Query psy2713
Match_columns 143
No_of_seqs 118 out of 1287
Neff 9.7
Searched_HMMs 46136
Date Fri Aug 16 23:19:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2713.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2713hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF01591 6PF2K: 6-phosphofruct 100.0 4.3E-31 9.3E-36 183.8 15.6 137 5-142 11-148 (222)
2 PF13671 AAA_33: AAA domain; P 99.9 3.1E-20 6.6E-25 121.8 13.6 121 8-141 1-121 (143)
3 PF01583 APS_kinase: Adenylyls 99.8 4.9E-19 1.1E-23 117.1 13.7 119 5-137 1-119 (156)
4 PRK06762 hypothetical protein; 99.8 7.4E-19 1.6E-23 118.2 13.6 118 5-140 1-118 (166)
5 COG0529 CysC Adenylylsulfate k 99.8 3.9E-19 8.5E-24 118.1 11.3 123 2-138 19-141 (197)
6 COG4639 Predicted kinase [Gene 99.8 9.9E-19 2.2E-23 113.9 12.8 120 5-141 1-120 (168)
7 PF08433 KTI12: Chromatin asso 99.8 2.6E-18 5.7E-23 123.4 13.7 121 7-141 2-122 (270)
8 KOG0234|consensus 99.8 1.7E-18 3.7E-23 129.0 13.0 135 5-140 27-163 (438)
9 PTZ00322 6-phosphofructo-2-kin 99.8 7.8E-18 1.7E-22 134.3 15.1 132 5-141 214-349 (664)
10 PHA02530 pseT polynucleotide k 99.8 1.2E-17 2.5E-22 122.0 14.1 123 5-139 1-124 (300)
11 TIGR03574 selen_PSTK L-seryl-t 99.8 1E-17 2.3E-22 119.4 13.4 118 8-140 1-118 (249)
12 TIGR01663 PNK-3'Pase polynucle 99.8 1.6E-17 3.5E-22 128.4 12.6 104 4-140 367-470 (526)
13 COG4088 Predicted nucleotide k 99.8 2E-17 4.4E-22 112.6 11.5 120 7-140 2-124 (261)
14 cd02027 APSK Adenosine 5'-phos 99.7 4.7E-17 1E-21 107.8 12.3 116 8-137 1-116 (149)
15 cd00227 CPT Chloramphenicol (C 99.7 2.1E-16 4.5E-21 107.2 13.1 126 6-140 2-133 (175)
16 cd02021 GntK Gluconate kinase 99.7 1.3E-16 2.8E-21 105.5 11.3 118 8-140 1-120 (150)
17 PF07931 CPT: Chloramphenicol 99.7 7.5E-16 1.6E-20 103.9 13.0 127 7-140 2-132 (174)
18 COG0645 Predicted kinase [Gene 99.7 1.3E-16 2.8E-21 105.7 9.0 121 7-140 2-126 (170)
19 TIGR03575 selen_PSTK_euk L-ser 99.7 4.8E-16 1E-20 114.6 12.3 127 8-140 1-177 (340)
20 TIGR00455 apsK adenylylsulfate 99.7 6.7E-16 1.4E-20 105.5 12.2 119 4-136 16-134 (184)
21 PF06414 Zeta_toxin: Zeta toxi 99.7 7.7E-16 1.7E-20 106.5 12.3 132 3-140 12-143 (199)
22 PRK14527 adenylate kinase; Pro 99.7 1.4E-15 3E-20 104.5 10.0 127 1-140 1-134 (191)
23 KOG3354|consensus 99.6 1.1E-14 2.4E-19 95.0 12.1 122 6-139 12-139 (191)
24 PRK00889 adenylylsulfate kinas 99.6 1.4E-14 3E-19 98.2 12.6 116 4-135 2-117 (175)
25 PRK14532 adenylate kinase; Pro 99.6 2.4E-15 5.3E-20 103.0 8.4 121 8-139 2-128 (188)
26 TIGR01359 UMP_CMP_kin_fam UMP- 99.6 1.1E-15 2.5E-20 104.1 6.7 122 8-140 1-126 (183)
27 PRK14531 adenylate kinase; Pro 99.6 2.9E-15 6.2E-20 102.3 8.3 124 6-140 2-130 (183)
28 PRK03846 adenylylsulfate kinas 99.6 2.1E-14 4.6E-19 99.2 12.5 119 3-135 21-139 (198)
29 TIGR01313 therm_gnt_kin carboh 99.6 1E-14 2.2E-19 97.7 10.2 113 9-139 1-115 (163)
30 PRK05541 adenylylsulfate kinas 99.6 3.3E-14 7.1E-19 96.4 12.7 117 4-137 5-121 (176)
31 PRK14529 adenylate kinase; Pro 99.6 1.2E-14 2.6E-19 101.8 9.0 124 8-142 2-130 (223)
32 PRK05506 bifunctional sulfate 99.6 3.9E-14 8.5E-19 112.8 12.8 119 3-135 457-575 (632)
33 PLN02674 adenylate kinase 99.6 2E-14 4.4E-19 101.8 9.9 129 6-141 31-161 (244)
34 PRK05537 bifunctional sulfate 99.6 6.3E-14 1.4E-18 110.0 12.7 119 5-136 391-510 (568)
35 PRK00279 adk adenylate kinase; 99.5 4.5E-14 9.7E-19 98.7 8.1 120 8-140 2-129 (215)
36 PLN02200 adenylate kinase fami 99.5 4.3E-14 9.3E-19 100.0 7.4 123 5-139 42-167 (234)
37 COG3265 GntK Gluconate kinase 99.5 2.6E-13 5.7E-18 88.0 10.1 112 12-139 1-112 (161)
38 TIGR01351 adk adenylate kinase 99.5 1.1E-13 2.3E-18 96.5 8.7 123 9-139 2-125 (210)
39 cd01428 ADK Adenylate kinase ( 99.5 6.5E-14 1.4E-18 96.1 7.2 119 9-140 2-127 (194)
40 KOG0635|consensus 99.5 2E-13 4.3E-18 89.0 8.6 121 3-137 28-148 (207)
41 KOG3079|consensus 99.5 2.2E-13 4.9E-18 91.3 9.0 130 2-141 4-136 (195)
42 COG0563 Adk Adenylate kinase a 99.5 1.5E-13 3.3E-18 93.3 8.1 123 8-139 2-128 (178)
43 PRK12339 2-phosphoglycerate ki 99.5 2.1E-12 4.6E-17 89.1 13.8 124 4-140 1-142 (197)
44 PRK01184 hypothetical protein; 99.5 1E-12 2.2E-17 89.7 11.7 121 7-139 2-125 (184)
45 PTZ00088 adenylate kinase 1; P 99.5 2.5E-13 5.5E-18 95.7 8.7 128 3-140 3-132 (229)
46 PRK11545 gntK gluconate kinase 99.5 5.1E-13 1.1E-17 89.7 9.4 112 12-139 1-112 (163)
47 TIGR01360 aden_kin_iso1 adenyl 99.4 3.1E-13 6.8E-18 92.2 7.3 122 6-140 3-129 (188)
48 COG0703 AroK Shikimate kinase 99.4 3.6E-13 7.8E-18 90.1 7.0 109 7-136 3-113 (172)
49 PRK09825 idnK D-gluconate kina 99.4 3.2E-12 6.9E-17 86.8 11.6 119 5-139 2-120 (176)
50 PRK13808 adenylate kinase; Pro 99.4 8.8E-13 1.9E-17 97.0 9.4 121 8-139 2-128 (333)
51 PF00406 ADK: Adenylate kinase 99.4 1.2E-12 2.6E-17 86.7 9.1 118 11-137 1-122 (151)
52 PRK14528 adenylate kinase; Pro 99.4 1.3E-12 2.9E-17 89.4 9.4 121 7-140 2-130 (186)
53 PRK14530 adenylate kinase; Pro 99.4 2.8E-12 6E-17 89.7 10.1 123 6-140 3-128 (215)
54 PLN02459 probable adenylate ki 99.4 2E-12 4.3E-17 92.2 9.3 126 6-141 29-156 (261)
55 PRK00625 shikimate kinase; Pro 99.4 2.8E-12 6E-17 86.8 8.0 31 8-38 2-32 (173)
56 PRK02496 adk adenylate kinase; 99.4 3.3E-12 7.2E-17 87.2 7.8 120 7-139 2-129 (184)
57 PRK14526 adenylate kinase; Pro 99.4 2.8E-12 6.2E-17 89.4 7.4 118 9-141 3-125 (211)
58 PRK13948 shikimate kinase; Pro 99.3 5.5E-12 1.2E-16 86.0 7.9 109 6-135 10-120 (182)
59 KOG3062|consensus 99.3 8.4E-12 1.8E-16 86.3 7.8 121 7-139 2-123 (281)
60 PRK00131 aroK shikimate kinase 99.3 1.6E-11 3.5E-16 82.7 9.2 33 4-36 2-34 (175)
61 PRK07261 topology modulation p 99.3 3.7E-11 8E-16 81.3 10.1 99 8-139 2-100 (171)
62 PRK13946 shikimate kinase; Pro 99.3 1E-11 2.2E-16 84.9 7.3 114 5-139 9-124 (184)
63 PRK12337 2-phosphoglycerate ki 99.3 1.7E-10 3.6E-15 88.0 14.2 124 5-137 254-402 (475)
64 cd01672 TMPK Thymidine monopho 99.3 2.9E-10 6.3E-15 77.9 13.7 129 7-140 1-148 (200)
65 PRK06696 uridine kinase; Valid 99.3 2.8E-11 6E-16 85.1 8.6 46 3-48 19-64 (223)
66 PRK12338 hypothetical protein; 99.3 1.8E-10 3.9E-15 84.4 13.0 128 4-140 2-152 (319)
67 COG0541 Ffh Signal recognition 99.3 5.2E-11 1.1E-15 89.4 10.3 98 3-108 97-202 (451)
68 PRK07667 uridine kinase; Provi 99.3 8.1E-11 1.8E-15 81.1 10.5 44 5-48 16-59 (193)
69 cd00464 SK Shikimate kinase (S 99.3 3.6E-11 7.8E-16 79.5 8.3 30 9-38 2-31 (154)
70 PRK13949 shikimate kinase; Pro 99.3 2.5E-11 5.4E-16 82.0 7.3 33 8-40 3-35 (169)
71 PRK08233 hypothetical protein; 99.3 5.6E-11 1.2E-15 80.7 8.9 28 4-31 1-28 (182)
72 PRK00698 tmk thymidylate kinas 99.3 5.8E-10 1.3E-14 77.1 14.1 35 5-39 2-36 (205)
73 PTZ00301 uridine kinase; Provi 99.2 8.3E-11 1.8E-15 81.9 9.6 45 4-48 1-47 (210)
74 PRK06217 hypothetical protein; 99.2 1.2E-10 2.5E-15 79.6 10.0 105 7-140 2-106 (183)
75 PRK06547 hypothetical protein; 99.2 1.8E-10 4E-15 77.9 10.6 117 3-139 12-139 (172)
76 PF13207 AAA_17: AAA domain; P 99.2 2.9E-11 6.3E-16 77.0 6.3 33 8-45 1-33 (121)
77 PRK10078 ribose 1,5-bisphospho 99.2 1.4E-10 2.9E-15 79.4 9.7 26 6-31 2-27 (186)
78 TIGR00041 DTMP_kinase thymidyl 99.2 1.5E-09 3.2E-14 74.6 14.8 36 5-40 2-37 (195)
79 PRK13947 shikimate kinase; Pro 99.2 2.8E-11 6E-16 81.6 6.1 33 8-40 3-35 (171)
80 PRK04040 adenylate kinase; Pro 99.2 3.7E-10 8E-15 77.5 11.1 40 6-48 2-41 (188)
81 PRK04220 2-phosphoglycerate ki 99.2 1.4E-09 3.1E-14 79.1 14.3 127 4-139 90-236 (301)
82 cd02028 UMPK_like Uridine mono 99.2 2.9E-10 6.3E-15 77.4 10.2 41 8-48 1-41 (179)
83 PRK13973 thymidylate kinase; P 99.2 2E-09 4.3E-14 75.2 14.6 132 4-139 1-150 (213)
84 KOG3347|consensus 99.2 1.2E-10 2.6E-15 75.9 7.6 107 6-139 7-114 (176)
85 PRK05057 aroK shikimate kinase 99.2 1.4E-10 3E-15 78.5 8.1 34 5-38 3-36 (172)
