RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2712
(602 letters)
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 63.7 bits (154), Expect = 1e-10
Identities = 62/484 (12%), Positives = 149/484 (30%), Gaps = 112/484 (23%)
Query: 5 DTDEN-VRY---EVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKV-MPHRLTGN--A 57
D + +Y ++++ +FD + + + + +D + ++G
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRL 67
Query: 58 IPILIS--------YVDDCL--NHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQ 107
L+S +V++ L N+ L+ + E+ ++ Y+
Sbjct: 68 FWTLLSKQEEMVQKFVEEVLRINYKFLMSPI------KTEQRQPSMMTRMYIE-QRDRLY 120
Query: 108 SSIQALLKM-LTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEM----KQ-LV-PICQD-- 158
+ Q K ++ + + L + RP V + + K + +C
Sbjct: 121 NDNQVFAKYNVSRLQPYLK-----LRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK 175
Query: 159 -------------MIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDI 205
+ +P+ + ++ L + ++T S++ I
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT-----SRSDHSSNIKLRIHSI 230
Query: 206 LDKVKMNLTPDSPNYRTAIIALGHI-------AYNMPNKFPAVIKNTVSRKIVKELLIKE 258
+++ L S Y ++ L ++ A+N+ K ++ T +++ L
Sbjct: 231 QAELRRLLK--SKPYENCLLVLLNVQNAKAWNAFNLSCK---ILLTTRFKQVTDFLSAAT 285
Query: 259 TEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHK--ESAQKTFRMLNAVIVN 316
T D E ++ ++L + T ++I
Sbjct: 286 TTHISLDHHSMTLTPD---------EVKSLLLKYL-DCRPQDLPREVLTTNPRRLSII-- 333
Query: 317 KGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPE--QFYN------------ 362
+ ++ + W + C L + + E + ++
Sbjct: 334 -AESIRDGLATWDN--WKHV--NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIP 388
Query: 363 ---LSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGF-YALGGLEEEKKLKMST 418
LS + D + + NKLHK +L K ++ + E K+K+
Sbjct: 389 TILLSLIWFDVIKSDVMVVVNKLHK---YSLVEK----QPKESTISIPSIYLELKVKLEN 441
Query: 419 EKAL 422
E AL
Sbjct: 442 EYAL 445
Score = 59.5 bits (143), Expect = 3e-09
Identities = 70/493 (14%), Positives = 150/493 (30%), Gaps = 127/493 (25%)
Query: 137 KYRPLGEVFKEEMKQLVPICQDMIE--KG--TPKQAKQAIRCLYKNLGDSYTIEVMDENS 192
+Y+ + VF++ C+D+ + K + ++ I G +
Sbjct: 17 QYKDILSVFEDAFVDNFD-CKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75
Query: 193 ENGVRTVDLFVD---------ILDKVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIK 243
E V FV+ ++ +K S R I + YN F K
Sbjct: 76 EE---MVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL-YNDNQVFA---K 128
Query: 244 NTVSRKIVKELLIKETEESYQYKK-DWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKES 302
VSR + +K + + + V ++G+ G
Sbjct: 129 YNVSRL---QPYLKLRQALLELRPAKNVL-----------IDGVL-------G------- 160
Query: 303 AQKTFRMLNAVIVNKGDLLQSDKMSKQ---EMAWMRLSAGC-------AMLKICEQKGVG 352
+ KT + D+ S K+ + ++ W+ L + K+ Q
Sbjct: 161 SGKT------WVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN 212
Query: 353 DQYSPEQFYNLSRLLIDEVPEVREIFANKLHKG----LGRNLPNK---------CLPL-- 397
+ N+ + E+R + +K ++ L N+ N C L
Sbjct: 213 WTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLT 271
Query: 398 -------DFMGFYALGGLEEEKKLK-MSTEKALAQLPNFLPDFMLVFAIP--VLTHTPAY 447
DF+ + + ++ ++ + L +L +P VLT P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD--CRPQDLPREVLTTNPRR 329
Query: 448 TSNEAVDELLVMRACLWFILEPLLTQPSDSFSSLFFKEMIDQMKNCKDALNPDD------ 501
