RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2712
(602 letters)
>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein
phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId:
9606]}
Length = 588
Score = 30.1 bits (66), Expect = 0.94
Identities = 22/101 (21%), Positives = 37/101 (36%), Gaps = 2/101 (1%)
Query: 325 KMSKQEMAWMRLSAGCAMLKICEQKGVGDQYSPEQFYNLSRLLIDEVPEVREIFANKLHK 384
MS R++ + + E G D + + R+ D V VR A L K
Sbjct: 487 AMSGDPNYLHRMTTLFCINVLSEVCG-QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQK 545
Query: 385 GLGRNLPNKCLPLDFMGFYALGGLEEEKKLKMSTEKALAQL 425
+G L N L + +++ +K ++AL L
Sbjct: 546 -IGPILDNSTLQSEVKPILEKLTQDQDVDVKYFAQEALTVL 585
>d1j3ka_ c.71.1.1 (A:) Bifunctional enzyme dihydrofolate
reductase-thymidylate synthase, DFR domain {Malaria
parasite (Plasmodium falciparum) [TaxId: 5833]}
Length = 231
Score = 29.4 bits (65), Expect = 0.96
Identities = 14/32 (43%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 376 EIFANKLHKGLGRN--LPNKCLPLDFMGFYAL 405
E+F N +GLG LP KC+ LD F A+
Sbjct: 30 EVFNNYTFRGLGNKGVLPWKCISLDMKYFRAV 61
>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId:
9606]}
Length = 529
Score = 29.9 bits (65), Expect = 1.1
Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 13/244 (5%)
Query: 105 MQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQLVPICQDMIEKGT 164
+ +I L K+L ED++V ++ L K + + I + M
Sbjct: 14 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73
Query: 165 PKQAKQAIRCLYKNLGDSYTIEVMDENSENGVRTVDLFVDILDKVKMNLTPDSPNYRTAI 224
+ A+ L NL S+ E + ++G + V +L +P AI
Sbjct: 74 VETARCTAGTL-HNL--SHHREGLLAIFKSGG--IPALVKMLG------SPVDSVLFYAI 122
Query: 225 IALGHIAYNMPNKFPAVIKNTVSRKIVKELLIKETEESYQYKKD--WVFEEDLPNEVRCK 282
L ++ + AV +K+V L + + + +++
Sbjct: 123 TTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIIL 182
Query: 283 MEGMKMMARWLLGLKAHKESAQKTFRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAM 342
G ++ +++ T R+L + V + + + + L+
Sbjct: 183 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQR 242
Query: 343 LKIC 346
L
Sbjct: 243 LVQN 246
>d1s7ma_ b.144.1.1 (A:) Autotransporter Hia {Haemophilus influenzae
[TaxId: 727]}
Length = 158
Score = 28.8 bits (64), Expect = 1.2
Identities = 18/71 (25%), Positives = 27/71 (38%), Gaps = 9/71 (12%)
Query: 503 NTNNVSA----LDLNGDENTNNVSALDLNGDENTN--NVSALDLNGDENTNNVSALDLN- 555
N N +S + G N VS L GD N + SA +L + +L+
Sbjct: 23 NANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLTNLDE 82
Query: 556 --GDENTNNVS 564
D+ T V+
Sbjct: 83 KGTDKQTPVVA 93
Score = 28.1 bits (62), Expect = 1.9
Identities = 17/68 (25%), Positives = 25/68 (36%), Gaps = 6/68 (8%)
Query: 541 NGDENTNNVSA----LDLNGDENTNNVSALDLNGDENTN--NVSALDLNGDENTNNVSAL 594
G N N +S + G N VS L GD N + SA +L +
Sbjct: 19 AGANNANTISVTKDGISAGGQSVKNVVSGLKKFGDANFDPLTSSADNLTKQNDDAYKGLT 78
Query: 595 DLNGDESD 602
+L+ +D
Sbjct: 79 NLDEKGTD 86