86 PRK08118 topology modulation p 99.2 2.6E-10 5.6E-15 76.9 9.3 98 8-139 3-100 (167)
87 PF00485 PRK: Phosphoribulokin 99.2 3.6E-10 7.8E-15 77.8 10.1 39 8-46 1-43 (194)
88 PRK14021 bifunctional shikimat 99.2 7E-11 1.5E-15 92.7 7.2 115 4-136 4-121 (542)
89 PRK05480 uridine/cytidine kina 99.2 4.5E-10 9.8E-15 78.1 10.4 42 4-47 4-45 (209)
90 PRK08356 hypothetical protein; 99.2 4.4E-10 9.4E-15 77.5 10.0 119 6-140 5-137 (195)
91 PRK03839 putative kinase; Prov 99.2 1.1E-10 2.3E-15 79.4 6.7 30 8-37 2-31 (180)
92 PRK06761 hypothetical protein; 99.2 6.4E-10 1.4E-14 80.4 10.8 126 4-138 1-127 (282)
93 COG0572 Udk Uridine kinase [Nu 99.2 4.9E-10 1.1E-14 77.7 9.7 42 5-48 7-48 (218)
94 PF00448 SRP54: SRP54-type pro 99.1 6.9E-10 1.5E-14 76.6 10.3 108 6-122 1-120 (196)
95 PF13238 AAA_18: AAA domain; P 99.1 1.1E-10 2.5E-15 74.6 6.0 22 9-30 1-22 (129)
96 KOG0780|consensus 99.1 3.7E-10 7.9E-15 83.7 9.2 100 3-109 98-204 (483)
97 PRK14730 coaE dephospho-CoA ki 99.1 2.6E-10 5.7E-15 78.6 8.1 123 7-139 2-147 (195)
98 KOG4238|consensus 99.1 3.1E-10 6.8E-15 83.7 8.5 121 6-138 50-170 (627)
99 cd02024 NRK1 Nicotinamide ribo 99.1 3.1E-10 6.6E-15 77.7 7.9 36 8-47 1-36 (187)
100 PRK03731 aroL shikimate kinase 99.1 1.8E-10 3.9E-15 77.7 5.7 34 7-40 3-36 (171)
101 PRK14737 gmk guanylate kinase; 99.1 3.1E-09 6.7E-14 72.8 11.8 28 4-31 2-29 (186)
102 TIGR00235 udk uridine kinase. 99.1 1.2E-09 2.6E-14 76.0 9.8 43 1-45 1-43 (207)
103 COG1102 Cmk Cytidylate kinase 99.1 2E-09 4.2E-14 71.2 10.2 110 7-140 1-113 (179)
104 TIGR01425 SRP54_euk signal rec 99.1 1.1E-09 2.5E-14 83.2 10.4 96 5-108 99-202 (429)
105 PRK08154 anaerobic benzoate ca 99.1 7.7E-10 1.7E-14 81.4 9.1 33 4-36 131-163 (309)
106 TIGR02322 phosphon_PhnN phosph 99.1 2.2E-09 4.8E-14 72.9 10.6 26 7-32 2-27 (179)
107 PRK13975 thymidylate kinase; P 99.1 3.4E-09 7.4E-14 72.9 11.5 27 6-32 2-28 (196)
108 PRK05439 pantothenate kinase; 99.1 1.9E-09 4E-14 79.1 10.3 44 4-47 84-129 (311)
109 PRK04182 cytidylate kinase; Pr 99.1 7.1E-10 1.5E-14 75.0 7.3 30 7-36 1-30 (180)
110 PRK14733 coaE dephospho-CoA ki 99.1 1.4E-09 3E-14 75.4 8.7 130 3-140 3-151 (204)
111 PRK00081 coaE dephospho-CoA ki 99.0 2.6E-10 5.7E-15 78.6 4.3 119 6-140 2-147 (194)
112 KOG4622|consensus 99.0 3.1E-09 6.6E-14 72.5 9.3 121 7-139 2-143 (291)
113 PLN02924 thymidylate kinase 99.0 1.3E-08 2.8E-13 71.5 12.8 121 5-135 15-153 (220)
114 PRK10867 signal recognition pa 99.0 2.3E-09 5.1E-14 81.8 9.6 89 4-100 98-195 (433)
115 PLN02199 shikimate kinase 99.0 2.8E-09 6E-14 77.3 9.1 113 6-137 102-214 (303)
116 cd02022 DPCK Dephospho-coenzym 99.0 2E-09 4.3E-14 73.3 7.8 32 8-40 1-32 (179)
117 TIGR02173 cyt_kin_arch cytidyl 99.0 2.2E-09 4.7E-14 72.1 7.9 110 7-140 1-114 (171)
118 COG3896 Chloramphenicol 3-O-ph 99.0 1.2E-08 2.6E-13 67.3 11.0 130 5-140 22-162 (205)
119 cd02025 PanK Pantothenate kina 99.0 2.9E-09 6.3E-14 74.8 8.8 39 8-46 1-41 (220)
120 PRK05416 glmZ(sRNA)-inactivati 99.0 1.4E-08 3E-13 73.9 12.5 97 3-137 3-105 (288)
121 PRK00771 signal recognition pa 99.0 3.7E-09 8E-14 80.9 9.5 90 4-102 93-189 (437)
122 PRK00300 gmk guanylate kinase; 99.0 1.5E-08 3.3E-13 70.1 11.7 27 5-31 4-30 (205)
123 TIGR00152 dephospho-CoA kinase 99.0 1.8E-09 3.9E-14 74.0 6.9 33 8-40 1-33 (188)
124 PLN02842 nucleotide kinase 99.0 9.3E-10 2E-14 84.9 5.6 118 10-140 1-123 (505)
125 cd02020 CMPK Cytidine monophos 99.0 1.9E-09 4.1E-14 70.6 6.3 34 8-41 1-34 (147)
126 PRK09270 nucleoside triphospha 99.0 1.4E-08 3E-13 71.7 11.0 43 4-46 31-74 (229)
127 PLN02348 phosphoribulokinase 99.0 9.7E-09 2.1E-13 77.1 10.4 43 4-46 47-104 (395)
128 TIGR00959 ffh signal recogniti 98.9 2.9E-08 6.3E-13 75.8 12.9 89 4-100 97-194 (428)
129 PRK14738 gmk guanylate kinase; 98.9 4.4E-08 9.6E-13 68.1 12.1 27 3-29 10-36 (206)
130 TIGR03263 guanyl_kin guanylate 98.9 3.2E-08 7E-13 67.1 11.0 26 7-32 2-27 (180)
131 COG4185 Uncharacterized protei 98.9 2.8E-08 6.1E-13 65.7 9.9 119 5-141 1-120 (187)
132 cd02023 UMPK Uridine monophosp 98.9 7.5E-09 1.6E-13 71.4 7.6 38 8-47 1-38 (198)
133 PRK13974 thymidylate kinase; P 98.9 9.5E-08 2.1E-12 66.7 13.1 30 5-34 2-31 (212)
134 PF01202 SKI: Shikimate kinase 98.9 1.6E-09 3.4E-14 72.4 3.9 104 15-140 1-107 (158)
135 TIGR00064 ftsY signal recognit 98.9 2.4E-08 5.2E-13 72.3 10.2 45 4-48 70-114 (272)
136 PRK10416 signal recognition pa 98.9 2.1E-08 4.6E-13 74.0 9.8 43 5-47 113-155 (318)
137 PRK14974 cell division protein 98.9 7E-08 1.5E-12 71.7 12.4 45 5-49 139-183 (336)
138 cd01673 dNK Deoxyribonucleosid 98.9 6.9E-08 1.5E-12 66.3 11.6 25 8-32 1-25 (193)
139 PRK13951 bifunctional shikimat 98.9 1.3E-09 2.8E-14 84.5 2.8 108 8-138 2-112 (488)
140 COG2074 2-phosphoglycerate kin 98.9 4.5E-08 9.8E-13 69.1 10.1 127 4-140 87-232 (299)
141 cd03115 SRP The signal recogni 98.9 2.2E-07 4.8E-12 62.7 13.2 42 7-48 1-42 (173)
142 PF08303 tRNA_lig_kinase: tRNA 98.8 1.2E-07 2.7E-12 63.0 11.5 78 8-115 1-80 (168)
143 PRK14731 coaE dephospho-CoA ki 98.8 1.3E-08 2.9E-13 70.9 7.1 33 5-38 4-36 (208)
144 PLN02422 dephospho-CoA kinase 98.8 2.4E-08 5.2E-13 70.5 8.2 118 7-140 2-148 (232)
145 COG0237 CoaE Dephospho-CoA kin 98.8 2.9E-08 6.3E-13 68.7 8.2 38 5-48 1-38 (201)
146 PRK14732 coaE dephospho-CoA ki 98.8 1.4E-08 3.1E-13 70.1 6.3 117 8-140 1-144 (196)
147 COG0552 FtsY Signal recognitio 98.8 4.6E-08 1E-12 71.6 9.0 90 4-101 137-234 (340)
148 PRK11889 flhF flagellar biosyn 98.8 5.2E-08 1.1E-12 73.4 9.3 44 5-48 240-283 (436)
149 PRK07933 thymidylate kinase; V 98.8 1.1E-07 2.3E-12 66.6 10.0 37 7-43 1-37 (213)
150 PRK15453 phosphoribulokinase; 98.8 8.9E-09 1.9E-13 74.2 4.6 43 5-47 4-46 (290)
151 PRK12726 flagellar biosynthesi 98.8 7.1E-08 1.5E-12 72.4 9.4 87 5-102 205-299 (407)
152 PF00625 Guanylate_kin: Guanyl 98.8 2.4E-07 5.2E-12 63.2 11.3 28 5-32 1-28 (183)
153 PRK12724 flagellar biosynthesi 98.8 4.2E-07 9.1E-12 69.1 13.3 45 5-49 222-267 (432)
154 PRK14734 coaE dephospho-CoA ki 98.7 1.3E-08 2.9E-13 70.4 4.6 31 7-38 2-32 (200)
155 smart00072 GuKc Guanylate kina 98.7 9.6E-08 2.1E-12 65.3 8.7 25 6-30 2-26 (184)
156 PRK13477 bifunctional pantoate 98.7 1E-07 2.2E-12 74.3 9.7 36 5-40 283-318 (512)
157 PLN02165 adenylate isopentenyl 98.7 1.6E-07 3.5E-12 69.4 10.2 33 5-37 42-74 (334)
158 cd02019 NK Nucleoside/nucleoti 98.7 2.2E-08 4.7E-13 57.7 4.3 23 8-30 1-23 (69)
159 cd02030 NDUO42 NADH:Ubiquinone 98.7 4.7E-07 1E-11 63.6 11.8 27 8-34 1-27 (219)
160 COG0125 Tmk Thymidylate kinase 98.7 6E-07 1.3E-11 62.5 11.9 130 4-140 1-150 (208)
161 PRK07429 phosphoribulokinase; 98.7 4.8E-07 1E-11 67.1 11.8 40 4-45 6-45 (327)
162 PF00004 AAA: ATPase family as 98.7 2.1E-07 4.6E-12 59.5 8.8 23 9-31 1-23 (132)
163 KOG1533|consensus 98.7 2.2E-07 4.8E-12 65.1 9.3 40 6-45 2-41 (290)
164 COG1428 Deoxynucleoside kinase 98.7 8.8E-08 1.9E-12 66.1 6.9 28 6-33 4-31 (216)
165 PTZ00451 dephospho-CoA kinase; 98.7 3.5E-08 7.5E-13 70.2 4.8 34 7-40 2-35 (244)
166 cd02029 PRK_like Phosphoribulo 98.7 2.2E-08 4.8E-13 71.7 3.7 40 8-47 1-40 (277)
167 PF01121 CoaE: Dephospho-CoA k 98.6 4E-08 8.8E-13 66.9 4.4 118 7-140 1-145 (180)
168 PLN02318 phosphoribulokinase/u 98.6 3.2E-07 6.9E-12 72.3 9.8 38 5-46 64-101 (656)
169 PRK00091 miaA tRNA delta(2)-is 98.6 5.3E-08 1.1E-12 71.5 5.3 36 4-44 2-37 (307)
170 KOG1532|consensus 98.6 3.6E-07 7.7E-12 65.5 9.0 45 4-48 17-61 (366)
171 PF03668 ATP_bind_2: P-loop AT 98.6 1.2E-06 2.7E-11 63.2 11.8 98 7-141 2-105 (284)
172 KOG1534|consensus 98.6 2E-07 4.4E-12 64.3 7.4 44 4-47 1-44 (273)
173 KOG2134|consensus 98.6 9.6E-08 2.1E-12 70.9 6.2 99 7-138 270-368 (422)
174 KOG3220|consensus 98.6 8.2E-07 1.8E-11 60.8 10.2 117 7-139 2-147 (225)