S + E + W D++ + ++ +++ + L P +
Sbjct: 330 LS--IIAESIRDGLATW-----------DNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 502 ------ENTNNVSA--LDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALD 553
+ ++ L L + + + +N S ++ E+T ++ ++
Sbjct: 377 RLSVFPPSA-HIPTILLSLIWFDVIKSDVMVVVNKLHKY---SLVEKQPKESTISIPSIY 432
Query: 554 LNGDENTNNVSAL 566
L N AL
Sbjct: 433 LELKVKLENEYAL 445
Score = 51.4 bits (122), Expect = 8e-07
Identities = 53/350 (15%), Positives = 107/350 (30%), Gaps = 115/350 (32%)
Query: 188 MD-ENSENGVRTVDLFVDILDKVKMNL----TPDSPNYRTAIIALGHIAYNMPNKFPAVI 242
MD E E+ + D+ D N D P
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMP------------------------ 42
Query: 243 KNTVSRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEG-MKMMARWLLGLKAHKE 301
K+ +S++ + +++ + S + W V+ +E +++ ++L+ E
Sbjct: 43 KSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-PIKTE 101
Query: 302 SAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFY 361
Q + + + D L +D ++ Y
Sbjct: 102 QRQPSMMTRM--YIEQRDRLYND---------------------------NQVFAK---Y 129
Query: 362 NLSRLLIDEVPEVREIFANKLHKGLGRNLPNKCLPLDFMGFYALG-GLEEEKK--LKMST 418
N+SR + KL + L P K + +D + G G K + +
Sbjct: 130 NVSR--LQPY--------LKLRQALLELRPAKNVLIDGVL----GSG-----KTWVALDV 170
Query: 419 EKALAQLPNFLPDFMLVFAIPV-LTHTPAYTSNEAVDELLVMRACLWFILEPLLTQPSDS 477
+ DF +F + + ++P + +L M L + ++P T SD
Sbjct: 171 CLSYKVQCKM--DFK-IFWLNLKNCNSP--------ETVLEMLQKLLYQIDPNWTSRSDH 219
Query: 478 FSSL-------------FFKEMIDQMKNCKDALNPDD-ENTNNVSALDLN 513
S++ K +NC L + +N +A +L+
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSK--PYENCLLVL--LNVQNAKAWNAFNLS 265
Score = 35.2 bits (80), Expect = 0.076
Identities = 47/355 (13%), Positives = 113/355 (31%), Gaps = 124/355 (34%)
Query: 9 NVRY-EVVTA-------IVTTARRD---FDIVSSS--------EDLLTFVKERTLD---K 46
NV+ + A ++TT R D +S++ +T + K
Sbjct: 252 NVQNAKAWNAFNLSCKILLTT--RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLK 309
Query: 47 KV------MPHR-LTGNAIPILISYVDDCL-NHGNLIDELGLHPGTAGERGLKLLVMLSY 98
+ +P LT N P +S + + + + D H ++ L ++ S
Sbjct: 310 YLDCRPQDLPREVLTTN--PRRLSIIAESIRDGLATWDNW-KHVNC--DK-LTTIIESSL 363
Query: 99 VYPCHFMQQSSIQALLKMLTI--EDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPIC 156
+ ++ + + + L++ + ++ S++ +V K ++ +V
Sbjct: 364 ----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--------WFDVIKSDVMVVVNKL 411
Query: 157 QD--MIEKGTPKQAKQAIRCLY--------------KNLGDSYTIEVMDENSENGVRTVD 200
++EK PK++ +I +Y +++ D Y I ++ + +D
Sbjct: 412 HKYSLVEKQ-PKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD 470
Query: 201 -------------------------LFVDI--------------------------LDKV 209
+F+D L
Sbjct: 471 QYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFY 530
Query: 210 KMNLTPDSPNYRTAIIALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQ 264
K + + P Y + A+ +P +I + + +++ L+ E E ++
Sbjct: 531 KPYICDNDPKYERLVNAILD---FLPKIEENLICSKYTD-LLRIALMAEDEAIFE 581
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.0 bits (137), Expect = 2e-08
Identities = 81/475 (17%), Positives = 144/475 (30%), Gaps = 161/475 (33%)
Query: 62 ISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQALLKMLTIED 121
+ YV + P G+ L + L+ + +++ + I AL L E+
Sbjct: 65 LGYVSSLV-----------EPSKVGQFDQVLNLCLTE-FENCYLEGNDIHALAAKLLQEN 112
