BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2713
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2AXN|A Chain A, Crystal Structure Of The Human Inducible Form 6-
Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
pdb|2DWO|A Chain A, Pfkfb3 In Complex With Adp And Pep
pdb|2DWP|A Chain A, A Pseudo Substrate Complex Of 6-Phosphofructo-2-Kinase Of
Pfkfb
pdb|2I1V|B Chain B, Crystal Structure Of Pfkfb3 In Complex With Adp And
Fructose-2,6-Bisphosphate
pdb|3QPU|A Chain A, Pfkfb3 In Complex With Ppi
pdb|3QPV|A Chain A, Pfkfb3 Trapped In A Phospho-Enzyme Intermediate State
pdb|3QPW|A Chain A, Pfkfb3 In Complex With Aluminum Tetrafluoride
Length = 520
Score = 111 bits (278), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/133 (40%), Positives = 82/133 (61%), Gaps = 2/133 (1%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
+P V+ +VGLPARGKT ++ KL+RYL W +KVF+V YRR+ ++ Y+S++ FR DN
Sbjct: 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNE 93
Query: 65 EGYNIRQLSAREAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
E +R+ A A D +L K G++A+ D T T E+R I +FA++ FK F+E
Sbjct: 94 EAMKVRKQCALAALRDVKSYLAKEGGQIAVFDATNTTRERRHMIL-HFAKENDFKAFFIE 152
Query: 124 LIVQDEEILEHNI 136
+ D ++ NI
Sbjct: 153 SVCDDPTVVASNI 165
>pdb|2BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
pdb|2BIF|B Chain B, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase H256a
Mutant With F6p In Phosphatase Active Site
Length = 469
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
P ++ +VGLPARGKT ++ KL+RYL + ++ F+V YRR ++ Y S + F DN
Sbjct: 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 97
Query: 65 EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
EG IR+ A A D K+L + G VA+ D T T E+R I + F + G+K FVE
Sbjct: 98 EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 156
Query: 124 LIVQDEEILEHNIKQ 138
I D E++ NI Q
Sbjct: 157 SICVDPEVIAANIVQ 171
>pdb|3BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase Empty
6-Pf-2k Active Site
Length = 468
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
P ++ +VGLPARGKT ++ KL+RYL + ++ F+V YRR ++ Y S + F DN
Sbjct: 37 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 96
Query: 65 EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
EG IR+ A A D K+L + G VA+ D T T E+R I + F + G+K FVE
Sbjct: 97 EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 155
Query: 124 LIVQDEEILEHNIKQ 138
I D E++ NI Q
Sbjct: 156 SICVDPEVIAANIVQ 170
>pdb|1BIF|A Chain A, 6-Phosphofructo-2-KinaseFRUCTOSE-2,6-Bisphosphatase
Bifunctional Enzyme Complexed With Atp-G-S And Phosphate
Length = 469
Score = 105 bits (262), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 78/135 (57%), Gaps = 2/135 (1%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
P ++ +VGLPARGKT ++ KL+RYL + ++ F+V YRR ++ Y S + F DN
Sbjct: 38 CPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNE 97
Query: 65 EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
EG IR+ A A D K+L + G VA+ D T T E+R I + F + G+K FVE
Sbjct: 98 EGLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVE 156
Query: 124 LIVQDEEILEHNIKQ 138
I D E++ NI Q
Sbjct: 157 SICVDPEVIAANIVQ 171
>pdb|1K6M|A Chain A, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
pdb|1K6M|B Chain B, Crystal Structure Of Human Liver
6-Phosphofructo-2-KinaseFRUCTOSE-2, 6-Bisphosphatase
Length = 432
Score = 103 bits (256), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 55/135 (40%), Positives = 83/135 (61%), Gaps = 3/135 (2%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
+P +V +VGLPARGKT ++ KL+RYL + +KVF++ YRR+ + Y +++ F DN
Sbjct: 2 SPTMVIMVGLPARGKTYISTKLTRYLNFIGTPTKVFNLGQYRREAVS-YKNYEFFLPDNM 60
Query: 65 EGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
E IR+ A A +D +L ++ G VA+ D T T E+R I FA++ G+KV F+E
Sbjct: 61 EALQIRKQCALAALKDVHNYLSHEEGHVAVFDATNTTRERRSLILQ-FAKEHGYKVFFIE 119
Query: 124 LIVQDEEILEHNIKQ 138
I D I+ NI+Q
Sbjct: 120 SICNDPGIIAENIRQ 134
>pdb|3NDB|B Chain B, Crystal Structure Of A Signal Sequence Bound To The Signal
Recognition Particle
Length = 454
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
V+ LVG+ GKT A KL+RY+ K + + YR
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|2V3C|C Chain C, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
pdb|2V3C|D Chain D, Crystal Structure Of The Srp54-Srp19-7s.S Srp Rna Complex
Of M. Jannaschii
Length = 432
Score = 33.1 bits (74), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
V+ LVG+ GKT A KL+RY+ K + + YR
Sbjct: 101 VILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
P ++ LVG+ GKT A KL+ + +K + + YR + + ++ N
Sbjct: 104 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD-----QLLQLGNQI 158
Query: 66 GYNI-----RQLSAREAQEDATKWLKNDGEVAIIDGT--------TATMEKRKQIHD 109
G + Q A++ ++KN ++ I+D T +E+ K+++D
Sbjct: 159 GVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 215