175 COG2019 AdkA Archaeal adenylat 98.6 9.6E-07 2.1E-11 58.9 10.2 39 6-48 4-42 (189)
176 cd00071 GMPK Guanosine monopho 98.6 2.6E-07 5.7E-12 60.3 7.4 24 8-31 1-24 (137)
177 PRK12723 flagellar biosynthesi 98.6 4.1E-07 8.9E-12 68.8 9.4 45 5-49 173-221 (388)
178 TIGR03499 FlhF flagellar biosy 98.6 2.6E-07 5.7E-12 67.2 8.1 44 5-48 193-238 (282)
179 COG1703 ArgK Putative periplas 98.6 1.7E-07 3.7E-12 67.8 6.9 41 4-44 49-89 (323)
180 PRK05800 cobU adenosylcobinami 98.6 7E-07 1.5E-11 60.4 9.6 25 7-31 2-26 (170)
181 COG0283 Cmk Cytidylate kinase 98.6 4.7E-08 1E-12 67.6 3.8 34 7-40 5-38 (222)
182 PRK06893 DNA replication initi 98.6 1.1E-06 2.4E-11 62.1 10.9 36 8-43 41-76 (229)
183 TIGR00554 panK_bact pantothena 98.6 8E-08 1.7E-12 70.0 5.1 44 4-47 60-105 (290)
184 cd01120 RecA-like_NTPases RecA 98.6 1E-06 2.2E-11 58.1 10.0 37 8-44 1-37 (165)
185 PRK10751 molybdopterin-guanine 98.6 8.8E-08 1.9E-12 64.7 4.9 42 1-42 1-42 (173)
186 cd01394 radB RadB. The archaea 98.6 1.9E-06 4.2E-11 60.2 11.6 38 6-43 19-56 (218)
187 PRK03333 coaE dephospho-CoA ki 98.6 1.9E-07 4.1E-12 70.9 6.8 33 7-40 2-34 (395)
188 COG1419 FlhF Flagellar GTP-bin 98.6 3.3E-06 7.1E-11 63.7 13.2 105 5-122 202-318 (407)
189 KOG3308|consensus 98.6 1.1E-07 2.5E-12 65.0 5.0 41 4-48 2-42 (225)
190 PRK00023 cmk cytidylate kinase 98.6 8.3E-08 1.8E-12 67.7 4.3 37 4-40 2-38 (225)
191 PRK13976 thymidylate kinase; P 98.6 4.7E-06 1E-10 58.2 13.0 27 7-33 1-27 (209)
192 PF03029 ATP_bind_1: Conserved 98.6 6.7E-08 1.5E-12 68.6 3.8 36 11-46 1-36 (238)
193 PLN02796 D-glycerate 3-kinase 98.5 1.1E-07 2.4E-12 70.4 4.8 43 4-46 98-140 (347)
194 COG3709 Uncharacterized compon 98.5 1.6E-06 3.5E-11 57.6 9.6 122 5-142 4-139 (192)
195 PRK08084 DNA replication initi 98.5 3.1E-06 6.7E-11 60.1 11.7 38 7-44 46-83 (235)
196 PLN02840 tRNA dimethylallyltra 98.5 3.2E-07 6.9E-12 69.8 7.0 29 5-33 20-48 (421)
197 PLN03046 D-glycerate 3-kinase; 98.5 1.3E-07 2.8E-12 71.7 4.9 42 5-46 211-252 (460)
198 COG0194 Gmk Guanylate kinase [ 98.5 2.1E-06 4.6E-11 58.3 10.1 26 5-30 3-28 (191)
199 TIGR00017 cmk cytidylate kinas 98.5 8.5E-08 1.8E-12 67.2 3.5 35 5-39 1-35 (217)
200 COG1618 Predicted nucleotide k 98.5 1.2E-07 2.7E-12 62.8 3.9 43 5-47 4-46 (179)
201 PRK05703 flhF flagellar biosyn 98.5 7.6E-06 1.6E-10 62.8 13.8 43 6-48 221-265 (424)
202 PRK09435 membrane ATPase/prote 98.5 2.1E-07 4.6E-12 69.0 4.8 41 4-44 54-94 (332)
203 PLN02748 tRNA dimethylallyltra 98.5 5.6E-07 1.2E-11 69.4 7.1 35 5-44 21-55 (468)
204 PRK09361 radB DNA repair and r 98.5 8.1E-06 1.8E-10 57.3 12.5 38 6-43 23-60 (225)
205 PF13401 AAA_22: AAA domain; P 98.5 7E-07 1.5E-11 57.2 6.6 27 5-31 3-29 (131)
206 TIGR02237 recomb_radB DNA repa 98.5 6.5E-06 1.4E-10 57.1 11.9 39 6-44 12-50 (209)
207 PRK09087 hypothetical protein; 98.5 1.8E-06 3.9E-11 60.9 9.1 30 8-37 46-75 (226)
208 smart00382 AAA ATPases associa 98.5 2E-07 4.4E-12 59.6 3.9 38 6-43 2-39 (148)
209 KOG3078|consensus 98.5 5.2E-07 1.1E-11 63.4 5.9 118 6-139 15-139 (235)
210 PRK05973 replicative DNA helic 98.4 4.1E-07 8.9E-12 64.5 5.4 38 7-44 65-102 (237)
211 PRK14964 DNA polymerase III su 98.4 7.3E-06 1.6E-10 63.8 12.6 28 6-33 35-62 (491)
212 COG4240 Predicted kinase [Gene 98.4 2.7E-07 5.8E-12 64.6 4.3 42 5-46 49-91 (300)
213 PRK04296 thymidine kinase; Pro 98.4 3.5E-06 7.7E-11 57.9 9.8 36 6-41 2-37 (190)
214 PRK14722 flhF flagellar biosyn 98.4 4.8E-06 1E-10 62.7 11.0 44 5-48 136-181 (374)
215 PRK08727 hypothetical protein; 98.4 7.7E-06 1.7E-10 58.0 11.5 39 7-45 42-80 (233)
216 cd01124 KaiC KaiC is a circadi 98.4 1.1E-05 2.3E-10 54.9 11.8 36 8-43 1-36 (187)
217 cd00009 AAA The AAA+ (ATPases 98.4 1.4E-05 3.1E-10 51.3 11.9 37 6-42 19-55 (151)
218 COG4619 ABC-type uncharacteriz 98.4 5.2E-06 1.1E-10 55.8 9.8 25 6-30 29-53 (223)
219 PHA00729 NTP-binding motif con 98.4 5.6E-07 1.2E-11 63.2 5.5 27 5-31 16-42 (226)
220 PRK14956 DNA polymerase III su 98.4 7.2E-06 1.6E-10 63.5 11.9 28 6-33 40-67 (484)
221 PRK12377 putative replication 98.4 4E-06 8.7E-11 59.9 9.8 42 7-48 102-143 (248)
222 PF13173 AAA_14: AAA domain 98.4 5.9E-06 1.3E-10 53.1 9.7 38 6-44 2-39 (128)
223 PRK14490 putative bifunctional 98.4 4.1E-07 8.8E-12 68.6 4.9 37 4-41 3-39 (369)
224 KOG0744|consensus 98.4 6E-07 1.3E-11 65.8 5.5 25 7-31 178-202 (423)
225 PRK13768 GTPase; Provisional 98.4 4.3E-07 9.3E-12 65.1 4.6 40 5-44 1-40 (253)
226 smart00763 AAA_PrkA PrkA AAA d 98.4 3.1E-07 6.8E-12 68.4 4.0 28 5-32 77-104 (361)
227 PRK14962 DNA polymerase III su 98.4 1.3E-05 2.7E-10 62.4 12.8 27 6-32 36-62 (472)
228 PF03308 ArgK: ArgK protein; 98.4 4.5E-07 9.8E-12 64.6 4.4 41 5-45 28-68 (266)
229 cd01122 GP4d_helicase GP4d_hel 98.4 1.4E-05 3E-10 57.6 12.1 37 7-43 31-68 (271)
230 PRK12269 bifunctional cytidyla 98.4 2E-07 4.4E-12 76.5 2.8 36 2-37 30-65 (863)
231 TIGR02012 tigrfam_recA protein 98.4 5E-06 1.1E-10 61.5 9.8 38 6-43 55-92 (321)
232 PRK06731 flhF flagellar biosyn 98.4 2.3E-05 5E-10 56.7 13.0 43 6-48 75-117 (270)
233 PF02223 Thymidylate_kin: Thym 98.4 4.2E-06 9.1E-11 57.1 8.8 121 11-140 1-141 (186)
234 PRK14493 putative bifunctional 98.4 1.4E-06 2.9E-11 63.2 6.6 37 7-44 2-38 (274)
235 CHL00181 cbbX CbbX; Provisiona 98.4 1.1E-05 2.4E-10 58.9 11.3 28 6-33 59-86 (287)
236 TIGR02881 spore_V_K stage V sp 98.4 1E-05 2.3E-10 58.2 11.1 27 6-32 42-68 (261)
237 COG1936 Predicted nucleotide k 98.4 3.3E-07 7.2E-12 61.4 3.1 26 7-33 1-26 (180)
238 PRK14723 flhF flagellar biosyn 98.4 7.9E-06 1.7E-10 66.4 11.4 43 6-48 185-229 (767)
239 PRK06526 transposase; Provisio 98.4 8.6E-06 1.9E-10 58.5 10.4 42 6-47 98-139 (254)
240 TIGR02880 cbbX_cfxQ probable R 98.3 1.2E-05 2.6E-10 58.7 11.1 29 7-35 59-87 (284)
241 PF13521 AAA_28: AAA domain; P 98.3 7.7E-06 1.7E-10 54.7 9.4 21 9-29 2-22 (163)
242 PRK05642 DNA replication initi 98.3 8.3E-06 1.8E-10 57.9 9.9 40 7-46 46-85 (234)
243 PRK08181 transposase; Validate 98.3 4.6E-06 1E-10 60.3 8.6 43 6-48 106-148 (269)
244 PRK14960 DNA polymerase III su 98.3 2.3E-05 4.9E-10 62.8 13.1 28 6-33 37-64 (702)
245 TIGR03878 thermo_KaiC_2 KaiC d 98.3 2.2E-05 4.7E-10 56.5 12.0 38 6-43 36-73 (259)
246 PRK05896 DNA polymerase III su 98.3 2.8E-05 6E-10 61.8 13.2 29 6-34 38-66 (605)
247 PRK13886 conjugal transfer pro 98.3 1.8E-05 3.9E-10 56.3 11.0 115 4-128 1-125 (241)
248 PRK08939 primosomal protein Dn 98.3 3.3E-05 7.2E-10 56.9 12.7 43 6-48 156-198 (306)
249 COG1072 CoaA Panthothenate kin 98.3 7.4E-06 1.6E-10 58.8 8.8 43 3-45 79-123 (283)
250 PRK14961 DNA polymerase III su 98.3 2.3E-05 5E-10 59.0 12.1 27 6-32 38-64 (363)
251 PRK06620 hypothetical protein; 98.3 4.6E-06 1E-10 58.4 7.8 25 7-31 45-69 (214)
252 TIGR00176 mobB molybdopterin-g 98.3 8.8E-07 1.9E-11 59.0 3.8 36 8-43 1-36 (155)
253 PRK14958 DNA polymerase III su 98.3 2.3E-05 5E-10 61.5 12.1 28 6-33 38-65 (509)
254 cd03116 MobB Molybdenum is an 98.3 1.3E-06 2.8E-11 58.4 4.5 37 7-43 2-38 (159)
255 PRK14957 DNA polymerase III su 98.3 3E-05 6.4E-10 61.2 12.6 27 6-32 38-64 (546)
256 PF01695 IstB_IS21: IstB-like 98.3 5.1E-06 1.1E-10 56.6 7.4 44 6-49 47-90 (178)
257 PRK08116 hypothetical protein; 98.3 2.7E-05 5.8E-10 56.4 11.5 40 7-46 115-154 (268)
258 TIGR03877 thermo_KaiC_1 KaiC d 98.3 1.7E-05 3.6E-10 56.4 10.3 40 5-44 20-59 (237)
259 TIGR00750 lao LAO/AO transport 98.3 1.3E-06 2.9E-11 64.1 4.8 42 4-45 32-73 (300)
260 cd00983 recA RecA is a bacter 98.3 1.3E-05 2.9E-10 59.3 9.7 37 6-42 55-91 (325)
261 PRK09183 transposase/IS protei 98.3 3.6E-05 7.7E-10 55.5 11.7 39 7-45 103-141 (259)
262 cd01121 Sms Sms (bacterial rad 98.3 2.4E-05 5.1E-10 59.1 11.2 38 6-43 82-119 (372)