>d1u4ga_ d.92.1.2 (A:) Elastase {Pseudomonas aeruginosa [TaxId:
287]}
Length = 298
Score = 27.2 bits (60), Expect = 5.1
Identities = 16/113 (14%), Positives = 30/113 (26%), Gaps = 17/113 (15%)
Query: 503 NTNNVSALDLNGDENTNNVSALDLNGDENTNN---------VSALDLNGD-----ENTNN 548
+ NV +D+N + + + NT A G +
Sbjct: 33 DDGNVITVDMNSSTDDSKTTPFRFACPTNTYKQVNGAYSPLNDAHFFGGVVFKLYRDWFG 92
Query: 549 VSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDENTNNVSALDLNGDES 601
S L V + + + L +G + +LD+ E
Sbjct: 93 TSPLTHKL---YMKVHYGRSVENAYWDGTAMLFGDGATMFYPLVSLDVAAHEV 142
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 27.5 bits (60), Expect = 5.4
Identities = 3/21 (14%), Positives = 11/21 (52%)
Query: 42 RTLDKKVMPHRLTGNAIPILI 62
R +D + P +++ + + +
Sbjct: 347 RVIDGSIPPTQMSSHVMTVFY 367
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 26.7 bits (57), Expect = 8.1
Identities = 12/57 (21%), Positives = 18/57 (31%), Gaps = 1/57 (1%)
Query: 138 YRPLGEVFKEEMKQLVPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVMDENSEN 194
E K+ + +P + I + NLG IE ENS +
Sbjct: 139 GNYAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIE-HIEYRSENSPD 194
>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 584
Score = 27.1 bits (59), Expect = 8.5
Identities = 34/331 (10%), Positives = 91/331 (27%), Gaps = 60/331 (18%)
Query: 93 LVMLSYVYPCHFMQQSSIQALLKMLTIEDEIVAPLVFSVLSFLGKYRPLGEVFKEEMKQL 152
L+ L P ++ +L + V S+++ L + P E FK +
Sbjct: 164 LLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP--EEFKTSVSLA 221
Query: 153 VPICQDMIEKGTPKQAKQAIRCLYKNLGDSYTIEVM-----DENSENGVRTVDLFVDILD 207
V ++ + + + ++ E+ R + IL+
Sbjct: 222 VSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILN 281
Query: 208 KVKMNLTPDSPNYRTAIIALGHIAYNMPNKFPAV---------------------IKNTV 246
K + + A A+ A ++ + ++
Sbjct: 282 KAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLVRACNQLGQFLQHRETNLRYLA 341
Query: 247 SRKIVKELLIKETEESYQYKKDWVFEEDLPNEVRCKMEGMKMMARWLLGLKAHKESAQKT 306
+ + + E+ + + V ++ A LL + +AQ+
Sbjct: 342 LESMCTLASSEFSHEAVKTHIETVINALKTERDVS----VRQRAVDLLYAMCDRSNAQQI 397
Query: 307 FRMLNAVIVNKGDLLQSDKMSKQEMAWMRLSAGCAMLKICEQKG---------------V 351
+ + + +D ++E+ + + E+ +
Sbjct: 398 VAEMLSYLET------ADYSIREEIVL-------KVAILAEKYAVDYTWYVDTILNLIRI 444
Query: 352 GDQYSPEQFYNLSRLLIDEVPEVREIFANKL 382
Y E+ + ++ +V+ A +
Sbjct: 445 AGDYVSEEVWYRVIQIVINRDDVQGYAAKTV 475
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.134 0.384
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,159,747
Number of extensions: 101698
Number of successful extensions: 313
Number of sequences better than 10.0: 1
Number of HSP's gapped: 300
Number of HSP's successfully gapped: 15
Length of query: 602
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 511
Effective length of database: 1,158,166
Effective search space: 591822826
Effective search space used: 591822826
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 56 (25.9 bits)