.+.... |-.+. ...+..++.
T Consensus 100 ~~~~~~vr~~~a~~i~~ia~~~~~--~~wp~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~ 177 (852)
T 4fdd_A 100 GDSSPLIRATVGILITTIASKGEL--QNWPDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIP 177 (852)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHTTT--TTCTTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHhcCc--cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHH
Confidence 377889999999999999999854 23577888776664432210 00000 011333333
Q ss_pred HhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCC
Q psy2712 64 YVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPL 141 (602)
Q Consensus 64 ~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~ 141 (602)
.+..+.. + ........|.+-|..+....|..+.. .+.++.|...+.++++.+-..++++|..+++. .
T Consensus 178 ~l~~~l~-~--------~~~~vR~~A~~aL~~~~~~~~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~--~ 246 (852)
T 4fdd_A 178 KFLQFFK-H--------SSPKIRSHAVACVNQFIISRTQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEV--R 246 (852)
T ss_dssp HHTTTTT-C--------SSHHHHHHHHHHHHTTTTTTCHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHH--C
T ss_pred HHHHHhc-C--------CCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHh--C
Confidence 3322211 0 01123334555554433333322222 34666666666677777777789998888732 2
Q ss_pred chhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCC-------
Q psy2712 142 GEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLT------- 214 (602)
Q Consensus 142 ~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~------- 214 (602)
++.+......+.+.+........+.-...|+.++..+....... .....+...++..++..+.
T Consensus 247 ~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~----------~~~~~~~~~l~p~ll~~l~~~e~d~~ 316 (852)
T 4fdd_A 247 MDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICK----------DVLVRHLPKLIPVLVNGMKYSDIDII 316 (852)
T ss_dssp HHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHH----------HHHTTTHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHH----------HHHHHHHHHHHHHHHHHcCCcHhHHH
Confidence 22221122346666767666667777788888886655432100 0012244455555544441
Q ss_pred ---CC----C------CC---cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHH
Q psy2712 215 ---PD----S------PN---YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNE 278 (602)
Q Consensus 215 ---~~----s------~~---l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e 278 (602)
.+ . +. -.++..+|+.++...|+. ....+..++.. .+. + .+|
T Consensus 317 ~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~~----~~~~l~~~l~~-~l~-~--------~~~--------- 373 (852)
T 4fdd_A 317 LLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRDE----LLPHILPLLKE-LLF-H--------HEW--------- 373 (852)
T ss_dssp HHHC------------CCCCHHHHHHHHHHHHHHHHGGG----GHHHHHHHHHH-HHT-C--------SSH---------
T ss_pred HhcCCcccccccccccccchHHHHHHHHHHHHHHhccHH----HHHHHHHHHHH-Hhc-C--------CCH---------
Confidence 11 0 11 224677888888776642 22224455433 331 1 224
Q ss_pred HHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhccc--CcCCcC
Q psy2712 279 VRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQK--GVGDQY 355 (602)
Q Consensus 279 ~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~--~~~~~I 355 (602)
+.|..|+.++.+...+..... .....++..|..++. + + ..+.|-+|+.++=++|..- .....+
T Consensus 374 -~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~---d-------~---~~~Vr~~a~~~l~~l~~~~~~~~~~~~ 439 (852)
T 4fdd_A 374 -VVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS---D-------K---KALVRSITCWTLSRYAHWVVSQPPDTY 439 (852)
T ss_dssp -HHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT---C-------S---SHHHHHHHHHHHHHTHHHHHHSCTTTT
T ss_pred -HHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC---C-------C---CHHHHHHHHHHHHHHHHHhccchHHHH
Confidence 457788888888776664321 344555555555541 1 1 2578899999999998742 112233
Q ss_pred CHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 356 SPEQFYNLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 356 ~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
-...+..|...++|+.+.||..=..-|....
T Consensus 440 ~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~ 470 (852)
T 4fdd_A 440 LKPLMTELLKRILDSNKRVQEAACSAFATLE 470 (852)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence 3456677777888999999998655554443
No 6
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=96.69 E-value=0.053 Score=58.07 Aligned_cols=275 Identities=10% Similarity=0.061 Sum_probs=145.5
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
.-...|.+.|..+....|.-...+..+.-+..+...+++.+-..+.+++..+..+ .++ .....+.+.|..++...
T Consensus 102 ~vR~~a~~~L~~l~~~~~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~--~~~---~~~~~l~~~l~~l~~d~ 176 (588)
T 1b3u_A 102 VVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR--VSS---AVKAELRQYFRNLCSDD 176 (588)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT--SCH---HHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHh--cCH---HHHHHHHHHHHHHhCCC
Confidence 4566788888888887774110011223333333344444444455666655522 222 13456888999999888
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhH
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVI 242 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~ 242 (602)
+|.--+.|+.+|..+...-+. ..+...++..+..-+..+++. -..++.+|+.++...|.. ..
T Consensus 177 ~~~VR~~a~~~l~~l~~~~~~--------------~~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~---~~ 239 (588)
T 1b3u_A 177 TPMVRRAAASKLGEFAKVLEL--------------DNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQE---DL 239 (588)
T ss_dssp CHHHHHHHHHHHHHHHHTSCH--------------HHHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHH---HH
T ss_pred CHHHHHHHHHHHHHHHHHhcH--------------HhHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCHH---HH
Confidence 887777888888554433210 233345555554444333322 235688899998887641 11
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccC
Q psy2712 243 KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQ 322 (602)
Q Consensus 243 ~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~ 322 (602)
...+..++ ..++ .+.+| ..|..+++.+.........+ .....++..|..++. +.
T Consensus 240 ~~~~~~~l-~~~~---------~d~~~----------~vR~~a~~~l~~l~~~~~~~-~~~~~l~~~l~~~l~-d~---- 293 (588)
T 1b3u_A 240 EALVMPTL-RQAA---------EDKSW----------RVRYMVADKFTELQKAVGPE-ITKTDLVPAFQNLMK-DC---- 293 (588)
T ss_dssp HHHTHHHH-HHHH---------TCSSH----------HHHHHHHHTHHHHHHHHCHH-HHHHTHHHHHHHHHT-CS----
T ss_pred HHHHHHHH-HHHc---------cCCCH----------HHHHHHHHHHHHHHHHhCcc-cchhHHHHHHHHHhC-CC----
Confidence 11123333 2222 11234 34566777776665544322 122344555555552 11
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhhhcccCcCCc-----CCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCCh
Q psy2712 323 SDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQ-----YSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPL 397 (602)
Q Consensus 323 ~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~-----I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~ 397 (602)
-...|-+|+.++-+++.. +... +.+..+..+..+++|+.+.||+..+.-|......-. ..+...
T Consensus 294 --------~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~-~~~~~~ 362 (588)
T 1b3u_A 294 --------EAEVRAAASHKVKEFCEN--LSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-KDNTIE 362 (588)
T ss_dssp --------SHHHHHHHHHHHHHHHHT--SCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC-HHHHHH
T ss_pred --------cHHHHHHHHHHHHHHHHH--hChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-HhHHHH
Confidence 135788899998888874 2222 122334455567899999999987765544332100 000111
Q ss_pred hhHHHHhhccccchHHhHHH
Q psy2712 398 DFMGFYALGGLEEEKKLKMS 417 (602)
Q Consensus 398 rf~~l~fL~A~EPd~elk~~ 417 (602)
...+++.-...|++.++|..
T Consensus 363 ~l~p~l~~~l~d~~~~Vr~~ 382 (588)
T 1b3u_A 363 HLLPLFLAQLKDECPEVRLN 382 (588)
T ss_dssp HTHHHHHHHHTCSCHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHH
Confidence 12233333345777777765
No 7
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.67 E-value=0.93 Score=50.96 Aligned_cols=315 Identities=9% Similarity=-0.004 Sum_probs=174.1
Q ss_pred hhHHHHHHHHHHHhh-CCC-CCCCchHHHHHHHhcccC-CccchHHHHHHHHhhccCCCCchh---hhhHHhHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYV-YPC-HFMQQSSIQALLKMLTIE-DEIVAPLVFSVLSFLGKYRPLGEV---FKEEMKQLVPICQD 158 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~-~P~-lFk~~e~~~~L~~ll~~~-d~~v~e~~Lk~La~~~k~k~~~~~---~p~~~~~l~~~Lk~ 158 (602)
....+...|..|+.. +|. .+ ++.+..|++.+..+ ++.+.+.++++|..+.+. +... +......+.+.+..
T Consensus 111 vr~~~~~~l~~i~~~~~p~~~w--~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~--~~~~~~~~~~~~~~ll~~l~~ 186 (861)
T 2bpt_A 111 IANAAAQLIAAIADIELPHGAW--PELMKIMVDNTGAEQPENVKRASLLALGYMCES--ADPQSQALVSSSNNILIAIVQ 186 (861)
T ss_dssp HHHHHHHHHHHHHHHHGGGTCC--HHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHT--SSTTSSTTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCccccc--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHc--CChhhhHHHHHHHHHHHHHHH
Confidence 445566667776665 573 44 45899999998876 788888899999888742 2111 11133456666666
Q ss_pred HHhcC--CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCC
Q psy2712 159 MIEKG--TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMP 235 (602)
Q Consensus 159 ~al~G--tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP 235 (602)
..... ++.--+.|++++..+..--+.. . .. ......++..+...+...++. -...+.+|+.|+...|
T Consensus 187 ~l~~~~~~~~vr~~al~~l~~~~~~~~~~----~----~~--~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~ 256 (861)
T 2bpt_A 187 GAQSTETSKAVRLAALNALADSLIFIKNN----M----ER--EGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYY 256 (861)
T ss_dssp HHSTTCCCHHHHHHHHHHHHHHGGGCHHH----H----TS--HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHG
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHHHHHH----c----cC--hhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 65555 6666678888885543211000 0 00 011123444444434333322 3457889999999999
Q ss_pred CCchhhHH-HHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccc----------------
Q psy2712 236 NKFPAVIK-NTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKA---------------- 298 (602)
Q Consensus 236 ~~fe~~~~-~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~---------------- 298 (602)
+.|..+.. . |...+++-+ . + .+ ...+..|+.++...+.....
T Consensus 257 ~~~~~~l~~~-l~~~~~~~~--~--------------~--~~--~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~ 315 (861)
T 2bpt_A 257 TFMKPYMEQA-LYALTIATM--K--------------S--PN--DKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSY 315 (861)
T ss_dssp GGCHHHHHHT-HHHHHHHHT--T--------------C--SS--HHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCC
T ss_pred HHHHHHHHHH-HHHHHHHHH--c--------------C--Cc--HHHHHHHHHHHHHHHHHHHhhhhhhhhccCCchhhH
Confidence 98888776 5 444443321 0 0 01 23456667666554432210
Q ss_pred h--hhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHH
Q psy2712 299 H--KESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVRE 376 (602)
Q Consensus 299 ~--~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~ 376 (602)
. ......++..|...+....+- ... +....|-+|+.++-.|+.. +++.+.+..+..+...++++.+.+|+
T Consensus 316 ~~~~~~~~~il~~ll~~l~~~~~d-~~d-----~~~~~r~~a~~~L~~l~~~--~~~~~~~~l~~~l~~~l~~~~~~~r~ 387 (861)
T 2bpt_A 316 NFALSSIKDVVPNLLNLLTRQNED-PED-----DDWNVSMSAGACLQLFAQN--CGNHILEPVLEFVEQNITADNWRNRE 387 (861)
T ss_dssp CHHHHHHHHHHHHHHHHTTCCCCC--CC-----CCCHHHHHHHHHHHHHHHH--HGGGGHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc-ccc-----ccCcHHHHHHHHHHHHHHH--ccHhHHHHHHHHHHHHcCCCChhHHH
Confidence 0 012234444444444322110 000 1125788999999999984 45555565666666778899999999
Q ss_pred HHHHHHHHhhccCCCCCCCC---hhhHHHHhhccccchHHhHHHHHHHH----Hc-----CCCCCchhHHHHHhhhccC
Q psy2712 377 IFANKLHKGLGRNLPNKCLP---LDFMGFYALGGLEEEKKLKMSTEKAL----AQ-----LPNFLPDFMLVFAIPVLTH 443 (602)
Q Consensus 377 ~Fl~KL~k~L~~~~~~~~Lp---~rf~~l~fL~A~EPd~elk~~v~~~~----~~-----~~~~~pEy~L~rLIhLLAH 443 (602)
.-+.-|..... +..+..+. ...+..++=...+|++.+|......+ .. .+..+.+.++|.++..|..
T Consensus 388 ~a~~~l~~i~~-~~~~~~~~~~l~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~l~~~l~~ 465 (861)
T 2bpt_A 388 AAVMAFGSIMD-GPDKVQRTYYVHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQD 465 (861)
T ss_dssp HHHHHHHHTSS-SSCHHHHHHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCTTTTHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCCHHHHHHHHHHHHHHhcc
Confidence 87776655442 11000010 11233333345678888887643222 11 1234457788888888854
No 8
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=96.56 E-value=0.027 Score=60.84 Aligned_cols=276 Identities=15% Similarity=0.079 Sum_probs=155.3
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhcccCCccchHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTIEDEIVAPLV 128 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~~d~~v~e~~ 128 (602)
+++...|+.|+..+++. .....+.|...|..|+...|.. +.....+..|+.++...++.+...+
T Consensus 169 ~~~~g~i~~Lv~lL~~~-------------~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a 235 (530)
T 1wa5_B 169 VVDADAVPLFIQLLYTG-------------SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTA 235 (530)
T ss_dssp HHHTTCHHHHHHHHHHC-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHH
T ss_pred HHHCCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHH
Confidence 34567899999999742 2346677888888888754431 1112378889999987777788889
Q ss_pred HHHHHhhccCC-CCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH-HHHH
Q psy2712 129 FSVLSFLGKYR-PLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF-VDIL 206 (602)
Q Consensus 129 Lk~La~~~k~k-~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~Ii 206 (602)
+.+|++++... +... .. ....+++.|.++...+++.--..|+.+|..++...... ....+ ..++
T Consensus 236 ~~~L~~L~~~~~~~~~-~~-~~~~~l~~L~~lL~~~d~~v~~~a~~~L~~L~~~~~~~------------~~~~~~~~~v 301 (530)
T 1wa5_B 236 TWTLSNLCRGKKPQPD-WS-VVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEA------------IQAVIDVRIP 301 (530)
T ss_dssp HHHHHHHHCCSSSCCC-HH-HHGGGHHHHHHHTTCCCHHHHHHHHHHHHHHHSSCHHH------------HHHHHHTTCH
T ss_pred HHHHHHHhCCCCCCCc-HH-HHHhHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCHHH------------HHHHHhcCcH
Confidence 99999988553 2222 22 33467888888888888877778888886555432100 01111 1445
Q ss_pred HHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHH
Q psy2712 207 DKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEG 285 (602)
Q Consensus 207 e~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~a 285 (602)
..++.-|...++. ...++.+|+.|+...+.....-...-+...+++ +| .. . ....+..|
T Consensus 302 ~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-lL-~~--------------~----~~~vr~~A 361 (530)
T 1wa5_B 302 KRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRL-LL-SS--------------P----KENIKKEA 361 (530)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HT-TC--------------S----CHHHHHHH
T ss_pred HHHHHHHCCCChhhHHHHHHHHHHHHcCCHHHHHHHHHcchHHHHHH-HH-cC--------------C----CHHHHHHH
Confidence 5565556433322 334566666666533321111010001222222 22 11 0 12446778
Q ss_pred HHHHHHHhhcccchh-hh-HHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCc-----CCcCCHH
Q psy2712 286 MKMMARWLLGLKAHK-ES-AQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGV-----GDQYSPE 358 (602)
Q Consensus 286 LK~lvn~Ll~~~~~~-~~-a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~-----~~~I~~~ 358 (602)
+.++.|...+..... .. -..++..|..++.. ++ ..+|-.|+.++-.|+....- ...+...
T Consensus 362 ~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~~-~~------------~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~ 428 (530)
T 1wa5_B 362 CWTISNITAGNTEQIQAVIDANLIPPLVKLLEV-AE------------YKTKKEACWAISNASSGGLQRPDIIRYLVSQG 428 (530)
T ss_dssp HHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHHH-SC------------HHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CC------------HHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCC
Confidence 888888766433211 11 12344455555532 21 36788999999999874210 0011111
Q ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 359 QFYNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 359 ~f~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
-+..|..++.++.+.||..-+.-|...+.
T Consensus 429 ~l~~L~~ll~~~~~~v~~~al~aL~~l~~ 457 (530)
T 1wa5_B 429 CIKPLCDLLEIADNRIIEVTLDALENILK 457 (530)
T ss_dssp CHHHHHHHTTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 23345556667777777776666666654
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=96.56 E-value=0.2 Score=56.49 Aligned_cols=227 Identities=12% Similarity=0.112 Sum_probs=132.6
Q ss_pred HHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCc-cchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDE-IVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~-~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
..+.+.|..+....+.-|.+ +..+..+...+...++ .+-+.++.++..+++ ...+.+......+++.|.+.....
T Consensus 574 ~~~~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~--~~~~~~~~~l~~i~~~l~~~l~~~ 651 (861)
T 2bpt_A 574 SNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAA--SLGKGFEKYLETFSPYLLKALNQV 651 (861)
T ss_dssp HHHHHHHHHHHHHCGGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHH--HHGGGGHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHhccc
Confidence 45777888888888877766 3344444455544444 677777777776652 122222223345777777776555
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCC---CCCcchHHHHHHHHHHhCCCCchh
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPD---SPNYRTAIIALGHIAYNMPNKFPA 240 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~---s~~l~t~L~sLg~Ia~~aP~~fe~ 240 (602)
.+..-..|+.++..+...-+ .....++..++..+...|... .+--.+.+.+||.|++..++.|..
T Consensus 652 ~~~vr~~a~~~l~~l~~~~~------------~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~ 719 (861)
T 2bpt_A 652 DSPVSITAVGFIADISNSLE------------EDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIP 719 (861)
T ss_dssp TSHHHHHHHHHHHHHHHHTG------------GGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHH
T ss_pred cHHHHHHHHHHHHHHHHHhc------------hhccchHHHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHH
Confidence 66555567777643322111 112456777777777766432 334556899999999999998988
Q ss_pred hHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccc--hh--hhHHHHHHHHHHHHhh
Q psy2712 241 VIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKA--HK--ESAQKTFRMLNAVIVN 316 (602)
Q Consensus 241 ~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~--~~--~~a~~v~kLL~~lL~~ 316 (602)
.... +...+++-+ ......++ .+|.+ .....+..+++++...+.++.. .. .....++++|...+..
T Consensus 720 ~l~~-~l~~l~~~~-~~~~~~~d---~d~~~-----~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d 789 (861)
T 2bpt_A 720 YLND-IMALCVAAQ-NTKPENGT---LEALD-----YQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAED 789 (861)
T ss_dssp HHHH-HHHHHHHHH-TCCCSSSS---HHHHH-----HHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHC
T ss_pred HHHH-HHHHHHHHH-hcCCCCCC---hHHHH-----HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHcC
Confidence 7766 556655432 21111100 11100 0123455677777777666552 11 4667777777766521
Q ss_pred cCcccCCCCCCHHH-HHHHHHHHHHHHhhhhc
Q psy2712 317 KGDLLQSDKMSKQE-MAWMRLSAGCAMLKICE 347 (602)
Q Consensus 317 ~Gel~~~~~t~~~~-ksrLRL~Aa~~lLKLA~ 347 (602)
+ ... -..+|-+|..++=.|++
T Consensus 790 -~---------~~~~~~~vr~~a~~~l~~l~~ 811 (861)
T 2bpt_A 790 -P---------QLYSEDATSRAAVGLIGDIAA 811 (861)
T ss_dssp -H---------HHHTSHHHHHHHHHHHHHHHH
T ss_pred -c---------ccCCcHHHHHHHHHHHHHHHH
Confidence 1 001 35799999999999988
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.53 E-value=0.2 Score=55.34 Aligned_cols=209 Identities=15% Similarity=0.125 Sum_probs=114.6
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhc------ccccccc-----cccCcHH--HHHHHhhhhcC
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLD------KKVMPHR-----LTGNAIP--ILISYVDDCLN 70 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~------kk~spl~-----~N~ssI~--~Li~~v~~~~~ 70 (602)
.|+++.||.-.+.++-..+..+ ++ +.++.-|..-+-+ |++.--+ .+.+.++ .++..+...+.
T Consensus 96 ~~~n~~ir~~AL~~L~~i~~~~--~~---~~l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~~~~~~~~~l~~lL~ 170 (591)
T 2vgl_B 96 EDPNPLIRALAVRTMGCIRVDK--IT---EYLCEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLIA 170 (591)
T ss_dssp SSSSHHHHHHHHHHHHTCCSGG--GH---HHHHHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHTTS
T ss_pred CCCCHHHHHHHHHHHHcCChHH--HH---HHHHHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhcccccHHHHHHHHhC
Confidence 4678888888888777766444 43 4444433222111 1111111 1233444 35555554421
Q ss_pred CCCcccccCCCCCchhHHHHHHHHHHHhhCCCC-CCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh
Q psy2712 71 HGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH-FMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE 147 (602)
Q Consensus 71 g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~ 147 (602)
+. ...-...|...|..|....|.. +.. ...+..|+..+.+.++-.--.+|++|..++. .. +.
T Consensus 171 -d~--------d~~V~~~A~~aL~~i~~~~~~~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~---~~---~~ 235 (591)
T 2vgl_B 171 -DS--------NPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNP---KD---DR 235 (591)
T ss_dssp -CS--------CHHHHHHHHHHHHHHTTSCCSCCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCC---CS---HH
T ss_pred -CC--------ChhHHHHHHHHHHHHHhhCCCccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCC---CC---hH
Confidence 11 2245677889999999999876 333 3457777777766666544457777766652 11 22
Q ss_pred HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHH
Q psy2712 148 EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIA 226 (602)
Q Consensus 148 ~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~s 226 (602)
..+.+.+.+..+-...++.-..-|+++|..+.+.-. .++.....+...+...++.-++ ++++ -..+|.+
T Consensus 236 ~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~---------~~~~~~~~~~~~~~~~L~~L~~-~d~~vr~~aL~~ 305 (591)
T 2vgl_B 236 EAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLP---------KDSDYYNMLLKKLAPPLVTLLS-GEPEVQYVALRN 305 (591)
T ss_dssp HHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCC---------BTTBSHHHHHHHTHHHHHHHTT-SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccC---------CCHHHHHHHHHHHHHHHHHHhc-CCccHHHHHHHH
Confidence 334566666665555667777788899966543110 0001112223344444332223 3333 3447889
Q ss_pred HHHHHHhCCCCchhhH
Q psy2712 227 LGHIAYNMPNKFPAVI 242 (602)
Q Consensus 227 Lg~Ia~~aP~~fe~~~ 242 (602)
|+.|....|+.|..+.
T Consensus 306 l~~i~~~~p~~~~~~~ 321 (591)
T 2vgl_B 306 INLIVQKRPEILKQEI 321 (591)
T ss_dssp HHHHHHHCCSTTTTCT
T ss_pred HHHHHHhChHHHHHHH
Confidence 9999999999887654
No 11
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=96.50 E-value=0.026 Score=60.79 Aligned_cols=276 Identities=14% Similarity=0.102 Sum_probs=151.7
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhcc-cCCccchHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLT-IEDEIVAPL 127 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~-~~d~~v~e~ 127 (602)
++....|+.|+..+.+. .....+.|...|..|+...|.. +.....+..|+.++. ..++.+...
T Consensus 156 ~~~~g~i~~L~~lL~~~-------------~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~ 222 (528)
T 4b8j_A 156 VIDHGAVPIFVKLLGSS-------------SDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRN 222 (528)
T ss_dssp HHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHH
T ss_pred HHhCCcHHHHHHHhcCC-------------CHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHH
Confidence 34457899999988632 2346777888899998765541 111236888999984 567778888
Q ss_pred HHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhh-HHHHHH
Q psy2712 128 VFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVD-LFVDIL 206 (602)
Q Consensus 128 ~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ii 206 (602)
++.+|++++...+.+. .. .....++.|..+...+++.....|+.+|..++...... ... .-..++
T Consensus 223 a~~~L~~L~~~~~~~~-~~-~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~------------~~~~~~~g~v 288 (528)
T 4b8j_A 223 ATWTLSNFCRGKPQPS-FE-QTRPALPALARLIHSNDEEVLTDACWALSYLSDGTNDK------------IQAVIEAGVC 288 (528)
T ss_dssp HHHHHHHHHCSSSCCC-HH-HHTTHHHHHHHHTTCCCHHHHHHHHHHHHHHTSSCHHH------------HHHHHHTTCH
T ss_pred HHHHHHHHHcCCCCCc-HH-HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH------------HHHHHHcCHH
Confidence 9999999986543222 22 23567888999988999988889999996655443200 001 111345
Q ss_pred HHHhhcCCCCCC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHH
Q psy2712 207 DKVKMNLTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEG 285 (602)
Q Consensus 207 e~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~a 285 (602)
..++.-|...++ -...++.+|+.|+...+.....-...-+...+++ +|..+. ....+..|
T Consensus 289 ~~Lv~lL~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~-lL~~~~------------------~~~v~~~A 349 (528)
T 4b8j_A 289 PRLVELLLHPSPSVLIPALRTVGNIVTGDDAQTQCIIDHQALPCLLS-LLTQNL------------------KKSIKKEA 349 (528)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHH-HHHSCC------------------CHHHHHHH
T ss_pred HHHHHHHcCCChhHHHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHH-HHcCCC------------------cHHHHHHH
Confidence 566666654443 2334566677666533321111110002233322 222110 12346778
Q ss_pred HHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhccc--CcC-CcCCHHHH
Q psy2712 286 MKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQK--GVG-DQYSPEQF 360 (602)
Q Consensus 286 LK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~--~~~-~~I~~~~f 360 (602)
+.++.|...+..... . ....++..|..++.+. + ..+|..|+.++-.|+... ... ..+....+
T Consensus 350 ~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~~~-~------------~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i 416 (528)
T 4b8j_A 350 CWTISNITAGNKDQIQAVINAGIIGPLVNLLQTA-E------------FDIKKEAAWAISNATSGGSHDQIKYLVSEGCI 416 (528)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHHHS-C------------HHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCH
T ss_pred HHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHhcC-C------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCH
Confidence 888888876432211 1 1123445556666432 1 357888888888888751 000 00000112
Q ss_pred HHHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 361 YNLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 361 ~~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
..|..++.++.++||..-+.-|...+
T Consensus 417 ~~L~~lL~~~d~~v~~~al~~L~~l~ 442 (528)
T 4b8j_A 417 KPLCDLLICPDIRIVTVCLEGLENIL 442 (528)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 23444455555555555444444443
No 12
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=96.44 E-value=0.21 Score=55.25 Aligned_cols=132 Identities=12% Similarity=0.106 Sum_probs=88.7
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
+....|++-|..+...+|..|.. +++.+... ..++..+-..+|.+|+.++.. +++ ..+.+.|..|....
T Consensus 297 ~vr~~aL~~l~~i~~~~p~~~~~--~~~~~~~~-~~d~~~Ir~~al~~L~~l~~~----~nv----~~iv~~L~~~l~~~ 365 (591)
T 2vgl_B 297 EVQYVALRNINLIVQKRPEILKQ--EIKVFFVK-YNDPIYVKLEKLDIMIRLASQ----ANI----AQVLAELKEYATEV 365 (591)
T ss_dssp HHHHHHHHHHHHHHHHCCSTTTT--CTTTTSCC-TTSCHHHHHHHHHHHHHTCCS----STH----HHHHHHHHHHTTSS
T ss_pred cHHHHHHHHHHHHHHhChHHHHH--HHHhheec-cCChHHHHHHHHHHHHHHCCh----hhH----HHHHHHHHHHHhcC
Confidence 46677999999999999999988 66644211 233455666789999988832 222 34777888999888
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhH
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVI 242 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~ 242 (602)
++.-.+.|++.|..+...- ...+...++.++.-+....++ ....+.++.+|.+..|+..+.-+
T Consensus 366 d~~~r~~~v~aI~~la~~~----------------~~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~~~v 429 (591)
T 2vgl_B 366 DVDFVRKAVRAIGRCAIKV----------------EQSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYESII 429 (591)
T ss_dssp CHHHHHHHHHHHHHHHTTC----------------HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCCTTH
T ss_pred CHHHHHHHHHHHHHHHHhC----------------hhHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHCcchHHHHH
Confidence 9988888889885544332 123355555555555433333 33467889999999998765433
No 13
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=96.23 E-value=0.87 Score=54.27 Aligned_cols=257 Identities=13% Similarity=0.106 Sum_probs=147.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCc--cchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDE--IVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMI 160 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~--~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~a 160 (602)
....+..+|..+...+|..+.+ +..+..|.+.+.+..+ .+...++..+..+.+.-. ++.+......+.+.|....