263 TIGR00390 hslU ATP-dependent p 98.2 8.4E-07 1.8E-11 67.4 3.4 34 5-38 46-79 (441)
264 PF03205 MobB: Molybdopterin g 98.2 1.4E-06 2.9E-11 57.1 3.8 36 7-42 1-36 (140)
265 PF05496 RuvB_N: Holliday junc 98.2 8.9E-07 1.9E-11 62.0 3.1 27 7-33 51-77 (233)
266 TIGR00174 miaA tRNA isopenteny 98.2 2.4E-06 5.3E-11 62.2 5.4 32 8-44 1-32 (287)
267 PRK08533 flagellar accessory p 98.2 4.7E-05 1E-09 53.9 11.9 38 6-43 24-61 (230)
268 PRK12727 flagellar biosynthesi 98.2 3.8E-05 8.3E-10 60.2 12.1 43 6-48 350-394 (559)
269 PRK06645 DNA polymerase III su 98.2 3.9E-05 8.4E-10 60.1 12.3 28 6-33 43-70 (507)
270 PLN02772 guanylate kinase 98.2 3.3E-05 7.2E-10 58.4 11.5 27 5-31 134-160 (398)
271 TIGR00150 HI0065_YjeE ATPase, 98.2 1.7E-06 3.6E-11 56.1 4.0 28 6-33 22-49 (133)
272 KOG3877|consensus 98.2 6.2E-05 1.3E-09 54.4 12.1 41 5-45 70-113 (393)
273 PRK06835 DNA replication prote 98.2 4E-05 8.6E-10 57.0 11.6 41 7-47 184-224 (329)
274 TIGR03420 DnaA_homol_Hda DnaA 98.2 2.4E-06 5.2E-11 59.9 5.0 41 5-45 37-77 (226)
275 PRK09518 bifunctional cytidyla 98.2 1.1E-06 2.5E-11 71.3 3.7 33 8-40 3-35 (712)
276 PRK07003 DNA polymerase III su 98.2 4E-05 8.7E-10 62.3 12.1 28 6-33 38-65 (830)
277 COG1660 Predicted P-loop-conta 98.2 4.7E-05 1E-09 54.3 11.0 100 7-140 2-105 (286)
278 PRK14965 DNA polymerase III su 98.2 4.9E-05 1.1E-09 60.5 12.5 28 6-33 38-65 (576)
279 PRK12422 chromosomal replicati 98.2 5.7E-05 1.2E-09 58.4 12.5 38 8-45 143-180 (445)
280 PRK14729 miaA tRNA delta(2)-is 98.2 1.7E-05 3.8E-10 58.1 9.2 34 6-45 4-37 (300)
281 PF07728 AAA_5: AAA domain (dy 98.2 1.5E-06 3.3E-11 56.5 3.3 23 9-31 2-24 (139)
282 PRK05201 hslU ATP-dependent pr 98.2 1.6E-06 3.5E-11 65.9 3.8 33 6-38 50-82 (443)
283 PF03266 NTPase_1: NTPase; In 98.2 1.6E-06 3.4E-11 58.5 3.4 32 9-40 2-33 (168)
284 PRK14949 DNA polymerase III su 98.2 4.2E-05 9.2E-10 63.1 12.0 28 6-33 38-65 (944)
285 TIGR01618 phage_P_loop phage n 98.2 8.9E-06 1.9E-10 57.1 7.2 22 6-27 12-33 (220)
286 COG1763 MobB Molybdopterin-gua 98.2 2.4E-06 5.1E-11 57.1 4.1 39 5-43 1-39 (161)
287 KOG1384|consensus 98.2 3.4E-05 7.4E-10 56.6 10.3 132 5-139 6-159 (348)
288 PRK09354 recA recombinase A; P 98.2 2E-05 4.3E-10 58.9 9.3 38 6-43 60-97 (349)
289 PRK13695 putative NTPase; Prov 98.2 3.3E-05 7.2E-10 52.2 9.8 30 7-36 1-30 (174)
290 PRK09111 DNA polymerase III su 98.2 6.3E-05 1.4E-09 60.1 12.6 29 6-34 46-74 (598)
291 TIGR02655 circ_KaiC circadian 98.2 1E-05 2.2E-10 63.2 8.0 39 6-44 263-301 (484)
292 PF07724 AAA_2: AAA domain (Cd 98.2 5.3E-06 1.1E-10 56.1 5.6 41 6-46 3-44 (171)
293 cd00984 DnaB_C DnaB helicase C 98.2 2.5E-05 5.4E-10 55.3 9.3 39 6-44 13-52 (242)
294 PRK11823 DNA repair protein Ra 98.2 5.2E-05 1.1E-09 58.6 11.5 39 6-44 80-118 (446)
295 PRK12323 DNA polymerase III su 98.2 7.1E-05 1.5E-09 60.0 12.4 28 6-33 38-65 (700)
296 PRK08099 bifunctional DNA-bind 98.1 1.5E-05 3.3E-10 60.7 8.1 31 3-33 216-246 (399)
297 PRK00149 dnaA chromosomal repl 98.1 6E-05 1.3E-09 58.4 11.6 39 8-46 150-190 (450)
298 PRK14963 DNA polymerase III su 98.1 6.6E-05 1.4E-09 58.9 11.8 29 5-33 35-63 (504)
299 PF13481 AAA_25: AAA domain; P 98.1 6.6E-05 1.4E-09 51.3 10.6 26 6-31 32-57 (193)
300 KOG0730|consensus 98.1 2.9E-05 6.3E-10 61.5 9.6 31 5-35 467-497 (693)
301 PRK06067 flagellar accessory p 98.1 5.7E-05 1.2E-09 53.4 10.4 40 5-44 24-63 (234)
302 cd03114 ArgK-like The function 98.1 3E-06 6.5E-11 56.0 3.5 37 8-44 1-37 (148)
303 cd02034 CooC The accessory pro 98.1 4.3E-06 9.4E-11 53.0 4.1 36 9-44 2-37 (116)
304 PRK14951 DNA polymerase III su 98.1 9.2E-05 2E-09 59.3 12.3 29 6-34 38-66 (618)
305 PF00910 RNA_helicase: RNA hel 98.1 2.4E-06 5.1E-11 53.4 2.8 23 9-31 1-23 (107)
306 PRK14952 DNA polymerase III su 98.1 0.00011 2.3E-09 58.6 12.6 28 6-33 35-62 (584)
307 PF00308 Bac_DnaA: Bacterial d 98.1 0.00019 4.1E-09 50.4 12.6 41 8-48 36-78 (219)
308 PRK07994 DNA polymerase III su 98.1 7.6E-05 1.6E-09 60.0 11.7 28 6-33 38-65 (647)
309 KOG0733|consensus 98.1 2.6E-05 5.6E-10 61.6 8.7 32 5-36 222-253 (802)
310 TIGR00416 sms DNA repair prote 98.1 2.8E-05 6.1E-10 60.2 9.0 38 6-43 94-131 (454)
311 PF13245 AAA_19: Part of AAA d 98.1 4.5E-06 9.7E-11 49.0 3.6 25 6-30 10-34 (76)
312 cd02026 PRK Phosphoribulokinas 98.1 3.5E-06 7.7E-11 61.1 3.8 36 8-45 1-36 (273)
313 PRK06921 hypothetical protein; 98.1 7.5E-05 1.6E-09 54.0 10.6 39 6-44 117-156 (266)
314 COG1855 ATPase (PilT family) [ 98.1 2.8E-06 6.1E-11 64.8 3.2 29 7-35 264-292 (604)
315 TIGR01650 PD_CobS cobaltochela 98.1 3E-06 6.4E-11 62.6 3.3 29 7-35 65-93 (327)
316 COG1222 RPT1 ATP-dependent 26S 98.1 3.4E-05 7.3E-10 57.4 8.7 31 5-35 184-214 (406)
317 TIGR03689 pup_AAA proteasome A 98.1 2.2E-05 4.9E-10 61.4 8.2 29 5-33 215-243 (512)
318 PRK14959 DNA polymerase III su 98.1 0.00012 2.6E-09 58.5 12.4 28 6-33 38-65 (624)
319 COG0378 HypB Ni2+-binding GTPa 98.1 5.2E-06 1.1E-10 56.7 4.1 41 4-45 10-51 (202)
320 cd04163 Era Era subfamily. Er 98.1 2.1E-05 4.5E-10 51.7 7.0 24 5-28 2-25 (168)
321 PRK14950 DNA polymerase III su 98.1 0.0001 2.2E-09 58.9 11.8 28 6-33 38-65 (585)
322 PRK08691 DNA polymerase III su 98.1 0.00015 3.3E-09 58.5 12.5 28 6-33 38-65 (709)
323 cd01131 PilT Pilus retraction 98.1 7.1E-06 1.5E-10 56.7 4.6 26 7-32 2-27 (198)
324 PRK14088 dnaA chromosomal repl 98.0 0.00014 3.1E-09 56.2 12.0 40 8-47 132-173 (440)
325 TIGR03707 PPK2_P_aer polyphosp 98.0 0.00015 3.3E-09 51.2 11.1 110 5-140 30-158 (230)
326 cd01393 recA_like RecA is a b 98.0 0.00023 5E-09 49.9 12.2 29 6-34 19-47 (226)
327 PRK03992 proteasome-activating 98.0 3.8E-06 8.2E-11 63.8 3.3 29 5-33 164-192 (389)
328 COG0324 MiaA tRNA delta(2)-iso 98.0 3.7E-05 7.9E-10 56.4 8.2 36 5-45 2-37 (308)
329 PRK04328 hypothetical protein; 98.0 6.3E-05 1.4E-09 53.9 9.4 39 5-43 22-60 (249)
330 PRK14489 putative bifunctional 98.0 6.1E-06 1.3E-10 62.2 4.4 39 5-43 204-242 (366)
331 PF05729 NACHT: NACHT domain 98.0 5.1E-06 1.1E-10 55.0 3.5 27 8-34 2-28 (166)
332 PLN03025 replication factor C 98.0 5.6E-05 1.2E-09 56.0 9.4 25 8-32 36-60 (319)
333 PRK05707 DNA polymerase III su 98.0 9E-05 1.9E-09 55.2 10.4 112 6-122 22-140 (328)
334 PRK07952 DNA replication prote 98.0 9E-06 1.9E-10 58.0 4.9 41 7-47 100-140 (244)
335 PLN00020 ribulose bisphosphate 98.0 3.8E-05 8.3E-10 57.7 8.3 37 5-44 147-183 (413)
336 PRK14086 dnaA chromosomal repl 98.0 9.5E-05 2.1E-09 58.9 10.9 39 8-46 316-356 (617)
337 PRK08903 DnaA regulatory inact 98.0 1E-05 2.2E-10 56.9 5.0 40 6-45 42-81 (227)
338 PRK14969 DNA polymerase III su 98.0 0.00015 3.3E-09 57.2 11.9 27 6-32 38-64 (527)
339 PF06309 Torsin: Torsin; Inte 98.0 9.7E-06 2.1E-10 51.9 4.3 38 3-40 50-87 (127)
340 PRK05342 clpX ATP-dependent pr 98.0 6.4E-06 1.4E-10 63.0 4.1 31 6-36 108-138 (412)
341 cd03221 ABCF_EF-3 ABCF_EF-3 E 98.0 0.00013 2.8E-09 47.9 9.8 93 6-119 26-120 (144)
342 TIGR01242 26Sp45 26S proteasom 98.0 4.8E-06 1E-10 62.7 3.4 31 5-35 155-185 (364)
343 KOG0781|consensus 98.0 3.2E-05 6.9E-10 59.4 7.7 48 4-51 376-423 (587)
344 CHL00195 ycf46 Ycf46; Provisio 98.0 5.2E-06 1.1E-10 64.7 3.6 32 5-36 258-289 (489)
345 COG1126 GlnQ ABC-type polar am 98.0 5.7E-06 1.2E-10 57.6 3.3 24 5-28 27-50 (240)
346 PF06745 KaiC: KaiC; InterPro 98.0 5.1E-05 1.1E-09 53.3 8.3 40 5-44 18-58 (226)
347 PF03796 DnaB_C: DnaB-like hel 98.0 0.00019 4.2E-09 51.5 11.4 39 6-44 19-58 (259)
348 KOG0733|consensus 98.0 2.5E-05 5.5E-10 61.7 7.2 30 6-35 545-574 (802)
349 PF02367 UPF0079: Uncharacteri 98.0 8.9E-06 1.9E-10 52.0 3.9 28 5-32 14-41 (123)
350 PRK14955 DNA polymerase III su 98.0 0.00021 4.5E-09 54.6 11.9 28 6-33 38-65 (397)
351 KOG0738|consensus 98.0 9.1E-05 2E-09 55.8 9.6 28 7-34 246-273 (491)