Query: 122 EIVAPLVFSVLSFLGKY--------RP--------LGEVFKEEMKQLVPIC--QDMIEKG 163
+ ++ Y RP L E QLV I Q G
Sbjct: 113 DTTLVKTKELIK---NYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-----G 164
Query: 164 TPKQAKQAIRCLYKNLGDSYT------IEVMDEN----SENGVRTVDLFVDILDKVK--- 210
+ +R LY +Y I+ E + +F L+ ++
Sbjct: 165 NTDDYFEELRDLY----QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 211 -MNLTPDSPNYRTA--------IIALGHIA-------YNMPNKFPAVIK--NTVSRKIVK 252
+ TPD + +I L H + P + + +K S+ +V
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFT-PGELRSYLKGATGHSQGLVT 279
Query: 253 ELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWL--LGLKAHKESAQKTFRML 310
+ I ET W E ++ L +G++ ++ + L
Sbjct: 280 AVAIAET-------DSW---ESF-------FVSVRKAITVLFFIGVRCYEAYPNTS---L 319
Query: 311 NAVIVNKGDLLQSDKMSKQEMAWMRLSAG--CAMLKICEQKGVGDQYSPEQFYNLSRLLI 368
I+ D + E G ML I + + EQ +
Sbjct: 320 PPSIL-------EDSLENNE--------GVPSPMLSI---SNL----TQEQVQDYVNKTN 357
Query: 369 DEVPEVREIFANKLHKGLGRNL----PNKCLPLDFMGFY-------ALGGLE------EE 411
+P +++ + L G +NL P P G A GL+ E
Sbjct: 358 SHLPAGKQVEIS-LVNG-AKNLVVSGP----PQSLYGLNLTLRKAKAPSGLDQSRIPFSE 411
Query: 412 KKLKMSTEKALAQLPNFLPDFMLVFAIPVLTHTPAY--TSNEAVDELLVMRACLW 464
+KLK S FLP V + P H+ +++ +++ LV +
Sbjct: 412 RKLKFSNR--------FLP----VAS-PF--HSH-LLVPASDLINKDLVKNNVSF 450
Score = 45.4 bits (107), Expect = 5e-05
Identities = 37/238 (15%), Positives = 78/238 (32%), Gaps = 80/238 (33%)
Query: 1 MRQHDTDENVRYEVVTAIVTTARRDFDIVSSSEDLLTFVKERTLDKKVMPHRLTGNAIP- 59
+ + D ++ E + + + S + LL+ T P
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSY-TFRSEKGLLS---------------ATQFTQPA 1735
Query: 60 -ILISYVDDCLNHGNLIDELGLHPGTA-------GERGLKLLVMLSYVYPCHFMQQSSIQ 111
L+ + GL P A GE Y +++
Sbjct: 1736 LTLMEKA--AFE---DLKSKGLIPADATFAGHSLGE------------Y-------AALA 1771
Query: 112 ALLKMLTIEDEIVAPLVFSVLSFLGKYR--------PLGEVFKEE--MKQLVPICQDMIE 161
+L +++IE + +VF YR P E+ + M + P +
Sbjct: 1772 SLADVMSIES--LVEVVF--------YRGMTMQVAVPRDELGRSNYGMIAINP--GRVAA 1819
Query: 162 KGTPKQAKQAIRCLYKNLGDSYTIEVMDENSEN------G-VRTVDLFVDILDKVKMN 212
+ + + + + K G + +E+++ N EN G +R +D ++L+ +K+
Sbjct: 1820 SFSQEALQYVVERVGKRTG--WLVEIVNYNVENQQYVAAGDLRALDTVTNVLNFIKLQ 1875
>2qih_A Protein USPA1; trimeric, parallel alpha-helical coiled-coil, cell
adhesion; 1.90A {Moraxella catarrhalis}
Length = 157
Score = 41.9 bits (97), Expect = 1e-04
Identities = 13/93 (13%), Positives = 32/93 (34%)
Query: 502 ENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTN 561
NT+ ++ +L EN + +EN + ++ + + ++ L +
Sbjct: 16 ANTDRIATAELGIAENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVAR 75
Query: 562 NVSALDLNGDENTNNVSALDLNGDENTNNVSAL 594
V N +++ + N N+ L
Sbjct: 76 AVGNNTQGVATNKADIAKNQADIANNIKNIYEL 108
Score = 40.7 bits (94), Expect = 3e-04
Identities = 11/93 (11%), Positives = 32/93 (34%)
Query: 501 DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT 560
+ ++ L + V N +++ + N N+ L D+++
Sbjct: 57 QLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNIKNIYELAQQQDQHS 116
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSA 593
+++ L NT+ ++ D + ++
Sbjct: 117 SDIKTLAKVSAANTDRIAKNKAEADASFETLTK 149
Score = 40.7 bits (94), Expect = 3e-04
Identities = 14/101 (13%), Positives = 37/101 (36%)