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 30.0 bits (66), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/117 (21%), Positives = 50/117 (42%), Gaps = 18/117 (15%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
P ++ LVG+ GKT A KL+ + +K + + YR + + ++ N
Sbjct: 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYD-----QLLQLGNQI 151
Query: 66 GYNI-----RQLSAREAQEDATKWLKNDGEVAIIDGT--------TATMEKRKQIHD 109
G + Q A++ ++KN ++ I+D T +E+ K+++D
Sbjct: 152 GVQVYGEPNNQNPIEIAKKGVDIFVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYD 208
>pdb|2X1L|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|B Chain B, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1L|C Chain C, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine And
Adenosine
pdb|2X1M|A Chain A, Crystal Structure Of Mycobacterium Smegmatis
Methionyl-Trna Synthetase In Complex With Methionine
Length = 524
Score = 30.0 bits (66), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 22/40 (55%)
Query: 20 TVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIF 59
T +A + +TWT+ ++ F +SAY + L LY H F
Sbjct: 155 TRIATETGAPVTWTEEQTYFFRLSAYTDRLLALYEEHPEF 194
>pdb|3DM5|A Chain A, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus.
pdb|3DM5|B Chain B, Structures Of Srp54 And Srp19, The Two Proteins Assembling
The Ribonucleic Core Of The Signal Recognition Particle
From The Archaeon Pyrococcus Furiosus
Length = 443
Score = 29.3 bits (64), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 12/62 (19%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR------------RKHLELY 53
P ++ +VG+ GKT KL+RY +K V +R R H+E++
Sbjct: 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVF 159
Query: 54 NS 55
+
Sbjct: 160 GN 161
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
P V+ LVG+ GKT A KL+ + K + YR
Sbjct: 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138
>pdb|2Y7I|A Chain A, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351.
pdb|2Y7I|B Chain B, Structural Basis For High Arginine Specificity In
Salmonella Typhimurium Periplasmic Binding Protein
Stm4351
Length = 229
Score = 27.7 bits (60), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV 119
KWLKN+ + AI M++R DY+ + +G V
Sbjct: 166 KWLKNNPDYAI-------MDERASDPDYYGKGLGIAV 195
>pdb|2YVU|A Chain A, Crystal Structure Of Ape1195
pdb|2YVU|B Chain B, Crystal Structure Of Ape1195
Length = 186
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40
+VV L GLP GKT +A +L+ L ++ +V
Sbjct: 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47
>pdb|2PBR|A Chain A, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
pdb|2PBR|B Chain B, Crystal Structure Of Thymidylate Kinase (Aq_969) From
Aquifex Aeolicus Vf5
Length = 195
Score = 26.9 bits (58), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 5/40 (12%)
Query: 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
+++A G+ GKT A KL YL K K + VS YR
Sbjct: 1 MLIAFEGIDGSGKTTQAKKLYEYL-----KQKGYFVSLYR 35
>pdb|4DLP|A Chain A, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|B Chain B, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
pdb|4DLP|C Chain C, Crystal Structure Of Methionyl-Trna Synthetase Metrs From
Brucella Melitensis Bound To Selenomethionine
Length = 536
Score = 26.9 bits (58), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 32 WTDHKSKVFSVSAYRRKHLELYNSHDIF 59
W + +S F +SAY+ K L+LY ++ F
Sbjct: 179 WVEEESYFFRLSAYQDKLLDLYENNPGF 206
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 50/122 (40%), Gaps = 17/122 (13%)
Query: 4 FTPLVVALVGLPARGKTVLAH----KLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIF 59
FTP V+ VG+ + KTV H KL + T + + + +AY R + +DI
Sbjct: 48 FTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTIT-TAYYRGAMGFILMYDI- 105
Query: 60 RVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQI----HDYFARKM 115
N E +N Q A Q W D I+ G ME+ + + A ++
Sbjct: 106 --TNEESFNAVQDWA--TQIKTYSW---DNAQVILVGNKCDMEEERVVPTEKGQLLAEQL 158
Query: 116 GF 117
GF
Sbjct: 159 GF 160
>pdb|2WIA|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIA|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Apo Form
pdb|2WIB|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIB|B Chain B, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gdp
Binding State
pdb|2WIC|A Chain A, Crystal Structures Of The N-Terminal Intracellular
Domain Of Feob From Klebsiella Pneumoniae In Gmppnp
Binding State
Length = 267
Score = 26.6 bits (57), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 33/73 (45%), Gaps = 11/73 (15%)
Query: 7 LVVALVGLPARGKTVLAHKLS----RYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVD 62
L V L+G P GKT L ++L+ R W V+ R++ + H + VD
Sbjct: 4 LTVGLIGNPNSGKTTLFNQLTGARQRVGNWA-------GVTVERKEGIFATTDHQVTLVD 56
Query: 63 NTEGYNIRQLSAR 75
Y++ +S++
Sbjct: 57 LPGTYSLTTISSQ 69