352 cd01983 Fer4_NifH The Fer4_Nif 98.0 8.6E-06 1.9E-10 49.0 3.6 34 8-41 1-34 (99)
353 CHL00176 ftsH cell division pr 98.0 0.00023 5E-09 57.4 12.5 30 5-34 215-244 (638)
354 PRK14494 putative molybdopteri 98.0 9.7E-06 2.1E-10 57.2 4.3 35 7-41 2-36 (229)
355 PRK14953 DNA polymerase III su 98.0 0.00024 5.3E-09 55.5 12.4 27 6-32 38-64 (486)
356 KOG1969|consensus 98.0 6.9E-06 1.5E-10 65.8 3.9 42 3-47 323-364 (877)
357 PRK07133 DNA polymerase III su 98.0 0.00021 4.6E-09 58.0 12.3 28 6-33 40-67 (725)
358 PRK07764 DNA polymerase III su 98.0 0.00021 4.5E-09 59.1 12.5 28 6-33 37-64 (824)
359 TIGR03015 pepcterm_ATPase puta 98.0 6.7E-06 1.5E-10 59.1 3.5 27 6-32 43-69 (269)
360 PTZ00454 26S protease regulato 98.0 5.8E-06 1.2E-10 63.0 3.2 30 5-34 178-207 (398)
361 TIGR03880 KaiC_arch_3 KaiC dom 98.0 0.00044 9.5E-09 48.5 12.6 39 6-44 16-54 (224)
362 TIGR02397 dnaX_nterm DNA polym 98.0 0.00033 7.2E-09 52.3 12.6 28 6-33 36-63 (355)
363 TIGR00635 ruvB Holliday juncti 98.0 8.5E-06 1.8E-10 59.7 4.0 27 6-32 30-56 (305)
364 TIGR00678 holB DNA polymerase 98.0 0.00021 4.5E-09 48.8 10.6 27 6-32 14-40 (188)
365 PRK06995 flhF flagellar biosyn 98.0 9.9E-06 2.1E-10 62.9 4.3 44 5-48 255-300 (484)
366 TIGR00362 DnaA chromosomal rep 98.0 0.00019 4.1E-09 54.9 11.2 39 8-46 138-178 (405)
367 PF02492 cobW: CobW/HypB/UreG, 98.0 1.2E-05 2.6E-10 54.7 4.3 34 8-42 2-35 (178)
368 PRK06647 DNA polymerase III su 98.0 0.00026 5.6E-09 56.3 12.2 28 6-33 38-65 (563)
369 COG3172 NadR Predicted ATPase/ 98.0 0.00042 9.2E-09 46.2 11.2 31 3-33 5-35 (187)
370 PF13191 AAA_16: AAA ATPase do 98.0 8.1E-06 1.8E-10 55.2 3.4 30 4-33 22-51 (185)
371 TIGR03708 poly_P_AMP_trns poly 98.0 0.00024 5.2E-09 55.4 11.7 111 4-140 38-167 (493)
372 PHA02544 44 clamp loader, smal 98.0 0.00026 5.7E-09 52.1 11.6 27 5-31 42-68 (316)
373 cd03238 ABC_UvrA The excision 98.0 0.00044 9.6E-09 47.0 11.8 22 6-27 21-42 (176)
374 PRK05563 DNA polymerase III su 98.0 0.0002 4.4E-09 56.9 11.5 28 6-33 38-65 (559)
375 TIGR03709 PPK2_rel_1 polyphosp 97.9 0.00027 5.8E-09 51.0 11.1 110 5-140 55-183 (264)
376 COG2884 FtsE Predicted ATPase 97.9 0.00017 3.6E-09 49.5 9.4 26 5-30 27-52 (223)
377 COG0466 Lon ATP-dependent Lon 97.9 7.7E-06 1.7E-10 65.4 3.4 34 4-37 348-381 (782)
378 PTZ00361 26 proteosome regulat 97.9 8.3E-06 1.8E-10 62.7 3.5 31 5-35 216-246 (438)
379 COG2256 MGS1 ATPase related to 97.9 7.2E-06 1.6E-10 61.6 3.0 28 8-35 50-77 (436)
380 PRK00080 ruvB Holliday junctio 97.9 1E-05 2.2E-10 60.1 3.8 27 6-32 51-77 (328)
381 PRK09112 DNA polymerase III su 97.9 0.0002 4.3E-09 53.8 10.7 27 6-32 45-71 (351)
382 PF03215 Rad17: Rad17 cell cyc 97.9 1.1E-05 2.3E-10 63.4 4.0 27 6-32 45-71 (519)
383 PF04665 Pox_A32: Poxvirus A32 97.9 0.00047 1E-08 49.1 11.9 29 6-34 13-41 (241)
384 TIGR00101 ureG urease accessor 97.9 1.8E-05 3.9E-10 54.8 4.8 37 6-43 1-37 (199)
385 PRK07471 DNA polymerase III su 97.9 0.00024 5.3E-09 53.6 11.0 29 5-33 40-68 (365)
386 TIGR02640 gas_vesic_GvpN gas v 97.9 8.3E-06 1.8E-10 58.8 3.0 27 7-33 22-48 (262)
387 TIGR01243 CDC48 AAA family ATP 97.9 4.8E-05 1E-09 62.2 7.6 29 5-33 486-514 (733)
388 PRK14721 flhF flagellar biosyn 97.9 0.00015 3.3E-09 55.5 9.8 44 5-48 190-235 (420)
389 cd04161 Arl2l1_Arl13_like Arl2 97.9 4.3E-05 9.2E-10 51.2 6.1 21 9-29 2-22 (167)
390 PF07726 AAA_3: ATPase family 97.9 3.4E-06 7.3E-11 54.2 0.6 27 9-35 2-28 (131)
391 COG1484 DnaC DNA replication p 97.9 2.1E-05 4.6E-10 56.5 4.8 44 6-49 105-148 (254)
392 PRK15455 PrkA family serine pr 97.9 1.2E-05 2.5E-10 63.5 3.7 28 5-32 102-129 (644)
393 PRK06851 hypothetical protein; 97.9 1.7E-05 3.6E-10 59.7 4.4 38 5-42 213-250 (367)
394 TIGR00073 hypB hydrogenase acc 97.9 2.1E-05 4.5E-10 54.7 4.6 39 3-42 19-57 (207)
395 TIGR00382 clpX endopeptidase C 97.9 1E-05 2.3E-10 61.7 3.3 29 6-34 116-144 (413)
396 PRK11860 bifunctional 3-phosph 97.9 7.3E-06 1.6E-10 66.2 2.6 34 7-40 443-476 (661)
397 cd00820 PEPCK_HprK Phosphoenol 97.9 1.2E-05 2.7E-10 50.1 3.0 21 7-27 16-36 (107)
398 PF03976 PPK2: Polyphosphate k 97.9 0.00011 2.3E-09 52.0 8.0 109 6-140 31-158 (228)
399 PRK06871 DNA polymerase III su 97.9 0.0003 6.6E-09 52.2 10.8 114 5-124 23-143 (325)
400 PHA03132 thymidine kinase; Pro 97.9 0.00085 1.8E-08 53.3 13.7 25 6-30 257-281 (580)
401 PRK14954 DNA polymerase III su 97.9 0.00044 9.5E-09 55.5 12.4 28 6-33 38-65 (620)
402 PRK14948 DNA polymerase III su 97.9 0.00029 6.2E-09 56.7 11.3 27 7-33 39-65 (620)
403 PRK00089 era GTPase Era; Revie 97.9 7E-05 1.5E-09 54.7 7.4 24 4-27 3-26 (292)
404 TIGR03598 GTPase_YsxC ribosome 97.9 0.00025 5.4E-09 48.0 9.6 26 4-29 16-41 (179)
405 cd03216 ABC_Carb_Monos_I This 97.9 0.00019 4.1E-09 48.1 8.9 25 6-30 26-50 (163)
406 PF01745 IPT: Isopentenyl tran 97.9 0.00043 9.3E-09 48.3 10.6 27 7-33 2-28 (233)
407 PRK08699 DNA polymerase III su 97.9 0.00033 7.1E-09 52.1 10.8 29 5-33 20-48 (325)
408 PRK07940 DNA polymerase III su 97.9 0.00036 7.7E-09 53.2 11.1 29 5-33 35-63 (394)
409 PRK06305 DNA polymerase III su 97.9 0.00037 7.9E-09 54.1 11.4 28 6-33 39-66 (451)
410 cd01918 HprK_C HprK/P, the bif 97.9 1.4E-05 2.9E-10 52.8 3.0 23 7-29 15-37 (149)
411 PRK06851 hypothetical protein; 97.9 2.5E-05 5.5E-10 58.7 4.7 36 5-40 29-64 (367)
412 TIGR01241 FtsH_fam ATP-depende 97.8 1.7E-05 3.7E-10 62.1 3.9 30 5-34 87-116 (495)
413 PRK08760 replicative DNA helic 97.8 0.00038 8.3E-09 54.3 11.1 39 6-44 229-268 (476)
414 cd01130 VirB11-like_ATPase Typ 97.8 1.8E-05 3.8E-10 54.2 3.4 26 6-31 25-50 (186)
415 KOG0739|consensus 97.8 9.2E-05 2E-09 54.2 7.0 26 7-32 167-192 (439)
416 PRK08451 DNA polymerase III su 97.8 0.00061 1.3E-08 53.8 12.1 27 6-32 36-62 (535)
417 PRK12402 replication factor C 97.8 2.7E-05 5.8E-10 57.7 4.5 26 8-33 38-63 (337)
418 TIGR02782 TrbB_P P-type conjug 97.8 3E-05 6.6E-10 56.9 4.6 27 6-32 132-158 (299)
419 PF13555 AAA_29: P-loop contai 97.8 2.9E-05 6.4E-10 43.5 3.5 23 8-30 25-47 (62)
420 PHA02575 1 deoxynucleoside mon 97.8 1.6E-05 3.5E-10 55.7 3.0 23 7-29 1-23 (227)
421 PRK04195 replication factor C 97.8 1.7E-05 3.8E-10 61.8 3.4 27 6-32 39-65 (482)
422 COG1223 Predicted ATPase (AAA+ 97.8 8.6E-05 1.9E-09 53.4 6.5 29 5-33 150-178 (368)
423 cd01895 EngA2 EngA2 subfamily. 97.8 0.00014 3E-09 48.2 7.3 24 6-29 2-25 (174)
424 PRK10463 hydrogenase nickel in 97.8 2.6E-05 5.6E-10 56.8 4.0 37 4-41 102-138 (290)
425 PRK13342 recombination factor 97.8 1.7E-05 3.7E-10 60.8 3.0 28 6-33 36-63 (413)
426 TIGR00665 DnaB replicative DNA 97.8 0.00061 1.3E-08 52.5 11.6 39 6-44 195-234 (434)
427 COG0467 RAD55 RecA-superfamily 97.8 3.7E-05 8E-10 55.3 4.6 41 5-45 22-62 (260)
428 cd04124 RabL2 RabL2 subfamily. 97.8 0.0001 2.3E-09 48.9 6.5 20 9-28 3-22 (161)
429 TIGR03600 phage_DnaB phage rep 97.8 0.001 2.2E-08 51.1 12.7 38 6-43 194-232 (421)
430 COG0470 HolB ATPase involved i 97.8 0.00047 1E-08 50.7 10.5 29 5-33 23-51 (325)
431 PRK13833 conjugal transfer pro 97.8 3.6E-05 7.9E-10 57.0 4.5 26 6-31 144-169 (323)
432 cd02035 ArsA ArsA ATPase funct 97.8 2.7E-05 5.9E-10 54.5 3.7 39 8-46 1-39 (217)
433 PF13177 DNA_pol3_delta2: DNA 97.8 0.00062 1.4E-08 45.6 10.1 115 6-125 19-139 (162)
434 KOG0734|consensus 97.8 7.2E-05 1.6E-09 58.5 6.1 26 6-31 337-362 (752)
435 PHA02244 ATPase-like protein 97.8 2E-05 4.4E-10 59.1 3.1 29 7-35 120-148 (383)
436 TIGR03881 KaiC_arch_4 KaiC dom 97.8 4.6E-05 9.9E-10 53.6 4.7 38 6-43 20-57 (229)
437 TIGR02525 plasmid_TraJ plasmid 97.8 3.5E-05 7.6E-10 58.2 4.3 26 7-32 150-175 (372)
438 TIGR00436 era GTP-binding prot 97.8 9.1E-05 2E-09 53.6 6.4 21 8-28 2-22 (270)
439 COG1100 GTPase SAR1 and relate 97.8 0.00018 3.9E-09 50.0 7.6 29 7-35 6-34 (219)