Query: 501 DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT 560
+EN + ++ + + ++ L + V N +++ + N
Sbjct: 43 NENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKADIAKNQADIANNI 102
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDES 601
N+ L D++++++ L NT+ ++ D S
Sbjct: 103 KNIYELAQQQDQHSSDIKTLAKVSAANTDRIAKNKAEADAS 143
Score = 40.4 bits (93), Expect = 4e-04
Identities = 12/93 (12%), Positives = 33/93 (35%)
Query: 502 ENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTN 561
EN + +EN + ++ + + ++ L + V N
Sbjct: 30 ENKKDAQIAKAQANENKDGIAKNQADIQLHDKKITNLGILHSMVARAVGNNTQGVATNKA 89
Query: 562 NVSALDLNGDENTNNVSALDLNGDENTNNVSAL 594
+++ + N N+ L D++++++ L
Sbjct: 90 DIAKNQADIANNIKNIYELAQQQDQHSSDIKTL 122
>3h09_A IGA1 protease, immunoglobulin A1 protease; serine protease, beta
helix, hydrolase, M protease, secreted, transmembrane,
virulence; 1.75A {Haemophilus influenzae}
Length = 989
Score = 36.6 bits (83), Expect = 0.023
Identities = 18/103 (17%), Positives = 34/103 (33%), Gaps = 4/103 (3%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNN 562
N +L + A N + + V + N+ +D N
Sbjct: 440 KGENKGSLKVGDGTVILKQQADANNKVKAFSQVGIVSGRSTVVLNDDKQVDPNSIYFGFR 499
Query: 563 VSALDLNGDENT-NNVSALDLNG---DENTNNVSALDLNGDES 601
LD NG+ T ++ +D + NT+ S + + G+
Sbjct: 500 GGRLDANGNNLTFEHIRNIDDGARLVNHNTSKTSTVTITGESL 542
Score = 36.2 bits (82), Expect = 0.037
Identities = 14/100 (14%), Positives = 33/100 (33%), Gaps = 4/100 (4%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT-NNVSALDLNG---DE 558
+ V + N+ +D N LD NG+ T ++ +D +
Sbjct: 468 AFSQVGIVSGRSTVVLNDDKQVDPNSIYFGFRGGRLDANGNNLTFEHIRNIDDGARLVNH 527
Query: 559 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG 598
NT+ S + + G+ + + + + + +
Sbjct: 528 NTSKTSTVTITGESLITDPNTITPYNIDAPDEDNPYAFRR 567
Score = 34.7 bits (78), Expect = 0.10
Identities = 14/99 (14%), Positives = 34/99 (34%), Gaps = 4/99 (4%)
Query: 505 NNVSALDLNGDENTNNVSALDLNGDENT-NNVSALDLNG---DENTNNVSALDLNGDENT 560
N+ +D N LD NG+ T ++ +D + NT+ S + + G+
Sbjct: 484 NDDKQVDPNSIYFGFRGGRLDANGNNLTFEHIRNIDDGARLVNHNTSKTSTVTITGESLI 543
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 599
+ + + + + + ++ + N
Sbjct: 544 TDPNTITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYT 582
Score = 33.5 bits (75), Expect = 0.21
Identities = 17/99 (17%), Positives = 31/99 (31%), Gaps = 1/99 (1%)
Query: 498 NPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 557
NP + + L + N +L + A N + + V +
Sbjct: 421 NPKSDRLAKIGKGTLIVEGKGENKGSLKVGDGTVILKQQADANNKVKAFSQVGIVSGRST 480
Query: 558 ENTNNVSALDLNGDENTNNVSALDLNGDENT-NNVSALD 595
N+ +D N LD NG+ T ++ +D
Sbjct: 481 VVLNDDKQVDPNSIYFGFRGGRLDANGNNLTFEHIRNID 519
Score = 32.8 bits (73), Expect = 0.37
Identities = 24/121 (19%), Positives = 43/121 (35%), Gaps = 10/121 (8%)
Query: 492 NCKDALNPDDEN-TNNVSALDLNGDENT-NNVSALDLNG---DENTNNVSALDLNG---- 542
N ++P+ LD NG+ T ++ +D + NT+ S + + G
Sbjct: 484 NDDKQVDPNSIYFGFRGGRLDANGNNLTFEHIRNIDDGARLVNHNTSKTSTVTITGESLI 543
Query: 543 -DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDES 601
D NT +D ++N + G N + + + S L N ES
Sbjct: 544 TDPNTITPYNIDAPDEDNPYAFRRIKDGGQLYLNLENYTYYALRKGASTRSELPKNSGES 603
Query: 602 D 602
+
Sbjct: 604 N 604
Score = 32.0 bits (71), Expect = 0.74