T Consensus 450 vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~L~d~~~~~~v~~~a~~~l~~~~~~~~-~~~~~~~l~~llp~L~~~l 528 (1230)
T 1u6g_C 450 TRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFSLNDKSSSSNLKIDALSCLYVILCNHS-PQVFHPHVQALVPPVVACV 528 (1230)
T ss_dssp HHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHTTCSSSCHHHHHHHHHHHHHHHHSSC-GGGGHHHHTTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHchhhhHHHHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHHHhCC-HHHHHhHHHHHHHHHHHHH
Confidence 4466889999999999988876 3344444555554433 455557777776542111 2222223345777777766
Q ss_pred hcCCHHHHHHHHHHHHHhc---CCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCC--C-cchHHHHHHHHHHhC
Q psy2712 161 EKGTPKQAKQAIRCLYKNL---GDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSP--N-YRTAIIALGHIAYNM 234 (602)
Q Consensus 161 l~GtP~qAK~Avr~L~a~~---~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~--~-l~t~L~sLg~Ia~~a 234 (602)
...+++-+..|+.++..++ +... +.++.....++..++..++..|...++ . -.+++.+||.++...
T Consensus 529 ~d~~~~v~~~al~~l~~l~~~~~~~~--------~~~~~~~~~~~~~ll~~ll~~l~~~d~~~~vr~~a~~~lg~L~~~~ 600 (1230)
T 1u6g_C 529 GDPFYKITSEALLVTQQLVKVIRPLD--------QPSSFDATPYIKDLFTCTIKRLKAADIDQEVKERAISCMGQIICNL 600 (1230)
T ss_dssp TCSSHHHHHHHHHHHHHHHHHHCCSS--------SCCCCCCHHHHHHHHHHHHHHHSCSSSCHHHHHHHHHHHHHHHHHT
T ss_pred cccchHHHHHHHHHHHHHHHHhcCcc--------cccccchHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHh
Confidence 6667755555666664332 2200 011222356778888888777743222 2 335688999999999
Q ss_pred CCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh--hhHHHHHHHHHH
Q psy2712 235 PNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNA 312 (602)
Q Consensus 235 P~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~--~~a~~v~kLL~~ 312 (602)
++.+...... +...+.. .+.+. + .+..+++.+.....+....+ .....++..|..
T Consensus 601 g~~~~~~~~~-~l~~L~~-~l~~e----------~-----------~r~~~~~al~~i~~~~~~~~~~~~~~~i~~~L~~ 657 (1230)
T 1u6g_C 601 GDNLGSDLPN-TLQIFLE-RLKNE----------I-----------TRLTTVKALTLIAGSPLKIDLRPVLGEGVPILAS 657 (1230)
T ss_dssp GGGCCTHHHH-HHHHHHH-HTTSS----------S-----------HHHHHHHHHHHHTTCSSCCCCHHHHHHHHHHHHH
T ss_pred CchhhhhHHH-HHHHHHH-Hhccc----------h-----------hHHHHHHHHHHHHhCccccchHHHHHHHHHHHHH
Confidence 8888766655 4444332 22211 1 13445555554333221111 344555555554
Q ss_pred HHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHH----HHhcCchHHHHHHHHHHHHhhcc
Q psy2712 313 VIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSR----LLIDEVPEVREIFANKLHKGLGR 388 (602)
Q Consensus 313 lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~----lvqD~~~~VR~~Fl~KL~k~L~~ 388 (602)
.+.. . . ..+|..|+.++-++++. +...+..+.+..+-. ++.|+..+++..-+.-|.+.+..
T Consensus 658 ~l~~------~---~----~~~r~~a~~al~~l~~~--~~~~~~~~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~ 722 (1230)
T 1u6g_C 658 FLRK------N---Q----RALKLGTLSALDILIKN--YSDSLTAAMIDAVLDELPPLISESDMHVSQMAISFLTTLAKV 722 (1230)
T ss_dssp HTTS------C---C----HHHHHHHHHHHHHHHHH--CCTTCCHHHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTS
T ss_pred HHHh------C---C----HHHHHHHHHHHHHHHhc--ccccCCHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHh
Confidence 4421 1 1 35899999999999985 455666666554332 34578888888877777777644
No 14
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.23 E-value=0.09 Score=54.44 Aligned_cols=273 Identities=14% Similarity=0.099 Sum_probs=151.8
Q ss_pred ccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhccc-CCccchHHHH
Q psy2712 54 TGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTI-EDEIVAPLVF 129 (602)
Q Consensus 54 N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~-~d~~v~e~~L 129 (602)
....|+.|++.+++. .....+.|...|..++...|.. +.....+..|+.++.. .++.+...++
T Consensus 105 ~~~~i~~L~~lL~~~-------------~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~ 171 (450)
T 2jdq_A 105 QAGAVPIFIELLSSE-------------FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAV 171 (450)
T ss_dssp HTTHHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHH
T ss_pred hCCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHH
Confidence 356788999888632 2246677888999998876531 1112378889998884 5677888899
Q ss_pred HHHHhhccCC-CCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHH
Q psy2712 130 SVLSFLGKYR-PLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDK 208 (602)
Q Consensus 130 k~La~~~k~k-~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~ 208 (602)
.+|.+++... +... .. ....+++.|.++...+++.--..|+.+|..++...... .....-..++..
T Consensus 172 ~~L~~l~~~~~~~~~-~~-~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~i~~ 238 (450)
T 2jdq_A 172 WALSNLCRGKSPPPE-FA-KVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK-----------IQAVIDAGVCRR 238 (450)
T ss_dssp HHHHHHHCCSSSCCC-GG-GTGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHH-----------HHHHHHTTTHHH
T ss_pred HHHHHHhCCCCCCCC-HH-HHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHH-----------HHHHHHcCcHHH
Confidence 9999888543 2111 22 22457888888888888887788888885554432100 000111234555
Q ss_pred HhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHH-HHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHH
Q psy2712 209 VKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIK-NTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGM 286 (602)
Q Consensus 209 l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~-~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aL 286 (602)
++.-|...++. ...++.+|+.|+...+.....-.. . +...+++ +|..+ ....+..|+
T Consensus 239 L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~-~l~~L~~-ll~~~-------------------~~~vr~~a~ 297 (450)
T 2jdq_A 239 LVELLMHNDYKVVSPALRAVGNIVTGDDIQTQVILNCS-ALQSLLH-LLSSP-------------------KESIKKEAC 297 (450)
T ss_dssp HHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHTTT-HHHHHHH-HTTCS-------------------SHHHHHHHH
T ss_pred HHHHHCCCchhHHHHHHHHHHHHhhCChHHHHHHHHCc-cHHHHHH-HHcCC-------------------CHHHHHHHH
Confidence 55555433322 334566777766543321110000 1 2222222 22110 013467788
Q ss_pred HHHHHHhhcccchh-hhH-HHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhccc--C-cCCcCCHHHHH
Q psy2712 287 KMMARWLLGLKAHK-ESA-QKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQK--G-VGDQYSPEQFY 361 (602)
Q Consensus 287 K~lvn~Ll~~~~~~-~~a-~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~--~-~~~~I~~~~f~ 361 (602)
.++.|...+..... ... ..++..|..++.. ++ ..+|..|+.++-.|+... . ....+...-+.
T Consensus 298 ~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~-~~------------~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~ 364 (450)
T 2jdq_A 298 WTISNITAGNRAQIQTVIDANIFPALISILQT-AE------------FRTRKEAAWAITNATSGGSAEQIKYLVELGCIK 364 (450)
T ss_dssp HHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHH-SC------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhc-CC------------HHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHH
Confidence 99888876543221 111 2455555566642 11 368899999999998741 0 11111112233
Q ss_pred HHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 362 NLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 362 ~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
.|..+++++.++||..-+.-|...+
T Consensus 365 ~L~~ll~~~~~~v~~~a~~aL~~l~ 389 (450)
T 2jdq_A 365 PLCDLLTVMDSKIVQVALNGLENIL 389 (450)
T ss_dssp HHHHGGGSSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555666777777776655555444
No 15
>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A
Probab=96.03 E-value=0.14 Score=52.93 Aligned_cols=276 Identities=15% Similarity=0.102 Sum_probs=152.1
Q ss_pred cccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhC-CCCCCC--chHHHHHHHhcccCCccchHHHH
Q psy2712 53 LTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVY-PCHFMQ--QSSIQALLKMLTIEDEIVAPLVF 129 (602)
Q Consensus 53 ~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~--~e~~~~L~~ll~~~d~~v~e~~L 129 (602)
+....|+.|++.+++. . .......+...|..++... |..-.. ...+..|+.++..+++.+...++
T Consensus 146 ~~~~~i~~L~~~l~~~----~--------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~ 213 (450)
T 2jdq_A 146 LDCNILPPLLQLFSKQ----N--------RLTMTRNAVWALSNLCRGKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADAC 213 (450)
T ss_dssp HHTTCHHHHHHHTTSC----C--------CHHHHHHHHHHHHHHHCCSSSCCCGGGTGGGHHHHHHHTTCCCHHHHHHHH
T ss_pred HHCCCHHHHHHHhcCC----C--------CHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHHccCCHHHHHHHH
Confidence 4456788898888631 1 2346677888888888765 543111 44899999999887888888899
Q ss_pred HHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH-HHHHH
Q psy2712 130 SVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF-VDILD 207 (602)
Q Consensus 130 k~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~Iie 207 (602)
.+|.+++... ++.... ....+++.|.++...+++.-...|+++|..++...... ...+. ..++.
T Consensus 214 ~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~~~l~ 279 (450)
T 2jdq_A 214 WALSYLSDGP--NDKIQAVIDAGVCRRLVELLMHNDYKVVSPALRAVGNIVTGDDIQ------------TQVILNCSALQ 279 (450)
T ss_dssp HHHHHHTSSS--HHHHHHHHHTTTHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH------------HHHHHTTTHHH
T ss_pred HHHHHHHCCC--cHHHHHHHHcCcHHHHHHHHCCCchhHHHHHHHHHHHHhhCChHH------------HHHHHHCccHH
Confidence 9999988432 111111 12346778888888888888888999996554432200 01111 13566
Q ss_pred HHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHH
Q psy2712 208 KVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGM 286 (602)
Q Consensus 208 ~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aL 286 (602)
.++.-|...++. ...++.+|+.|+...+.....-...-+...+++ +|..+ ....|..|.
T Consensus 280 ~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~-~l~~~-------------------~~~v~~~a~ 339 (450)
T 2jdq_A 280 SLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALIS-ILQTA-------------------EFRTRKEAA 339 (450)
T ss_dssp HHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HHHHS-------------------CHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHhcC-------------------CHHHHHHHH
Confidence 665666543322 233466666665433222111110002222222 22110 013467788
Q ss_pred HHHHHHhhcccchh--h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcC-----CcCCH-
Q psy2712 287 KMMARWLLGLKAHK--E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVG-----DQYSP- 357 (602)
Q Consensus 287 K~lvn~Ll~~~~~~--~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~-----~~I~~- 357 (602)
.++.|.+.+..... . ....++..|..++.. ++ .++|..|..++-.+++...-. ..+.+
T Consensus 340 ~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~~-~~------------~~v~~~a~~aL~~l~~~~~~~~~~~~~~~~~~ 406 (450)
T 2jdq_A 340 WAITNATSGGSAEQIKYLVELGCIKPLCDLLTV-MD------------SKIVQVALNGLENILRLGEQEAKRNGTGINPY 406 (450)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGGS-SC------------HHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHH
T ss_pred HHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhcC-CC------------HHHHHHHHHHHHHHHHhchhhhhccccchhHH
Confidence 88888876532221 1 112344555555532 11 367888888888887643110 01111
Q ss_pred -HHH------HHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 358 -EQF------YNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 358 -~~f------~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
..| ..|-.+.+++.++||+.=+.=|.+|..
T Consensus 407 ~~~l~~~g~~~~l~~l~~~~~~~v~~~a~~~l~~~~~ 443 (450)
T 2jdq_A 407 CALIEEAYGLDKIEFLQSHENQEIYQKAFDLIEHYFG 443 (450)
T ss_dssp HHHHHHHHCHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCC
Confidence 122 234456677777888777777766664
No 16
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.89 E-value=0.3 Score=54.42 Aligned_cols=234 Identities=9% Similarity=-0.013 Sum_probs=136.9
Q ss_pred CchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhc
Q psy2712 83 GTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 83 ~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~ 162 (602)
.+....|+.-|..|...+|..|.. +...+..++.++|..+-..+|.+|+.++.. +++. .+.+.|..+...
T Consensus 327 ~~vr~~aL~~L~~i~~~~p~~~~~--~~~~i~~~l~d~d~~Ir~~alelL~~l~~~----~nv~----~iv~eL~~~l~~ 396 (618)
T 1w63_A 327 KNIRYVALTSLLKTVQTDHNAVQR--HRSTIVDCLKDLDVSIKRRAMELSFALVNG----NNIR----GMMKELLYFLDS 396 (618)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHGG--GHHHHHHGGGSSCHHHHHHHHHHHHHHCCS----SSTH----HHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHhhCHHHHHH--HHHHHHHHccCCChhHHHHHHHHHHHHccc----ccHH----HHHHHHHHHHHh
Confidence 357788999999999999999988 999999999988888888899999999842 2232 356667777777
Q ss_pred CCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhH
Q psy2712 163 GTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVI 242 (602)
Q Consensus 163 GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~ 242 (602)
.++.-...+++.|..++..-. +. ...++..+++-+... +...-...+.++.+|.+..|+....-.
T Consensus 397 ~d~e~r~~~v~~I~~la~k~~-----------~~-~~~~v~~ll~lL~~~---~~~v~~~~~~~l~~ii~~~p~l~~~~v 461 (618)
T 1w63_A 397 CEPEFKADCASGIFLAAEKYA-----------PS-KRWHIDTIMRVLTTA---GSYVRDDAVPNLIQLITNSVEMHAYTV 461 (618)
T ss_dssp CCHHHHHHHHHHHHHHHHSSC-----------CC-HHHHHHHHHHHHHHT---GGGSCSSHHHHHHHHHHHSCSTHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhC-----------cc-HHHHHHHHHHHHHhc---cchhHHHHHHHHHHHHhcChhHHHHHH
Confidence 788777777777754433210 00 123444444333211 111233477889999998997654333
Q ss_pred HHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccch------h--hhHHHHHHHHHHHH
Q psy2712 243 KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAH------K--ESAQKTFRMLNAVI 314 (602)
Q Consensus 243 ~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~------~--~~a~~v~kLL~~lL 314 (602)
.. +..++ ..+. .. +..+|. ++-++..+.-.+.+. + -.-...+++|..++
T Consensus 462 ~~-L~~~l-----~~~~-----------~~-----~~~~~~-~~wilGEy~~~i~~~~~~~~~~~~~~~~~~~~~l~~~l 518 (618)
T 1w63_A 462 QR-LYKAI-----LGDY-----------SQ-----QPLVQV-AAWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVL 518 (618)
T ss_dssp HH-HHHHH-----HHCC-----------SC-----SHHHHH-HHHHHHHHHHHHTTCCCSSSCCCCCCHHHHHHHHHHHH
T ss_pred HH-HHHHH-----hccc-----------cc-----HHHHHH-HHHHHhhhHHHhcccccccccccCCCHHHHHHHHHHHH
Confidence 22 22222 1110 00 112232 344444443221110 0 01245677777777
Q ss_pred hhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHH
Q psy2712 315 VNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIF 378 (602)
Q Consensus 315 ~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~F 378 (602)
...-+ + ...|.++-.++.|++.. +.+ ..+..-..|....+|..++||.+=
T Consensus 519 ~~~~~-------~----~~vr~~~lta~~Kl~~~--~~~-~~~~l~~~L~~~~~~~d~evrdRA 568 (618)
T 1w63_A 519 ISNMS-------T----SVTRGYALTAIMKLSTR--FTC-TVNRIKKVVSIYGSSIDVELQQRA 568 (618)
T ss_dssp HSTTC-------C----HHHHHHHHHHHHHHHTT--CSS-CHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred hccCC-------C----HHHHHHHHHHHHHHHHh--Ccc-hHHHHHHHHHHhcCCCCHHHHHHH
Confidence 54311 2 45688889999999873 222 223222234445677777887763
No 17
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=95.86 E-value=0.025 Score=53.61 Aligned_cols=206 Identities=14% Similarity=0.094 Sum_probs=122.1
Q ss_pred CcchhhHHHHHHHHHhhhhccc---------cccccchhHHHHHHHh---------------hhc-ccccccccccCcHH
Q psy2712 5 DTDENVRYEVVTAIVTTARRDF---------DIVSSSEDLLTFVKER---------------TLD-KKVMPHRLTGNAIP 59 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~---------------~~~-kk~spl~~N~ssI~ 59 (602)
+.++.+|...+.++...+..+- .++ +.|++++... ... ......++....|+
T Consensus 13 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i---~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~ 89 (252)
T 4hxt_A 13 STDSETQKEAARDLAEIASGPASAIKAIVDAGGV---EVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVE 89 (252)
T ss_dssp CSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHH---HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCH---HHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHHHHHCCCHH
Confidence 3457788888888877776552 122 2233332111 000 22223334445677
Q ss_pred HHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHHHHHHHhhc
Q psy2712 60 ILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 60 ~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~ 136 (602)
.|++.+++. .......+...|..++...|..-.. ...++.|++++..+++.+...++.+|.+++
T Consensus 90 ~l~~ll~~~-------------~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~ 156 (252)
T 4hxt_A 90 VLVKLLTST-------------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIA 156 (252)
T ss_dssp HHHHHTTCS-------------SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHcCC-------------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 777777521 2346777888899888765543221 237889999998888888888999999998
Q ss_pred cCCCCchhh-hhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC
Q psy2712 137 KYRPLGEVF-KEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP 215 (602)
Q Consensus 137 k~k~~~~~~-p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~ 215 (602)
... +... .......++.|.++...+++.--+.|+.+|..++...... .....-..++..++.-+..
T Consensus 157 ~~~--~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-----------~~~l~~~~~i~~L~~ll~~ 223 (252)
T 4hxt_A 157 SGP--DEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPTSA-----------IKAIVDAGGVEVLQKLLTS 223 (252)
T ss_dssp TSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSBHHH-----------HHHHHHTTHHHHHHHGGGC
T ss_pred cCC--HHHHHHHHHCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHH-----------HHHHHHCCCHHHHHHHHCC
Confidence 431 1111 1123457888999999999988889999996655432100 0001112345555555544
Q ss_pred CCCC-cchHHHHHHHHHHhCCCCch
Q psy2712 216 DSPN-YRTAIIALGHIAYNMPNKFP 239 (602)
Q Consensus 216 ~s~~-l~t~L~sLg~Ia~~aP~~fe 239 (602)
+++. ...++.+|+.|+...+..+.
T Consensus 224 ~~~~v~~~a~~~L~~l~~~~~~~~~ 248 (252)
T 4hxt_A 224 TDSEVQKEAQRALENIKSGGWLEHH 248 (252)
T ss_dssp SCHHHHHHHHHHHHHHHHTCBCCC-
T ss_pred CcHHHHHHHHHHHHHHHcCCCcccc
Confidence 4332 34467778888777766544
No 18
>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.86 E-value=0.027 Score=62.91 Aligned_cols=258 Identities=14% Similarity=0.145 Sum_probs=148.1
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM 188 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~ 188 (602)
.+..|.+-+.+.++.+.-.+|++|+.++ . |.....+.+.++++....+|.-=|.|+.++..++....
T Consensus 108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~--~------~~~~~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p----- 174 (618)
T 1w63_A 108 MTNCIKNDLNHSTQFVQGLALCTLGCMG--S------SEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVP----- 174 (618)
T ss_dssp HHHHHHHHHSCSSSHHHHHHHHHHHHHC--C------HHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCG-----
T ss_pred HHHHHHHhcCCCCHhHHHHHHHHHHhcC--C------HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCh-----
Confidence 4455555556678888888999999998 1 22334577888888888899888888888866554321
Q ss_pred cccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHH---HHHHhccCCccccc
Q psy2712 189 DENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKI---VKELLIKETEESYQ 264 (602)
Q Consensus 189 ~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fI---vk~lLl~~~~~~~~ 264 (602)
.....+++.+..-|...++. ..+++.+|++|+...|+. ...... +...+ ++++......++
T Consensus 175 -----------~~v~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~-~v~~l~~~L~~~~~~~~~~~-- 239 (618)
T 1w63_A 175 -----------ELMEMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRK-LVPQLVRILKNLIMSGYSPE-- 239 (618)
T ss_dssp -----------GGGGGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHT-THHHHHHHHHHHHHSCCCTT--
T ss_pred -----------HHHHHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHH-HHHHHHHHHHHHHcCCCCcc--
Confidence 11234455554445433333 344677777776655542 111112 11222 233332221111
Q ss_pred cCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhh
Q psy2712 265 YKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLK 344 (602)
Q Consensus 265 ~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLK 344 (602)
..-....++-.+ +..++++...+.. ++...++.+++|..++.+- + .+...-....+.|+.+++.
T Consensus 240 ----~~~~~~~~~~~q--~~il~~L~~l~~~---~~~~~~~~~~~L~~l~~~~-~------~~~~~~~aV~~ea~~~i~~ 303 (618)
T 1w63_A 240 ----HDVSGISDPFLQ--VRILRLLRILGRN---DDDSSEAMNDILAQVATNT-E------TSKNVGNAILYETVLTIMD 303 (618)
T ss_dssp ----TCSSSSSCHHHH--HHHHHHHHHHTTT---CHHHHHTTHHHHHHHHHTS-C------CSSTHHHHHHHHHHHHHHH
T ss_pred ----ccccCCCCChHH--HHHHHHHHHhCCC---CHHHHHHHHHHHHHHHhcc-c------cccchHHHHHHHHHHHHHh
Confidence 000001123334 4467887776543 2234566777888877432 1 1222345678899999998
Q ss_pred hhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHH
Q psy2712 345 ICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMS 417 (602)
Q Consensus 345 LA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~ 417 (602)
+...+... ..-...|..+++++.++||..-+.-|.+...... .+=.+|...++.+-.+++..+|..
T Consensus 304 l~~~~~l~----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p---~~~~~~~~~i~~~l~d~d~~Ir~~ 369 (618)
T 1w63_A 304 IKSESGLR----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDH---NAVQRHRSTIVDCLKDLDVSIKRR 369 (618)
T ss_dssp SCCCHHHH----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHH---HHHGGGHHHHHHGGGSSCHHHHHH
T ss_pred cCCCHHHH----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCH---HHHHHHHHHHHHHccCCChhHHHH
Confidence 75432110 1234456667888889999998888877775421 011345666777778888888887
No 19
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=95.80 E-value=0.15 Score=54.54 Aligned_cols=276 Identities=12% Similarity=0.090 Sum_probs=147.7
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM 188 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~ 188 (602)
.+..|..++.++++.+-+.+..+|..++. .++.. .....+.+.+..++....+..=..|+.+|..+.....
T Consensus 88 ll~~L~~l~~~~~~~vR~~a~~~L~~l~~--~~~~~--~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~~~----- 158 (588)
T 1b3u_A 88 LLPPLESLATVEETVVRDKAVESLRAISH--EHSPS--DLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVS----- 158 (588)
T ss_dssp GHHHHHHHTTSSCHHHHHHHHHHHHHHHT--TSCHH--HHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTSC-----
T ss_pred HHHHHHHHHhCchHHHHHHHHHHHHHHHH--HCCHH--HHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhcC-----
Confidence 44555555556677777888999998883 23321 1234578888888877667555566677754444322
Q ss_pred cccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCC
Q psy2712 189 DENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKK 267 (602)
Q Consensus 189 ~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~ 267 (602)
......++..+..-+...++. -..++.+||.++...+.. ..... +...++ .++ ++ .
T Consensus 159 ----------~~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~~~~~-l~~~l~-~~~-~d--------~ 215 (588)
T 1b3u_A 159 ----------SAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--NVKSE-IIPMFS-NLA-SD--------E 215 (588)
T ss_dssp ----------HHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--HHHHT-HHHHHH-HHH-TC--------S
T ss_pred ----------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHH--hHHHH-HHHHHH-HHh-cC--------C
Confidence 123344554443333333332 345688889988876641 11111 222222 122 11 1
Q ss_pred CCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhc
Q psy2712 268 DWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICE 347 (602)
Q Consensus 268 ~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~ 347 (602)
+| ..+..|++.+.......... .....++.++..++. + . . .+.|-+|+.++=.++.
T Consensus 216 ~~----------~vr~~a~~~l~~l~~~~~~~-~~~~~~~~~l~~~~~---d----~--~----~~vR~~a~~~l~~l~~ 271 (588)
T 1b3u_A 216 QD----------SVRLLAVEACVNIAQLLPQE-DLEALVMPTLRQAAE---D----K--S----WRVRYMVADKFTELQK 271 (588)
T ss_dssp CH----------HHHTTHHHHHHHHHHHSCHH-HHHHHTHHHHHHHHT---C----S--S----HHHHHHHHHTHHHHHH
T ss_pred cH----------HHHHHHHHHHHHHHHhCCHH-HHHHHHHHHHHHHcc---C----C--C----HHHHHHHHHHHHHHHH
Confidence 11 23456677776655444322 223445555555541 1 0 1 4689999999988887
Q ss_pred ccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCC----CCChhhHHHHhhccccchHHhHHHHHHHHH
Q psy2712 348 QKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNK----CLPLDFMGFYALGGLEEEKKLKMSTEKALA 423 (602)
Q Consensus 348 ~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~----~Lp~rf~~l~fL~A~EPd~elk~~v~~~~~ 423 (602)
.-.- +.+.+..+..+..+++|+.++||..-..-|......-. +. .....+++.+.-...+|+...|.....++.
T Consensus 272 ~~~~-~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~-~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~ 349 (588)
T 1b3u_A 272 AVGP-EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS-ADCRENVIMSQILPCIKELVSDANQHVKSALASVIM 349 (588)
T ss_dssp HHCH-HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC-TTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGG
T ss_pred HhCc-ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC-hhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 4211 11222344556678899999999987776665554311 00 011223444444456777777766433322
Q ss_pred cCC-----CCCchhHHHHHhhhcc
Q psy2712 424 QLP-----NFLPDFMLVFAIPVLT 442 (602)
Q Consensus 424 ~~~-----~~~pEy~L~rLIhLLA 442 (602)
... ....++++|.++.+|.
T Consensus 350 ~l~~~~~~~~~~~~l~p~l~~~l~ 373 (588)
T 1b3u_A 350 GLSPILGKDNTIEHLLPLFLAQLK 373 (588)
T ss_dssp GGHHHHCHHHHHHHTHHHHHHHHT
T ss_pred HHHHHhhHhHHHHHHHHHHHHHhC
Confidence 111 1112456777777775
No 20
>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A
Probab=95.41 E-value=0.19 Score=54.10 Aligned_cols=277 Identities=14% Similarity=0.065 Sum_probs=150.4
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhC-CCCCCC--chHHHHHHHhcccCCccchHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVY-PCHFMQ--QSSIQALLKMLTIEDEIVAPLV 128 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~--~e~~~~L~~ll~~~d~~v~e~~ 128 (602)
++....|+.|+..+.+. .......+...|..++... |..-.. ...+..|+.++..+++.+...+
T Consensus 211 ~~~~~~l~~L~~ll~~~-------------~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a 277 (530)
T 1wa5_B 211 VLQCNAMEPILGLFNSN-------------KPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDA 277 (530)
T ss_dssp HHHTTCHHHHHHGGGSC-------------CHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHH
T ss_pred HHHcCcHHHHHHHhccC-------------CHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHH
Confidence 34457788999888631 2235566788888888665 432211 4588899999988788788889
Q ss_pred HHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhh-HHHHHH
Q psy2712 129 FSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVD-LFVDIL 206 (602)
Q Consensus 129 Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~-~~~~Ii 206 (602)
+.+|.+++... ++.... ....+++.|..+...+++.--+.|+++|..++...... ... .-..++
T Consensus 278 ~~~L~~L~~~~--~~~~~~~~~~~~v~~Lv~lL~~~~~~v~~~a~~~L~~l~~~~~~~------------~~~~~~~~~l 343 (530)
T 1wa5_B 278 CWAISYLSDGP--QEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQ------------TQVVINAGVL 343 (530)
T ss_dssp HHHHHHHHSSC--HHHHHHHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHH------------HHHHHHTTHH
T ss_pred HHHHHHHhCCC--HHHHHHHHhcCcHHHHHHHHCCCChhhHHHHHHHHHHHHcCCHHH------------HHHHHHcchH
Confidence 99999888321 111111 12246788888888888988889999996555432200 011 112455
Q ss_pred HHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHH
Q psy2712 207 DKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEG 285 (602)
Q Consensus 207 e~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~a 285 (602)
..++.-|...++. ...++.+|+.|+...|.....-...-+...+++ +| ... ....|..|
T Consensus 344 ~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~-lL-~~~------------------~~~v~~~a 403 (530)
T 1wa5_B 344 PALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVK-LL-EVA------------------EYKTKKEA 403 (530)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHH-HH-HHS------------------CHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HH-hcC------------------CHHHHHHH
Confidence 5665556543322 233456666665533321111010001222222 22 110 11346778
Q ss_pred HHHHHHHhhcccc--hh--h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcC-----CcC
Q psy2712 286 MKMMARWLLGLKA--HK--E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVG-----DQY 355 (602)
Q Consensus 286 LK~lvn~Ll~~~~--~~--~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~-----~~I 355 (602)
+.++.|.+.+... .. . ....++..|..++... -..+|..|..++-.|++...-. ..+
T Consensus 404 ~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~~~-------------~~~v~~~al~aL~~l~~~~~~~~~~~~~~~ 470 (530)
T 1wa5_B 404 CWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIA-------------DNRIIEVTLDALENILKMGEADKEARGLNI 470 (530)
T ss_dssp HHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTTTC-------------CHHHHHHHHHHHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHhCC-------------CHHHHHHHHHHHHHHHHhhhhhhhcccccc
Confidence 8888888775432 11 1 1122444455554221 1357778888888887642110 011
Q ss_pred CH--------HHHHHHHHHHhcCchHHHHHHHHHHHHhhcc
Q psy2712 356 SP--------EQFYNLSRLLIDEVPEVREIFANKLHKGLGR 388 (602)
Q Consensus 356 ~~--------~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~ 388 (602)
.+ .-+..|-.+.+++.+.||+.=..=|.+|...