440 cd00154 Rab Rab family. Rab G 97.8 0.00025 5.4E-09 46.1 7.9 22 8-29 2-23 (159)
441 PF00931 NB-ARC: NB-ARC domain 97.8 4.2E-05 9.1E-10 55.4 4.5 26 4-29 17-42 (287)
442 PRK05564 DNA polymerase III su 97.8 0.00048 1E-08 50.9 10.1 28 5-32 25-52 (313)
443 PRK05636 replicative DNA helic 97.8 0.00069 1.5E-08 53.3 11.3 38 6-43 265-303 (505)
444 PRK12608 transcription termina 97.7 0.00056 1.2E-08 51.6 10.4 28 7-34 134-161 (380)
445 PRK14087 dnaA chromosomal repl 97.7 0.0005 1.1E-08 53.3 10.5 41 8-48 143-185 (450)
446 COG0802 Predicted ATPase or ki 97.7 5.1E-05 1.1E-09 49.8 4.3 38 5-42 24-62 (149)
447 PF10662 PduV-EutP: Ethanolami 97.7 2.4E-05 5.2E-10 51.3 2.7 22 8-29 3-24 (143)
448 COG1219 ClpX ATP-dependent pro 97.7 3E-05 6.5E-10 57.0 3.4 29 6-34 97-125 (408)
449 PF13086 AAA_11: AAA domain; P 97.7 5.3E-05 1.1E-09 52.8 4.6 23 8-30 19-41 (236)
450 COG1341 Predicted GTPase or GT 97.7 4.4E-05 9.6E-10 57.5 4.4 40 5-44 72-111 (398)
451 COG1220 HslU ATP-dependent pro 97.7 2.9E-05 6.2E-10 57.5 3.3 34 5-38 49-82 (444)
452 COG1124 DppF ABC-type dipeptid 97.7 2.7E-05 5.9E-10 55.0 3.0 23 7-29 34-56 (252)
453 PF13604 AAA_30: AAA domain; P 97.7 5.3E-05 1.2E-09 52.3 4.5 36 6-41 18-53 (196)
454 PRK13894 conjugal transfer ATP 97.7 4.8E-05 1E-09 56.4 4.5 25 6-30 148-172 (319)
455 PRK08006 replicative DNA helic 97.7 0.00091 2E-08 52.2 11.6 38 6-43 224-262 (471)
456 PRK13764 ATPase; Provisional 97.7 4.3E-05 9.3E-10 60.9 4.4 29 6-34 257-285 (602)
457 PRK10646 ADP-binding protein; 97.7 5E-05 1.1E-09 50.4 4.1 27 6-32 28-54 (153)
458 cd01128 rho_factor Transcripti 97.7 0.00041 9E-09 49.7 9.0 28 6-33 16-43 (249)
459 PRK14495 putative molybdopteri 97.7 4.6E-05 9.9E-10 58.3 4.2 37 7-43 2-38 (452)
460 PRK09519 recA DNA recombinatio 97.7 0.00033 7.1E-09 57.4 9.3 38 6-43 60-97 (790)
461 KOG0731|consensus 97.7 7.9E-05 1.7E-09 60.4 5.7 30 5-34 343-372 (774)
462 PF00005 ABC_tran: ABC transpo 97.7 2.9E-05 6.4E-10 50.1 2.8 25 6-30 11-35 (137)
463 PF08477 Miro: Miro-like prote 97.7 3.6E-05 7.7E-10 48.4 3.1 21 9-29 2-22 (119)
464 PRK07993 DNA polymerase III su 97.7 0.00088 1.9E-08 50.0 10.9 116 5-125 23-145 (334)
465 PF00437 T2SE: Type II/IV secr 97.7 5E-05 1.1E-09 54.8 4.2 28 6-33 127-154 (270)
466 TIGR01526 nadR_NMN_Atrans nico 97.7 3.6E-05 7.7E-10 57.2 3.5 27 7-33 163-189 (325)
467 TIGR00763 lon ATP-dependent pr 97.7 3.3E-05 7.2E-10 63.5 3.6 30 6-35 347-376 (775)
468 cd00544 CobU Adenosylcobinamid 97.7 3.2E-05 6.9E-10 52.2 2.9 23 8-30 1-23 (169)
469 cd00550 ArsA_ATPase Oxyanion-t 97.7 4.8E-05 1E-09 54.6 4.0 38 8-45 2-39 (254)
470 COG3911 Predicted ATPase [Gene 97.7 3.8E-05 8.3E-10 50.5 3.1 23 7-29 10-32 (183)
471 COG1117 PstB ABC-type phosphat 97.7 4E-05 8.6E-10 53.4 3.4 26 5-30 32-57 (253)
472 COG4136 ABC-type uncharacteriz 97.7 0.0014 3.1E-08 43.6 10.4 40 83-123 147-192 (213)
473 COG3839 MalK ABC-type sugar tr 97.7 3.1E-05 6.8E-10 57.5 3.1 21 7-27 30-50 (338)
474 TIGR01420 pilT_fam pilus retra 97.7 7E-05 1.5E-09 56.1 4.9 27 6-32 122-148 (343)
475 PRK14971 DNA polymerase III su 97.7 0.001 2.2E-08 53.6 11.6 28 6-33 39-66 (614)
476 PF08298 AAA_PrkA: PrkA AAA do 97.7 5E-05 1.1E-09 56.6 4.0 29 4-32 86-114 (358)
477 PF01078 Mg_chelatase: Magnesi 97.7 2.8E-05 6E-10 53.9 2.5 26 7-32 23-48 (206)
478 PRK03003 GTP-binding protein D 97.7 0.00015 3.2E-09 56.5 6.8 112 7-128 39-158 (472)
479 PF09140 MipZ: ATPase MipZ; I 97.7 0.00019 4.2E-09 51.1 6.7 42 7-48 2-43 (261)
480 PF01926 MMR_HSR1: 50S ribosom 97.7 3.7E-05 8.1E-10 48.3 2.9 20 9-28 2-21 (116)
481 cd01894 EngA1 EngA1 subfamily. 97.7 9.2E-05 2E-09 48.4 4.9 20 10-29 1-20 (157)
482 COG0464 SpoVK ATPases of the A 97.7 3E-05 6.4E-10 60.7 2.9 33 5-37 275-307 (494)
483 TIGR02524 dot_icm_DotB Dot/Icm 97.7 4.7E-05 1E-09 57.3 3.8 26 6-31 134-159 (358)
484 cd01123 Rad51_DMC1_radA Rad51_ 97.7 6.7E-05 1.5E-09 52.9 4.4 25 6-30 19-43 (235)
485 cd00881 GTP_translation_factor 97.7 0.00031 6.8E-09 47.3 7.6 23 9-31 2-24 (189)
486 cd01125 repA Hexameric Replica 97.7 0.00066 1.4E-08 48.2 9.5 24 7-30 2-25 (239)
487 PRK09302 circadian clock prote 97.7 0.0015 3.2E-08 51.5 12.2 38 6-43 273-310 (509)
488 PHA02624 large T antigen; Prov 97.7 4.8E-05 1E-09 60.3 3.9 28 4-31 429-456 (647)
489 PRK11331 5-methylcytosine-spec 97.7 3.6E-05 7.9E-10 59.2 3.2 26 6-31 194-219 (459)
490 PF03193 DUF258: Protein of un 97.7 4.7E-05 1E-09 50.9 3.4 24 6-29 35-58 (161)
491 PRK09376 rho transcription ter 97.7 0.00058 1.3E-08 51.9 9.5 31 8-38 171-201 (416)
492 KOG0071|consensus 97.7 7E-05 1.5E-09 48.7 3.9 97 5-118 16-117 (180)
493 PRK14491 putative bifunctional 97.7 6.5E-05 1.4E-09 60.1 4.6 38 5-42 9-46 (597)
494 COG4608 AppF ABC-type oligopep 97.7 0.00076 1.6E-08 48.5 9.5 26 6-31 39-64 (268)
495 PTZ00202 tuzin; Provisional 97.7 0.00071 1.5E-08 52.3 9.9 26 6-31 286-311 (550)
496 PRK08058 DNA polymerase III su 97.7 0.00096 2.1E-08 49.7 10.5 29 5-33 27-55 (329)
497 TIGR00767 rho transcription te 97.7 0.00047 1E-08 52.5 8.9 29 7-35 169-197 (415)
498 PF06068 TIP49: TIP49 C-termin 97.7 4.8E-05 1E-09 57.0 3.5 28 5-32 49-76 (398)
499 COG0489 Mrp ATPases involved i 97.7 0.0012 2.6E-08 47.8 10.7 106 4-109 56-187 (265)
500 TIGR01166 cbiO cobalt transpor 97.7 4.8E-05 1E-09 52.1 3.3 25 6-30 18-42 (190)
No 1
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=99.98 E-value=4.3e-31 Score=183.78 Aligned_cols=137 Identities=45% Similarity=0.719 Sum_probs=115.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+|+|+||.|||++|++|+++|.|.|+++.+|+.+++|+.........++|++.+.++..+|+.++..+++++..+
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~~~~~~~~ff~p~n~~~~~~R~~~a~~~l~dl~~~ 90 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLSGAPQDAEFFDPDNEEAKKLREQIAKEALEDLIEW 90 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHSS-S-GGGGSTT-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceecccccccccccCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 46799999999999999999999999999999999999999999877666788899999999999999999999999999
Q ss_pred Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhccC
Q psy2713 85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCS 142 (143)
Q Consensus 85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~~ 142 (143)
+. ++|.+.|+|++|.++++|+.+.+ .++++++.++|||+.|++++++++|+++++..
T Consensus 91 l~~~~G~VAI~DATN~T~~RR~~l~~-~~~~~~~~vlFIEsic~D~~ii~~NI~~~~~~ 148 (222)
T PF01591_consen 91 LQEEGGQVAIFDATNSTRERRKMLVE-RFKEHGIKVLFIESICDDPEIIERNIREKKQN 148 (222)
T ss_dssp HHTS--SEEEEES---SHHHHHHHHH-HHHHTT-EEEEEEEE---HHHHHHHHHHHHTT
T ss_pred HhcCCCeEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEEEEEEeCCHHHHHHHHHHHHcC
Confidence 95 88999999999999999999999 99999999999999999999999999999875
No 2
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=99.86 E-value=3.1e-20 Score=121.76 Aligned_cols=121 Identities=24% Similarity=0.337 Sum_probs=85.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
+|+|+|+|||||||+|+.|++.++ ..+++.|.++........... . ........ ....+...+.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~-----~~~i~~D~~~~~~~~~~~~~~----~--~~~~~~~~-~~~~~~~~~~~~l~ 68 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG-----AVVISQDEIRRRLAGEDPPSP----S--DYIEAEER-AYQILNAAIRKALR 68 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST-----EEEEEHHHHHHHHCCSSSGCC----C--CCHHHHHH-HHHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC-----CEEEeHHHHHHHHcccccccc----h--hHHHHHHH-HHHHHHHHHHHHHH
Confidence 689999999999999999998876 566788888776543110000 0 00111111 12233333332223
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
.|..+|+|.++...+.|+.|.+ +++.+++++.+|++.++.+++.+|+.+|...