Identities = 13/98 (13%), Positives = 26/98 (26%), Gaps = 2/98 (2%)
Query: 503 NTNNVSALDLNGDENTN--NVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT 560
++ ++ + L + N +L + A N +
Sbjct: 410 ADGKTVTWKVHNPKSDRLAKIGKGTLIVEGKGENKGSLKVGDGTVILKQQADANNKVKAF 469
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG 598
+ V + N+ +D N LD NG
Sbjct: 470 SQVGIVSGRSTVVLNDDKQVDPNSIYFGFRGGRLDANG 507
>3syj_A Adhesion and penetration protein autotransporter; bacterial
aggregation and biofilm formation, SELF-associatin
autotransporter (SAAT); 2.20A {Haemophilus influenzae}
Length = 1011
Score = 34.7 bits (78), Expect = 0.099
Identities = 18/103 (17%), Positives = 33/103 (32%), Gaps = 4/103 (3%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNN 562
N ++ + + A D + + + + G N+ D +
Sbjct: 417 KGENKGSISVGDGKVILEQQADDQGNKQAFSEIGLVSGRGTVQLNDDKQFDTDKFYFGFR 476
Query: 563 VSALDLNGDENTNNVSALDLNG----DENTNNVSALDLNGDES 601
LDLNG T G + NT + + + G+ES
Sbjct: 477 GGRLDLNGHSLTFKRIQNTDEGAMIVNHNTTQAANVTITGNES 519
Score = 33.9 bits (76), Expect = 0.19
Identities = 13/93 (13%), Positives = 28/93 (30%)
Query: 498 NPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 557
+ + + + L+ N ++ + + A D + + + + G
Sbjct: 398 GVEHDRLSKIGKGTLHVQAKGENKGSISVGDGKVILEQQADDQGNKQAFSEIGLVSGRGT 457
Query: 558 ENTNNVSALDLNGDENTNNVSALDLNGDENTNN 590
N+ D + LDLNG T
Sbjct: 458 VQLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFK 490
Score = 32.4 bits (72), Expect = 0.47
Identities = 17/99 (17%), Positives = 32/99 (32%), Gaps = 4/99 (4%)
Query: 504 TNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNV 563
A D + + + + G N+ D + LDLNG T
Sbjct: 432 ILEQQADDQGNKQAFSEIGLVSGRGTVQLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFKR 491
Query: 564 SALDLNG----DENTNNVSALDLNGDENTNNVSALDLNG 598
G + NT + + + G+E+ + ++N
Sbjct: 492 IQNTDEGAMIVNHNTTQAANVTITGNESIVLPNGNNINK 530
Score = 32.4 bits (72), Expect = 0.59
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 4/94 (4%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG----DE 558
+ + + G N+ D + LDLNG T G +
Sbjct: 445 AFSEIGLVSGRGTVQLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFKRIQNTDEGAMIVNH 504
Query: 559 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVS 592
NT + + + G+E+ + ++N + ++
Sbjct: 505 NTTQAANVTITGNESIVLPNGNNINKLDYRKEIA 538
Score = 31.6 bits (70), Expect = 1.0
Identities = 14/99 (14%), Positives = 31/99 (31%)
Query: 501 DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT 560
EN+ ++ + + + L+ N ++ + + A D +
Sbjct: 387 SENSTVTWKVNGVEHDRLSKIGKGTLHVQAKGENKGSISVGDGKVILEQQADDQGNKQAF 446
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 599
+ + + G N+ D + LDLNG
Sbjct: 447 SEIGLVSGRGTVQLNDDKQFDTDKFYFGFRGGRLDLNGH 485
Score = 31.2 bits (69), Expect = 1.3
Identities = 18/107 (16%), Positives = 29/107 (27%), Gaps = 7/107 (6%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG----DENTNNVSALDLNGDE 558
N+ D + LDLNG T G + NT + + + G+E
Sbjct: 459 QLNDDKQFDTDKFYFGFRGGRLDLNGHSLTFKRIQNTDEGAMIVNHNTTQAANVTITGNE 518
Query: 559 N---TNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD 602
+ N + L+ + N L D
Sbjct: 519 SIVLPNGNNINKLDYRKEIAYNGWFGETDKNKHNGRLNLIYKPTTED 565
>1wxr_A Haemoglobin protease; hemoglobine protease, autotransporter, beta
helix, heme uptake, spate, hydrolase; 2.20A {Escherichia