T Consensus 471 ~~~~~~l~~~g~~~~L~~L~~~~~~~v~~~a~~il~~~~~~ 511 (530)
T 1wa5_B 471 NENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIETYFGE 511 (530)
T ss_dssp CHHHHHHHHTTHHHHHHGGGGCSCHHHHHHHHHHHHHHSSS
T ss_pred cHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHCCc
Confidence 11 0122444566677777777666666666543
No 21
>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A
Probab=95.38 E-value=0.081 Score=56.85 Aligned_cols=272 Identities=10% Similarity=0.052 Sum_probs=147.9
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLV 128 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~ 128 (602)
++....||.|++.+... . .......|...|..|+...|..-.. ...+..|+.++...++.+.+.+
T Consensus 113 ~~~~g~v~~Lv~lL~~~---~---------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a 180 (528)
T 4b8j_A 113 VIQSGVVPRFVQFLTRE---D---------FPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLGSSSDDVREQA 180 (528)
T ss_dssp HHHTTCHHHHHHHHTCT---T---------CHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred HHHCCCHHHHHHHhCCC---C---------CHHHHHHHHHHHHHHhCCCHHHHHHHHhCCcHHHHHHHhcCCCHHHHHHH
Confidence 34557899999988632 0 1245667888888888755532211 2378889999988788888889
Q ss_pred HHHHHhhccCCCCchhhhh-HHhHHHHHHHHHH-hcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHH
Q psy2712 129 FSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMI-EKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDIL 206 (602)
Q Consensus 129 Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~a-l~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Ii 206 (602)
+.+|.+++... +..-.. .....++.|..+. ..+++...+.|+.+|..++..... +.......++
T Consensus 181 ~~aL~~l~~~~--~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~------------~~~~~~~~~l 246 (528)
T 4b8j_A 181 VWALGNVAGDS--PKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQ------------PSFEQTRPAL 246 (528)
T ss_dssp HHHHHHHHHTC--HHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSC------------CCHHHHTTHH
T ss_pred HHHHHHHhCCC--hhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCC------------CcHHHHHHHH
Confidence 99999887321 110000 1122455666666 455788888899999666554310 1123445667
Q ss_pred HHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHH----HHHHHHHHHhccCCccccccCCCCccCCCCCHHHHH
Q psy2712 207 DKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNT----VSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRC 281 (602)
Q Consensus 207 e~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~i----I~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~a 281 (602)
..++.-|..+++. ...++.+|+.|+...+ .....+ +...+++ +|..+ ....
T Consensus 247 ~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~----~~~~~~~~~g~v~~Lv~-lL~~~-------------------~~~v 302 (528)
T 4b8j_A 247 PALARLIHSNDEEVLTDACWALSYLSDGTN----DKIQAVIEAGVCPRLVE-LLLHP-------------------SPSV 302 (528)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHTSSCH----HHHHHHHHTTCHHHHHH-HTTCS-------------------CHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHcCCH----HHHHHHHHcCHHHHHHH-HHcCC-------------------ChhH
Confidence 7776666544433 3334566666653322 111111 1223332 22111 1134
Q ss_pred HHHHHHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccC--cCCcCCH
Q psy2712 282 KMEGMKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKG--VGDQYSP 357 (602)
Q Consensus 282 Ki~aLK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~--~~~~I~~ 357 (602)
+..|++++.|.+.+..... . .-..++..|..++.+.. ...+|-.|+.++-.|+.... ....+..
T Consensus 303 ~~~a~~~L~nl~~~~~~~~~~~~~~~~l~~L~~lL~~~~------------~~~v~~~A~~~L~nl~~~~~~~~~~~~~~ 370 (528)
T 4b8j_A 303 LIPALRTVGNIVTGDDAQTQCIIDHQALPCLLSLLTQNL------------KKSIKKEACWTISNITAGNKDQIQAVINA 370 (528)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHTTTHHHHHHHHHHSCC------------CHHHHHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhhhHHHHHHHHcCCC------------cHHHHHHHHHHHHHHHCCCHHHHHHHHHC
Confidence 6788999999876543221 1 11334566666664320 14577788888888886210 0001111
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHh
Q psy2712 358 EQFYNLSRLLIDEVPEVREIFANKLHKG 385 (602)
Q Consensus 358 ~~f~~La~lvqD~~~~VR~~Fl~KL~k~ 385 (602)
..+..|..+++++.+.||+.-+.-|...
T Consensus 371 ~~i~~L~~lL~~~~~~v~~~a~~aL~nl 398 (528)
T 4b8j_A 371 GIIGPLVNLLQTAEFDIKKEAAWAISNA 398 (528)
T ss_dssp TCHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1123344455555666665544444333
No 22
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=95.18 E-value=0.057 Score=50.25 Aligned_cols=143 Identities=13% Similarity=0.148 Sum_probs=99.5
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCC
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPG 83 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~ 83 (602)
++.|+.||...+.++...+..+ ++....+ +....|+.|++.++.. ..
T Consensus 22 ~s~~~~v~~~a~~~L~~l~~~~-------~~~~~~i-------------~~~g~i~~L~~lL~~~-------------~~ 68 (210)
T 4db6_A 22 NSPDQQELQSALRKLSQIASGG-------NEQIQAV-------------IDAGALPALVQLLSSP-------------NE 68 (210)
T ss_dssp TCSCHHHHHHHHHHHHHHHTSC-------HHHHHHH-------------HHTTHHHHHHHHTTCS-------------CH
T ss_pred cCCCHHHHHHHHHHHHHHHcCC-------HHHHHHH-------------HHcCCHHHHHHHHcCC-------------CH
Confidence 4578899999999998888654 2222222 3346788999888632 22
Q ss_pred chhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHH
Q psy2712 84 TAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDM 159 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~ 159 (602)
...+.|...|..++...|.. +.....++.|+.++...++.+.+.++.+|.+++... ++.... .....++.|.++
T Consensus 69 ~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~l 146 (210)
T 4db6_A 69 QILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQL 146 (210)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCC--HHHHHHHHHcCcHHHHHHH
Confidence 45667888888887655432 111236888999998888888888999999998421 221111 234578899999
Q ss_pred HhcCCHHHHHHHHHHHHHhcCC
Q psy2712 160 IEKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 160 al~GtP~qAK~Avr~L~a~~~~ 181 (602)
...+++..-+.|+.+|..++..
T Consensus 147 l~~~~~~v~~~a~~aL~~l~~~ 168 (210)
T 4db6_A 147 LSSPNEQILQEALWALSNIASG 168 (210)
T ss_dssp TTCSCHHHHHHHHHHHHHHHTS
T ss_pred HcCCCHHHHHHHHHHHHHHHcC
Confidence 9999999899999999666554
No 23
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=94.61 E-value=0.48 Score=53.40 Aligned_cols=256 Identities=12% Similarity=0.071 Sum_probs=137.2
Q ss_pred HHHHHHHHHHHhhCC-CCCCC--chHHHHHHHhcccCC--ccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 87 ERGLKLLVMLSYVYP-CHFMQ--QSSIQALLKMLTIED--EIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P-~lFk~--~e~~~~L~~ll~~~d--~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
..+...|..+....+ .-|.. +..+..|...+.... +.+-+.++.++..+++. ....+......+.+.|.....
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~--~~~~~~~~~~~~~~~l~~~l~ 659 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEV--LGGEFLKYMEAFKPFLGIGLK 659 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHH--HGGGGGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChhhhhHHHHHHHHHHHHHHHhccCCCCccHHHHHHHHHHHHH--HHhhHHHHHHHHHHHHHHHHc
Confidence 345677777777776 55555 345556666665432 35666688887766631 122222223456677766665
Q ss_pred cC-CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCC--C-CCcchHHHHHHHHHHhCCCC
Q psy2712 162 KG-TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPD--S-PNYRTAIIALGHIAYNMPNK 237 (602)
Q Consensus 162 ~G-tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~--s-~~l~t~L~sLg~Ia~~aP~~ 237 (602)
.. .+.--+.|+.++..+...-+ .....++.+++..+...|... + +-....+.++|.|+...+..
T Consensus 660 ~~~~~~vr~~a~~~l~~l~~~~~------------~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~ 727 (876)
T 1qgr_A 660 NYAEYQVCLAAVGLVGDLCRALQ------------SNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGE 727 (876)
T ss_dssp HCTTHHHHHHHHHHHHHHHHHHG------------GGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGG
T ss_pred CcchHHHHHHHHHHHHHHHHHHH------------HhhhhhHHHHHHHHHHHhCCccccHHhhHHHHHHHHHHHHHhchh
Confidence 54 56555557777643322111 112456778888887777542 2 23456799999999988888
Q ss_pred chhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccch--------h---hhHHHH
Q psy2712 238 FPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAH--------K---ESAQKT 306 (602)
Q Consensus 238 fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~--------~---~~a~~v 306 (602)
|...... +...+.+ .+...... ++.+|.+. ....|..+++++...+.+.... . .....+
T Consensus 728 ~~~~l~~-~~~~l~~-~~~~~~~~---~d~~~~~~-----~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i 797 (876)
T 1qgr_A 728 FKKYLEV-VLNTLQQ-ASQAQVDK---SDYDMVDY-----LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFI 797 (876)
T ss_dssp GGGGHHH-HHHHHHH-HHTCCCCT---TCHHHHHH-----HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHH
T ss_pred HHHHHHH-HHHHHHH-HHhccCCC---CChHHHHH-----HHHHHHHHHHHHHHHHHHHccCcccccchHHHHHHHHHHH
Confidence 8877655 5555543 22111100 01111110 1133444566666555544321 1 234455
Q ss_pred HHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCC-cC----CHHHHHHHHH-HHhcCchHHHHHHH
Q psy2712 307 FRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGD-QY----SPEQFYNLSR-LLIDEVPEVREIFA 379 (602)
Q Consensus 307 ~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~-~I----~~~~f~~La~-lvqD~~~~VR~~Fl 379 (602)
+.++..+... +.. -..+|-.|+.++=+|++.- +. .+ .......+.. ..+|+.+.||..=.
T Consensus 798 ~~~l~~~~~~--------~~~---~~~vr~~a~~~l~~l~~~~--~~~~~~~~~~~~~i~~ll~~~l~~~~~~~r~~a~ 863 (876)
T 1qgr_A 798 LSFIDHIAGD--------EDH---TDGVVACAAGLIGDLCTAF--GKDVLKLVEARPMIHELLTEGRRSKTNKAKTLAR 863 (876)
T ss_dssp HHHHHHHHTC--------SCC---CHHHHHHHHHHHHHHHHHH--CTHHHHHHHTSHHHHHHHHHHHHCSCHHHHHHHH
T ss_pred HHHHHHHhcC--------CCC---CHHHHHHHHHHHHHHHHHh--CcHHHHHHHhcHHHHHHHHHHhhcCCHhHHHHHH
Confidence 5444443311 100 1356889999999998853 33 22 2223344444 66799999998643
No 24
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=94.56 E-value=0.49 Score=54.34 Aligned_cols=135 Identities=13% Similarity=0.035 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC-
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG- 163 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G- 163 (602)
....+.++|..+... .+- ...+..|+.++..+++.+-+.++.+|.++++.......+. .....++.|.++-..+
T Consensus 131 ~r~~a~~~l~~~~~~--~i~--~g~ip~Lv~lL~~~d~~vr~~A~~~L~~L~~~~~~~~~i~-~~~~~i~~Lv~~L~~~~ 205 (780)
T 2z6g_A 131 LKHAVVNLINYQDDA--ELA--TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTN 205 (780)
T ss_dssp HHHHHHHHHHHHHHH--HHH--HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTSHHHHHHHT-TCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhhhHH--HHH--hCCHHHHHHHHCCCCHHHHHHHHHHHHHHhCCChhHHHHH-hccChHHHHHHHHcCCC
Confidence 444566666655332 221 3488999999988788888889999999984311011111 0123556666555555
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCC-CcchHHHHHHHHHHhCCC
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSP-NYRTAIIALGHIAYNMPN 236 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~ 236 (602)
++..-+.|+.+|..++...+.. ....-...+..++.-|..+++ -...++.+|+.|+...+.
T Consensus 206 d~~vr~~Aa~aL~~Ls~~~~~~------------~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~ 267 (780)
T 2z6g_A 206 DVETARCTSGTLHNLSHHREGL------------LAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQEG 267 (780)
T ss_dssp CHHHHHHHHHHHHHHHTSHHHH------------HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHHHhCCchhH------------HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCChh
Confidence 7888889999996655543200 011112456666666654443 244567778888876554
No 25
>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A
Probab=94.56 E-value=4.8 Score=41.24 Aligned_cols=260 Identities=13% Similarity=0.071 Sum_probs=135.6
Q ss_pred chhHHHHHHHHHHHhhC-CCCCCC--chHHHHHHHhcccC--CccchHHHHHHHHhhccCCCCchhhhh--HHhHHHHHH
Q psy2712 84 TAGERGLKLLVMLSYVY-PCHFMQ--QSSIQALLKMLTIE--DEIVAPLVFSVLSFLGKYRPLGEVFKE--EMKQLVPIC 156 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~-P~lFk~--~e~~~~L~~ll~~~--d~~v~e~~Lk~La~~~k~k~~~~~~p~--~~~~l~~~L 156 (602)
...+.+...|..+...+ |..+.. +..+..+...+.++ ++.|-..+++++..+..+ +.+..+. ....+.+.|
T Consensus 145 ~~r~~al~~l~~l~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~--~~~~~~~~~~~~~l~~~l 222 (462)
T 1ibr_B 145 HMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF--TKANFDKESERHFIMQVV 222 (462)
T ss_dssp HHHHHHHHHHHHHHHHSCGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTT--THHHHTSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCchhhHhHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHH--HHHhhhhhHHHHHHHHHH
Confidence 35677899999998876 777766 22334444444444 455556688888876532 1111110 123357777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHH-HHHHHHhhcCCCCCCC-cchHHHHHHHHHHhC
Q psy2712 157 QDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFV-DILDKVKMNLTPDSPN-YRTAIIALGHIAYNM 234 (602)
Q Consensus 157 k~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~-~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~a 234 (602)
.+....+.+.-.+.|+++|..+...... ....++. .++..+...+...++. -...+..++.++...
T Consensus 223 ~~~~~~~~~~vr~~~~~~l~~l~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~~~v~~~a~~~l~~~~~~~ 290 (462)
T 1ibr_B 223 CEATQCPDTRVRVAALQNLVKIMSLYYQ------------YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEE 290 (462)
T ss_dssp HHHTTCSSHHHHHHHHHHHHHHHHHCGG------------GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCCCHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHH
Confidence 7776666777777888888554432210 0112233 4444443333222222 233455555555542
Q ss_pred ---------------C------CCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHh
Q psy2712 235 ---------------P------NKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWL 293 (602)
Q Consensus 235 ---------------P------~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~L 293 (602)
| ..+...... +...+++. | ...+.+ .++.+|. .+..|..++....
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-l~p~l~~~-l-~~~d~d-~~~~~~~----------~r~~a~~~L~~l~ 356 (462)
T 1ibr_B 291 MDLAIEASEAAEQGRPPEHTSKFYAKGALQY-LVPILTQT-L-TKQDEN-DDDDDWN----------PCKAAGVCLMLLA 356 (462)
T ss_dssp HHHHHHHCCTTCSSSCSSCCCCCHHHHHHHH-HHHHHHHH-T-TCCCSS-CCTTCCS----------HHHHHHHHHHHHH
T ss_pred HHHHHhcccccccCCCccchhHHHHHHHhhh-ccHHHHHH-H-Hhcccc-cccccch----------HHHHHHHHHHHHH
Confidence 0 011112222 22333322 2 211111 1113341 1334444444433
Q ss_pred hcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccC---cCCcCCHHHHHHHHHHHhcC
Q psy2712 294 LGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKG---VGDQYSPEQFYNLSRLLIDE 370 (602)
Q Consensus 294 l~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~---~~~~I~~~~f~~La~lvqD~ 370 (602)
....+ .....++..+...+.+ + ..+.|-+|..++=.++.... +...+ +..+..+...++|+
T Consensus 357 ~~~~~--~~~~~~~~~l~~~l~~----------~---~~~~r~aal~~l~~l~~~~~~~~~~~~l-~~~~~~l~~~l~d~ 420 (462)
T 1ibr_B 357 TCCED--DIVPHVLPFIKEHIKN----------P---DWRYRDAAVMAFGCILEGPEPSQLKPLV-IQAMPTLIELMKDP 420 (462)
T ss_dssp HHTTT--THHHHHHHHHHHHTTC----------S---SHHHHHHHHHHHHHTSSSSCTTTTCTTT-TTHHHHHHHGGGCS
T ss_pred HhccH--HHHHHHHHHHHHHhcC----------C---ChHHHHHHHHHHHHHhcCCcHHHHHHHH-HHHHHHHHHHhcCC
Confidence 33331 2345556555555521 1 15788899999888887432 23333 45777788889999
Q ss_pred chHHHHHHHHHHHHhhc
Q psy2712 371 VPEVREIFANKLHKGLG 387 (602)
Q Consensus 371 ~~~VR~~Fl~KL~k~L~ 387 (602)
.+.||..-+.-|.++..
T Consensus 421 ~~~Vr~~a~~~l~~~~~ 437 (462)
T 1ibr_B 421 SVVVRDTAAWTVGRICE 437 (462)
T ss_dssp CHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999998777766654
No 26
>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}
Probab=94.44 E-value=0.34 Score=45.65 Aligned_cols=233 Identities=16% Similarity=0.107 Sum_probs=131.2
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEV 187 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~ 187 (602)
.++.|++++..+++.+...++++|..++... ++.... .....++.|.++...+++.--..|+.+|..++.+....
T Consensus 3 ~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~-- 78 (252)
T 4hxt_A 3 DVEKLVKLLTSTDSETQKEAARDLAEIASGP--ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEA-- 78 (252)
T ss_dssp HHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH--
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC--cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHH--
Confidence 6788999998777777777999999887432 111111 22357888999999999988889999996665542211
Q ss_pred ccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccC
Q psy2712 188 MDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK 266 (602)
Q Consensus 188 ~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~ 266 (602)
+-...-...+..++.-|..+++. ...++.+|+.++...|+.-..-...-+...+++ +|..+
T Consensus 79 ---------~~~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~-~l~~~-------- 140 (252)
T 4hxt_A 79 ---------IKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVK-LLTST-------- 140 (252)
T ss_dssp ---------HHHHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHH-HTTCS--------
T ss_pred ---------HHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH-HHcCC--------
Confidence 00011113566666666543322 333455566655433321111110002233332 22110
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh--hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhh
Q psy2712 267 KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLK 344 (602)
Q Consensus 267 ~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~--~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLK 344 (602)
....+..|+.++.|.+....... -.....+..|..++.+ ++ ..+|..|..++-.
T Consensus 141 -----------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~-~~------------~~v~~~a~~~L~~ 196 (252)
T 4hxt_A 141 -----------DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTS-TD------------SEVQKEAARALAN 196 (252)
T ss_dssp -----------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC-SC------------HHHHHHHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHcCCHHHHHHHHHCcCHHHHHHHHCC-CC------------HHHHHHHHHHHHH
Confidence 12357889999999876543221 1123355556666632 11 3788899999999
Q ss_pred hhccc-CcC-CcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 345 ICEQK-GVG-DQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 345 LA~~~-~~~-~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
||... ... ..+...-+..|..+++++.+.||+.=+.-|.....
T Consensus 197 l~~~~~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~ 241 (252)
T 4hxt_A 197 IASGPTSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALENIKS 241 (252)
T ss_dssp HTTSBHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHHHHHc
Confidence 98721 111 11122234566677788888888877666665554
No 27
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=94.37 E-value=0.094 Score=52.68 Aligned_cols=134 Identities=16% Similarity=0.215 Sum_probs=92.3
Q ss_pred HHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHH
Q psy2712 14 VVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLL 93 (602)
Q Consensus 14 v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL 93 (602)
|+.++.++.++-=+++ .+...+-+ .|.+|....+.-+..|...++ +. +......|..+|
T Consensus 116 l~~aL~dlik~~~~il--~~eaae~L------gklkv~~~~~~V~~~l~sLl~-----Sk--------d~~vK~agl~~L 174 (265)
T 3b2a_A 116 AAKTLVSLLESPDDMM--RIETIDVL------SKLQPLEDSKLVRTYINELVV-----SP--------DLYTKVAGFCLF 174 (265)
T ss_dssp HHHHHHHHTTSCCHHH--HHHHHHHH------HHCCBSCCCHHHHHHHHHHHT-----CS--------SHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCchH--HHHHHHHh------CcCCcccchHHHHHHHHHHHh-----CC--------ChhHHHHHHHHH
Confidence 4455555555443333 23333333 123555544444455555542 12 445778899999
Q ss_pred HHHHhhC--CCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHH-hcCCHHHHHH
Q psy2712 94 VMLSYVY--PCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMI-EKGTPKQAKQ 170 (602)
Q Consensus 94 ~~IS~~~--P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~a-l~GtP~qAK~ 170 (602)
..||... |.++.+ .++++.+++..+|+.+++.+|-++-.+..+ |++++.-.....+....+++| ++|.|.-+--
T Consensus 175 ~eia~~S~D~~i~~~--I~~eI~elL~~eD~~l~e~aLd~Le~ils~-pi~~~~~~~~~~~~~~v~~l~~~~~~~~~~~k 251 (265)
T 3b2a_A 175 LNMLNSSADSGHLTL--ILDEIPSLLQNDNEFIVELALDVLEKALSF-PLLENVKIELLKISRIVDGLVYREGAPIIRLK 251 (265)
T ss_dssp HHHGGGCSSCCCGGG--TTTTHHHHHTCSCHHHHHHHHHHHHHHTTS-CCCSCCHHHHHHHHHHHHHGGGCSSCHHHHHH
T ss_pred HHhhcccCCHHHHHH--HHHHHHHHHcCCCHHHHHHHHHHHHHHHcC-cccHhHHHHHHHHHHHHHHHHHhcCChhHHHH
Confidence 9999866 799999 999999999988999999999999988765 666654435567888999999 9999965444
Q ss_pred H
Q psy2712 171 A 171 (602)
Q Consensus 171 A 171 (602)
|
T Consensus 252 a 252 (265)
T 3b2a_A 252 A 252 (265)
T ss_dssp H
T ss_pred H
Confidence 4
No 28
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=94.17 E-value=0.086 Score=50.41 Aligned_cols=184 Identities=12% Similarity=0.082 Sum_probs=111.0
Q ss_pred CcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCc
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGT 84 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~ 84 (602)
+.|..+|...+.++.....++ ++-.. .++....|+.|++.++.. ...
T Consensus 23 s~~~~~~~~a~~~L~~~l~~~-------~~~~~-------------~~~~~g~i~~L~~lL~~~-------------~~~ 69 (252)
T 4db8_A 23 SDDMQEQLSATRKFSQILSDG-------NEQIQ-------------AVIDAGALPALVQLLSSP-------------NEQ 69 (252)
T ss_dssp SSCSSHHHHHHHHHHHHHHHH-------HHHHH-------------HHHHTTHHHHHHHGGGCS-------------CHH
T ss_pred CCCHHHHHHHHHHHHHHHcCC-------CchHH-------------HHHHcCcHHHHHHHHcCC-------------CHH
Confidence 456677777777776544432 11111 233456789999988643 224
Q ss_pred hhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
....+...|..++...|..-.. ...++.|+.++..+++.+.+.++.+|.+++....... ........++.|.++..
T Consensus 70 v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~-~~~~~~~~i~~L~~lL~ 148 (252)
T 4db8_A 70 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI-QAVIDAGALPALVQLLS 148 (252)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH-HHHHHTTHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHH-HHHHHCCCHHHHHHHHh
Confidence 5667788888887654432111 2378889999988888888989999999984321110 11123357889999999
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHh
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYN 233 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~ 233 (602)
.+++...+.|+.+|..++...... .....-..++..++.-|..+++. ...++.+|+.|+..
T Consensus 149 ~~~~~v~~~a~~~L~~l~~~~~~~-----------~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~ 210 (252)
T 4db8_A 149 SPNEQILQEALWALSNIASGGNEQ-----------IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASG 210 (252)
T ss_dssp CSCHHHHHHHHHHHHHHTTSCHHH-----------HHHHHHTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHHHHcCChHH-----------HHHHHHCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcC
Confidence 999988899999996655433200 00011124455665556543332 23346666666643
No 29
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=94.02 E-value=1.2 Score=49.95 Aligned_cols=263 Identities=9% Similarity=0.084 Sum_probs=145.7
Q ss_pred ccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHH--hcCCHHHHHHHHHHHHHhcCCCcccccccccccCc
Q psy2712 118 TIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMI--EKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENG 195 (602)
Q Consensus 118 ~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~a--l~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~ 195 (602)
.+.++.+.-.+|++++.++ .|.+...+.+.+++.. ...+|---|.|+-|+..++......
T Consensus 121 ~~~n~~ir~lALr~L~~i~--------~~e~~~~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---------- 182 (621)
T 2vgl_A 121 ASRNPTFMGLALHCIANVG--------SREMAEAFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---------- 182 (621)
T ss_dssp HSCCHHHHHHHHHHHHHHC--------CHHHHHHHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG----------
T ss_pred CCCCHHHHHHHHHHhhccC--------CHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh----------
Confidence 3567777788999999987 2334456777888877 5667877788888876655432111
Q ss_pred cchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCC
Q psy2712 196 VRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEED 274 (602)
Q Consensus 196 ~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~ 274 (602)
... .++++.+..-|...++. ..+++.+|.+|+...|..|..-... +.+. +++++.....+.++.....+++
T Consensus 183 --~~~--~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~~~~~~~~~-~~~~-L~~ll~~~~~~~~~~~~~~~~~-- 254 (621)
T 2vgl_A 183 --VPM--GDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPEEFKTSVSL-AVSR-LSRIVTSASTDLQDYTYYFVPA-- 254 (621)
T ss_dssp --CCC--CSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHHHHTTHHHH-HHHH-HHHHHHCCSSSCSTTEETTEES--
T ss_pred --cCc--hhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChHHHHHHHHH-HHHH-HHHHHhCCCCCccchhhcCCCC--
Confidence 110 13344443445433333 5557888999999888766554433 2333 3556544211101100000111
Q ss_pred CCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCC-CHHHHHHHHHHHHHHHhhhhcccCcCC
Q psy2712 275 LPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKM-SKQEMAWMRLSAGCAMLKICEQKGVGD 353 (602)
Q Consensus 275 l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t-~~~~ksrLRL~Aa~~lLKLA~~~~~~~ 353 (602)
+-. ++..|+++..... .++.+..+++++.|..++.+-.+..+.... ......-+-+.|+.+++.+...+ +
T Consensus 255 --~w~--qi~il~ll~~~~~--~~d~~~~~~l~~~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~---~ 325 (621)
T 2vgl_A 255 --PWL--SVKLLRLLQCYPP--PEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEP---N 325 (621)
T ss_dssp --HHH--HHHHHHHGGGSSS--CSSHHHHHHHHHHHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCH---H
T ss_pred --chH--HHHHHHHHHHhCC--CCCHHHHHHHHHHHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcH---H
Confidence 112 3555676665432 122345667777777777542221110000 01112367889999999986322 1
Q ss_pred cCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccc-cchHHhHHH
Q psy2712 354 QYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGL-EEEKKLKMS 417 (602)
Q Consensus 354 ~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~-EPd~elk~~ 417 (602)
.+ ..-+..|..++..+.+++|..-+.-|.+..... |....=.+|...++-+-. +++..+|..