>pdb|3IYK|G Chain G, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|I Chain I, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|K Chain K, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 600
Score = 26.6 bits (57), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 43/101 (42%), Gaps = 20/101 (19%)
Query: 12 VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQ 71
+G+P + H L Y D +K+ SV HD+ ++ Y+I+Q
Sbjct: 4 LGIPVYKRGFPEHLLRGYEFIIDVGTKIESVGG----------RHDVTKIPEMNAYDIKQ 53
Query: 72 LSAREAQEDATKW---LKNDGEVA--IIDGTTATMEKRKQI 107
S R A W ++NDG V ++D T ++R+ +
Sbjct: 54 ESIRTAL-----WYNPIRNDGFVLPRVLDITLRGYDERRAV 89
>pdb|1J8Y|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens T112a Mutant
Length = 297
Score = 26.6 bits (57), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 18/41 (43%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
P V+ LVG+ GK A KL+ + K + YR
Sbjct: 98 PYVIMLVGVQGTGKATTAGKLAYFYKKKGFKVGLVGADVYR 138
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 26.2 bits (56), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV--FSVSAYRRKHLELYNSHDIFRVD 62
P ++ + G A GK+ A L L DH +V + + + EL + + R
Sbjct: 99 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKG 158
Query: 63 NTEGYNIRQL 72
E YN R L
Sbjct: 159 FPESYNRRAL 168
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 26.2 bits (56), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV--FSVSAYRRKHLELYNSHDIFRVD 62
P ++ + G A GK+ A L L DH +V + + + EL + + R
Sbjct: 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKG 148
Query: 63 NTEGYNIRQL 72
E YN R L
Sbjct: 149 FPESYNRRAL 158
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 25.8 bits (55), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV--FSVSAYRRKHLELYNSHDIFRVD 62
P ++ + G A GK+ A L L DH +V + + + EL + + R
Sbjct: 89 VPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKG 148
Query: 63 NTEGYNIRQL 72
E YN R L
Sbjct: 149 FPESYNRRAL 158
>pdb|4EG5|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
pdb|4EG5|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1312
Length = 542
Score = 25.8 bits (55), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 30 LTWTDHKSKVFSVSAYRRKHLELYNSH 56
+TW ++ +F +SA+R + LE Y+++
Sbjct: 166 VTWVSEENYMFRLSAFRERLLEWYHAN 192
>pdb|4EG1|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG1|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Substrate Methionine
pdb|4EG3|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG3|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Product Methionyl-Adenylate
pdb|4EG6|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG6|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1325
pdb|4EG8|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|4EG8|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Compound Chem 89
pdb|3U1E|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1E|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1387
pdb|3U1F|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1F|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1392
pdb|3U1G|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U1G|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1415
pdb|3U20|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
pdb|3U20|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1444
Length = 542
Score = 25.8 bits (55), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 30 LTWTDHKSKVFSVSAYRRKHLELYNSH 56
+TW ++ +F +SA+R + LE Y+++
Sbjct: 166 VTWVSEENYMFRLSAFRERLLEWYHAN 192
>pdb|3TUN|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|3TUN|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1356
pdb|4EG4|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG4|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1289
pdb|4EG7|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EG7|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1331
pdb|4EGA|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|4EGA|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1320
pdb|3U1Z|A Chain A, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
pdb|3U1Z|B Chain B, Trypanosoma Brucei Methionyl-Trna Synthetase In Complex
With Inhibitor Chem 1433
Length = 542
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 9/27 (33%), Positives = 19/27 (70%)
Query: 30 LTWTDHKSKVFSVSAYRRKHLELYNSH 56
+TW ++ +F +SA+R + LE Y+++
Sbjct: 166 VTWVSEENYMFRLSAFRERLLEWYHAN 192
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 25.8 bits (55), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYL 30
P V+ + G A GKT LA L+R L
Sbjct: 6 PFVIGIAGGTASGKTTLAQALARTL 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,142,463
Number of Sequences: 62578
Number of extensions: 155362
Number of successful extensions: 619
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 592
Number of HSP's gapped (non-prelim): 39
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 46 (22.3 bits)