coli} PDB: 3ak5_A
Length = 1048
Score = 34.6 bits (78), Expect = 0.12
Identities = 14/99 (14%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 498 NPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 557
+N + + L N L + + N A + + ++V+
Sbjct: 363 GVKGDNLHKIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQAFSSVNIASGRPT 422
Query: 558 ENTNNVSALDLNGDENTNNVSALDLNGDENT-NNVSALD 595
+ ++ + LD+NG+ T + + A D
Sbjct: 423 VVLTDERQVNPDTVSWGYRGGTLDVNGNSLTFHQLKAAD 461
Score = 33.5 bits (75), Expect = 0.26
Identities = 12/98 (12%), Positives = 30/98 (30%)
Query: 501 DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT 560
D + ++ +N + + L N L + + N A + +
Sbjct: 352 DNGVSVNWQVNGVKGDNLHKIGEGTLTVQGTGINEGGLKVGDGKVVLNQQADNKGQVQAF 411
Query: 561 NNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG 598
++V+ + ++ + LD+NG
Sbjct: 412 SSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLDVNG 449
Score = 31.9 bits (71), Expect = 0.82
Identities = 13/100 (13%), Positives = 33/100 (33%), Gaps = 3/100 (3%)
Query: 506 NVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT-NNVS 564
N A + + ++V+ + ++ + LD+NG+ T + +
Sbjct: 399 NQQADNKGQVQAFSSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLDVNGNSLTFHQLK 458
Query: 565 ALDLNGD--ENTNNVSALDLNGDENTNNVSALDLNGDESD 602
A D N + + + L+ + V+ +
Sbjct: 459 AADYGAVLANNVDKRATITLDYALRADKVALNGWSESGKG 498
Score = 31.2 bits (69), Expect = 1.3
Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 3/103 (2%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNN 562
N L + + N A + + ++V+ + ++ +
Sbjct: 382 TGINEGGLKVGDGKVVLNQQADNKGQVQAFSSVNIASGRPTVVLTDERQVNPDTVSWGYR 441
Query: 563 VSALDLNGDENT-NNVSALDLNGD--ENTNNVSALDLNGDESD 602
LD+NG+ T + + A D N + + + L+
Sbjct: 442 GGTLDVNGNSLTFHQLKAADYGAVLANNVDKRATITLDYALRA 484
Score = 30.4 bits (67), Expect = 2.1
Identities = 13/106 (12%), Positives = 34/106 (32%), Gaps = 7/106 (6%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENT-NNVSALD-----LNG 556
++V+ + ++ + LD+NG+ T + + A D N
Sbjct: 410 AFSSVNIASGRPTVVLTDERQVNPDTVSWGYRGGTLDVNGNSLTFHQLKAADYGAVLANN 469
Query: 557 DENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDESD 602
+ ++ LD + ++ +G N+ + +
Sbjct: 470 VDKRATIT-LDYALRADKVALNGWSESGKGTAGNLYKYNNPYTNTT 514
Score = 28.5 bits (62), Expect = 7.6
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 4/100 (4%)
Query: 503 NTNNVSALDLNGDENT-NNVSALDLNGD--ENTNNVSALDLNGDENTNNVSALDLNGDEN 559
LD+NG+ T + + A D N + + + L+ + V AL+ +
Sbjct: 438 WGYRGGTLDVNGNSLTFHQLKAADYGAVLANNVDKRATITLDYALRADKV-ALNGWSESG 496
Query: 560 TNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGD 599
L + TN L + N
Sbjct: 497 KGTAGNLYKYNNPYTNTTDYFILKQSTYGYFPTDQSSNAT 536
>2xqh_A Immunoglobulin-binding protein EIBD; cell adhesion, virulence,
beta-helix; 1.99A {Escherichia coli}
Length = 281
Score = 33.5 bits (76), Expect = 0.16
Identities = 17/97 (17%), Positives = 28/97 (28%), Gaps = 5/97 (5%)
Query: 500 DDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNG--D 557
E+ D E V A G ++ ++ + N + L+G D
Sbjct: 188 TVESEKQKKYTDQKTSEVNEKVEARTTVGVDSDGKLTRAEGATKTIAVNDGLVALSGRTD 247
Query: 558 ENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSAL 594
V A T N +++ N N L
Sbjct: 248 RIDYAVGA---IDGRVTRNTQSIEKNSKAIAANTRTL 281