T Consensus 326 ~~-~~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~-~~~~~~~~~~~~i~~~L~~d~d~~Ir~~ 388 (621)
T 2vgl_A 326 LL-VRACNQLGQFLQHRETNLRYLALESMCTLASSE-FSHEAVKTHIETVINALKTERDVSVRQR 388 (621)
T ss_dssp HH-HHHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCT-TTHHHHHTTHHHHHHHHTTCCCHHHHHH
T ss_pred HH-HHHHHHHHHHhcCCCcchHHHHHHHHHHHHhcc-CcHHHHHHHHHHHHHHhccCCCHhHHHH
Confidence 11 124556667777888999999999998887653 100011244444444334 888877766
No 30
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=93.86 E-value=2.4 Score=44.62 Aligned_cols=294 Identities=12% Similarity=-0.014 Sum_probs=149.2
Q ss_pred CCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC
Q psy2712 103 HFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG-TPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 103 lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G-tP~qAK~Avr~L~a~~~~ 181 (602)
+-.+ .+..|++++..+++.+-+.++.+|.+++.........- .....++.|.++-..| ++..-+.|+++|..++.+
T Consensus 14 ~~~~--~i~~Lv~lL~~~~~~v~~~A~~~L~~l~~~~~~~~~~~-~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~ 90 (529)
T 1jdh_A 14 LATR--AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHH 90 (529)
T ss_dssp ---C--HHHHHHHHHTCSCHHHHHHHHHHHHHHHTSHHHHHHHH-TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTS
T ss_pred hhHh--hHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCccHHHHH-hCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcC
Confidence 3455 78999999988888888889999999884321100000 0113455565555556 788888999999665544
Q ss_pred CcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhH-HHHHHHHHHHHHhccCC
Q psy2712 182 SYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVI-KNTVSRKIVKELLIKET 259 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~-~~iI~~fIvk~lLl~~~ 259 (602)
.+ . +....-...+..++.-|..+++. ....+.+|+.|+...+..-..-. .. +...+++ +|..+
T Consensus 91 ~~-~-----------~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g-~i~~L~~-ll~~~- 155 (529)
T 1jdh_A 91 RE-G-----------LLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG-GLQKMVA-LLNKT- 155 (529)
T ss_dssp HH-H-----------HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHT-HHHHHHH-GGGCC-
T ss_pred ch-h-----------HHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcchHHHHHHcC-CHHHHHH-HHhcC-
Confidence 21 0 00111123555666666544432 34567788888876654311110 11 2233332 22110
Q ss_pred ccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHH
Q psy2712 260 EESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLS 337 (602)
Q Consensus 260 ~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~ 337 (602)
. ...+..+..++.++..+..+.. . .....+..|..++... + + ...+.+
T Consensus 156 --------~----------~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~-~-------~----~~~~~~ 205 (529)
T 1jdh_A 156 --------N----------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-T-------Y----EKLLWT 205 (529)
T ss_dssp --------C----------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHC-C-------C----HHHHHH
T ss_pred --------C----------HHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhC-C-------h----HHHHHH
Confidence 0 1334566777777766432211 1 1112344445555432 1 1 234556
Q ss_pred HHHHHhhhhcccCcCCcC-CHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHH
Q psy2712 338 AGCAMLKICEQKGVGDQY-SPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKM 416 (602)
Q Consensus 338 Aa~~lLKLA~~~~~~~~I-~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~ 416 (602)
|+.++-.|+..+.....+ ...-...|..+++++...||+.-+.-|...- ...++...-......+.=.-..++.+++.
T Consensus 206 a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~~~L~~l~-~~~~~~~~~~~~i~~L~~ll~~~~~~v~~ 284 (529)
T 1jdh_A 206 TSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS-DAATKQEGMEGLLGTLVQLLGSDDINVVT 284 (529)
T ss_dssp HHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHHHHHHHHH-TTCTTCSCCHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHHHHHHHHh-cCChhhHHHHhHHHHHHHHHcCCCHHHHH
Confidence 667777777655433222 1123445666777888888887655554433 22111111122333332233556667766
Q ss_pred HHHHHHHcCCCCCc--------hhHHHHHhhhccCCC
Q psy2712 417 STEKALAQLPNFLP--------DFMLVFAIPVLTHTP 445 (602)
Q Consensus 417 ~v~~~~~~~~~~~p--------Ey~L~rLIhLLAHHP 445 (602)
...+........-+ .-.++.|+.+|.|++
T Consensus 285 ~a~~~L~~L~~~~~~~~~~~~~~~~v~~L~~ll~~~~ 321 (529)
T 1jdh_A 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 321 (529)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHcCChHHHHHHHHccC
Confidence 64443322211111 235777888887654
No 31
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.85 E-value=1.5 Score=48.53 Aligned_cols=233 Identities=14% Similarity=0.029 Sum_probs=125.6
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCCCccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG-TPKQAKQAIRCLYKNLGDSYTIEV 187 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G-tP~qAK~Avr~L~a~~~~~~~~~~ 187 (602)
.+..|+.++..+++.+.+.++++|.+++........+- .....++.|.+.-..+ ++..-+.|+.+|..++...+..
T Consensus 15 ~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~~~~~~i~-~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~~~~~~-- 91 (644)
T 2z6h_A 15 AIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIM-RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGL-- 91 (644)
T ss_dssp THHHHHHHHTCSCHHHHHHHHHHHHHHHTSTTHHHHHT-TCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSHHHH--
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHHHHHCCChhHHHHH-hccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhcChhhH--
Confidence 78899999988888888889999999985422111010 0113455555555555 7877888999986555432100
Q ss_pred ccccccCccchhhHHHHHHHHHhhcCCCCCC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccC
Q psy2712 188 MDENSENGVRTVDLFVDILDKVKMNLTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK 266 (602)
Q Consensus 188 ~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~ 266 (602)
....-...+..++.-|..+++ -...++.+|+.|+...+.....-...-+...+++ +|..+
T Consensus 92 ----------~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~-lL~~~-------- 152 (644)
T 2z6h_A 92 ----------LAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVA-LLNKT-------- 152 (644)
T ss_dssp ----------HHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHH-GGGCC--------
T ss_pred ----------HHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHH-HHCcC--------
Confidence 001111355566666654432 2445677888888765433221111112333333 23211
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhh
Q psy2712 267 KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLK 344 (602)
Q Consensus 267 ~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLK 344 (602)
. .+.+..++.++.++..+..+.. . .....+..|..++.+. + + ..+|..|+.++-.
T Consensus 153 -~----------~~~~~~a~~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~~-~-------~----~~~~~~a~~~L~n 209 (644)
T 2z6h_A 153 -N----------VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTY-T-------Y----EKLLWTTSRVLKV 209 (644)
T ss_dssp -C----------HHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTTC-C-------C----HHHHHHHHHHHHH
T ss_pred -C----------HHHHHHHHHHHHHHHhcCcHHHHHHHHcCChHHHHHHHHcC-C-------h----HHHHHHHHHHHHH
Confidence 0 1345566777888776433221 1 1123344555555332 1 1 2456677777777
Q ss_pred hhcccCcCCcC-CHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 345 ICEQKGVGDQY-SPEQFYNLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 345 LA~~~~~~~~I-~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
||..+.....+ ...-+..|..+++++...||+.-+.-|...-
T Consensus 210 Ls~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~~L~nL~ 252 (644)
T 2z6h_A 210 LSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLS 252 (644)
T ss_dssp HTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHHHHHHHG
T ss_pred HhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 77655432221 1123445666777888888887666665543
No 32
>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}
Probab=93.68 E-value=0.24 Score=47.23 Aligned_cols=140 Identities=14% Similarity=0.155 Sum_probs=92.9
Q ss_pred cchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCch
Q psy2712 6 TDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTA 85 (602)
Q Consensus 6 ~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~ 85 (602)
.++.||...+.++...+..+ ++.- ..++....|+.|++.+++. ....
T Consensus 66 ~~~~v~~~a~~~L~~l~~~~-------~~~~-------------~~i~~~g~i~~L~~lL~~~-------------~~~v 112 (252)
T 4db8_A 66 PNEQILQEALWALSNIASGG-------NEQI-------------QAVIDAGALPALVQLLSSP-------------NEQI 112 (252)
T ss_dssp SCHHHHHHHHHHHHHHTTSC-------HHHH-------------HHHHHTTHHHHHHHGGGCS-------------CHHH
T ss_pred CCHHHHHHHHHHHHHHhcCC-------HHHH-------------HHHHHcCCHHHHHHHHcCC-------------CHHH
Confidence 34566666666666665432 1111 1223445788898888632 2346
Q ss_pred hHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHh
Q psy2712 86 GERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIE 161 (602)
Q Consensus 86 ~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al 161 (602)
.+.+...|..++...+.. +.....++.|++++..+++.+...++.+|.+++... ++.... .....++.|.++..
T Consensus 113 ~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~i~~L~~ll~ 190 (252)
T 4db8_A 113 LQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQIQAVIDAGALPALVQLLS 190 (252)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHGGG
T ss_pred HHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC--hHHHHHHHHCCCHHHHHHHHC
Confidence 677888888887765532 222347889999998888888888999999998431 221111 22346788888888
Q ss_pred cCCHHHHHHHHHHHHHhcC
Q psy2712 162 KGTPKQAKQAIRCLYKNLG 180 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~ 180 (602)
.+++.-.+.|+.+|..++.
T Consensus 191 ~~~~~v~~~a~~~L~~l~~ 209 (252)
T 4db8_A 191 SPNEQILQEALWALSNIAS 209 (252)
T ss_dssp CSSHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHhc
Confidence 8999888999999966553
No 33
>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A
Probab=93.61 E-value=0.28 Score=45.50 Aligned_cols=139 Identities=15% Similarity=0.139 Sum_probs=92.4
Q ss_pred CcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCc
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGT 84 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~ 84 (602)
+.++.||...+.++.+.+..+ ++.. ..+++...|+.|++.++.. ...
T Consensus 65 ~~~~~v~~~a~~~L~~l~~~~-------~~~~-------------~~i~~~g~i~~L~~lL~~~-------------~~~ 111 (210)
T 4db6_A 65 SPNEQILQEALWALSNIASGG-------NEQI-------------QAVIDAGALPALVQLLSSP-------------NEQ 111 (210)
T ss_dssp CSCHHHHHHHHHHHHHHTTSC-------HHHH-------------HHHHHTTCHHHHHHHTTCS-------------CHH
T ss_pred CCCHHHHHHHHHHHHHHhcCC-------cHHH-------------HHHHHCCCHHHHHHHHcCC-------------cHH
Confidence 345667777766666655432 2211 2234456889999998632 224
Q ss_pred hhHHHHHHHHHHHhhCCCCCC---CchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPCHFM---QQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMI 160 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk---~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~a 160 (602)
....+...|..++...|.... ....++.|+.++..+++.+.+.++.+|.+++... ++.... .....++.|.++.
T Consensus 112 v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l~~~~--~~~~~~~~~~g~i~~L~~ll 189 (210)
T 4db6_A 112 ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQ 189 (210)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC--cHHHHHHHHCCCHHHHHHHH
Confidence 566788888888876654321 1337899999998878888888999999998431 111111 2334788999999
Q ss_pred hcCCHHHHHHHHHHHHHh
Q psy2712 161 EKGTPKQAKQAIRCLYKN 178 (602)
Q Consensus 161 l~GtP~qAK~Avr~L~a~ 178 (602)
..+++.-.+.|..+|..+
T Consensus 190 ~~~~~~v~~~a~~aL~~l 207 (210)
T 4db6_A 190 SHENEKIQKEAQEALEKL 207 (210)
T ss_dssp GCSCHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHHHHH
Confidence 999998888888888443
No 34
>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A
Probab=93.55 E-value=4.3 Score=45.36 Aligned_cols=82 Identities=12% Similarity=0.055 Sum_probs=58.4
Q ss_pred chhHHHHHHHHHHHhhCC--CCCCCchHHHHHHHhcc-cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHH
Q psy2712 84 TAGERGLKLLVMLSYVYP--CHFMQQSSIQALLKMLT-IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMI 160 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P--~lFk~~e~~~~L~~ll~-~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~a 160 (602)
+....|++-|..|...+| ..|+. +...++.++. ++|+.+...+|.+|+.++. +++ -..+...|..|.
T Consensus 344 niry~aL~~l~~l~~~~~~~~~~~~--~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~~N----v~~Iv~eL~~yl 413 (621)
T 2vgl_A 344 NLRYLALESMCTLASSEFSHEAVKT--HIETVINALKTERDVSVRQRAVDLLYAMCD----RSN----AQQIVAEMLSYL 413 (621)
T ss_dssp HHHHHHHHHHHHHTTCTTTHHHHHT--THHHHHHHHTTCCCHHHHHHHHHHHHHHCC----HHH----HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccCcHHHHHH--HHHHHHHHhccCCCHhHHHHHHHHHHHHcC----hhh----HHHHHHHHHHHH
Confidence 456678888888888887 56666 8888888887 7777787778888888872 112 235677777777
Q ss_pred hcCCHHHHHHHHHHH
Q psy2712 161 EKGTPKQAKQAIRCL 175 (602)
Q Consensus 161 l~GtP~qAK~Avr~L 175 (602)
..-++.-...+++.|
T Consensus 414 ~~~d~~~~~~~v~~I 428 (621)
T 2vgl_A 414 ETADYSIREEIVLKV 428 (621)
T ss_dssp HHCCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH
Confidence 777765555566555
No 35
>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}
Probab=93.46 E-value=1.7 Score=48.23 Aligned_cols=266 Identities=13% Similarity=0.040 Sum_probs=145.4
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC---CCCCchHHHHHHHhccc-CCccchHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC---HFMQQSSIQALLKMLTI-EDEIVAPL 127 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~---lFk~~e~~~~L~~ll~~-~d~~v~e~ 127 (602)
.+....|+.|+++++.. .....+.|...|..++...+. ++..+..+..|++.+.. +++.+...
T Consensus 10 ~~~~g~i~~Lv~lL~~~-------------~~~vr~~A~~~L~~La~~~~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~ 76 (644)
T 2z6h_A 10 ELATRAIPELTKLLNDE-------------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 76 (644)
T ss_dssp --CTTTHHHHHHHHTCS-------------CHHHHHHHHHHHHHHHTSTTHHHHHTTCHHHHHHHHHHHHSCCCHHHHHH
T ss_pred hhhhchHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHCCChhHHHHHhccChHHHHHHHHhcCCCHHHHHH
Confidence 46777899999998621 224677899999999987763 23334578999998875 36667777
Q ss_pred HHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHH
Q psy2712 128 VFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILD 207 (602)
Q Consensus 128 ~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie 207 (602)
++.+|..+++.......+ .....++.|.++...+++..-++|+.+|..++...+.. +....-..++.
T Consensus 77 A~~~L~~Ls~~~~~~~~i--~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~-----------~~~v~~~g~i~ 143 (644)
T 2z6h_A 77 TAGTLHNLSHHREGLLAI--FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-----------KMAVRLAGGLQ 143 (644)
T ss_dssp HHHHHHHHTTSHHHHHHH--HTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTH-----------HHHHHHTTHHH
T ss_pred HHHHHHHHhcChhhHHHH--HHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchh-----------HHHHHHCCChH
Confidence 888888887431100111 12246788888888888988888999886554332100 00111245677
Q ss_pred HHhhcCCCCCCCcch-HHHHHHHHHHhCCCCchhhHHHH----HHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHH
Q psy2712 208 KVKMNLTPDSPNYRT-AIIALGHIAYNMPNKFPAVIKNT----VSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCK 282 (602)
Q Consensus 208 ~l~~~L~~~s~~l~t-~L~sLg~Ia~~aP~~fe~~~~~i----I~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aK 282 (602)
.++.-|..+++.+.. .+.+|+.|+...++ .-..+ ....+++ +|.... . ...+
T Consensus 144 ~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~----~~~~i~~~g~v~~Lv~-lL~~~~----------------~--~~~~ 200 (644)
T 2z6h_A 144 KMVALLNKTNVKFLAITTDCLQILAYGNQE----SKLIILASGGPQALVN-IMRTYT----------------Y--EKLL 200 (644)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCHH----HHHHHHHTTHHHHHHH-HHTTCC----------------C--HHHH
T ss_pred HHHHHHCcCCHHHHHHHHHHHHHHHhcCcH----HHHHHHHcCChHHHHH-HHHcCC----------------h--HHHH
Confidence 777777544432222 23355555542221 11111 1223333 332110 0 1234
Q ss_pred HHHHHHHHHHhhcccchhh-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHH
Q psy2712 283 MEGMKMMARWLLGLKAHKE-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFY 361 (602)
Q Consensus 283 i~aLK~lvn~Ll~~~~~~~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~ 361 (602)
..+++++.|.+..-..... .....+..|..++. .. ...+|-.|...+-.||+...-...+ ..-+.
T Consensus 201 ~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~-------~~------~~~~~~~a~~~L~nL~~~~~~~~~~-~~~i~ 266 (644)
T 2z6h_A 201 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLT-------DP------SQRLVQNCLWTLRNLSDAATKQEGM-EGLLG 266 (644)
T ss_dssp HHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTT-------CS------CHHHHHHHHHHHHHHGGGCTTCCSC-HHHHH
T ss_pred HHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHh-------cC------CHHHHHHHHHHHHHHhhcchhhhhh-hhHHH
Confidence 5567777666532211111 11123333333331 11 1456777888888888765332222 34566
Q ss_pred HHHHHHhcCchHHHHHHHH
Q psy2712 362 NLSRLLIDEVPEVREIFAN 380 (602)
Q Consensus 362 ~La~lvqD~~~~VR~~Fl~ 380 (602)
.|..++.++..+||..-..
T Consensus 267 ~Lv~lL~~~d~~v~~~a~~ 285 (644)
T 2z6h_A 267 TLVQLLGSDDINVVTCAAG 285 (644)
T ss_dssp HHHHHTTCSCHHHHHHHHH
T ss_pred HHHHHHcCCCHHHHHHHHH
Confidence 6677777777777765433
No 36
>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}
Probab=92.95 E-value=3.6 Score=47.14 Aligned_cols=241 Identities=12% Similarity=0.097 Sum_probs=129.2
Q ss_pred CcchhhHHHHHHHHHhhhhcccc--ccccc----hhHHHHHHHh-----------hhc-----ccccccccccCcHHHHH
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFD--IVSSS----EDLLTFVKER-----------TLD-----KKVMPHRLTGNAIPILI 62 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~--~~~~~----~~l~~~~~~~-----------~~~-----kk~spl~~N~ssI~~Li 62 (602)
+.|..||...++++...++.+-. .+... +.|+++++.- .+. ......++....|+.|+
T Consensus 161 ~~d~~vr~~A~~~L~~L~~~~~~~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~~g~I~~Lv 240 (780)
T 2z6g_A 161 DEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPALV 240 (780)
T ss_dssp CSCHHHHHHHHHHHHHHHTSHHHHHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCChhHHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHHcCCHHHHH
Confidence 45778999999999888864310 11111 2333333210 000 01112344456677777
Q ss_pred HHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCC---CchHHHHHHHhcccCCccchHHHHHHHHhhccCC
Q psy2712 63 SYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFM---QQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYR 139 (602)
Q Consensus 63 ~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk---~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k 139 (602)
+.++.. .......|...|..|+...+..-. ....+..|++++..++..+.+.++.+|..++.
T Consensus 241 ~lL~~~-------------~~~v~~~A~~aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~-- 305 (780)
T 2z6g_A 241 NMLGSP-------------VDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY-- 305 (780)
T ss_dssp HHTTCS-------------CHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT--
T ss_pred HHHcCC-------------CHHHHHHHHHHHHHHhCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhc--
Confidence 777532 234667788999999988765321 12378899999987776666666666665551
Q ss_pred CCchh-hhhHHhHHHHHHHHHHhcCCHHHH-HHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCC
Q psy2712 140 PLGEV-FKEEMKQLVPICQDMIEKGTPKQA-KQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDS 217 (602)
Q Consensus 140 ~~~~~-~p~~~~~l~~~Lk~~al~GtP~qA-K~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s 217 (602)
..++. ........++.|.++...+++... .+|+++|..++..... +....-..++..++.-|...+
T Consensus 306 ~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~------------~~~i~~~g~l~~Ll~lL~~~~ 373 (780)
T 2z6g_A 306 GNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSN------------KPAIVEAGGMQALGLHLTDPS 373 (780)
T ss_dssp TCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTH------------HHHHHHTTHHHHHGGGTTCSC
T ss_pred CChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHH------------HHHHHHhchHHHHHHHHcCCc
Confidence 11111 000122456777777778876433 3566666544433210 001112234566666664433
Q ss_pred C-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhc
Q psy2712 218 P-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLG 295 (602)
Q Consensus 218 ~-~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~ 295 (602)
+ .....+.+|+.|+...+.. .. ... +...+++ +|. .. + ...+..|+.++.+...+
T Consensus 374 ~~~~~~a~~~L~~L~~~~~~~-~~-~~~-~i~~Lv~-lL~-~~--------d----------~~vr~~A~~aL~~L~~~ 429 (780)
T 2z6g_A 374 QRLVQNCLWTLRNLSDAATKQ-EG-MEG-LLGTLVQ-LLG-SD--------D----------INVVTCAAGILSNLTCN 429 (780)
T ss_dssp HHHHHHHHHHHHHHHTTCTTC-SC-CHH-HHHHHHH-HTT-CS--------C----------HHHHHHHHHHHHHHTSS
T ss_pred hHHHHHHHHHHHHHhccchhh-hh-hhh-HHHHHHH-HHc-CC--------C----------HHHHHHHHHHHHHHHhC
Confidence 2 3445677888888766552 11 223 4455544 331 10 1 13456777777776554
No 37
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=92.70 E-value=7.6 Score=37.54 Aligned_cols=241 Identities=11% Similarity=-0.009 Sum_probs=131.7
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccc
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM 188 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~ 188 (602)
.++.|+..+.++++.+-..++.+|..++ . | ...+.|..+....+|..-..|+.+|.. .+...
T Consensus 24 ~i~~L~~~L~~~~~~vr~~A~~~L~~~~--~------~----~~~~~L~~~l~d~~~~vR~~A~~aL~~-l~~~~----- 85 (280)
T 1oyz_A 24 NDDELFRLLDDHNSLKRISSARVLQLRG--G------Q----DAVRLAIEFCSDKNYIRRDIGAFILGQ-IKICK----- 85 (280)
T ss_dssp CHHHHHHHTTCSSHHHHHHHHHHHHHHC--C------H----HHHHHHHHHHTCSSHHHHHHHHHHHHH-SCCCT-----
T ss_pred hHHHHHHHHHcCCHHHHHHHHHHHHccC--C------c----hHHHHHHHHHcCCCHHHHHHHHHHHHH-hcccc-----
Confidence 6788999998878777667888888776 1 1 245556666667778777788888844 44221
Q ss_pred cccccCccchhhHHHHHHHHHhhc-CCCCCC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccC
Q psy2712 189 DENSENGVRTVDLFVDILDKVKMN-LTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK 266 (602)
Q Consensus 189 ~~~~~~~~~~~~~~~~Iie~l~~~-L~~~s~-~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~ 266 (602)
..+..++..+... +...++ --...+.+||.+....|.. ... +...+++ .| ++.
T Consensus 86 -----------~~~~~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~~----~~~-~~~~L~~-~l-~d~------- 140 (280)
T 1oyz_A 86 -----------KCEDNVFNILNNMALNDKSACVRATAIESTAQRCKKNPIY----SPK-IVEQSQI-TA-FDK------- 140 (280)
T ss_dssp -----------TTHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGG----HHH-HHHHHHH-HT-TCS-------
T ss_pred -----------ccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCcc----cHH-HHHHHHH-Hh-hCC-------
Confidence 1123344433221 222222 2345678888887665422 112 2333322 22 111
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2712 267 KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKIC 346 (602)
Q Consensus 267 ~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA 346 (602)
+ ...+..|+..+.+. . ++.....+ ..++.. +. ..+|..|+.++-++.
T Consensus 141 -~----------~~vR~~a~~aL~~~----~-~~~~~~~L----~~~l~d----------~~---~~vr~~a~~aL~~~~ 187 (280)
T 1oyz_A 141 -S----------TNVRRATAFAISVI----N-DKATIPLL----INLLKD----------PN---GDVRNWAAFAININK 187 (280)
T ss_dssp -C----------HHHHHHHHHHHHTC--------CCHHHH----HHHHTC----------SS---HHHHHHHHHHHHHHT
T ss_pred -C----------HHHHHHHHHHHHhc----C-CHHHHHHH----HHHHcC----------CC---HHHHHHHHHHHHhhc
Confidence 0 12345666665542 1 11223333 334421 11 358899999987774
Q ss_pred cccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccchHHhHHHHHHHHHcCC
Q psy2712 347 EQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLP 426 (602)
Q Consensus 347 ~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd~elk~~v~~~~~~~~ 426 (602)
. -.++.+..|..+++|+.+.||..-+.-|.+.- +.+....+.=...+|+ ++...........
T Consensus 188 ~-------~~~~~~~~L~~~l~d~~~~vR~~A~~aL~~~~---------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~ 249 (280)
T 1oyz_A 188 Y-------DNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRK---------DKRVLSVLCDELKKNT--VYDDIIEAAGELG 249 (280)
T ss_dssp C-------CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHC
T ss_pred c-------CcHHHHHHHHHHhcCCCHHHHHHHHHHHHHhC---------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcC
Confidence 2 13566777888889999999998877765432 1222222222223443 4544444333222
Q ss_pred CCCchhHHHHHhhhccCCCC
Q psy2712 427 NFLPDFMLVFAIPVLTHTPA 446 (602)
Q Consensus 427 ~~~pEy~L~rLIhLLAHHPD 446 (602)
.+.++|.|+.+|..+++
T Consensus 250 ---~~~~~~~L~~~l~~~~~ 266 (280)
T 1oyz_A 250 ---DKTLLPVLDTMLYKFDD 266 (280)
T ss_dssp ---CGGGHHHHHHHHTTSSC
T ss_pred ---chhhhHHHHHHHhcCCC
Confidence 14677888888876654
No 38
>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A
Probab=92.61 E-value=1.5 Score=46.21 Aligned_cols=272 Identities=13% Similarity=0.051 Sum_probs=146.1
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC---CCCCchHHHHHHHhccc-CCccchHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC---HFMQQSSIQALLKMLTI-EDEIVAPL 127 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~---lFk~~e~~~~L~~ll~~-~d~~v~e~ 127 (602)
.+....|+.|+++++.. .....+.|...|..++...+. ++..+..+..|++++.. +++.+...
T Consensus 13 ~~~~~~i~~Lv~lL~~~-------------~~~v~~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~ 79 (529)
T 1jdh_A 13 ELATRAIPELTKLLNDE-------------DQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARC 79 (529)
T ss_dssp ----CHHHHHHHHHTCS-------------CHHHHHHHHHHHHHHHTSHHHHHHHHTCHHHHHHHHHHHHHCCCHHHHHH
T ss_pred hhhHhhHHHHHHHhCCC-------------CHHHHHHHHHHHHHHHcCCccHHHHHhCcchHHHHHHHHhcCCCHHHHHH
Confidence 35667899999988621 224667888999999875542 23334588899998874 46777777
Q ss_pred HHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHH
Q psy2712 128 VFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILD 207 (602)
Q Consensus 128 ~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie 207 (602)
++++|.++++.......+ .....++.|.++...++|..-++|+.+|..++.+.+.. +-...-...+.
T Consensus 80 a~~~L~~ls~~~~~~~~i--~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~-----------~~~i~~~g~i~ 146 (529)
T 1jdh_A 80 TAGTLHNLSHHREGLLAI--FKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGA-----------KMAVRLAGGLQ 146 (529)
T ss_dssp HHHHHHHHTTSHHHHHHH--HHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTH-----------HHHHHHHTHHH
T ss_pred HHHHHHHHHcCchhHHHH--HHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcch-----------HHHHHHcCCHH
Confidence 899999887431101111 12346888889988899988889999986554432100 00111245667
Q ss_pred HHhhcCCCCCCCcc-hHHHHHHHHHHhCCCCchhhH-HHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHH
Q psy2712 208 KVKMNLTPDSPNYR-TAIIALGHIAYNMPNKFPAVI-KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEG 285 (602)
Q Consensus 208 ~l~~~L~~~s~~l~-t~L~sLg~Ia~~aP~~fe~~~-~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~a 285 (602)
.++.-|..+++.+. ....+|+.++...++.-..-. .. ....+++ +|.... + ...+..+
T Consensus 147 ~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~-~i~~L~~-ll~~~~----------------~--~~~~~~a 206 (529)
T 1jdh_A 147 KMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASG-GPQALVN-IMRTYT----------------Y--EKLLWTT 206 (529)
T ss_dssp HHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTT-HHHHHHH-HHHHCC----------------C--HHHHHHH
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCC-CHHHHHH-HHHhCC----------------h--HHHHHHH
Confidence 77666754443222 223355555442221100000 01 1222332 232110 0 1223445
Q ss_pred HHHHHHHhhcccchhh-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCCHHHHHHHH
Q psy2712 286 MKMMARWLLGLKAHKE-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLS 364 (602)
Q Consensus 286 LK~lvn~Ll~~~~~~~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~~~~f~~La 364 (602)
.+++.|....-..... .....+..|..++.. . ...+|-.|+.++-.||+.+.-... ...-+..|.