T Consensus 69 ~g~~~vvd~~~~~~~~r~~~~~-~~~~~~~~~~~v~l~~~~~~~~~R~~~R~~~ 121 (143)
T PF13671_consen 69 NGNSVVVDNTNLSREERARLRE-LARKHGYPVRVVYLDAPEETLRERLAQRNRE 121 (143)
T ss_dssp TT-EEEEESS--SHHHHHHHHH-HHHHCTEEEEEEEECHHHHHHHHHHHTTHCC
T ss_pred cCCCceeccCcCCHHHHHHHHH-HHHHcCCeEEEEEEECCHHHHHHHHHhcCCc
Confidence 4778999999999999999999 9999999999999999999999999999765
No 3
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=99.83 E-value=4.9e-19 Score=117.13 Aligned_cols=119 Identities=21% Similarity=0.213 Sum_probs=86.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.+|+|+|+|||||||+|+.|.++|...+.++.++..|.++..... +.. |+.+ + |... ...+..+...
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~---dl~-fs~~--d----R~e~-~rr~~~~A~l 69 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNA---DLG-FSKE--D----REEN-IRRIAEVAKL 69 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTT---T---SSHH--H----HHHH-HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCC---CCC-CCHH--H----HHHH-HHHHHHHHHH
Confidence 46899999999999999999999999999999999999988766322 111 3221 1 1122 2335556667
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
+.+.|.++|+++....++.|+...+ .+.. ..++.|++.||.++|.+|+.+
T Consensus 70 l~~~G~ivIva~isp~~~~R~~~R~-~~~~--~~f~eVyv~~~~e~~~~RD~K 119 (156)
T PF01583_consen 70 LADQGIIVIVAFISPYREDREWARE-LIPN--ERFIEVYVDCPLEVCRKRDPK 119 (156)
T ss_dssp HHHTTSEEEEE----SHHHHHHHHH-HHHT--TEEEEEEEES-HHHHHHHTTT
T ss_pred HHhCCCeEEEeeccCchHHHHHHHH-hCCc--CceEEEEeCCCHHHHHHhCch
Confidence 7777999999999999999999998 7764 377888899999999999864
No 4
>PRK06762 hypothetical protein; Provisional
Probab=99.82 E-value=7.4e-19 Score=118.17 Aligned_cols=118 Identities=16% Similarity=0.177 Sum_probs=85.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+|.+|+|+|+|||||||+|+.|++.++ ....+++.|.++....... + ... .. . ...+.++...
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~---~~~~~i~~D~~r~~l~~~~---~--~~~-~~--~------~~~~~~~~~~ 63 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLG---RGTLLVSQDVVRRDMLRVK---D--GPG-NL--S------IDLIEQLVRY 63 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CCeEEecHHHHHHHhcccc---C--CCC-Cc--C------HHHHHHHHHH
Confidence 578999999999999999999999984 2345667788776543211 1 000 00 0 1112223333
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
....|..+|+|+++.....++.+.. +.+.++.++.+|++.+|.+++.+|+.+|..
T Consensus 64 ~~~~g~~vild~~~~~~~~~~~~~~-l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~ 118 (166)
T PRK06762 64 GLGHCEFVILEGILNSDRYGPMLKE-LIHLFRGNAYTYYFDLSFEETLRRHSTRPK 118 (166)
T ss_pred HHhCCCEEEEchhhccHhHHHHHHH-HHHhcCCCeEEEEEeCCHHHHHHHHhcccc
Confidence 3335788999999888888888888 888888888999999999999999999854
No 5
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.81 E-value=3.9e-19 Score=118.13 Aligned_cols=123 Identities=15% Similarity=0.141 Sum_probs=95.6
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
.++++.+|||+|+|||||||+|..|.+.|...|+.+.++..|+.|..... +.. |+.+ +.. .....+..+
T Consensus 19 ~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~---dLg-Fs~e--dR~-----eniRRvaev 87 (197)
T COG0529 19 KGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR---DLG-FSRE--DRI-----ENIRRVAEV 87 (197)
T ss_pred hCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC---CCC-CChH--HHH-----HHHHHHHHH
Confidence 35668899999999999999999999999999999999999998876432 222 3321 111 112335566
Q ss_pred HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
.+.+.++|.++|+......++.|++..+ ++.+. +++-|++.||.++|.+|+-+.
T Consensus 88 Akll~daG~iviva~ISP~r~~R~~aR~-~~~~~--~FiEVyV~~pl~vce~RDpKG 141 (197)
T COG0529 88 AKLLADAGLIVIVAFISPYREDRQMARE-LLGEG--EFIEVYVDTPLEVCERRDPKG 141 (197)
T ss_pred HHHHHHCCeEEEEEeeCccHHHHHHHHH-HhCcC--ceEEEEeCCCHHHHHhcCchH
Confidence 6777778999999999999999999888 77653 566677889999999998764
No 6
>COG4639 Predicted kinase [General function prediction only]
Probab=99.81 E-value=9.9e-19 Score=113.93 Aligned_cols=120 Identities=20% Similarity=0.234 Sum_probs=86.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.+++++|+|||||||+|+.. +.+..+++.|+++..... ...+........+ ........+.+.
T Consensus 1 ~~~LvvL~G~~~sGKsT~ak~n-------~~~~~~lsld~~r~~lg~-----~~~~e~sqk~~~~---~~~~l~~~l~qr 65 (168)
T COG4639 1 MRILVVLRGASGSGKSTFAKEN-------FLQNYVLSLDDLRLLLGV-----SASKENSQKNDEL---VWDILYKQLEQR 65 (168)
T ss_pred CceEEEEecCCCCchhHHHHHh-------CCCcceecHHHHHHHhhh-----chhhhhccccHHH---HHHHHHHHHHHH
Confidence 3679999999999999999876 566788999998876421 1011001110010 011112222233
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
+. .|...|+|+++..++.|..+.+ +++.|++...+|+++.|.+.|+.||..|-++
T Consensus 66 l~-~Gk~tiidAtn~rr~~r~~l~~-La~~y~~~~~~ivfdtp~~~c~aRNk~~~Rq 120 (168)
T COG4639 66 LR-RGKFTIIDATNLRREDRRKLID-LAKAYGYKIYAIVFDTPLELCLARNKLRERQ 120 (168)
T ss_pred HH-cCCeEEEEcccCCHHHHHHHHH-HHHHhCCeEEEEEEeCCHHHHHHHhhccchh
Confidence 33 5899999999999999999999 9999999999999999999999999766543
No 7
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=99.80 E-value=2.6e-18 Score=123.43 Aligned_cols=121 Identities=21% Similarity=0.250 Sum_probs=78.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
.+|+|+|+|||||||+|+.|++.+...+.+..+++.+..... ... |.. .......+. .+...++...
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~------~~~-y~~-~~~Ek~~R~-----~l~s~v~r~l 68 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGID------RND-YAD-SKKEKEARG-----SLKSAVERAL 68 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-T------TSS-S---GGGHHHHHH-----HHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccc------hhh-hhc-hhhhHHHHH-----HHHHHHHHhh
Confidence 389999999999999999999999888888888887665521 122 321 111112222 2222222222
Q ss_pred cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
+...+||+|+.|+.+.+|..++. +++.++..+.+|++.||.+.|++||.+|...
T Consensus 69 s~~~iVI~Dd~nYiKg~RYelyc-lAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~ 122 (270)
T PF08433_consen 69 SKDTIVILDDNNYIKGMRYELYC-LARAYGTTFCVIYCDCPLETCLQRNSKRPEP 122 (270)
T ss_dssp TT-SEEEE-S---SHHHHHHHHH-HHHHTT-EEEEEEEE--HHHHHHHHHHTT-S
T ss_pred ccCeEEEEeCCchHHHHHHHHHH-HHHHcCCCEEEEEECCCHHHHHHhhhccCCC
Confidence 33589999999999999999999 9999999999999999999999999998753
No 8
>KOG0234|consensus
Probab=99.80 E-value=1.7e-18 Score=129.04 Aligned_cols=135 Identities=43% Similarity=0.729 Sum_probs=123.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+|+|+|++|||.++.++.+++.|.++++..++...+++.........++|.+++.++..++..++..++.++..+
T Consensus 27 ~~~~ivmvglpA~gKt~is~kl~ryl~w~~~~tk~fn~g~yrr~~~~~~~s~~ff~p~n~~~~~lr~~~a~~~l~D~~~~ 106 (438)
T KOG0234|consen 27 SKLVIVMVGLPARGKTYISSKLTRYLNWLGVNTKVFNVGEYRREAVKKVDSEPFFLPDNAEASKLRKQLALLALNDLLHF 106 (438)
T ss_pred CceEEEEecCCccCcchhhhhHHHHHHhhccccccccHHHHHHHHhcccccccccccCChhhhhhhHHHHHHHhhhHHHH
Confidence 36799999999999999999999999999999999999999998776554568899999999999999999999999998
Q ss_pred H-hcCCeEEEEeCCchhHHHHHHHHHHHHh-hcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 L-KNDGEVAIIDGTTATMEKRKQIHDYFAR-KMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+ ...|.++|+|+++.+++.|..+.. .++ +.++.+.+|+..|++++++.+|++..+
T Consensus 107 l~~~~g~vai~Datnttr~rrk~i~~-~~~~~~~~kv~FiEs~c~D~~ii~~NI~~~~ 163 (438)
T KOG0234|consen 107 LIKENGQVAIFDATNTTRERRKRIID-FAEREAGFKVFFIESVCNDPNLINNNIREVK 163 (438)
T ss_pred hhccCCceEEecCCCCCHHHHHHHHH-HHhhcCCceEEEEEeecCCchhHHhhhhhhh
Confidence 8 577999999999999999999999 996 789999999999999999999999443
No 9
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=99.78 E-value=7.8e-18 Score=134.27 Aligned_cols=132 Identities=29% Similarity=0.527 Sum_probs=104.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+..+|+|+|+||+||||+|+.|+++++|.++++++++.+.+++..... ..+++++.+.. ......+..+..++..+
T Consensus 214 ~~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~~~--~~~~~~~~~~~--~~e~~~~~~~~~d~~~~ 289 (664)
T PTZ00322 214 GSLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLERR--GGAVSSPTGAA--EVEFRIAKAIAHDMTTF 289 (664)
T ss_pred cceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhccC--CCCcCCCCCHH--HHHHHHHHHHHHHHHHH
Confidence 356899999999999999999999999999999999999999886421 22323322221 22233445556667777
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC----EEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF----KVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
+.+.|.++|+|++|.+...|..+.+ .+++.+. .+++|++.|++++.+++|+.|.+.
T Consensus 290 v~~~GgvaI~DatN~t~~rR~~~~~-~~~~~~~~~~~~vifle~vc~~~~~i~~ni~r~~~ 349 (664)
T PTZ00322 290 ICKTDGVAVLDGTNTTHARRMALLR-AIRETGLIRMTRVVFVEVVNNNSETIRRNVLRAKE 349 (664)
T ss_pred HhcCCCEEEEeCCCCCHHHHHHHHH-HHHHcCCCccCcEEEEEEeCCCHHHHHHHHHHHHh
Confidence 7655779999999999999999998 8888764 799999999999999999988654
No 10
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=99.78 E-value=1.2e-17 Score=122.02 Aligned_cols=123 Identities=22% Similarity=0.286 Sum_probs=86.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH-HH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA-TK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 83 (143)
++.+|+++|+|||||||+|+.|++.+. ....++.|.++........ ...+.........+ .....+. .+
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~----~~~~l~~D~~r~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~ 70 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNP----KAVNVNRDDLRQSLFGHGE-WGEYKFTKEKEDLV-----TKAQEAAALA 70 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCC----CCEEEeccHHHHHhcCCCc-ccccccChHHHHHH-----HHHHHHHHHH
Confidence 468999999999999999999999973 2356677877766433110 11111111111111 1112222 22
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+. .|..+|+|+++..++.++.|.+ +++++++.+.++++.+|.+++.+|+.+|.