>1vcl_A Hemolytic lectin CEL-III; hemolysis, hemagglutination,
pore-forming, calcium, toxin; HET: BTB; 1.70A {Cucumaria
echinata} SCOP: b.42.2.1 b.42.2.1 d.281.1.1 PDB: 2z48_A*
2z49_A*
Length = 432
Score = 32.8 bits (74), Expect = 0.33
Identities = 20/114 (17%), Positives = 37/114 (32%), Gaps = 18/114 (15%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDEN-----TNNVSALDLNGDENTNNVSALDLNGD 557
N + LD+ G + T ++ D ++ + L N + LD+ G
Sbjct: 113 NLASGKCLDIEGSDGTGDIGVYDCQNLDDQYFYVRSRGPELFYGRLRNEKSDLCLDVEGS 172
Query: 558 ENTNNVSALDLNGDEN-----------TNNVS--ALDLNGDENTNNVSALDLNG 598
+ NV + + N S LD+ G + + NV +
Sbjct: 173 DGKGNVLMYSCEDNLDQWFRYYENGEIVNAKSGMCLDVEGSDGSGNVGIYRCDD 226
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 31.2 bits (71), Expect = 0.99
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 27/92 (29%)
Query: 366 LLIDEVPEVREIFANKLHKGL---------------GRNLPNKCLPLDFMGFYALGGLEE 410
L IDE+ + L + G + + +P DF+ A G
Sbjct: 205 LFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV-LVAAG---- 259
Query: 411 EKKLKMSTEKALAQLPNFLPDFMLVFAIPVLT 442
+ ++ L + + V
Sbjct: 260 -------NLDTVDKMHPALRSRIRGYGYEVYM 284
>2wps_A Trimeric autotransporter adhesin fragment; membrane protein, ION
coordination, hydrophobic core, TAA, stutter, stammer,
coiled coil; 2.60A {Salmonella enterica subsp} PDB:
2wpr_A
Length = 107
Score = 29.5 bits (65), Expect = 1.1
Identities = 12/105 (11%), Positives = 33/105 (31%), Gaps = 7/105 (6%)
Query: 490 MKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNV 549
MK +D + ++ + V + NTN+++ + NT N+
Sbjct: 1 MKQIEDKIEEILSKIYHIENEIARIKKLIEKVDQNTADITTNTNSINQNTTDIATNTTNI 60
Query: 550 SALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSAL 594
+ L + + ++ + + + + + L
Sbjct: 61 NNLSDSITTLMKQI-------EDKIEEILSKIYHIENEIARIKKL 98
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger,
ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Length = 1230
Score = 31.2 bits (69), Expect = 1.4
Identities = 21/200 (10%), Positives = 57/200 (28%), Gaps = 21/200 (10%)
Query: 52 RLTGNAIPILISYVDDCLNHGNLIDELGLHPGTAGERGLKLLVMLSYVYPCHFMQQSSIQ 111
L + + D L N++ + + ++ L + + +
Sbjct: 74 PLVSKVKEYQVETIVDTLCT-NMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCK 132
Query: 112 ALLKMLT--IEDEIVAPLVFSVLSFLGKY-RPLGEVFKEEMKQLVPICQDMIEKGTPKQA 168
+ LT I + + L + G + ++ +
Sbjct: 133 KITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVR 192
Query: 169 KQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNY--RTAIIA 226
K+ I L + + +FVD+++ + L+ + RT I
Sbjct: 193 KRTIIAL------GHLVMSCGN---------IVFVDLIEHLLSELSKNDSMSTTRTYIQC 237
Query: 227 LGHIAYNMPNKFPAVIKNTV 246
+ I+ ++ ++ +
Sbjct: 238 IAAISRQAGHRIGEYLEKII 257
Score = 29.7 bits (65), Expect = 3.8
Identities = 26/148 (17%), Positives = 48/148 (32%), Gaps = 28/148 (18%)
Query: 110 IQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGTPKQAK 169
LLK +E +V L L P + L+P + + G+
Sbjct: 933 WALLLKHCECAEEGTRNVVAECLGKLTLIDP---------ETLLPRLKGYLISGSSYARS 983
Query: 170 QAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAIIALGH 229
+ + +TI + + ++ + D L ++ PD R A++
Sbjct: 984 SVVTAV------KFTISDHPQPIDPLLK--NCIGDFLKTLE---DPDLNVRRVALVTFNS 1032
Query: 230 IAYNMPNK--------FPAVIKNTVSRK 249
A+N P+ P + T RK