T Consensus 207 ~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~-------~------~~~~~~~a~~~L~~l~~~~~~~~~-~~~~i~~L~ 272 (529)
T 1jdh_A 207 SRVLKVLSVCSSNKPAIVEAGGMQALGLHLTD-------P------SQRLVQNCLWTLRNLSDAATKQEG-MEGLLGTLV 272 (529)
T ss_dssp HHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS-------S------CHHHHHHHHHHHHHHHTTCTTCSC-CHHHHHHHH
T ss_pred HHHHHHHhcCcccHHHHHHCCCHHHHHHHHhC-------C------ChHHHHHHHHHHHHHhcCChhhHH-HHhHHHHHH
Confidence 6666665532111111 112234444434321 1 145677888888899886543222 234666777
Q ss_pred HHHhcCchHHHHHHHHHHH
Q psy2712 365 RLLIDEVPEVREIFANKLH 383 (602)
Q Consensus 365 ~lvqD~~~~VR~~Fl~KL~ 383 (602)
.++.++.++||..-+.-|.
T Consensus 273 ~ll~~~~~~v~~~a~~~L~ 291 (529)
T 1jdh_A 273 QLLGSDDINVVTCAAGILS 291 (529)
T ss_dssp HHTTCSCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH
Confidence 7888888898877554443
No 39
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=92.49 E-value=0.83 Score=49.50 Aligned_cols=275 Identities=14% Similarity=0.119 Sum_probs=145.5
Q ss_pred cccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCC---CchHHHHHHHhcccCCc-----
Q psy2712 51 HRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFM---QQSSIQALLKMLTIEDE----- 122 (602)
Q Consensus 51 l~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk---~~e~~~~L~~ll~~~d~----- 122 (602)
.+++.-.||.|+.++... .....+.|...|..|+...|..=. ....+..|+.++...+.
T Consensus 157 ~vv~~Gaip~Lv~LL~s~-------------~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~ 223 (529)
T 3tpo_A 157 AVVDGGAIPAFISLLASP-------------HAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLAC 223 (529)
T ss_dssp HHHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCH
T ss_pred HHHHCCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHH
Confidence 345667899999988632 234667788888899877664211 12257788888874332
Q ss_pred cchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH
Q psy2712 123 IVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF 202 (602)
Q Consensus 123 ~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (602)
.+...+..+|+.+++.+.....+. ....+++.|.++...+++..-..|+.+|..++....... + ...-
T Consensus 224 ~~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~----------~-~v~~ 291 (529)
T 3tpo_A 224 GYLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI----------E-MVVK 291 (529)
T ss_dssp HHHHHHHHHHHHHHCCCTTCCCHH-HHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHH----------H-HHHT
T ss_pred HHHHHHHHHHHHHHhcccchhhHH-HHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhH----------H-HHHh
Confidence 123345566676664432111122 234578899999999999888888888855554432100 0 0111
Q ss_pred HHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHH----HHHHHHHhccCCccccccCCCCccCCCCCH
Q psy2712 203 VDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVS----RKIVKELLIKETEESYQYKKDWVFEEDLPN 277 (602)
Q Consensus 203 ~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~----~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~ 277 (602)
..++..++.-|...++. ....+.+|+.|+...+. ....++. ..++ .+| ...
T Consensus 292 ~g~i~~Lv~lL~~~~~~v~~~a~~aL~nl~~~~~~----~~~~i~~~g~l~~L~-~LL-~~~------------------ 347 (529)
T 3tpo_A 292 KGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDE----QTQKVIDAGALAVFP-SLL-TNP------------------ 347 (529)
T ss_dssp TTCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTGGGGHH-HHT-TCS------------------
T ss_pred ccchHHHHHHhcCCChhHHHHHHHHHHHHHccchH----HHHHHhhcccHHHHH-HHH-cCC------------------
Confidence 23444554545443332 33456677776543221 1111111 1111 122 110
Q ss_pred HHHHHHHHHHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcC---
Q psy2712 278 EVRCKMEGMKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVG--- 352 (602)
Q Consensus 278 e~~aKi~aLK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~--- 352 (602)
....|..|..++.|.+.+..... . ....++..|..++.+ |+ ...|..|+.+|-.|+.....+
T Consensus 348 ~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~~-~~------------~~v~~~A~~aL~nl~~~~~~~~~~ 414 (529)
T 3tpo_A 348 KTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-AD------------FKTQKAAAWAITNYTSGGTVEQIV 414 (529)
T ss_dssp SHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHHS-SC------------HHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhcC-CC------------HHHHHHHHHHHHHHHcCCCHHHHH
Confidence 12346778888888776543321 1 122345555556532 22 246778888888887642110
Q ss_pred CcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 353 DQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 353 ~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
..+...-...|..++..+..+++..-+.-|...|.
T Consensus 415 ~l~~~g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 449 (529)
T 3tpo_A 415 YLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQ 449 (529)
T ss_dssp HHHHTTCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00011112234556666777777776666665553
No 40
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=91.84 E-value=3.1 Score=44.85 Aligned_cols=278 Identities=13% Similarity=0.112 Sum_probs=147.6
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhcccCCc-----c
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTIEDE-----I 123 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~~d~-----~ 123 (602)
+++.-.||.|++.+++. .....+.|...|..|+...|.. +.....+..|+.++...+. .
T Consensus 139 vv~~GaIp~Lv~lL~s~-------------~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~ 205 (510)
T 3ul1_B 139 VVDGGAIPAFISLLASP-------------HAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACG 205 (510)
T ss_dssp HHHTTHHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHH
T ss_pred HHHCCCHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHH
Confidence 34566899999998632 2346778888899998776642 1112367788888874432 1
Q ss_pred chHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHH
Q psy2712 124 VAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFV 203 (602)
Q Consensus 124 v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (602)
+...+..+|+..++.+.....+. ....+.+.|.++...+++..-..|+.+|..++....... + ...-.
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~-~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~~~~~----------~-~i~~~ 273 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLD-AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERI----------E-MVVKK 273 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHH-HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHH----------H-HHHTT
T ss_pred HHHHHHHHHHHHhhcccchhHHH-HHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhchhhhH----------H-HHHhc
Confidence 23345666777665432221222 234578899999999999888889999965554332100 0 01112
Q ss_pred HHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHH
Q psy2712 204 DILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCK 282 (602)
Q Consensus 204 ~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aK 282 (602)
.++..++.-|...++. ....+.+|+.|+...+ .. ...++..=.+. .-..+... +....|
T Consensus 274 g~i~~Lv~lL~~~~~~v~~~al~aL~nl~~~~~-----~~----~~~i~~~g~l~-------~L~~LL~~----~~~~v~ 333 (510)
T 3ul1_B 274 GVVPQLVKLLGATELPIVTPALRAIGNIVTGTD-----EQ----TQKVIDAGALA-------VFPSLLTN----PKTNIQ 333 (510)
T ss_dssp TCHHHHHHHHTCSCHHHHHHHHHHHHHHTTSCH-----HH----HHHHHHTTGGG-------GCC-CTTC----SSHHHH
T ss_pred ccchhhhhhhcCCChhhhhHHHHHHHHhhcCCH-----HH----HHHHhhccchH-------HHHHHhcC----CCHHHH
Confidence 2344454445443322 3345666666653221 11 11221100000 00112211 112456
Q ss_pred HHHHHHHHHHhhcccchh-h-hHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcC---CcCCH
Q psy2712 283 MEGMKMMARWLLGLKAHK-E-SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVG---DQYSP 357 (602)
Q Consensus 283 i~aLK~lvn~Ll~~~~~~-~-~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~---~~I~~ 357 (602)
..|..++.|...+..+.. . .-..++..|..++.+ |+ ...|-.|+.++-.|+...... ..+..
T Consensus 334 ~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~~-~~------------~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~ 400 (510)
T 3ul1_B 334 KEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK-AD------------FKTQKEAAWAITNYTSGGTVEQIVYLVHC 400 (510)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHS-SC------------HHHHHHHHHHHHHHHHHCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHcC-CC------------HHHHHHHHHHHHHHHccCCHHHHHHHHHC
Confidence 778888888765543322 1 122355556666633 22 246778888888888642111 01111
Q ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 358 EQFYNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 358 ~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
.-+..|..++..+..+|+...+.-|...|.
T Consensus 401 g~i~~L~~LL~~~d~~i~~~~L~aL~nil~ 430 (510)
T 3ul1_B 401 GIIEPLMNLLSAKDTKIIQVILDAISNIFQ 430 (510)
T ss_dssp TCHHHHHHGGGCSCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 122335556677777777777776666654
No 41
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.60 E-value=1.2 Score=42.65 Aligned_cols=135 Identities=12% Similarity=0.103 Sum_probs=86.0
Q ss_pred chhHHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
.....|...|..++......|.. +..+..|.+.+.+.++.|-+.+..+|..+... .+ ...+.+.+.....
T Consensus 72 ~V~~~a~~~l~~la~~l~~~~~~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~------~~--~~~ll~~l~~~l~ 143 (242)
T 2qk2_A 72 VLVAMAGKCLALLAKGLAKRFSNYASACVPSLLEKFKEKKPNVVTALREAIDAIYAS------TS--LEAQQESIVESLS 143 (242)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT------SC--HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHc------CC--HHHHHHHHHHHHc
Confidence 35567888888888887777766 33445555555566667777777877777631 11 1346777777777
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCc-chHHHHHHHHHHhCCC
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNY-RTAIIALGHIAYNMPN 236 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l-~t~L~sLg~Ia~~aP~ 236 (602)
..+|..=..++.+|..+....+ +.+....++..++..++..|+...+.. ..+..+|+.|+...+.
T Consensus 144 ~~~~~vr~~~l~~l~~~l~~~~----------~~~~~~~~l~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~ 209 (242)
T 2qk2_A 144 NKNPSVKSETALFIARALTRTQ----------PTALNKKLLKLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGD 209 (242)
T ss_dssp CSCHHHHHHHHHHHHHHHTTCC----------GGGCCHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCChHHHHHHHHHHHHHHHHcC----------CCCccHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHcCH
Confidence 7788666677777755443321 001114577888888888885444333 3457788888876654
No 42
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=91.27 E-value=2.3 Score=40.79 Aligned_cols=143 Identities=15% Similarity=0.166 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHhhCCCCCCC--chHHHHHHHhcc-cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 87 ERGLKLLVMLSYVYPCHFMQ--QSSIQALLKMLT-IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 87 ~~a~eLL~~IS~~~P~lFk~--~e~~~~L~~ll~-~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
..|..-|..+...+|.+-.+ .+.+..|...+. +.+..|...+++++..+++ .+...+......+.+.|-+.....
T Consensus 33 ~~a~~~L~~l~~~~~~~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~--~l~~~~~~~~~~ilp~ll~~l~d~ 110 (242)
T 2qk2_A 33 KESLEVLEKLLTDHPKLENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAK--GLAKRFSNYASACVPSLLEKFKEK 110 (242)
T ss_dssp HHHHHHHHHHHHHCSSBCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHGGGGHHHHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHHccCCCCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHHHcCC
Confidence 34556666666666654333 457788888884 7788888889999998873 233333334456777777777666
Q ss_pred CHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchH---HHHHHHHHHhC-CC-Cc
Q psy2712 164 TPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTA---IIALGHIAYNM-PN-KF 238 (602)
Q Consensus 164 tP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~---L~sLg~Ia~~a-P~-~f 238 (602)
.+.--..|..+|.++.... .+..+++.+...|... +.... +..|+.++..+ |+ .+
T Consensus 111 ~~~vr~~a~~aL~~~~~~~------------------~~~~ll~~l~~~l~~~--~~~vr~~~l~~l~~~l~~~~~~~~~ 170 (242)
T 2qk2_A 111 KPNVVTALREAIDAIYAST------------------SLEAQQESIVESLSNK--NPSVKSETALFIARALTRTQPTALN 170 (242)
T ss_dssp CHHHHHHHHHHHHHHHTTS------------------CHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCCGGGCC
T ss_pred CHHHHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHHHHcCCCCcc
Confidence 7754456666665554432 1356777776777543 33444 44455543333 65 45
Q ss_pred hhhHHHHHHHHHHH
Q psy2712 239 PAVIKNTVSRKIVK 252 (602)
Q Consensus 239 e~~~~~iI~~fIvk 252 (602)
...... +...+++
T Consensus 171 ~~~l~~-l~p~l~~ 183 (242)
T 2qk2_A 171 KKLLKL-LTTSLVK 183 (242)
T ss_dssp HHHHHH-HHHHHHH
T ss_pred HHHHHH-HHHHHHH
Confidence 566654 6666654
No 43
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=90.84 E-value=1.4 Score=43.50 Aligned_cols=166 Identities=8% Similarity=0.058 Sum_probs=95.8
Q ss_pred HHhhCCCCC--CC--chHHHHHHHhc-ccCCccchHHHHHHHHhhccCCCCc-hhhh-hHHhHHHHHHHHHHhcCCH---
Q psy2712 96 LSYVYPCHF--MQ--QSSIQALLKML-TIEDEIVAPLVFSVLSFLGKYRPLG-EVFK-EEMKQLVPICQDMIEKGTP--- 165 (602)
Q Consensus 96 IS~~~P~lF--k~--~e~~~~L~~ll-~~~d~~v~e~~Lk~La~~~k~k~~~-~~~p-~~~~~l~~~Lk~~al~GtP--- 165 (602)
+..-+|.+- .. .+.++.|...+ .+.+..|+..+++++..+++ .+. ..+. .....+.+.+-....+..+
T Consensus 44 ~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~--~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~ 121 (249)
T 2qk1_A 44 VLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICD--KLKTPGFSKDYVSLVFTPLLDRTKEKKPSVI 121 (249)
T ss_dssp TGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH--HHCTTTSCHHHHHHHHHHHHHGGGCCCHHHH
T ss_pred HHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH--hcccccccHHHHHHHHHHHHHHHcCCCHHHH
Confidence 444577765 33 46788888888 57788888999999998873 233 2332 2344566666666556555
Q ss_pred HHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCC---Cchhh
Q psy2712 166 KQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPN---KFPAV 241 (602)
Q Consensus 166 ~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~---~fe~~ 241 (602)
.+|.+|...++..++... ...++..+++.+...|.-+.++ -...+..|+.++..++. .|...
T Consensus 122 ~aa~~al~~i~~~~~~~~--------------~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~~~~~~~l~~~ 187 (249)
T 2qk1_A 122 EAIRKALLTICKYYDPLA--------------SSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEEKDGYSTLQRY 187 (249)
T ss_dssp HHHHHHHHHHHHHSCTTC--------------TTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCCSCSHHHHHH
T ss_pred HHHHHHHHHHHHHccccc--------------cCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCcchhHHHH
Confidence 456666666644332210 0112567788887777544322 22345566666666664 46666
Q ss_pred H-HHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccc
Q psy2712 242 I-KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKA 298 (602)
Q Consensus 242 ~-~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~ 298 (602)
. +. |+..+++ ++ |..+ -..|-.|.++|+-.+....+
T Consensus 188 l~~~-iip~l~~-~l-------------~D~~------~~VR~aA~~~l~~i~~~vG~ 224 (249)
T 2qk1_A 188 LKDE-VVPIVIQ-IV-------------NDTQ------PAIRTIGFESFAILIKIFGM 224 (249)
T ss_dssp HTTT-HHHHHHH-HH-------------TCSS------HHHHHHHHHHHHHHHHHHCS
T ss_pred HHHH-HHHHHHH-Hh-------------cCCC------HHHHHHHHHHHHHHHHHhCH
Confidence 6 66 4555543 33 1111 12356777777777655543
No 44
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=89.56 E-value=0.72 Score=47.05 Aligned_cols=194 Identities=11% Similarity=0.082 Sum_probs=118.1
Q ss_pred cchhhHHHHHHHHHhhhh--------------ccccccccchhHHHHHHHhhhcccccccccccCcHHHHHH-HhhhhcC
Q psy2712 6 TDENVRYEVVTAIVTTAR--------------RDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILIS-YVDDCLN 70 (602)
Q Consensus 6 ~~~~~r~~v~~~~~~~~~--------------~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~-~v~~~~~ 70 (602)
+||.-|+.-++.++.... ...... +.|..++ ...+ ..-.+.....+|.|+. .+...
T Consensus 24 ~d~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al---~~L~~lv--~~~d--na~~~~~~G~l~~Lv~~lL~s~-- 94 (296)
T 1xqr_A 24 RGEVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGAL---ELLADLC--ENMD--NAADFCQLSGMHLLVGRYLEAG-- 94 (296)
T ss_dssp HHHHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHH---HHHHHHH--TSHH--HHHHHHHTTHHHHHHHTTTTCS--
T ss_pred CCHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHH---HHHHHHH--hChh--hHHHHHHcCCHHHHHHHHHcCC--
Confidence 677777777777766421 011112 4444444 1122 3334456678899998 76421
Q ss_pred CCCcccccCCCCCchhHHHHHHHHHHHhhCCCC---CCCchHHHHHHHhccc-CCccchHHHHHHHHhhccCCC-Cchhh
Q psy2712 71 HGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH---FMQQSSIQALLKMLTI-EDEIVAPLVFSVLSFLGKYRP-LGEVF 145 (602)
Q Consensus 71 g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l---Fk~~e~~~~L~~ll~~-~d~~v~e~~Lk~La~~~k~k~-~~~~~ 145 (602)
.....+.|...|..|+..+|.. +-....+..|+.++.. .++.+.+.++.+|+.+++..+ ..+.+
T Consensus 95 -----------~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~ 163 (296)
T 1xqr_A 95 -----------AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 163 (296)
T ss_dssp -----------SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred -----------CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHH
Confidence 2346778999999999988853 2112378899999984 366777889999999874321 11112
Q ss_pred hhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH--HHHHHHHhhcCCCCCCCcc-h
Q psy2712 146 KEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF--VDILDKVKMNLTPDSPNYR-T 222 (602)
Q Consensus 146 p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~Iie~l~~~L~~~s~~l~-t 222 (602)
.....++.|.++...|+++--+.|+.+|..++...... ...+ ..++..++.-|..+++... .
T Consensus 164 --~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~~~~-------------~~~vv~~g~i~~Lv~LL~~~d~~v~~~ 228 (296)
T 1xqr_A 164 --LRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEH-------------KGTLCSMGMVQQLVALVRTEHSPFHEH 228 (296)
T ss_dssp --HHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGG-------------HHHHHHTTHHHHHHHHHTSCCSTHHHH
T ss_pred --HHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCChHH-------------HHHHHHcCCHHHHHHHHcCCChhHHHH
Confidence 22346788888888899977778888885443322100 1122 2456666666655554443 3
Q ss_pred HHHHHHHHHHhC
Q psy2712 223 AIIALGHIAYNM 234 (602)
Q Consensus 223 ~L~sLg~Ia~~a 234 (602)
++.+|+.|+...
T Consensus 229 al~aL~~l~~~~ 240 (296)
T 1xqr_A 229 VLGALCSLVTDF 240 (296)
T ss_dssp HHHHHHHHHTTC
T ss_pred HHHHHHHHHhCC
Confidence 588888888753
No 45
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=89.54 E-value=2.8 Score=48.74 Aligned_cols=272 Identities=14% Similarity=0.094 Sum_probs=147.5
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCC-----------CCC--------------
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCH-----------FMQ-------------- 106 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~l-----------Fk~-------------- 106 (602)
..+...||.|+++++.. .......+...|..|+..++.- |..
T Consensus 417 v~d~g~Ip~LV~LL~s~-------------d~~i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~ 483 (810)
T 3now_A 417 IEDKASIHALMDLARGG-------------NQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDF 483 (810)
T ss_dssp HHCHHHHHHHHHHHHTT-------------CGGGHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHH
T ss_pred HHccchHHHHHHHhCCC-------------ChHHHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHH
Confidence 34567788888888631 2235666888888888755311 100
Q ss_pred ----------chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHH
Q psy2712 107 ----------QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLY 176 (602)
Q Consensus 107 ----------~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~ 176 (602)
...+..|+.++...++.+-+.+..+|++++........+ ...-.++.|..+...|++..=+.|+.+|.
T Consensus 484 v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~V--v~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~ 561 (810)
T 3now_A 484 INKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKV--VQEGGVKALLRMALEGTEKGKRHATQALA 561 (810)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHH--HHTTHHHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHCCCHHHHHHHHccCCHHHHHHHHHHHH
Confidence 025677888888778888888999999998421111111 12345788888889999987788889885
Q ss_pred HhcCCCcccccccccccCccch--hhHHHHHHHHHhhcCCCCCCCc--chHHHHHHHHHHhCCCCchhhHHHHHH----H
Q psy2712 177 KNLGDSYTIEVMDENSENGVRT--VDLFVDILDKVKMNLTPDSPNY--RTAIIALGHIAYNMPNKFPAVIKNTVS----R 248 (602)
Q Consensus 177 a~~~~~~~~~~~~~~~~~~~~~--~~~~~~Iie~l~~~L~~~s~~l--~t~L~sLg~Ia~~aP~~fe~~~~~iI~----~ 248 (602)
.++..... ... .....+.+..++.-|..++... ..++.+|+-|+...++ ....++. .
T Consensus 562 nL~~~~~p-----------~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~----~~~~Ii~aG~l~ 626 (810)
T 3now_A 562 RIGITINP-----------EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNES----VRQRIIKEQGVS 626 (810)
T ss_dssp HHHHHSCH-----------HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH----HHHHHHHTTHHH
T ss_pred HHhcCCCh-----------hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHH----HHHHHHHcCCHH
Confidence 44322210 000 0011345667766665432211 1356666666654321 1111121 2
Q ss_pred HHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhH--HHHHHHHHHHHhhcCcccCCCCC
Q psy2712 249 KIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESA--QKTFRMLNAVIVNKGDLLQSDKM 326 (602)
Q Consensus 249 fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a--~~v~kLL~~lL~~~Gel~~~~~t 326 (602)
.|+. +|..+. ...+..|..++.|...+-..-.... ...++.|..++.+. +
T Consensus 627 ~Lv~-LL~s~~-------------------~~Vq~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~-d------- 678 (810)
T 3now_A 627 KIEY-YLMEDH-------------------LYLTRAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDE-D------- 678 (810)
T ss_dssp HHHH-HHHSCC-------------------TTHHHHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCS-S-------
T ss_pred HHHH-HHcCCC-------------------HHHHHHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCC-C-------
Confidence 2222 222110 1236778888888765322111222 24566666666331 1
Q ss_pred CHHHHHHHHHHHHHHHhhhhc-cc-CcCCcCC-HHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 327 SKQEMAWMRLSAGCAMLKICE-QK-GVGDQYS-PEQFYNLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 327 ~~~~ksrLRL~Aa~~lLKLA~-~~-~~~~~I~-~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
...|-.|+.++=-|+. .+ .....+. ..-+..|..+++.+..+||++-+.-|....
T Consensus 679 -----~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~s~d~~vq~~A~~aL~NL~ 736 (810)
T 3now_A 679 -----EETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIANPSPAVQHRGIVIILNMI 736 (810)
T ss_dssp -----HHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHTCSSHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 2456666666666665 11 1222333 334445666677777777776666555544
No 46
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=88.57 E-value=15 Score=33.80 Aligned_cols=189 Identities=14% Similarity=0.115 Sum_probs=111.1
Q ss_pred CCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCc
Q psy2712 104 FMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSY 183 (602)
Q Consensus 104 Fk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~ 183 (602)
..+++.++.|+..+.++++.+-..++.+|..++. + ...+.|.++...++|.--..|+++|.. .++.
T Consensus 15 ~~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~----~--------~~~~~L~~~l~~~~~~vr~~a~~aL~~-~~~~- 80 (211)
T 3ltm_A 15 RADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----E--------RAVEPLIKALKDEDAWVRRAAADALGQ-IGDE- 80 (211)
T ss_dssp -CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----G--------GGHHHHHHHTTCSCHHHHHHHHHHHHH-HCCG-
T ss_pred hcCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC----c--------cHHHHHHHHHcCCCHHHHHHHHHHHHh-hCCH-
Confidence 4557899999999998888777778888887761 1 123445555567788888889999944 4432
Q ss_pred ccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCcccc
Q psy2712 184 TIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESY 263 (602)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~ 263 (602)
..+..+++ .|. +++-.....++..++..... + ....+++ +| .+.
T Consensus 81 ----------------~~~~~L~~----~l~--~~~~~vr~~a~~aL~~~~~~-------~-~~~~L~~-~l-~d~---- 124 (211)
T 3ltm_A 81 ----------------RAVEPLIK----ALK--DEDGWVRQSAAVALGQIGDE-------R-AVEPLIK-AL-KDE---- 124 (211)
T ss_dssp ----------------GGHHHHHH----HTT--CSSHHHHHHHHHHHHHHCCG-------G-GHHHHHH-HT-TCS----
T ss_pred ----------------HHHHHHHH----HHc--CCCHHHHHHHHHHHHHhCcH-------H-HHHHHHH-HH-hCC----
Confidence 22233333 333 23333344444444444321 1 1233333 33 111
Q ss_pred ccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHh
Q psy2712 264 QYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAML 343 (602)
Q Consensus 264 ~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lL 343 (602)
....+..|+..+.+.- +...... |..++. +. . .++|..|..++-
T Consensus 125 --------------~~~vr~~a~~aL~~~~-----~~~~~~~----L~~~l~-d~--------~----~~vr~~a~~aL~ 168 (211)
T 3ltm_A 125 --------------DWFVRIAAAFALGEIG-----DERAVEP----LIKALK-DE--------D----GWVRQSAADALG 168 (211)
T ss_dssp --------------SHHHHHHHHHHHHHHC-----CGGGHHH----HHHHTT-CS--------S----HHHHHHHHHHHH
T ss_pred --------------CHHHHHHHHHHHHHcC-----CHHHHHH----HHHHHc-CC--------C----HHHHHHHHHHHH
Confidence 1134677888877751 1122233 333441 11 1 468999999998
Q ss_pred hhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Q psy2712 344 KICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGLG 387 (602)
Q Consensus 344 KLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~ 387 (602)
++.. ++....|..+++|+.+.||..=..-|.+.-.
T Consensus 169 ~~~~---------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~ 203 (211)
T 3ltm_A 169 EIGG---------ERVRAAMEKLAETGTGFARKVAVNYLETHKS 203 (211)
T ss_dssp HHCS---------HHHHHHHHHHHHHCCHHHHHHHHHHHHC---
T ss_pred HhCc---------hhHHHHHHHHHhCCCHHHHHHHHHHHHhcCC
Confidence 8843 5566678888999999999998887766543
No 47
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=88.28 E-value=3.5 Score=37.89 Aligned_cols=131 Identities=20% Similarity=0.174 Sum_probs=79.0
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHh----------hhcccccccccccCcHHHHHHHhhhhcCCCC
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKER----------TLDKKVMPHRLTGNAIPILISYVDDCLNHGN 73 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~ 73 (602)
.|+|..||...+.++...+... .+ +.|++.+.+. .+.+- -+.+.++.|++.+.+.
T Consensus 24 ~~~~~~vr~~A~~~L~~~~~~~--~~---~~L~~~l~~~~~~vr~~a~~~L~~~-----~~~~~~~~L~~~l~d~----- 88 (201)
T 3ltj_A 24 QDDSYYVRRAAAYALGKIGDER--AV---EPLIKALKDEDAWVRRAAADALGQI-----GDERAVEPLIKALKDE----- 88 (201)
T ss_dssp TCSCHHHHHHHHHHHHHHCCGG--GH---HHHHHHTTCSSHHHHHHHHHHHHHH-----CCGGGHHHHHHHTTCS-----
T ss_pred cCCCHHHHHHHHHHHHhcCChh--HH---HHHHHHHcCCCHHHHHHHHHHHHhh-----CCHHHHHHHHHHHcCC-----
Confidence 5788899999999888776532 23 4444444221 11111 1335677777766421
Q ss_pred cccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHH
Q psy2712 74 LIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLV 153 (602)
Q Consensus 74 ~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~ 153 (602)
.......+.+.|..+. +++.+..|+.++.++++.|-..++.+|..++. + ...
T Consensus 89 --------~~~vr~~a~~aL~~~~--------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~--------~----~~~ 140 (201)
T 3ltj_A 89 --------DGWVRQSAAVALGQIG--------DERAVEPLIKALKDEDWFVRIAAAFALGEIGD--------E----RAV 140 (201)
T ss_dssp --------SHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC--------G----GGH
T ss_pred --------CHHHHHHHHHHHHHhC--------cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------H----HHH
Confidence 1123445555555442 34578888888877777777777888877761 1 234
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q psy2712 154 PICQDMIEKGTPKQAKQAIRCLYK 177 (602)
Q Consensus 154 ~~Lk~~al~GtP~qAK~Avr~L~a 177 (602)
+.|..+....+|.--..|+.+|..
T Consensus 141 ~~L~~~l~d~~~~vr~~A~~aL~~ 164 (201)
T 3ltj_A 141 EPLIKALKDEDGWVRQSAADALGE 164 (201)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHH
Confidence 455566666777777778888843
No 48
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=87.86 E-value=36 Score=37.38 Aligned_cols=102 Identities=18% Similarity=0.063 Sum_probs=66.1
Q ss_pred HHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCccccccc
Q psy2712 110 IQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMD 189 (602)
Q Consensus 110 ~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~ 189 (602)
.+.+++..+- ++..-..+-|.+.++.| .||.....-+..+-++|....+.--+.|+|-|..++.+ +
T Consensus 31 y~~Il~~~kg-~~k~K~LaaQ~I~kffk------~FP~l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~------ 96 (507)
T 3u0r_A 31 YQVILDGVKG-GTKEKRLAAQFIPKFFK------HFPELADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-E------ 96 (507)
T ss_dssp HHHHHHGGGS-CHHHHHHHHHHHHHHGG------GCGGGHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-T------
T ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHh------hChhhHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-h------
Confidence 3444443332 33344445555555553 37777778888999999999998889999999777765 3
Q ss_pred ccccCccchhhHHHHHHHHHhhcCCCCC-CCcchHHHHHHHHHHhCCC
Q psy2712 190 ENSENGVRTVDLFVDILDKVKMNLTPDS-PNYRTAIIALGHIAYNMPN 236 (602)
Q Consensus 190 ~~~~~~~~~~~~~~~Iie~l~~~L~~~s-~~l~t~L~sLg~Ia~~aP~ 236 (602)
..+.+.+-|+.-|..++ ..+...=.+|.++.+.+|.
T Consensus 97 -----------~i~kiaDvL~QlLqtdd~~E~~~V~~sL~sllk~Dpk 133 (507)
T 3u0r_A 97 -----------NLPRVADILTQLLQTDDSAEFNLVNNALLSIFKMDAK 133 (507)
T ss_dssp -----------CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCHH
T ss_pred -----------hhhhHHHHHHHHHhccchHHHHHHHHHHHHHHhcChH
Confidence 24566666656665444 2455556677777777764
No 49
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=87.44 E-value=6.9 Score=39.34 Aligned_cols=203 Identities=14% Similarity=0.122 Sum_probs=125.4
Q ss_pred CchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchh-hhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcc
Q psy2712 106 QQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEV-FKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYT 184 (602)
Q Consensus 106 ~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~-~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~ 184 (602)
+++.+..|..++.++|+.+..-+|.+|-.+-| .+++. -...-.++.+.+-+++.+.+-+-|=+|+|||-.+..+-.
T Consensus 31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK--~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vp- 107 (265)
T 3b2a_A 31 DKRALFLILELAGEDDETTRLRAFVALGEILK--RADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVP- 107 (265)
T ss_dssp CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCC-
T ss_pred chhHHHHHHHHHhccchHHHHHHHHHHHHHHH--hccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCC-
Confidence 35578888999999999888878888887763 22221 111334678888889999999999999999966665532
Q ss_pred cccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccc
Q psy2712 185 IEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQ 264 (602)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~ 264 (602)
.+ ...|..+.+.+.+-+.. ++=+-.+-+.-.+...-|..+...+.+ +| -.++ .+
T Consensus 108 ----------L~--~~~y~Kl~~aL~dlik~--~~~il~~eaae~Lgklkv~~~~~~V~~----~l-~sLl-~S------ 161 (265)
T 3b2a_A 108 ----------MG--SKTFLKAAKTLVSLLES--PDDMMRIETIDVLSKLQPLEDSKLVRT----YI-NELV-VS------ 161 (265)
T ss_dssp ----------BC--HHHHHHHHHHHHHHTTS--CCHHHHHHHHHHHHHCCBSCCCHHHHH----HH-HHHH-TC------
T ss_pred ----------CC--HHHHHHHHHHHHHHhcC--CCchHHHHHHHHhCcCCcccchHHHHH----HH-HHHH-hC------
Confidence 11 46778888888666663 333334444444445455555555544 33 2344 21
Q ss_pred cCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhh
Q psy2712 265 YKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLK 344 (602)
Q Consensus 265 ~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLK 344 (602)
+.-+.|..||+++++-.-.. .+.+..+.+|+=...+|.++- .-+|=-|=-++.+
T Consensus 162 ------------kd~~vK~agl~~L~eia~~S-~D~~i~~~I~~eI~elL~~eD-------------~~l~e~aLd~Le~ 215 (265)
T 3b2a_A 162 ------------PDLYTKVAGFCLFLNMLNSS-ADSGHLTLILDEIPSLLQNDN-------------EFIVELALDVLEK 215 (265)
T ss_dssp ------------SSHHHHHHHHHHHHHHGGGC-SSCCCGGGTTTTHHHHHTCSC-------------HHHHHHHHHHHHH
T ss_pred ------------CChhHHHHHHHHHHHhhccc-CCHHHHHHHHHHHHHHHcCCC-------------HHHHHHHHHHHHH
Confidence 12467999999999975332 222456666666677775542 2233345556667
Q ss_pred hhcccCcCCcCCHHHHHHHHH
Q psy2712 345 ICEQKGVGDQYSPEQFYNLSR 365 (602)
Q Consensus 345 LA~~~~~~~~I~~~~f~~La~ 365 (602)
+...|--+ .+-+ +|..+..
T Consensus 216 ils~pi~~-~~~~-~~~~~~~ 234 (265)
T 3b2a_A 216 ALSFPLLE-NVKI-ELLKISR 234 (265)
T ss_dssp HTTSCCCS-CCHH-HHHHHHH
T ss_pred HHcCcccH-hHHH-HHHHHHH
Confidence 77766443 3333 5555543
No 50
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=86.83 E-value=1.2 Score=48.17 Aligned_cols=156 Identities=12% Similarity=0.095 Sum_probs=91.6
Q ss_pred cccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC---chHHHHHHHhcccCCccchHHHH
Q psy2712 53 LTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ---QSSIQALLKMLTIEDEIVAPLVF 129 (602)
Q Consensus 53 ~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~---~e~~~~L~~ll~~~d~~v~e~~L 129 (602)
.....++.|++++... .......+...|..|+...+..-.. ...+..|+.++...++.+...++
T Consensus 290 ~~~g~i~~Lv~lL~~~-------------~~~v~~~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~ 356 (529)
T 3tpo_A 290 VKKGVVPQLVKLLGAT-------------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEAT 356 (529)
T ss_dssp HTTTCHHHHHHHHTCS-------------CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHH
T ss_pred HhccchHHHHHHhcCC-------------ChhHHHHHHHHHHHHHccchHHHHHHhhcccHHHHHHHHcCCCHHHHHHHH
Confidence 4456678888887532 2235566777777776554432111 12556677888777777777799
Q ss_pred HHHHhhccCCCCchhhh-hHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH--HHHH
Q psy2712 130 SVLSFLGKYRPLGEVFK-EEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF--VDIL 206 (602)
Q Consensus 130 k~La~~~k~k~~~~~~p-~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~--~~Ii 206 (602)
.+|.+++... +.... -....+++.|..+...|++..-+.|+.+|..++.... . ..+ .++ ..++
T Consensus 357 ~aL~nl~~~~--~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~-~----------~~~-~~l~~~g~i 422 (529)
T 3tpo_A 357 WTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGT-V----------EQI-VYLVHCGII 422 (529)
T ss_dssp HHHHHHHTSC--HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSC-H----------HHH-HHHHHTTCH
T ss_pred HHHHHHhccc--HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCC-H----------HHH-HHHHHCcCH
Confidence 9999887432 22111 1234578899999999999877788888744332211 0 000 111 1345
Q ss_pred HHHhhcCCCCCCC-cchHHHHHHHHHHhCC
Q psy2712 207 DKVKMNLTPDSPN-YRTAIIALGHIAYNMP 235 (602)
Q Consensus 207 e~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP 235 (602)
..++.-|...++. ....|.+|..|.+.++
T Consensus 423 ~~L~~LL~~~d~~i~~~~L~aL~nil~~~~ 452 (529)
T 3tpo_A 423 EPLMNLLSAKDTKIIQVILDAISNIFQAAE 452 (529)
T ss_dssp HHHHHGGGCSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhH
Confidence 5666666554433 3345667777766554
No 51
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.75 E-value=3 Score=38.67 Aligned_cols=106 Identities=18% Similarity=0.197 Sum_probs=65.7
Q ss_pred hhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCC
Q psy2712 42 RTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIED 121 (602)
Q Consensus 42 ~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d 121 (602)
+.+.....++.-+..+++.|++.+++. .......+.+.|..+. .++.+..|++++.+++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~L~~~L~~~-------------~~~vR~~A~~~L~~~~--------~~~~~~~L~~~l~~~~ 63 (211)
T 3ltm_A 5 PQFEKAAAPLRADPEKVEMYIKNLQDD-------------SYYVRRAAAYALGKIG--------DERAVEPLIKALKDED 63 (211)
T ss_dssp -----------CCGGGHHHHHHHTTCS-------------SHHHHHHHHHHHHHHC--------CGGGHHHHHHHTTCSC
T ss_pred cccchhhhHhhcCHhHHHHHHHHHcCC-------------CHHHHHHHHHHHHHhC--------CccHHHHHHHHHcCCC
Confidence 344455667778899999999998632 1234455666665543 2458999999999888
Q ss_pred ccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q psy2712 122 EIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 122 ~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~ 181 (602)
+.+-..++++|..++ . + ...+.|.+.....+|..-..|+.+|. ..++
T Consensus 64 ~~vr~~a~~aL~~~~--~--~--------~~~~~L~~~l~~~~~~vr~~a~~aL~-~~~~ 110 (211)
T 3ltm_A 64 AWVRRAAADALGQIG--D--E--------RAVEPLIKALKDEDGWVRQSAAVALG-QIGD 110 (211)
T ss_dssp HHHHHHHHHHHHHHC--C--G--------GGHHHHHHHTTCSSHHHHHHHHHHHH-HHCC
T ss_pred HHHHHHHHHHHHhhC--C--H--------HHHHHHHHHHcCCCHHHHHHHHHHHH-HhCc
Confidence 878777888888877 1 1 12344555556677887788999994 4443
No 52
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=84.55 E-value=10 Score=37.14 Aligned_cols=149 Identities=9% Similarity=0.093 Sum_probs=86.0
Q ss_pred hhHHHHHHHHHHHhhCC-CCCC-C--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYVYP-CHFM-Q--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDM 159 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P-~lFk-~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~ 159 (602)
....|.+.|..++.... .-|. . ...+..|++.+.+..+.|.+.+-.+|-.+... .....+. ....+++.|...
T Consensus 77 v~~~A~~al~~la~~l~~~~f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~--~~~~~~~~~l~~ll~~l~~~ 154 (249)
T 2qk1_A 77 AVALAAQSVELICDKLKTPGFSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKY--YDPLASSGRNEDMLKDILEH 154 (249)
T ss_dssp HHHHHHHHHHHHHHHHCTTTSCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHH--SCTTCTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH--ccccccCCcHHHHHHHHHHH
Confidence 46778899999999887 7787 6 33445556665666666666555555444421 1111111 012467777776
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHH-HHHHHHHhhcCCCCCCCcc-hHHHHHHHHHHhCCCC
Q psy2712 160 IEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLF-VDILDKVKMNLTPDSPNYR-TAIIALGHIAYNMPNK 237 (602)
Q Consensus 160 al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~-~~Iie~l~~~L~~~s~~l~-t~L~sLg~Ia~~aP~~ 237 (602)
....+|..=..|..+|.......+ .++.+...++ ..|+..++.-++...+... .+..+|+.|++.-.+.
T Consensus 155 l~~k~~~vk~~al~~l~~~~~~~~---------~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~ 225 (249)
T 2qk1_A 155 MKHKTPQIRMECTQLFNASMKEEK---------DGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMN 225 (249)
T ss_dssp TTCSSHHHHHHHHHHHHHHHHHCC---------SCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSG
T ss_pred HcCCChHHHHHHHHHHHHHHHHcC---------CcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCHH
Confidence 666778433345566654443321 1112223567 7888888777755443443 3588888888877653
Q ss_pred -chhhHHH
Q psy2712 238 -FPAVIKN 244 (602)
Q Consensus 238 -fe~~~~~ 244 (602)
|..+...
T Consensus 226 ~~~p~l~~ 233 (249)
T 2qk1_A 226 TFVKTLEH 233 (249)
T ss_dssp GGHHHHHH
T ss_pred HHHHHHHH
Confidence 5555443
No 53
>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16
Probab=84.32 E-value=5.2 Score=38.71 Aligned_cols=148 Identities=7% Similarity=0.051 Sum_probs=83.2
Q ss_pred CCcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhccc--c----cccccccCcHHHHHHHhhhhcCCCCcccc
Q psy2712 4 HDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKK--V----MPHRLTGNAIPILISYVDDCLNHGNLIDE 77 (602)
Q Consensus 4 ~d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk--~----spl~~N~ssI~~Li~~v~~~~~g~~~~ee 77 (602)
.|++..||...+.++...+..+ .+ +.|++.+.+.--..+ + .-+-.....++.++..+.+...++.
T Consensus 33 ~~~~~~vr~~A~~~L~~~~~~~--~~---~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~~~l~~~L~~~~~~d~---- 103 (280)
T 1oyz_A 33 DDHNSLKRISSARVLQLRGGQD--AV---RLAIEFCSDKNYIRRDIGAFILGQIKICKKCEDNVFNILNNMALNDK---- 103 (280)
T ss_dssp TCSSHHHHHHHHHHHHHHCCHH--HH---HHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTHHHHHHHHHHHHHHCS----
T ss_pred HcCCHHHHHHHHHHHHccCCch--HH---HHHHHHHcCCCHHHHHHHHHHHHHhccccccchHHHHHHHHHHhcCC----
Confidence 4778899999999888776332 33 445544422100000 0 0011123456666665542110111
Q ss_pred cCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHH
Q psy2712 78 LGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQ 157 (602)
Q Consensus 78 ~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk 157 (602)
.......+...|..+....|..- ++.++.|+..+.++++.|-..++.+|..++. ++ ..+.|.
T Consensus 104 ----~~~vr~~a~~aL~~l~~~~~~~~--~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~----~~--------~~~~L~ 165 (280)
T 1oyz_A 104 ----SACVRATAIESTAQRCKKNPIYS--PKIVEQSQITAFDKSTNVRRATAFAISVIND----KA--------TIPLLI 165 (280)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCGGGH--HHHHHHHHHHTTCSCHHHHHHHHHHHHTC-------C--------CHHHHH
T ss_pred ----CHHHHHHHHHHHHHHhccCCccc--HHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC----HH--------HHHHHH
Confidence 22345667777877776665432 3478888888888788777767888777761 11 344455
Q ss_pred HHHhcCCHHHHHHHHHHHHHh
Q psy2712 158 DMIEKGTPKQAKQAIRCLYKN 178 (602)
Q Consensus 158 ~~al~GtP~qAK~Avr~L~a~ 178 (602)
.+....+|.--..|+..|..+
T Consensus 166 ~~l~d~~~~vr~~a~~aL~~~ 186 (280)
T 1oyz_A 166 NLLKDPNGDVRNWAAFAININ 186 (280)
T ss_dssp HHHTCSSHHHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHHhh
Confidence 555566776666788888443
No 54
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=81.85 E-value=13 Score=40.15 Aligned_cols=164 Identities=10% Similarity=-0.000 Sum_probs=98.8
Q ss_pred cccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC----C--CCCchHHHHHHHhcccCCcc-
Q psy2712 51 HRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC----H--FMQQSSIQALLKMLTIEDEI- 123 (602)
Q Consensus 51 l~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~----l--Fk~~e~~~~L~~ll~~~d~~- 123 (602)
.+...-.||.|++.+..+ + .....+.+...|..+|..++. + -.+ .+..|++++...++.
T Consensus 281 ~I~~~GaI~~LV~lLl~s--~----------~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~G--al~~Lv~LL~~~~~~~ 346 (458)
T 3nmz_A 281 TLREVGSVKALMECALEV--K----------KESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQTN 346 (458)
T ss_dssp HHHHTTHHHHHHHHHTTC--C----------SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTT--HHHHHHHHTTCCCSSS
T ss_pred HHHHcCCHHHHHHHHhcC--C----------CHHHHHHHHHHHHHHccCCHHHHHHHHHhcC--cHHHHHHHhcCCCCcc
Confidence 345566789999976432 1 123556677888888885532 2 245 889999999854432
Q ss_pred ---chHHHHHHHHhhccCC-CCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccch
Q psy2712 124 ---VAPLVFSVLSFLGKYR-PLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRT 198 (602)
Q Consensus 124 ---v~e~~Lk~La~~~k~k-~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~ 198 (602)
+.+.+..+|.+++.|- ..++.... .....++.|..+-..|++..-|.|+.+|..++..... +..
T Consensus 347 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~-----------~~~ 415 (458)
T 3nmz_A 347 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-----------DQE 415 (458)
T ss_dssp TTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHH-----------HHH
T ss_pred hHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHH-----------HHH
Confidence 5665767776665310 01121111 1234678888888899999889999999665532210 100
Q ss_pred hhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCch
Q psy2712 199 VDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFP 239 (602)
Q Consensus 199 ~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe 239 (602)
...=...+..++.-|..+++. .-.+..+|..|+...|..|.
T Consensus 416 ~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~ky~ 457 (458)
T 3nmz_A 416 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457 (458)
T ss_dssp HHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSCC--
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHhhhc
Confidence 111124466676666555543 34567888888888887664
No 55
>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...
Probab=81.65 E-value=60 Score=34.68 Aligned_cols=147 Identities=14% Similarity=0.030 Sum_probs=86.3
Q ss_pred CcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCc
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGT 84 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~ 84 (602)
++++.||...+.++-+.|... +..- ..+.....++.|+..+... .. +. ....
T Consensus 154 s~~~~v~e~A~~aL~nLa~d~-------~~~r-------------~~v~~~G~i~~Ll~lL~~~---~~--~~---~~~~ 205 (510)
T 3ul1_B 154 SPHAHISEQAVWALGNIAGDG-------SAFR-------------DLVIKHGAIDPLLALLAVP---DL--ST---LACG 205 (510)
T ss_dssp CSCHHHHHHHHHHHHHHHTTC-------HHHH-------------HHHHHTTCHHHHHHHTCSS---CG--GG---SCHH
T ss_pred CCCHHHHHHHHHHHHHHHhCC-------HHHH-------------HHHHHcCChHHHHHHHHhc---cc--hh---hhHH
Confidence 456667777777776665422 2222 2334556788888888632 00 00 0111
Q ss_pred hhHHHHHHHHHHHhhCCCCCC-C--chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPCHFM-Q--QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMI 160 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk-~--~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~a 160 (602)
....+...|..++......-. . +..+..|+.++..+++.+...++.+|++++... .+.... ....+.+.|..+.
T Consensus 206 ~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL 283 (510)
T 3ul1_B 206 YLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGP--NERIEMVVKKGVVPQLVKLL 283 (510)
T ss_dssp HHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSC--HHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHHHHHHHHHhhch--hhhHHHHHhcccchhhhhhh
Confidence 223344445555443221111 1 346777888888878878888999999998432 111111 2334678888998
Q ss_pred hcCCHHHHHHHHHHHHHhcCC
Q psy2712 161 EKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 161 l~GtP~qAK~Avr~L~a~~~~ 181 (602)
..+++.--..|+++|..++..
T Consensus 284 ~~~~~~v~~~al~aL~nl~~~ 304 (510)
T 3ul1_B 284 GATELPIVTPALRAIGNIVTG 304 (510)
T ss_dssp TCSCHHHHHHHHHHHHHHTTS
T ss_pred cCCChhhhhHHHHHHHHhhcC
Confidence 899998888899999655443
No 56
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=81.56 E-value=18 Score=37.55 Aligned_cols=165 Identities=10% Similarity=-0.002 Sum_probs=99.7
Q ss_pred cccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCC----CC--CCCchHHHHHHHhcccCCc--
Q psy2712 51 HRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYP----CH--FMQQSSIQALLKMLTIEDE-- 122 (602)
Q Consensus 51 l~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P----~l--Fk~~e~~~~L~~ll~~~d~-- 122 (602)
.+...-.||.|++.+..+ + .....+.+...|..+|..++ .+ -.+ .+..|++++...++
T Consensus 165 ~i~~~G~Ip~Lv~lL~~~--~----------~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~G--ai~~Lv~lL~~~~~~~ 230 (354)
T 3nmw_A 165 TLREVGSVKALMECALEV--K----------KESTLKSVLSALWNLSAHCTENKADICAVDG--ALAFLVGTLTYRSQTN 230 (354)
T ss_dssp HHHHTTHHHHHHHHHHHC--C----------CHHHHHHHHHHHHHHHTTCHHHHHHHHHSTT--HHHHHHHHTTCCCSSS
T ss_pred HHHHCCCHHHHHHHHhcC--C----------CHHHHHHHHHHHHHHHccChhhhHHHHHhcC--cHHHHHHHhccCCCcc
Confidence 345567799999986533 1 12355667788888887553 33 245 89999999985443
Q ss_pred --cchHHHHHHHHhhccCC-CCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccch
Q psy2712 123 --IVAPLVFSVLSFLGKYR-PLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRT 198 (602)
Q Consensus 123 --~v~e~~Lk~La~~~k~k-~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~ 198 (602)
.+.+.+.-+|.+++.+- ..++.... .+...++.|.++-..|++..-|.|+.+|..++..... +..
T Consensus 231 ~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~~~-----------~~~ 299 (354)
T 3nmw_A 231 TLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-----------DQE 299 (354)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHH-----------HHH
T ss_pred cHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCChHHHHHHHHHHHHHhCCCHH-----------HHH
Confidence 25665666776665210 01111111 1234678888888899999999999999665532210 000
Q ss_pred hhHHHHHHHHHhhcCCCCCCC-cchHHHHHHHHHHhCCCCchh
Q psy2712 199 VDLFVDILDKVKMNLTPDSPN-YRTAIIALGHIAYNMPNKFPA 240 (602)
Q Consensus 199 ~~~~~~Iie~l~~~L~~~s~~-l~t~L~sLg~Ia~~aP~~fe~ 240 (602)
...=...+..++.-|..+++. ...+..+|..|+...|..+.+
T Consensus 300 ~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~ 342 (354)
T 3nmw_A 300 ALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKD 342 (354)
T ss_dssp HHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC-
T ss_pred HHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhh
Confidence 111124466666666555443 345678888888888877653
No 57
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=81.13 E-value=32 Score=31.21 Aligned_cols=183 Identities=14% Similarity=0.128 Sum_probs=106.9
Q ss_pred chHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcccc
Q psy2712 107 QSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIE 186 (602)
Q Consensus 107 ~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~~~ 186 (602)
+.....+++.+.+.++.+-..++.+|..++. ++ ..+.|.++...++|..-..|+++|.. .++.
T Consensus 13 ~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~----~~--------~~~~L~~~l~~~~~~vr~~a~~~L~~-~~~~---- 75 (201)
T 3ltj_A 13 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD----ER--------AVEPLIKALKDEDAWVRRAAADALGQ-IGDE---- 75 (201)
T ss_dssp HHHHHHHHHHTTCSCHHHHHHHHHHHHHHCC----GG--------GHHHHHHHTTCSSHHHHHHHHHHHHH-HCCG----
T ss_pred CcchHHHHHHhcCCCHHHHHHHHHHHHhcCC----hh--------HHHHHHHHHcCCCHHHHHHHHHHHHh-hCCH----
Confidence 5689999999998888887878888888772 11 23344455557788877889999943 4432
Q ss_pred cccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccC
Q psy2712 187 VMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYK 266 (602)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~ 266 (602)
..+..+++ .|. +++-.....++..++..... + ....+++ +| .+.
T Consensus 76 -------------~~~~~L~~----~l~--d~~~~vr~~a~~aL~~~~~~-------~-~~~~L~~-~l-~d~------- 119 (201)
T 3ltj_A 76 -------------RAVEPLIK----ALK--DEDGWVRQSAAVALGQIGDE-------R-AVEPLIK-AL-KDE------- 119 (201)
T ss_dssp -------------GGHHHHHH----HTT--CSSHHHHHHHHHHHHHHCCG-------G-GHHHHHH-HT-TCS-------
T ss_pred -------------HHHHHHHH----HHc--CCCHHHHHHHHHHHHHhCcH-------H-HHHHHHH-HH-cCC-------
Confidence 12233333 333 23333334444444444321 1 1223332 33 110
Q ss_pred CCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhh
Q psy2712 267 KDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKIC 346 (602)
Q Consensus 267 ~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA 346 (602)
.-..+..|+..+.+.- +...... |..++.. + -...|..|..++-++.
T Consensus 120 -----------~~~vr~~a~~aL~~~~-----~~~~~~~----L~~~l~d----------~---~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 120 -----------DWFVRIAAAFALGEIG-----DERAVEP----LIKALKD----------E---DGWVRQSAADALGEIG 166 (201)
T ss_dssp -----------SHHHHHHHHHHHHHHT-----CGGGHHH----HHHHTTC----------S---SHHHHHHHHHHHHHHC
T ss_pred -----------CHHHHHHHHHHHHHhC-----CHHHHHH----HHHHHcC----------C---CHHHHHHHHHHHHHhC
Confidence 1134677777777652 1122233 3344421 1 1368999999988883
Q ss_pred cccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHH
Q psy2712 347 EQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHK 384 (602)
Q Consensus 347 ~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k 384 (602)
.++....|..+++|+.+.||..=..-|.+
T Consensus 167 ---------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~ 195 (201)
T 3ltj_A 167 ---------GERVRAAMEKLAETGTGFARKVAVNYLET 195 (201)
T ss_dssp ---------SHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred ---------chhHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 25566677788899999999987766654
No 58
>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}
Probab=80.22 E-value=20 Score=41.63 Aligned_cols=110 Identities=15% Similarity=0.058 Sum_probs=70.3
Q ss_pred cHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhh----CC-CCCCC---chHHHHHHHhcccC--CccchH
Q psy2712 57 AIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYV----YP-CHFMQ---QSSIQALLKMLTIE--DEIVAP 126 (602)
Q Consensus 57 sI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~----~P-~lFk~---~e~~~~L~~ll~~~--d~~v~e 126 (602)
.++.|...++.. .......|.--|..++.. .+ ..|.. ++.++.|+.++..+ |+.+.+
T Consensus 331 gv~~L~~Ll~s~-------------~~~vr~~Al~~L~kl~s~~~~d~~~~~~~~g~i~~Lv~~l~~lL~~~~~d~~v~~ 397 (810)
T 3now_A 331 GVDILKRLYHSK-------------NDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRR 397 (810)
T ss_dssp HHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHTTTTTTTSCCSSTTTHHHHHHHHHHHHHHCSSCCSSHHH
T ss_pred CcHHHHHHHcCC-------------CHHHHHHHHHHHHHhccccccCccccchhhccHHHHHHHHHHHhcCCCCCHHHHH
Confidence 357777777522 112344566667777643 22 45654 34577788887755 777778
Q ss_pred HHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q psy2712 127 LVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLG 180 (602)
Q Consensus 127 ~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~ 180 (602)
.++.+|++++......+.+- .+..+++.|..+...+.+.-...|.++|.-++.
T Consensus 398 ~AveaLayLS~~~~vk~~lv-~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~ 450 (810)
T 3now_A 398 WAADGLAYLTLDAECKEKLI-EDKASIHALMDLARGGNQSCLYGVVTTFVNLCN 450 (810)
T ss_dssp HHHHHHHHHTTSHHHHHHHH-HCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCcHHHHHHH-HccchHHHHHHHhCCCChHHHHHHHHHHHHHcC
Confidence 89999999984322112222 234588899999888888777788899854443
No 59
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=77.01 E-value=8.7 Score=45.61 Aligned_cols=187 Identities=10% Similarity=0.109 Sum_probs=106.1
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCC-chhhhhHHhHHHHHHHHHHhc
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPL-GEVFKEEMKQLVPICQDMIEK 162 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~-~~~~p~~~~~l~~~Lk~~al~ 162 (602)
+..+.+..+-..+...-+........++.|.+.+...... |.++.++.++++.... +..-|..-..+-..|..++-.
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~dk 107 (986)
T 2iw3_A 30 NRHEIASEVASFLNGNIIEHDVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIVQLVPAICTNAGNK 107 (986)
T ss_dssp THHHHHHHHHHHHTSSCSSSSCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHHTTHHHHHHHTTCS
T ss_pred HHHHHHHHHHHHHhccccccccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchHHHHHHHHHHhcCC
Confidence 3455566666666655444444445778888877754322 7788888877743211 112343334455566666766
Q ss_pred CCH--HHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcch---HHHHHHHHHHhCCCC
Q psy2712 163 GTP--KQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRT---AIIALGHIAYNMPNK 237 (602)
Q Consensus 163 GtP--~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t---~L~sLg~Ia~~aP~~ 237 (602)
|.+ ++|++|+..|+..++.-. ....+..+++.+ ... ..+.+ +|..|+.++..+|+.