Sbjct: 1033 AAHNKPSLIRDLLDTVLPHLYNETKVRK 1060
>3c9i_A Tail needle protein GP26; xenon, coiled-coil, protein fiber, coiled
coil, late protein, viral protein; 1.95A {Bacteriophage
P22} PDB: 2poh_A
Length = 242
Score = 30.3 bits (67), Expect = 1.6
Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 7/121 (5%)
Query: 474 PSDSFSSLFFKEMIDQMKNCKDALNPDDENTNNVSALDLNGDENTNNVSALDLNGDENTN 533
P + FS + +I Q + +E + DE ++ + +
Sbjct: 32 PRNVFSKSYLLYVIAQGTDVGAIAGKANEAGQGAYDAQVKNDEQDVELADHEARIKQLRI 91
Query: 534 NVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSA 593
+V + NT ++AL++ +++L NVSALD NN+SA
Sbjct: 92 DVDDHESRITANTKAITALNVRVTTAEGEIASL-------QTNVSALDGRVTTAENNISA 144
Query: 594 L 594
L
Sbjct: 145 L 145
>3sze_A Serine protease ESPP; parallel beta-helix, hydrolase; 2.50A
{Escherichia coli O157}
Length = 968
Score = 30.4 bits (67), Expect = 2.4
Identities = 21/102 (20%), Positives = 35/102 (34%), Gaps = 6/102 (5%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNG-DENTNNVSALDLNGDENTNNVSA--LDLNGDEN 559
N +S + NG N LDLNG +++ N ++A D + L LN +
Sbjct: 404 AENALSGGEYNGIFFAKNGGTLDLNGYNQSFNKIAATDSGAVITNTSTKKSILSLNNTAD 463
Query: 560 TNNVSALDLNGDEN---TNNVSALDLNGDENTNNVSALDLNG 598
++ N D L D + + + L
Sbjct: 464 YIYHGNINGNLDVLQHHETKKENRRLILDGGVDTTNDISLRN 505
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 3.1
Identities = 9/42 (21%), Positives = 16/42 (38%), Gaps = 14/42 (33%)
Query: 146 KEEMKQLVPICQDMIEKGTPKQAKQ-AIRCLYKNLGDSYTIE 186
K+ +K+L Q ++ A AI+ T+E
Sbjct: 19 KQALKKL----QASLKLYADDSAPALAIKA---------TME 47
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine,
antifolate resistance, oxidoreductase, transferase; HET:
CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A*
3qgt_A*
Length = 608
Score = 29.5 bits (66), Expect = 3.9
Identities = 19/58 (32%), Positives = 24/58 (41%), Gaps = 2/58 (3%)
Query: 376 EIFANKLHKGLGRN--LPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQLPNFLPD 431
E+F N +GLG LP KC+ LD F A+ E K + K L D
Sbjct: 30 EVFNNYTFRGLGNKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVD 87
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller
superfamily, protein binding; HET: YCM; 2.40A
{Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Length = 391
Score = 28.2 bits (63), Expect = 8.1
Identities = 18/115 (15%), Positives = 35/115 (30%), Gaps = 28/115 (24%)
Query: 513 NGDENTNNVSALDLNGDENTNNVS------ALDLNGDENT--------NNVSALDLNGDE 558
N D+ N VS +D ++ T + + + D N VS +D +
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTATNT 277
Query: 559 NTNNVS--------ALDLNGDE------NTNNVSALDLNGDENTNNVSALDLNGD 599
T ++ + + + S + + V DL+ D
Sbjct: 278 ITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKD 332
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0752 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,997,079
Number of extensions: 544983
Number of successful extensions: 1175
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1136
Number of HSP's successfully gapped: 58
Length of query: 602
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 503
Effective length of database: 3,937,614
Effective search space: 1980619842
Effective search space used: 1980619842
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 60 (26.8 bits)