T Consensus 108 ~~~v~~aa~~~~~~~~~~~~~~a--------------~~~~~~~~~~~~----~~~-~kw~~k~~~l~~~~~~~~~~~~~ 168 (986)
T 2iw3_A 108 DKEIQSVASETLISIVNAVNPVA--------------IKALLPHLTNAI----VET-NKWQEKIAILAAFSAMVDAAKDQ 168 (986)
T ss_dssp SHHHHHHHHHHHHHHHHHSCGGG--------------HHHHHHHHHHHH----HHC-CCHHHHHHHHHHHHHHHHHSHHH
T ss_pred chHHHHHHHHHHHHHHHhCCHHH--------------HHHHHHHHHHHh----ccc-cchHHHHHHHHHHHHHHHHhHHH
Confidence 665 799999999977666421 134444454444 211 13444 555666666666777
Q ss_pred chhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHH
Q psy2712 238 FPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVI 314 (602)
Q Consensus 238 fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL 314 (602)
+.....++ .--+ -+ ..|....+ .|-.|.++|...|.-+.+.+ ++|.+-+|..-|
T Consensus 169 ~~~~~~~~-~p~~-~~-------------~~~d~k~~------v~~~~~~~~~~~~~~~~n~d--~~~~~~~~~~~~ 222 (986)
T 2iw3_A 169 VALRMPEL-IPVL-SE-------------TMWDTKKE------VKAAATAAMTKATETVDNKD--IERFIPSLIQCI 222 (986)
T ss_dssp HHHHHHHH-HHHH-HH-------------HTTCSSHH------HHHHHHHHHHHHGGGCCCTT--TGGGHHHHHHHH
T ss_pred HHHhccch-hcch-Hh-------------hcccCcHH------HHHHHHHHHHHHHhcCCCcc--hhhhHHHHHHHh
Confidence 77776663 2222 11 23544432 37788899988886665543 334443343333
No 60
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=71.98 E-value=25 Score=37.25 Aligned_cols=129 Identities=15% Similarity=0.117 Sum_probs=85.1
Q ss_pred cHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCC---CCchHHHHHHHhcccCCccchHHHHHHHH
Q psy2712 57 AIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHF---MQQSSIQALLKMLTIEDEIVAPLVFSVLS 133 (602)
Q Consensus 57 sI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lF---k~~e~~~~L~~ll~~~d~~v~e~~Lk~La 133 (602)
.||.|+.+++.. .......|...|..++...|..= .....++.|++++..+++.+.+.+..+|.
T Consensus 3 ~l~~lv~~L~s~-------------~~~~q~~A~~~L~~l~~~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~ 69 (457)
T 1xm9_A 3 TIPKAVQYLSSQ-------------DEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALR 69 (457)
T ss_dssp CHHHHHHHHHSS-------------CTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHcCChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 688899988632 22466778888888887666422 11347899999999888888888999999
Q ss_pred hhccCCCCchhhhh-HHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhh
Q psy2712 134 FLGKYRPLGEVFKE-EMKQLVPICQDMIE-KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKM 211 (602)
Q Consensus 134 ~~~k~k~~~~~~p~-~~~~l~~~Lk~~al-~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~ 211 (602)
+++.. .++.-.. ...-.++.|.++-. .|++..-+.|+.+|..++...+ . + ..+....+..++.
T Consensus 70 nLa~~--~~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~-~-----------~-~~i~~g~i~~Lv~ 134 (457)
T 1xm9_A 70 NLVFR--STTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDE-L-----------K-EELIADALPVLAD 134 (457)
T ss_dssp HHHSS--CHHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSS-T-----------H-HHHHHHHHHHHHH
T ss_pred HHhcC--CHHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHH-h-----------H-HHHHhccHHHHHH
Confidence 88842 1111110 12234677778777 8889888899999966665432 1 1 2233466667766
Q ss_pred cC
Q psy2712 212 NL 213 (602)
Q Consensus 212 ~L 213 (602)
-|
T Consensus 135 ll 136 (457)
T 1xm9_A 135 RV 136 (457)
T ss_dssp HT
T ss_pred HH
Confidence 66
No 61
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=66.04 E-value=1.1e+02 Score=35.32 Aligned_cols=235 Identities=12% Similarity=0.081 Sum_probs=121.9
Q ss_pred hHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHH--HH-HHHHHHHHhcCCCcc
Q psy2712 108 SSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQ--AK-QAIRCLYKNLGDSYT 184 (602)
Q Consensus 108 e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q--AK-~Avr~L~a~~~~~~~ 184 (602)
..+..|+.++..+++.+-+.+.++|.+++..+.....+- ..--.+.|-.+...|++.+ +| .|+++|+.+.-....
T Consensus 457 GvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lv--qqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np 534 (778)
T 3opb_A 457 ELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLA--QQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNP 534 (778)
T ss_dssp THHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHH--HTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCH
T ss_pred cCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHH--HCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCH
Confidence 466677777777777888889999999985432222222 2235677888888887653 44 788888554322110
Q ss_pred cccccccccCccchhhHHHHHHHHHhhcCCC--CCCC-------------cchHHHHHHHHHHhCCCCchhhHHHHH---
Q psy2712 185 IEVMDENSENGVRTVDLFVDILDKVKMNLTP--DSPN-------------YRTAIIALGHIAYNMPNKFPAVIKNTV--- 246 (602)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~--~s~~-------------l~t~L~sLg~Ia~~aP~~fe~~~~~iI--- 246 (602)
.. .-| ++.. .+.+..++.-|.. +.+. --.+|.+|.-||......=++--..+|
T Consensus 535 ~~--~f~---~~~~----~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ 605 (778)
T 3opb_A 535 GL--IFK---KYSA----LNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTK 605 (778)
T ss_dssp HH--HSS---SSCS----TTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSH
T ss_pred HH--HcC---CCcc----ccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhc
Confidence 00 000 0000 1455555555552 2111 114566777777643110000011222
Q ss_pred --HHHHHHHHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccc-hhh-------hHHHHHHHHHHHHhh
Q psy2712 247 --SRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKA-HKE-------SAQKTFRMLNAVIVN 316 (602)
Q Consensus 247 --~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~-~~~-------~a~~v~kLL~~lL~~ 316 (602)
+..|+ ++|..+ ....|..|..+++|....-.. .++ .+.+-+++|..++..
T Consensus 606 ga~~~L~-~LL~s~-------------------n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s 665 (778)
T 3opb_A 606 VYWSTIE-NLMLDE-------------------NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQL 665 (778)
T ss_dssp HHHHHHH-HGGGCS-------------------SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGC
T ss_pred CHHHHHH-HHHhCC-------------------CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcC
Confidence 22222 222211 125578888898888753221 011 222347788888744
Q ss_pred cCcccCCCCCCHHHHHHHHHHHHHHHhhhh-cccCc-CCcCCH-HHHHHHHHHHhc--CchHHHHHHHHHHHHhh
Q psy2712 317 KGDLLQSDKMSKQEMAWMRLSAGCAMLKIC-EQKGV-GDQYSP-EQFYNLSRLLID--EVPEVREIFANKLHKGL 386 (602)
Q Consensus 317 ~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA-~~~~~-~~~I~~-~~f~~La~lvqD--~~~~VR~~Fl~KL~k~L 386 (602)
++ -..|-+|+-++--++ ..+.. ...+.. .-+..+..+.++ +..++|++-+.-|....
T Consensus 666 -~D------------~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~ 727 (778)
T 3opb_A 666 -SD------------VESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLF 727 (778)
T ss_dssp -SC------------HHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred -CC------------HHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 22 134455655555553 23321 234443 355567778888 89999999877776665
No 62
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=64.47 E-value=24 Score=34.56 Aligned_cols=144 Identities=18% Similarity=0.249 Sum_probs=88.1
Q ss_pred ccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHH
Q psy2712 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSV 131 (602)
Q Consensus 52 ~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~ 131 (602)
.||.+-++++|+++.+ + .-+-..-|+.++..|+..+|+++.+ .++.|.-+++.++. ++.+..+
T Consensus 28 ~~d~~~l~~lI~~LDD---------D----lwtV~kNAl~vi~~i~~~~~el~ep--l~~kL~vm~~ksEa--IpltqeI 90 (253)
T 2db0_A 28 KYDESVLKKLIELLDD---------D----LWTVVKNAISIIMVIAKTREDLYEP--MLKKLFSLLKKSEA--IPLTQEI 90 (253)
T ss_dssp HHCHHHHHHHHHHTTC---------S----CHHHHHHHHHHHHHHHTTCGGGHHH--HHHHHHHHHHHCCS--HHHHHHH
T ss_pred HhhHHHHHHHHHHhcc---------H----HHHHHHhHHHHHHHHHHHhHHHHHH--HHHHHHHHHhhccc--CchHHHH
Confidence 5788888999988842 1 1134566999999999999999999 99999999875432 3322222
Q ss_pred HHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHH---HHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHH
Q psy2712 132 LSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQ---AKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDK 208 (602)
Q Consensus 132 La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~q---AK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~ 208 (602)
-..+|. +...-|..-....|.+-.=-.-|.|+. --||.-=|+...+ ..+..+++.
T Consensus 91 a~a~G~---la~i~Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP-------------------~l~~~v~rd 148 (253)
T 2db0_A 91 AKAFGQ---MAKEKPELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANP-------------------MLMASIVRD 148 (253)
T ss_dssp HHHHHH---HHHHCHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCH-------------------HHHHHHHHH
T ss_pred HHHHhH---HHHhCHHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhCh-------------------HHHHHHHHH
Confidence 223331 112244455567777655445567642 2255555543222 345677777
Q ss_pred HhhcCCCCCCCcchHHHHHHHHHHhCCC
Q psy2712 209 VKMNLTPDSPNYRTAIIALGHIAYNMPN 236 (602)
Q Consensus 209 l~~~L~~~s~~l~t~L~sLg~Ia~~aP~ 236 (602)
+...|+ |++-..+|++|.-|.-..-.
T Consensus 149 i~smlt--skd~~Dkl~aLnFi~alGen 174 (253)
T 2db0_A 149 FMSMLS--SKNREDKLTALNFIEAMGEN 174 (253)
T ss_dssp HHHHTS--CSSHHHHHHHHHHHHTCCTT
T ss_pred HHHHhc--CCChHHHHHHHHHHHHHhcc
Confidence 767776 55555666666666544433
No 63
>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24
Probab=60.16 E-value=45 Score=35.23 Aligned_cols=98 Identities=10% Similarity=0.121 Sum_probs=61.0
Q ss_pred chHHHHHHHhccc-CCccchHHHHHHHHhhccCC-CCchhh-h-hH-HhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q psy2712 107 QSSIQALLKMLTI-EDEIVAPLVFSVLSFLGKYR-PLGEVF-K-EE-MKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 107 ~e~~~~L~~ll~~-~d~~v~e~~Lk~La~~~k~k-~~~~~~-p-~~-~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~ 181 (602)
.+.++.|+.++.. +++.+.+.++.+|.+++... +..... . .. ....++.|.++-..|+++.-|.|+.+|.-++.+
T Consensus 282 ~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~ 361 (457)
T 1xm9_A 282 SDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRH 361 (457)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcC
Confidence 3456777787763 45778888899999887422 111111 0 01 124578999999999998888888888545444
Q ss_pred CcccccccccccCccchhhHHHHHHHHHhhcCCCCC
Q psy2712 182 SYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDS 217 (602)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s 217 (602)
.+- ...+-...+..++.-|..++
T Consensus 362 ~~~-------------~~~i~~~~i~~Lv~lL~~~~ 384 (457)
T 1xm9_A 362 PLL-------------HRVMGNQVFPEVTRLLTSHT 384 (457)
T ss_dssp GGG-------------HHHHHHHTHHHHHHTTTSCC
T ss_pred HHH-------------HHHHHHhhhHHHHHhccCCC
Confidence 321 12344566677777775543
No 64
>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}
Probab=59.92 E-value=1.2e+02 Score=29.77 Aligned_cols=211 Identities=12% Similarity=0.189 Sum_probs=121.3
Q ss_pred CchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC-C-HH-HHHHHHHHHHHhcCCC
Q psy2712 106 QQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG-T-PK-QAKQAIRCLYKNLGDS 182 (602)
Q Consensus 106 ~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G-t-P~-qAK~Avr~L~a~~~~~ 182 (602)
+++.+++++..+.++-=.|.--+|.++..++ +.+++... -+..+|--+.... + |. |+ - .+.+..+..-+
T Consensus 30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~--~~~~el~e----pl~~kL~vm~~ksEaIpltqe-I-a~a~G~la~i~ 101 (253)
T 2db0_A 30 DESVLKKLIELLDDDLWTVVKNAISIIMVIA--KTREDLYE----PMLKKLFSLLKKSEAIPLTQE-I-AKAFGQMAKEK 101 (253)
T ss_dssp CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHH--TTCGGGHH----HHHHHHHHHHHHCCSHHHHHH-H-HHHHHHHHHHC
T ss_pred hHHHHHHHHHHhccHHHHHHHhHHHHHHHHH--HHhHHHHH----HHHHHHHHHHhhcccCchHHH-H-HHHHhHHHHhC
Confidence 4668888888776543336666899999888 44454322 2333333332222 2 42 32 1 13331111111
Q ss_pred cccccccccccCccchhhHHHHHHHHHhhcCCCCCCCc-chHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCcc
Q psy2712 183 YTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNY-RTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEE 261 (602)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l-~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~ 261 (602)
-+....++..+..++-.+++.. ...=.+|++|++..|.....-.+++ . -++ . ++
T Consensus 102 ----------------Pe~v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~l~~~v~rdi-~-----sml-t--sk 156 (253)
T 2db0_A 102 ----------------PELVKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPMLMASIVRDF-M-----SML-S--SK 156 (253)
T ss_dssp ----------------HHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-H-----HHT-S--CS
T ss_pred ----------------HHHHHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChHHHHHHHHHH-H-----HHh-c--CC
Confidence 1344667777777777776543 3345689999999997665444441 1 122 2 11
Q ss_pred ccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchh-hhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHH
Q psy2712 262 SYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK-ESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGC 340 (602)
Q Consensus 262 ~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~-~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~ 340 (602)
+ ..-|+.||-+ +-++..+. +.+.|.+-=|+++|.-+.++ .|-+|-.
T Consensus 157 d----------------~~Dkl~aLnF----i~alGen~~~yv~PfLprL~aLL~D~dei-------------VRaSaVE 203 (253)
T 2db0_A 157 N----------------REDKLTALNF----IEAMGENSFKYVNPFLPRIINLLHDGDEI-------------VRASAVE 203 (253)
T ss_dssp S----------------HHHHHHHHHH----HHTCCTTTHHHHGGGHHHHHGGGGCSSHH-------------HHHHHHH
T ss_pred C----------------hHHHHHHHHH----HHHHhccCccccCcchHHHHHHHcCcchh-------------hhHHHHH
Confidence 1 1237777755 45666665 77888888888888544443 5789999
Q ss_pred HHhhhhcccCcCCcCCHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Q psy2712 341 AMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHKGL 386 (602)
Q Consensus 341 ~lLKLA~~~~~~~~I~~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L 386 (602)
.+-+||+. +..+-+ ....--.=+.|.+.-|-+...+-|-+.+
T Consensus 204 tL~~lA~~---npklRk-ii~~kl~e~~D~S~lv~~~V~egL~rl~ 245 (253)
T 2db0_A 204 ALVHLATL---NDKLRK-VVIKRLEELNDTSSLVNKTVKEGISRLL 245 (253)
T ss_dssp HHHHHHTS---CHHHHH-HHHHHHHHCCCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHc---CHHHHH-HHHHHHHHhcCcHHHHHHHHHHHHHHHH
Confidence 99999984 333333 2222223567888888766655555544
No 65
>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A
Probab=53.17 E-value=3.1e+02 Score=31.53 Aligned_cols=51 Identities=14% Similarity=0.087 Sum_probs=37.9
Q ss_pred hhHHHHHHHHHHHh-hCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhcc
Q psy2712 85 AGERGLKLLVMLSY-VYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGK 137 (602)
Q Consensus 85 ~~~~a~eLL~~IS~-~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k 137 (602)
.....-..+..|+. -+|.-.-. .+..|+..+..+++...+++|.+|..+.+
T Consensus 101 ir~~l~~~ia~ia~~d~p~~Wp~--ll~~L~~~l~s~~~~~~~~aL~~l~~i~~ 152 (960)
T 1wa5_C 101 LQVQIGEAISSIADSDFPDRWPT--LLSDLASRLSNDDMVTNKGVLTVAHSIFK 152 (960)
T ss_dssp HHHHHHHHHHHHHHHHSTTTCTT--HHHHHHTTCCSSCTTHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHHHHHhhCccchhH--HHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 33445555666665 48865544 99999999987777888999999998874
No 66
>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*
Probab=46.93 E-value=41 Score=33.88 Aligned_cols=143 Identities=13% Similarity=0.067 Sum_probs=91.2
Q ss_pred CcchhhHHHHHHHHHhhhhccccccccchhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCc
Q psy2712 5 DTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGT 84 (602)
Q Consensus 5 d~~~~~r~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~ 84 (602)
.++..||...+.+|-+.+..+ +..-.. +++...|+.|+..++.. . ..+
T Consensus 93 s~~~~vr~~Aa~~Lg~ia~~n-------~~~~~~-------------vv~~g~l~~Ll~LL~~~----~--------~~~ 140 (296)
T 1xqr_A 93 AGAAGLRWRAAQLIGTCSQNV-------AAIQEQ-------------VLGLGALRKLLRLLDRD----A--------CDT 140 (296)
T ss_dssp CSSHHHHHHHHHHHHHHHTTC-------HHHHHH-------------HHHTTHHHHHHHHHHHC----S--------CHH
T ss_pred CCCHHHHHHHHHHHHHHHhCC-------HHHHHH-------------HHHCCCHHHHHHHHccC----C--------CHH
Confidence 456778888888887777543 322222 23456899999998742 0 123
Q ss_pred hhHHHHHHHHHHHhhCCC---CCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHH
Q psy2712 85 AGERGLKLLVMLSYVYPC---HFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMI 160 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~---lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~a 160 (602)
..+.|.--|..|...+|. .|....-+..|+.++...++.+-..++.+|++++... ++.... .....++.|..+-
T Consensus 141 v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv~~g~i~~Lv~LL 218 (296)
T 1xqr_A 141 VRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLCSMGMVQQLVALV 218 (296)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHHHcCCHHHHHHHH
Confidence 556677777777766654 3332347889999998778777777889998886321 121111 2334677888887
Q ss_pred hcCCHHHHHHHHHHHHHhcCC
Q psy2712 161 EKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 161 l~GtP~qAK~Avr~L~a~~~~ 181 (602)
..+++.--..|.++|..+...
T Consensus 219 ~~~d~~v~~~al~aL~~l~~~ 239 (296)
T 1xqr_A 219 RTEHSPFHEHVLGALCSLVTD 239 (296)
T ss_dssp TSCCSTHHHHHHHHHHHHHTT
T ss_pred cCCChhHHHHHHHHHHHHHhC
Confidence 777775556777777555544
No 67
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=46.80 E-value=68 Score=35.75 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=77.5
Q ss_pred cccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCC----C-CCCchHHHHHHHhcccCCcc
Q psy2712 49 MPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPC----H-FMQQSSIQALLKMLTIEDEI 123 (602)
Q Consensus 49 spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~----l-Fk~~e~~~~L~~ll~~~d~~ 123 (602)
.+--|....|+.|++++... .......|...|..++...+. + -.+ .+..|+.+|...++.
T Consensus 41 ~~~~~~~~~i~~LV~~L~s~-------------~~~~q~~Aa~~L~~La~~~~~~k~~V~~~G--~Ip~LV~LL~s~~~~ 105 (584)
T 3l6x_A 41 PPPNWRQPELPEVIAMLGFR-------------LDAVKSNAAAYLQHLCYRNDKVKTDVRKLK--GIPVLVGLLDHPKKE 105 (584)
T ss_dssp CCCCCCCCCHHHHHHHTTCS-------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHTT--HHHHHHHGGGCSSHH
T ss_pred CCCCcccccHHHHHHHHCCC-------------CHHHHHHHHHHHHHHHcCChHHHHHHHHcC--CcHHHHHHHCCCCHH
Confidence 46677888999999999632 122444555667778764443 1 123 789999999988888
Q ss_pred chHHHHHHHHhhccCCCCchh-hhhHHhHHHHHHHHHHhcC-CHHHHHHHHHHHHHhcCC
Q psy2712 124 VAPLVFSVLSFLGKYRPLGEV-FKEEMKQLVPICQDMIEKG-TPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 124 v~e~~Lk~La~~~k~k~~~~~-~p~~~~~l~~~Lk~~al~G-tP~qAK~Avr~L~a~~~~ 181 (602)
+-+.+..+|.+++..+. .+. ..-...--++.|.++...+ ++..-+.|+.+|+.++..
T Consensus 106 vq~~Aa~AL~nLa~~~~-~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~ 164 (584)
T 3l6x_A 106 VHLGACGALKNISFGRD-QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSH 164 (584)
T ss_dssp HHHHHHHHHHHHTSSSC-HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHccCC-HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCC
Confidence 88889999998884211 111 1101223577788887774 666677888888666543
No 68
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=43.23 E-value=49 Score=28.20 Aligned_cols=26 Identities=12% Similarity=0.111 Sum_probs=13.8
Q ss_pred chHHHHHHHhcccCCccchHHHHHHH
Q psy2712 107 QSSIQALLKMLTIEDEIVAPLVFSVL 132 (602)
Q Consensus 107 ~e~~~~L~~ll~~~d~~v~e~~Lk~L 132 (602)
++.+..|++++.++++.|-..+..+|
T Consensus 103 ~~a~~~L~~~l~d~~~~vr~~A~~aL 128 (131)
T 1te4_A 103 ERVRAAMEKLAETGTGFARKVAVNYL 128 (131)
T ss_dssp HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34566666666555554444444444
No 69
>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16
Probab=38.79 E-value=71 Score=27.14 Aligned_cols=59 Identities=19% Similarity=0.218 Sum_probs=40.1
Q ss_pred HHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcC
Q psy2712 109 SIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLG 180 (602)
Q Consensus 109 ~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~ 180 (602)
.+..|++++.++++.|-..++.+|..++ . + ...+.|.......+|.--..|+..| ...+
T Consensus 43 ~~~~L~~~L~d~~~~vR~~A~~aL~~~~--~------~----~a~~~L~~~L~d~~~~VR~~A~~aL-~~~~ 101 (131)
T 1te4_A 43 AFEPLLESLSNEDWRIRGAAAWIIGNFQ--D------E----RAVEPLIKLLEDDSGFVRSGAARSL-EQIG 101 (131)
T ss_dssp THHHHHHGGGCSCHHHHHHHHHHHGGGC--S------H----HHHHHHHHHHHHCCTHHHHHHHHHH-HHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcC--C------H----HHHHHHHHHHcCCCHHHHHHHHHHH-HHhC
Confidence 3688888888888877777888887776 1 1 1234444444567887777888888 4444
No 70
>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}
Probab=38.73 E-value=73 Score=31.08 Aligned_cols=111 Identities=14% Similarity=0.036 Sum_probs=70.7
Q ss_pred CcHHHHHHHhhhhcCCCCcccccCCCCC-chhHHHHHHHHHHHhhCCC----CCCCchHHHHHHHhcccCCccchHHHHH
Q psy2712 56 NAIPILISYVDDCLNHGNLIDELGLHPG-TAGERGLKLLVMLSYVYPC----HFMQQSSIQALLKMLTIEDEIVAPLVFS 130 (602)
Q Consensus 56 ssI~~Li~~v~~~~~g~~~~ee~~~~~~-~~~~~a~eLL~~IS~~~P~----lFk~~e~~~~L~~ll~~~d~~v~e~~Lk 130 (602)
-.||.|++++... + .+ .....|...|..++...|. ++. ..-+..|++++..+++.+-+.+..
T Consensus 8 ~~i~~lV~lL~s~---~---------~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~~~~vq~~Aa~ 74 (233)
T 3tt9_A 8 MTLERAVSMLEAD---H---------MLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQNEDVQRAVCG 74 (233)
T ss_dssp CCHHHHHHTCCSS---C---------CCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCCCHHHHHHHHH
T ss_pred ccHHHHHHHhCCC---C---------chHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCCCHHHHHHHHH
Confidence 4688888888532 1 11 2333455567778776653 221 227899999999878888888888
Q ss_pred HHHhhccCCCCchhhhh-HHhHHHHHHHHHHh-cCCHHHHHHHHHHHHHhcCC
Q psy2712 131 VLSFLGKYRPLGEVFKE-EMKQLVPICQDMIE-KGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 131 ~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al-~GtP~qAK~Avr~L~a~~~~ 181 (602)
+|.+++.. .++.-.. ...--++.|.++.. .|++..-+.|+.+|+.++..
T Consensus 75 aL~nLa~~--~~~nk~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~ 125 (233)
T 3tt9_A 75 ALRNLVFE--DNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125 (233)
T ss_dssp HHHHHHTT--CHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHhC--CHHHHHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcC
Confidence 88888732 1111110 12235777777776 57888888999888766543
No 71
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=38.34 E-value=1.5e+02 Score=33.87 Aligned_cols=141 Identities=12% Similarity=0.161 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcc---cCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHh
Q psy2712 85 AGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLT---IEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIE 161 (602)
Q Consensus 85 ~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~---~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al 161 (602)
..+.+.-.|..|+...+.-... .+..++..+. .+++.|...++.++..+++|- ...|.....+.+.|-..-
T Consensus 465 ~~eaal~al~~i~~~~~~~~~~--~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l---~~~~~~l~~vl~~l~~~l- 538 (963)
T 2x19_B 465 HTEALLYGFQSIAETIDVNYSD--VVPGLIGLIPRISISNVQLADTVMFTIGALSEWL---ADHPVMINSVLPLVLHAL- 538 (963)
T ss_dssp HHHHHHHHHHHHTTSCCSSCCS--HHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHH---HHCHHHHTTTHHHHHHHT-
T ss_pred HHHHHHHHHHHHHhhcCchhhH--HHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH---HhCHHHHHHHHHHHHHHh-
Confidence 4556777777777777664444 7777776653 345556566677777666431 111212222333333222
Q ss_pred cCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCC---CCCCCcchHHHHHHHHHHhCC-CC
Q psy2712 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLT---PDSPNYRTAIIALGHIAYNMP-NK 237 (602)
Q Consensus 162 ~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~---~~s~~l~t~L~sLg~Ia~~aP-~~ 237 (602)
++|+-..+|+.+|..++.+.. .....++.+|++.+..-+. .+.......+.++|.++...| +.
T Consensus 539 -~~~~V~~~A~~al~~l~~~~~------------~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~~ 605 (963)
T 2x19_B 539 -GNPELSVSSVSTLKKICRECK------------YDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEE 605 (963)
T ss_dssp -TCGGGHHHHHHHHHHHHHHTG------------GGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHHH
T ss_pred -CCchHHHHHHHHHHHHHHHHH------------HHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHHH
Confidence 236545566666655443221 1123567777777655443 222344556888888887776 44
Q ss_pred chhhHHH
Q psy2712 238 FPAVIKN 244 (602)
Q Consensus 238 fe~~~~~ 244 (602)
+......
T Consensus 606 ~~~~~~~ 612 (963)
T 2x19_B 606 ILKNLHS 612 (963)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 4444433
No 72
>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A
Probab=35.62 E-value=4.9e+02 Score=28.78 Aligned_cols=138 Identities=15% Similarity=0.135 Sum_probs=80.4
Q ss_pred HHHHHHHhhhhc-CCCCcccccCCCCCchhHHHHHHHHHHHhhC----CCC----------------CCC--------ch
Q psy2712 58 IPILISYVDDCL-NHGNLIDELGLHPGTAGERGLKLLVMLSYVY----PCH----------------FMQ--------QS 108 (602)
Q Consensus 58 I~~Li~~v~~~~-~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~----P~l----------------Fk~--------~e 108 (602)
|+.|+.+++.++ .+.. .....+.|.-.|..+|... |.. ... ..
T Consensus 237 i~~LV~~L~~~~~~~~~--------~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~ 308 (584)
T 3l6x_A 237 VDALIFIVQAEIGQKDS--------DSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPE 308 (584)
T ss_dssp HHHHHHHHHHHHHTTCC--------SCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHH
T ss_pred HHHHHHHHHHhhcccCc--------cHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhccc
Confidence 567777776543 1221 3345666777777776542 221 111 23
Q ss_pred HHHHHHHhcc-cCCccchHHHHHHHHhhccCC-CCchhhhh--HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCCcc
Q psy2712 109 SIQALLKMLT-IEDEIVAPLVFSVLSFLGKYR-PLGEVFKE--EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYT 184 (602)
Q Consensus 109 ~~~~L~~ll~-~~d~~v~e~~Lk~La~~~k~k-~~~~~~p~--~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~~~ 184 (602)
.++.|+.++. ..++.+.|.+..+|.+++.-+ +....+.. ....-.+.|.++-..+++..-+.|+.+|..++.+..
T Consensus 309 ~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~- 387 (584)
T 3l6x_A 309 VVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR- 387 (584)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS-
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh-
Confidence 5677788885 346677788888888885211 11111110 112458889999999999888888888855554432
Q ss_pred cccccccccCccchhhHHHHHHHHHhhcCCCC
Q psy2712 185 IEVMDENSENGVRTVDLFVDILDKVKMNLTPD 216 (602)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~ 216 (602)
.+ ..+-...+..++.-|..+
T Consensus 388 -----------~~-~~I~~g~ip~LV~LL~~~ 407 (584)
T 3l6x_A 388 -----------NK-ELIGKHAIPNLVKNLPGG 407 (584)
T ss_dssp -----------CH-HHHHHHHHHHHHHTSSSS
T ss_pred -----------HH-HHHHhCCHHHHHHHhcCC
Confidence 11 344456666776666443
No 73
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=33.36 E-value=54 Score=31.86 Aligned_cols=69 Identities=10% Similarity=0.069 Sum_probs=46.5
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc-CCccchHHHH
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI-EDEIVAPLVF 129 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~-~d~~v~e~~L 129 (602)
+.++..|.++++.. +.+..-.|+.||..+.+.+...|.. .+.+++|++++.. .++.|-+.+|
T Consensus 44 k~a~ral~krl~~~-------------n~~v~l~aL~LLe~~vkNcG~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil 110 (226)
T 3zyq_A 44 KYAVNSIKKKVNDK-------------NPHVALYALEVMESVVKNCGQTVHDEVANKQTMEELKDLLKRQVEVNVRNKIL 110 (226)
T ss_dssp HHHHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHHHCHHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------------CHHHHHHHHHHHHHHHHhcchHHHHhhccHHHHHHHHHHhccCCCHHHHHHHH
Confidence 56666666666421 3346678999999999999998875 6677777777753 3445666666
Q ss_pred HHHHhhc
Q psy2712 130 SVLSFLG 136 (602)
Q Consensus 130 k~La~~~ 136 (602)
..+..-+
T Consensus 111 ~li~~W~ 117 (226)
T 3zyq_A 111 YLIQAWA 117 (226)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555443
No 74
>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A
Probab=32.54 E-value=2.4e+02 Score=31.00 Aligned_cols=75 Identities=12% Similarity=0.118 Sum_probs=53.7
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcC
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKG 163 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~G 163 (602)
....-|-+++--.-+.||.+=.. .+..+.+++.++|..|=-.++|.|-.++|- +.+ +++...|.++=...
T Consensus 43 k~K~LaaQ~I~kffk~FP~l~~~--Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~----~~i----~kiaDvL~QlLqtd 112 (507)
T 3u0r_A 43 KEKRLAAQFIPKFFKHFPELADS--AINAQLDLCEDEDVSIRRQAIKELPQFATG----ENL----PRVADILTQLLQTD 112 (507)
T ss_dssp HHHHHHHHHHHHHGGGCGGGHHH--HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT----TCH----HHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHhhChhhHHH--HHHHHHHHHhcccHHHHHHHHHhhHHHhhh----hhh----hhHHHHHHHHHhcc
Confidence 35566778888888888887665 999999999988876655688888888842 223 34666666666666
Q ss_pred CHHHH
Q psy2712 164 TPKQA 168 (602)
Q Consensus 164 tP~qA 168 (602)
.|.+.
T Consensus 113 d~~E~ 117 (507)
T 3u0r_A 113 DSAEF 117 (507)
T ss_dssp CHHHH
T ss_pred chHHH
Confidence 66433
No 75
>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}
Probab=29.81 E-value=1.1e+02 Score=31.80 Aligned_cols=186 Identities=13% Similarity=0.106 Sum_probs=94.0
Q ss_pred HHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhccCCCCchhhhhHHhHHHHHHHHHHhcCCHHHHHHHHH
Q psy2712 94 VMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIR 173 (602)
Q Consensus 94 ~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~k~k~~~~~~p~~~~~l~~~Lk~~al~GtP~qAK~Avr 173 (602)
..+++..+.++ - .+..|.+=+.+.++.+...+|++|..+. .|.+...+.+-+++.-...+|--.|-|+-
T Consensus 93 ~~~~~~~~e~i-L--v~Nsl~kDl~~~N~~iR~lALRtL~~I~--------~~~m~~~l~~~lk~~L~d~~pyVRk~A~l 161 (355)
T 3tjz_B 93 KEMSCIAEDVI-I--VTSSLTKDMTGKEDSYRGPAVRALCQIT--------DSTMLQAIERYMKQAIVDKVPSVSSSALV 161 (355)
T ss_dssp HHHTTTSSCGG-G--GHHHHHHHHHSSCHHHHHHHHHHHHHHC--------CTTTHHHHHHHHHHHHTCSSHHHHHHHHH
T ss_pred HHhCCCHHHHH-H--HHHHHHhhcCCCcHhHHHHHHHHHhcCC--------CHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 34444444444 3 4555555555677888888999999997 22233456777777777888988889999
Q ss_pred HHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCC-CcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHH
Q psy2712 174 CLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSP-NYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVK 252 (602)
Q Consensus 174 ~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~-~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk 252 (602)
|...+++... +.....++.+.+.+...++ -...+++.|.+|.+..+ . ...++|.
T Consensus 162 ~~~kL~~~~p----------------e~v~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--------~-a~~kLv~ 216 (355)
T 3tjz_B 162 SSLHLLKCSF----------------DVVKRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--------L-AVSKMIS 216 (355)
T ss_dssp HHHHHTTTCH----------------HHHHTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--------H-HHHHHHH
T ss_pred HHHHHhccCH----------------HHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--------H-HHHHHHH
Confidence 8878877653 3334555555444533232 13345666667665431 1 2334444
Q ss_pred HHhccCCccccccCCCCccCCCCCHHHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHH
Q psy2712 253 ELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMA 332 (602)
Q Consensus 253 ~lLl~~~~~~~~~~~~W~~d~~l~~e~~aKi~aLK~lvn~Ll~~~~~~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ks 332 (602)
.+- .. + - -++-.+ +.-||++...+.. +++..+++.+++|..++.+.|+
T Consensus 217 ~l~-~~---~--l---------~~~~~q--~~llr~l~~~~~~--d~~~~~~~~~~~l~~~L~~~~~------------- 264 (355)
T 3tjz_B 217 KFT-RH---G--L---------KSPFAY--CMMIRVASRQLED--EDGSRDSPLFDFIESCLRNKHE------------- 264 (355)
T ss_dssp HHH-SS---C--C---------SCHHHH--HHHHHHHTCC-------------------CCCCCSSH-------------
T ss_pred HHh-cC---C--C---------cChHHH--HHHHHHHHHhccc--cchhhHHHHHHHHHHHHcCCCh-------------
Confidence 331 10 0 0 012223 3346665433221 1124567888888877654332
Q ss_pred HHHHHHHHHHhhhhc
Q psy2712 333 WMRLSAGCAMLKICE 347 (602)
Q Consensus 333 rLRL~Aa~~lLKLA~ 347 (602)
-.-+.|+++++.|..
T Consensus 265 aVvyEa~k~I~~l~~ 279 (355)
T 3tjz_B 265 MVVYEAASAIVNLPG 279 (355)
T ss_dssp HHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHhccC
Confidence 134788999988754
No 76
>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A
Probab=29.75 E-value=94 Score=32.00 Aligned_cols=122 Identities=13% Similarity=0.051 Sum_probs=78.0
Q ss_pred cccc-ccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhh---CCC---CCCCchHHHHHHHhcccCCc
Q psy2712 50 PHRL-TGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYV---YPC---HFMQQSSIQALLKMLTIEDE 122 (602)
Q Consensus 50 pl~~-N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~---~P~---lFk~~e~~~~L~~ll~~~d~ 122 (602)
+-+. ..-.|+.|++.+... .. . ..-+..+.+.-.|..+|.+ .|. .+.....+..|+.++...+.
T Consensus 207 ~~i~~~~Gai~~Lv~lL~~~---~~-~-----~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~~~~~ 277 (354)
T 3nmw_A 207 ADICAVDGALAFLVGTLTYR---SQ-T-----NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSL 277 (354)
T ss_dssp HHHHHSTTHHHHHHHHTTCC---CS-S-----SCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTTCSCH
T ss_pred HHHHHhcCcHHHHHHHhccC---CC-c-----ccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHcCCCh
Confidence 3344 566788888887532 11 0 0012456677888888862 433 11123368889999987777
Q ss_pred cchHHHHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCCC
Q psy2712 123 IVAPLVFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDS 182 (602)
Q Consensus 123 ~v~e~~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~~ 182 (602)
.+.+.+..+|.+++.. .++.... ...-.++.|.++-..|+++.-+.|+.+|..++...
T Consensus 278 ~v~~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~ 336 (354)
T 3nmw_A 278 TIVSNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANR 336 (354)
T ss_dssp HHHHHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence 7888899999998732 1222211 22346889999988999988888888886555543
No 77
>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}
Probab=29.64 E-value=1.3e+02 Score=34.73 Aligned_cols=139 Identities=14% Similarity=0.203 Sum_probs=83.3
Q ss_pred hhHHHHHHHhhhcccccccccccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHH-HHHHHHHHHhhCCCC-CCC---c
Q psy2712 33 EDLLTFVKERTLDKKVMPHRLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGER-GLKLLVMLSYVYPCH-FMQ---Q 107 (602)
Q Consensus 33 ~~l~~~~~~~~~~kk~spl~~N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~-a~eLL~~IS~~~P~l-Fk~---~ 107 (602)
+.....+.-=+.+++++-.+...-.++.||.++... .. . ....... +.-|-.......|.+ |.+ -
T Consensus 475 e~A~~aL~nLS~d~~~R~~lvqqGal~~LL~lL~s~---~~---~----~~~~k~~AA~ALArLlis~np~~~f~~~~~~ 544 (778)
T 3opb_A 475 QQVVRIIYNITRSKNFIPQLAQQGAVKIILEYLANK---QD---I----GEPIRILGCRALTRMLIFTNPGLIFKKYSAL 544 (778)
T ss_dssp HHHHHHHHHHHTSGGGHHHHHHTTHHHHHHHHTTCC-------------CCHHHHHHHHHHHHHHHTSCHHHHSSSSCST
T ss_pred HHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHhcC---CC---c----chHHHHHHHHHHHHHHhcCCHHHHcCCCccc
Confidence 334444433356777788888888899999998642 11 0 0112333 333444343555554 321 2
Q ss_pred hHHHHHHHhcccC-C-c---------c----chHHHHHHHHhhccCCCC-chhh-hhHHh--HHHHHHHHHHhcCCHHHH
Q psy2712 108 SSIQALLKMLTIE-D-E---------I----VAPLVFSVLSFLGKYRPL-GEVF-KEEMK--QLVPICQDMIEKGTPKQA 168 (602)
Q Consensus 108 e~~~~L~~ll~~~-d-~---------~----v~e~~Lk~La~~~k~k~~-~~~~-p~~~~--~l~~~Lk~~al~GtP~qA 168 (602)
+.++-|++++... + . . ..+ +|.+|++++..... .+.. ..+.+ ..++.|.++...+++..-
T Consensus 545 ~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~fe-AL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~Vr 623 (778)
T 3opb_A 545 NAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYE-ALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQ 623 (778)
T ss_dssp THHHHHHHTSCCSSSCSSCC---CCCCCHHHHHH-HHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHH
T ss_pred cchHHHHHHcCCCCCcccccccccccccHHHHHH-HHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHH
Confidence 5899999999831 1 1 1 234 99999999844210 0111 11222 478999999999999888
Q ss_pred HHHHHHHHHhcCCC
Q psy2712 169 KQAIRCLYKNLGDS 182 (602)
Q Consensus 169 K~Avr~L~a~~~~~ 182 (602)
+.|+.+|+.++.+.
T Consensus 624 rAA~elI~NL~~~~ 637 (778)
T 3opb_A 624 RSTLELISNMMSHP 637 (778)
T ss_dssp HHHHHHHHHHHTSG
T ss_pred HHHHHHHHHHhCCc
Confidence 88889996666544
No 78
>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0
Probab=26.67 E-value=31 Score=31.12 Aligned_cols=69 Identities=10% Similarity=0.020 Sum_probs=48.6
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhcccCCccchHHHHH
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTIEDEIVAPLVFS 130 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~~d~~v~e~~Lk 130 (602)
+.++..|-++++.. +.+..-.|+.||..+.+.|...|.. .+.+++|++++...++.|.+.+|.
T Consensus 41 k~a~rai~Krl~~~-------------n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~ 107 (140)
T 3ldz_A 41 KDCLRSIMRRVNHK-------------DPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKA 107 (140)
T ss_dssp HHHHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-------------ChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHH
Confidence 45566666666421 2245667999999999999999884 778888888876556677776666
Q ss_pred HHHhhc
Q psy2712 131 VLSFLG 136 (602)
Q Consensus 131 ~La~~~ 136 (602)
.+..-+
T Consensus 108 li~~W~ 113 (140)
T 3ldz_A 108 LMVEWT 113 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665443
No 79
>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*
Probab=26.40 E-value=43 Score=30.72 Aligned_cols=54 Identities=15% Similarity=0.100 Sum_probs=39.9
Q ss_pred CchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc------CCccchHHHHHHHHhhc
Q psy2712 83 GTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI------EDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 83 ~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~------~d~~v~e~~Lk~La~~~ 136 (602)
....-.|+.||..+.+.|...|.. .+.+++|++++.. .++.|-+.+|..+..-+
T Consensus 62 ~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~ 125 (149)
T 3g2s_A 62 EWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT 125 (149)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence 346678999999999999999866 7788888888863 24456666666665444
No 80
>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*
Probab=25.76 E-value=76 Score=29.59 Aligned_cols=69 Identities=16% Similarity=0.094 Sum_probs=45.4
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhccc------CCccc
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTI------EDEIV 124 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~------~d~~v 124 (602)
+.++..|.++++.. +....-.|+.||..+.+.|...|.. .+.+++|++++.. .++.|
T Consensus 49 k~A~ral~krl~~~-------------n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~V 115 (171)
T 1juq_A 49 QIAVRLLAHKIQSP-------------QEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKV 115 (171)
T ss_dssp HHHHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHH
T ss_pred HHHHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHH
Confidence 44566666666421 3346678999999999999988886 6678888888752 12445
Q ss_pred hHHHHHHHHhhc
Q psy2712 125 APLVFSVLSFLG 136 (602)
Q Consensus 125 ~e~~Lk~La~~~ 136 (602)
-+.+|..+..-+
T Consensus 116 k~kil~li~~W~ 127 (171)
T 1juq_A 116 KTKVIELLYSWT 127 (171)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
No 81
>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2
Probab=24.98 E-value=50 Score=30.08 Aligned_cols=69 Identities=17% Similarity=0.085 Sum_probs=46.5
Q ss_pred cCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHhhCCCCCCC----chHHHHHHHhcccC------Cccc
Q psy2712 55 GNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQ----QSSIQALLKMLTIE------DEIV 124 (602)
Q Consensus 55 ~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~~~P~lFk~----~e~~~~L~~ll~~~------d~~v 124 (602)
+.++..|.++++.. +....-.|+.||..+.+.|...|.. .+.+++|++++... ++.|
T Consensus 37 k~a~rai~krl~~~-------------n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~V 103 (148)
T 1mhq_A 37 THAPWLLAHKIQSP-------------QEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKV 103 (148)
T ss_dssp HHHHHHHHHHHTCS-------------SHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHH
T ss_pred HHHHHHHHHHhcCC-------------CHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHH
Confidence 45566666666421 3346678999999999999999965 77888888888632 3455
Q ss_pred hHHHHHHHHhhc
Q psy2712 125 APLVFSVLSFLG 136 (602)
Q Consensus 125 ~e~~Lk~La~~~ 136 (602)
-+.+|..+..-+
T Consensus 104 k~kil~li~~W~ 115 (148)
T 1mhq_A 104 KGRVIEILFSWT 115 (148)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 555555555433
No 82
>4atg_A TAF6; transcription, TFIID; HET: NHE; 1.89A {Antonospora locustae}
Probab=24.85 E-value=1.9e+02 Score=27.72 Aligned_cols=152 Identities=14% Similarity=0.087 Sum_probs=88.7
Q ss_pred hhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHhccCCccccccCCCCccCCCCCHH
Q psy2712 199 VDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNE 278 (602)
Q Consensus 199 ~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe~~~~~iI~~fIvk~lLl~~~~~~~~~~~~W~~d~~l~~e 278 (602)
..+|.+|.+.++. +....+|++|.. +|.+-. -.-. .+.||..++-.+-. +
T Consensus 10 q~yf~~It~a~~~------~~r~~aL~sL~~----D~gL~~-LlPy-f~~fI~~~v~~nl~--------~---------- 59 (196)
T 4atg_A 10 QLYFDKILSMIKS------DMKDIAIECLEK----ESGLQQ-LVPY-FIQHISELILKSFK--------E---------- 59 (196)
T ss_dssp HHHHHHHHHHHTS------TTHHHHHHHHHH----CSSCTT-THHH-HHHHHHHHHHHCTT--------C----------
T ss_pred HHHHHHHHHHHHh------HHHHHHHHHHhc----CCChhh-hHHH-HHHHHHHHHHhccC--------C----------
Confidence 5789999998854 234444554432 555422 1213 67888777643321 0
Q ss_pred HHHHHHHHHHHHHHhhcccch--hhhHHHHHHHHHHHHhhcCcccCCCCCCHHHHHHHHHHHHHHHhhhhcccCcCCcCC
Q psy2712 279 VRCKMEGMKMMARWLLGLKAH--KESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYS 356 (602)
Q Consensus 279 ~~aKi~aLK~lvn~Ll~~~~~--~~~a~~v~kLL~~lL~~~Gel~~~~~t~~~~ksrLRL~Aa~~lLKLA~~~~~~~~I~ 356 (602)
..++..+=-|++.|+....- +.....++--+.+.+.+. .+ ++. .||=.||.-|=.+|+. |+.
T Consensus 60 -l~~L~~lm~~~~ALl~N~~l~lepYlH~LipsvLtCll~k-~l------~~~---~LRd~AA~lL~~I~~~--~~~--- 123 (196)
T 4atg_A 60 -AEVLKTCIALYFSLIKNKHVFIDPYLHQILPSLLTCVIGK-SI------VDD---DVRKMSADIVKYIYDT--YSR--- 123 (196)
T ss_dssp -HHHHHHHHHHHHHHHHCTTCCCGGGHHHHHHHHHHHHHCT-TC------CCH---HHHHHHHHHHHHHHHH--HTT---
T ss_pred -HHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHHhc-cc------CHH---HHHHHHHHHHHHHHHH--hCc---
Confidence 11333333345555443321 122333333333444321 11 222 8999999999999984 553
Q ss_pred HHHHHHHHHHHhcCchHHHHHHHHHHHHhhccCCCCCCCChhhHHHHhhccccch
Q psy2712 357 PEQFYNLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALGGLEEE 411 (602)
Q Consensus 357 ~~~f~~La~lvqD~~~~VR~~Fl~KL~k~L~~~~~~~~Lp~rf~~l~fL~A~EPd 411 (602)
..+.++.+..+.|.+.+.. |.+.++..|-++..|.+..++
T Consensus 124 -------------~y~~L~~RI~~tl~k~l~d--p~~~l~t~YGAi~GL~~lG~~ 163 (196)
T 4atg_A 124 -------------SYKTLAPRVLKTLKGVWMD--PNRSEDSQYGALYCLSILSKN 163 (196)
T ss_dssp -------------TSTTHHHHHHHHHHHHHTC--TTSCHHHHHHHHHHHHHHCHH
T ss_pred -------------cCchHHHHHHHHHHHHHcC--CCCChHHHHHHHHHHHHhHHH
Confidence 3345667777788888876 556799999999999999885
No 83
>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}
Probab=24.59 E-value=1.2e+02 Score=32.67 Aligned_cols=117 Identities=15% Similarity=0.081 Sum_probs=74.1
Q ss_pred ccCcHHHHHHHhhhhcCCCCcccccCCCCCchhHHHHHHHHHHHh---hCCCC---CCCchHHHHHHHhcccCCccchHH
Q psy2712 54 TGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSY---VYPCH---FMQQSSIQALLKMLTIEDEIVAPL 127 (602)
Q Consensus 54 N~ssI~~Li~~v~~~~~g~~~~ee~~~~~~~~~~~a~eLL~~IS~---~~P~l---Fk~~e~~~~L~~ll~~~d~~v~e~ 127 (602)
..-.|+.|++.+... .. . ..-+..+.|.-.|..||. ..|.. +.....+..|+.++...+..+.+.
T Consensus 328 ~~Gal~~Lv~LL~~~---~~-~-----~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i~~Lv~LL~~~~~~v~~~ 398 (458)
T 3nmz_A 328 VDGALAFLVGTLTYR---SQ-T-----NTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLKSHSLTIVSN 398 (458)
T ss_dssp STTHHHHHHHHTTCC---CS-S-----STTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHSSCSCHHHHHH
T ss_pred hcCcHHHHHHHhcCC---CC-c-----chHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccHHHHHHHHcCCChHHHHH
Confidence 566777777777532 10 0 000246667788888886 34431 111236778899988777777788
Q ss_pred HHHHHHhhccCCCCchhhhh-HHhHHHHHHHHHHhcCCHHHHHHHHHHHHHhcCC
Q psy2712 128 VFSVLSFLGKYRPLGEVFKE-EMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGD 181 (602)
Q Consensus 128 ~Lk~La~~~k~k~~~~~~p~-~~~~l~~~Lk~~al~GtP~qAK~Avr~L~a~~~~ 181 (602)
+..+|++++.. .++.... ...-.++.|.++-..|+++..+.|..+|..++.+
T Consensus 399 A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~ 451 (458)
T 3nmz_A 399 ACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMAN 451 (458)
T ss_dssp HHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence 99999988732 1222221 2234678899988899998888888888555443
No 84
>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B
Probab=23.59 E-value=2.7e+02 Score=31.68 Aligned_cols=145 Identities=8% Similarity=-0.044 Sum_probs=77.1
Q ss_pred hHHHHHHHHHHHhhCCC-CCCCchHHHHHHHhc----ccCCccchHHHHHHHHhhccCCCCchh-hhhHHhHHHHHHHHH
Q psy2712 86 GERGLKLLVMLSYVYPC-HFMQQSSIQALLKML----TIEDEIVAPLVFSVLSFLGKYRPLGEV-FKEEMKQLVPICQDM 159 (602)
Q Consensus 86 ~~~a~eLL~~IS~~~P~-lFk~~e~~~~L~~ll----~~~d~~v~e~~Lk~La~~~k~k~~~~~-~p~~~~~l~~~Lk~~ 159 (602)
...+.++|..++...|. ++.. ..+.+...+ ...+....|.++.++..++.. ..+. .+ ....+++.|..+
T Consensus 424 r~~~~~~L~~~~~~~~~~~l~~--~~~~l~~~l~~~~~~~~w~~~eaal~al~~i~~~--~~~~~~~-~l~~l~~~l~~l 498 (963)
T 2x19_B 424 RVDISDTLMYVYEMLGAELLSN--LYDKLGRLLTSSEEPYSWQHTEALLYGFQSIAET--IDVNYSD-VVPGLIGLIPRI 498 (963)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHH--HHHHHHHHHHTCCCSCCHHHHHHHHHHHHHHTTS--CCSSCCS-HHHHHHHHGGGS
T ss_pred HHHHHHHHHHHHHHccHHHHHH--HHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHhh--cCchhhH-HHHHHHHHHHhC
Confidence 34567888888887762 2222 222333333 223445678888888888732 2211 12 112234433333
Q ss_pred HhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCCCCCCcchHHHHHHHHHHhCCCCch
Q psy2712 160 IEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFP 239 (602)
Q Consensus 160 al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~~s~~l~t~L~sLg~Ia~~aP~~fe 239 (602)
+. +.|+-..-|..++...+.--... ..++..++..+...|.. ..-...+..+|..|++-++..+.
T Consensus 499 ~~-~~~~vr~~~~~~l~~~~~~l~~~-------------~~~l~~vl~~l~~~l~~-~~V~~~A~~al~~l~~~~~~~l~ 563 (963)
T 2x19_B 499 SI-SNVQLADTVMFTIGALSEWLADH-------------PVMINSVLPLVLHALGN-PELSVSSVSTLKKICRECKYDLP 563 (963)
T ss_dssp CC-CSHHHHHHHHHHHHHTHHHHHHC-------------HHHHTTTHHHHHHHTTC-GGGHHHHHHHHHHHHHHTGGGCT
T ss_pred CC-CcHHHHHHHHHHHHHHHHHHHhC-------------HHHHHHHHHHHHHHhCC-chHHHHHHHHHHHHHHHHHHHHH
Confidence 32 45665555566663322110000 24566677777777742 22234456778888888888888
Q ss_pred hhHHHHHHHHHH
Q psy2712 240 AVIKNTVSRKIV 251 (602)
Q Consensus 240 ~~~~~iI~~fIv 251 (602)
..... |...+.
T Consensus 564 p~~~~-il~~l~ 574 (963)
T 2x19_B 564 PYAAN-IVAVSQ 574 (963)
T ss_dssp TTHHH-HHHHHH
T ss_pred hhHHH-HHHHHH
Confidence 78766 555553
No 85
>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}
Probab=22.46 E-value=1.2e+02 Score=34.94 Aligned_cols=138 Identities=12% Similarity=0.107 Sum_probs=71.2
Q ss_pred chhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhc---ccC--CccchHHHHHHHHhhccCC-CCchhhhhHHhHHHHHHH
Q psy2712 84 TAGERGLKLLVMLSYVYPCHFMQQSSIQALLKML---TIE--DEIVAPLVFSVLSFLGKYR-PLGEVFKEEMKQLVPICQ 157 (602)
Q Consensus 84 ~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll---~~~--d~~v~e~~Lk~La~~~k~k-~~~~~~p~~~~~l~~~Lk 157 (602)
...+.+.-.|..|+..++.--.. ++..++..+ ..+ .+.|-..++.++..++.|- ..++.++.....+...|
T Consensus 479 ~~~eaal~~l~~iae~~~~~~~~--~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~~vl~~l~~~l- 555 (971)
T 2x1g_F 479 TKLEACIYSFQSVAEHFGGEEKR--QIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIPPAINLLVRGL- 555 (971)
T ss_dssp HHHHHHHHHHHHTTTC------C--HHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHhhcChhhhH--HHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh-
Confidence 35666777777777766654444 666666654 222 5666677888888776541 11222322222223222
Q ss_pred HHHhcCCHHHHHHHHHHHHHhcCCCcccccccccccCccchhhHHHHHHHHHhhcCCC---CCCCcchHHHHHHHHHHhC
Q psy2712 158 DMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTP---DSPNYRTAIIALGHIAYNM 234 (602)
Q Consensus 158 ~~al~GtP~qAK~Avr~L~a~~~~~~~~~~~~~~~~~~~~~~~~~~~Iie~l~~~L~~---~s~~l~t~L~sLg~Ia~~a 234 (602)
. |+-+.+|+.++..++.+-. ..+..++..|++.+..-+.. +.......+.++|.++...
T Consensus 556 ----~--~~v~~~A~~al~~l~~~~~------------~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~ 617 (971)
T 2x1g_F 556 ----N--SSMSAQATLGLKELCRDCQ------------LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLL 617 (971)
T ss_dssp ----H--SSCHHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTS
T ss_pred ----C--hHHHHHHHHHHHHHHHHHH------------HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhC
Confidence 1 5444455555544442221 11246777777777655542 2334666788999999876
Q ss_pred C-CCchhhH
Q psy2712 235 P-NKFPAVI 242 (602)
Q Consensus 235 P-~~fe~~~ 242 (602)
| +.+....
T Consensus 618 ~~~~~~~~~ 626 (971)
T 2x1g_F 618 RPEEIPKYL 626 (971)
T ss_dssp CTTHHHHHH
T ss_pred CHHHHHHHH
Confidence 6 3333333
No 86
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=22.43 E-value=62 Score=32.48 Aligned_cols=51 Identities=14% Similarity=0.049 Sum_probs=38.9
Q ss_pred CCchhHHHHHHHHHHHhhCCCCCCCchHHHHHHHhcccCCccchHHHHHHHHhhc
Q psy2712 82 PGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLG 136 (602)
Q Consensus 82 ~~~~~~~a~eLL~~IS~~~P~lFk~~e~~~~L~~ll~~~d~~v~e~~Lk~La~~~ 136 (602)
.+...+.++++|..+..++|. ...++.|.+.++..+..+-+.+|..+..+-
T Consensus 145 k~~vR~~~r~il~~l~~v~~~----~~v~~~l~~g~ksKN~R~R~e~l~~l~~li 195 (266)
T 2of3_A 145 KDNMRTSVRDIVNVLSDVVGP----LKMTPMLLDALKSKNARQRSECLLVIEYYI 195 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHCH----HHHHHHHHHGGGCSCHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHCCH----HHHHHHHHHHHccCCHHHHHHHHHHHHHHH
Confidence 556788899999999988754 336777888777778877777888877663
Done!