T Consensus 71 ~l~-~g~~vIid~~~~~~~~~~~~~~-la~~~~~~~~~v~l~~~~e~~~~R~~~R~ 124 (300)
T PHA02530 71 ALK-SGKSVIISDTNLNPERRRKWKE-LAKELGAEFEEKVFDVPVEELVKRNRKRG 124 (300)
T ss_pred HHH-cCCeEEEeCCCCCHHHHHHHHH-HHHHcCCeEEEEEeCCCHHHHHHHHHccC
Confidence 333 4678999999999999999999 99999999988999999999999999994
No 11
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=99.77 E-value=1e-17 Score=119.45 Aligned_cols=118 Identities=18% Similarity=0.260 Sum_probs=86.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
+|+|+|+|||||||+|+.|++++...+.+...++.|.++..... +..... ...+ .....++..+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~-------~~~~~e--~~~~-----~~~~~~i~~~l~ 66 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV-------WKEKYE--EFIR-----DSTLYLIKTALK 66 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH-------hhHHhH--HHHH-----HHHHHHHHHHHh
Confidence 58999999999999999999999877777788877766554210 111000 0111 111222222223
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+..||+|+++.....|..+.. +++.++.++.+|++.+|.+++.+||.+|..
T Consensus 67 ~~~~VI~D~~~~~~~~r~~l~~-~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~ 118 (249)
T TIGR03574 67 NKYSVIVDDTNYYNSMRRDLIN-IAKEYNKNYIIIYLKAPLDTLLRRNIERGE 118 (249)
T ss_pred CCCeEEEeccchHHHHHHHHHH-HHHhCCCCEEEEEecCCHHHHHHHHHhCCC
Confidence 4678999999999999999999 999889999999999999999999998853
No 12
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=99.76 E-value=1.6e-17 Score=128.38 Aligned_cols=104 Identities=16% Similarity=0.194 Sum_probs=83.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.+|.+|+|+|+|||||||+|+.+++..++ ..++.|.+.. . ..++..+.+
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~-----~~vn~D~lg~----------------------~----~~~~~~a~~ 415 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGY-----KHVNADTLGS----------------------T----QNCLTACER 415 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCC-----eEECcHHHHH----------------------H----HHHHHHHHH
Confidence 46789999999999999999999987543 3445554310 0 122333444
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.|. .|..||+|++|.+++.|..|.+ +++++|+++.++++.+|.+++.+||..|..
T Consensus 416 ~L~-~G~sVVIDaTn~~~~~R~~~i~-lAk~~gv~v~~i~~~~p~e~~~~Rn~~R~~ 470 (526)
T TIGR01663 416 ALD-QGKRCAIDNTNPDAASRAKFLQ-CARAAGIPCRCFLFNAPLAQAKHNIAFREL 470 (526)
T ss_pred HHh-CCCcEEEECCCCCHHHHHHHHH-HHHHcCCeEEEEEeCCCHHHHHHHHHhhcc
Confidence 444 4789999999999999999999 999999999999999999999999999865
No 13
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=99.75 E-value=2e-17 Score=112.64 Aligned_cols=120 Identities=20% Similarity=0.187 Sum_probs=84.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHH---HHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLS---AREAQEDATK 83 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~ 83 (143)
.+|+++|+|||||||+|+.|++.|....+++..+..| |...... .+.+.. .....++.. +..++..++
T Consensus 2 pLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~kd-y~~~i~~----DEslpi---~ke~yres~~ks~~rlldSal- 72 (261)
T COG4088 2 PLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLEKD-YLRGILW----DESLPI---LKEVYRESFLKSVERLLDSAL- 72 (261)
T ss_pred ceEEEecCCCCCchHHHHHHHHHHHHhhhhccccchh-hhhheec----ccccch---HHHHHHHHHHHHHHHHHHHHh-
Confidence 4899999999999999999999998877766666554 2222110 011111 001111111 112233222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
. ...||+|++|...+.|.++.. .+++......+|++.||.+.|++||..|..
T Consensus 73 --k--n~~VIvDdtNYyksmRrqL~c-eak~~~tt~ciIyl~~plDtc~rrN~erge 124 (261)
T COG4088 73 --K--NYLVIVDDTNYYKSMRRQLAC-EAKERKTTWCIIYLRTPLDTCLRRNRERGE 124 (261)
T ss_pred --c--ceEEEEecccHHHHHHHHHHH-HHHhcCCceEEEEEccCHHHHHHhhccCCC
Confidence 2 568999999999999999999 999999999999999999999999976643
No 14
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=99.75 E-value=4.7e-17 Score=107.77 Aligned_cols=116 Identities=21% Similarity=0.191 Sum_probs=83.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
+|+|+|+|||||||+|+.|++.+...+.+...++.|.++..... ... +....... .. ..+......+..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~---~~~-~~~~~~~~------~~-~~~~~~a~~l~~ 69 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNK---DLG-FSREDREE------NI-RRIAEVAKLLAD 69 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhh---ccC-CCcchHHH------HH-HHHHHHHHHHHh
Confidence 58999999999999999999998766766667777777764322 111 22211111 11 112223334444
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.|..+|+|+++.....|..+.+ +++ +.++.++++.||.+++.+|+.+
T Consensus 70 ~G~~VIid~~~~~~~~R~~~~~-l~~--~~~~~~i~l~~~~e~~~~R~~~ 116 (149)
T cd02027 70 AGLIVIAAFISPYREDREAARK-IIG--GGDFLEVFVDTPLEVCEQRDPK 116 (149)
T ss_pred CCCEEEEccCCCCHHHHHHHHH-hcC--CCCEEEEEEeCCHHHHHHhCch
Confidence 6889999999999999999988 876 6888899999999999999876
No 15
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=99.73 E-value=2.1e-16 Score=107.24 Aligned_cols=126 Identities=18% Similarity=0.149 Sum_probs=76.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC----CCCccccC-chhhhhHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN----SHDIFRVD-NTEGYNIRQLSAREAQED 80 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~ 80 (143)
..+|+|+|+|||||||+|+.|++.++...+ .++.|+++........ +.+ ++.+ ........+.. ......
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~~~~---~~~~D~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-y~~~~~ 76 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAEPWL---HFGVDSFIEALPLKCQDAEGGIE-FDGDGGVSPGPEFRLL-EGAWYE 76 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCCCcc---ccCccHHHHhcChhhcccccccc-cCccCCcccchHHHHH-HHHHHH
Confidence 358999999999999999999998754332 2355555544321100 011 1110 00000111111 122223
Q ss_pred HHHHHhcCCeEEEEeCCch-hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 81 ATKWLKNDGEVAIIDGTTA-TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~-~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+..+...|..||+|.++. ..+.|+.+.. + .+.++.+|++.||.+++.+|+.+|..
T Consensus 77 ~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~-~---~~~~~~~v~l~~~~~~l~~R~~~R~~ 133 (175)
T cd00227 77 AVAAMARAGANVIADDVFLGRAALQDCWRS-F---VGLDVLWVGVRCPGEVAEGRETARGD 133 (175)
T ss_pred HHHHHHhCCCcEEEeeeccCCHHHHHHHHH-h---cCCCEEEEEEECCHHHHHHHHHhcCC
Confidence 3333444688999999887 5666666655 4 25778899999999999999998863
No 16
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=99.72 E-value=1.3e-16 Score=105.52 Aligned_cols=118 Identities=14% Similarity=0.122 Sum_probs=76.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh--hcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE--LYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
+|+|+|+|||||||+|+.|++.++... ++.|.++..... ...+.+ +... +...+.. .....+...+
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~-----i~~D~~~~~~~~~~~~~~~~-~~~~--~~~~~~~----~~~~~~~~~l 68 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPF-----IDGDDLHPPANIAKMAAGIP-LNDE--DRWPWLQ----ALTDALLAKL 68 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEE-----EeCcccccHHHHHHHHcCCC-CCcc--chhhHHH----HHHHHHHHHH
Confidence 589999999999999999999876544 445554432110 001112 1111 1111111 1111122222
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
...+..+|+|+++...+.|+.+.+ ++ ++..+.+|++.||.+++.+|+..|..
T Consensus 69 ~~~~~~vVid~~~~~~~~r~~~~~-~~--~~~~~~~v~l~~~~~~~~~R~~~R~~ 120 (150)
T cd02021 69 ASAGEGVVVACSALKRIYRDILRG-GA--ANPRVRFVHLDGPREVLAERLAARKG 120 (150)
T ss_pred HhCCCCEEEEeccccHHHHHHHHh-cC--CCCCEEEEEEECCHHHHHHHHHhccc
Confidence 234678999999999999988888 77 57888899999999999999998854
No 17
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=99.70 E-value=7.5e-16 Score=103.94 Aligned_cols=127 Identities=18% Similarity=0.146 Sum_probs=78.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-CCCcccc--CchhhhhHHHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-SHDIFRV--DNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.+|+|+|+|.|||||+|+.|.+.+..+. -.++.|.+...+..... ....+.+ +..+....... ....+...+.
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~---~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~ia 77 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPW---LHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDGGPLFRR-LYAAMHAAIA 77 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-E---EEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE-HHHHH-HHHHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCe---EEEecChHHhhcCcccccCCccccccccCCchhHHHHH-HHHHHHHHHH
Confidence 5899999999999999999999986443 35688888775433211 1112221 11111111111 1234455555
Q ss_pred HHhcCCeEEEEeCCchhHHH-HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEK-RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~-r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+.+.|..||+|.....+.. .+.|.+ ++. ++++++|.+.||.+++.+|...|..
T Consensus 78 a~a~aG~~VIvD~v~~~~~~l~d~l~~-~L~--~~~vl~VgV~Cpleil~~RE~~RgD 132 (174)
T PF07931_consen 78 AMARAGNNVIVDDVFLGPRWLQDCLRR-LLA--GLPVLFVGVRCPLEILERRERARGD 132 (174)
T ss_dssp HHHHTT-EEEEEE--TTTHHHHHHHHH-HHT--TS-EEEEEEE--HHHHHHHHHHHTS
T ss_pred HHHhCCCCEEEecCccCcHHHHHHHHH-HhC--CCceEEEEEECCHHHHHHHHHhcCC
Confidence 55667999999988777653 566656 664 7999999999999999999999875
No 18
>COG0645 Predicted kinase [General function prediction only]
Probab=99.70 E-value=1.3e-16 Score=105.66 Aligned_cols=121 Identities=18% Similarity=0.265 Sum_probs=89.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----hcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----LYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.++++.|+|||||||+|+.|++.++...+ ..|.++...++ .......|++...+..+ ..+....
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~l-----rsD~irk~L~g~p~~~r~~~g~ys~~~~~~vy-------~~l~~~A 69 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRL-----RSDVIRKRLFGVPEETRGPAGLYSPAATAAVY-------DELLGRA 69 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEE-----ehHHHHHHhcCCcccccCCCCCCcHHHHHHHH-------HHHHHHH
Confidence 68999999999999999999999887655 55555665543 01122333332222221 2233333
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
..+-..|..||+|+++..+..|+.+.. +++..+.++.+|++.+|.+.+..|-..|+-
T Consensus 70 ~l~l~~G~~VVlDa~~~r~~~R~~~~~-~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 70 ELLLSSGHSVVLDATFDRPQERALARA-LARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred HHHHhCCCcEEEecccCCHHHHHHHHH-HHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 334345889999999999999999999 999999999999999999999999988864
No 19
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=99.69 E-value=4.8e-16 Score=114.62 Aligned_cols=127 Identities=20% Similarity=0.136 Sum_probs=86.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhh-cCCCCccccCchhhhhHHHHHHHH---------
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLEL-YNSHDIFRVDNTEGYNIRQLSARE--------- 76 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------- 76 (143)
+++|+|+|||||||+++.|+..+. ..|+++.+++.|++....... ..+. ...+.+...+....+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~~-----~~~~~~k~~R~~i~~~le~~v~a~ 75 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQSR-----EIPSQWKQFRQELLKYLEHFLVAV 75 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcCC-----CcHHHHHHHHHHHHHHHHHHHHHh
Confidence 478999999999999999999986 578889999998876321110 0000 000000000000000
Q ss_pred ---------------------------------------HHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC
Q psy2713 77 ---------------------------------------AQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF 117 (143)
Q Consensus 77 ---------------------------------------~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~ 117 (143)
....+.....+.+..+|+|++|..+..|..+.. +++.++.
T Consensus 76 ~~g~~~~~~~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~-LAr~~~~ 154 (340)
T TIGR03575 76 INGSELSAPPGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQ-LARKYSL 154 (340)
T ss_pred cCcccccCCcccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHH-HHHHhCC
Confidence 001111111133457999999999999999999 9999999
Q ss_pred EEEEEEeecCcHHHHHHhhhhhc
Q psy2713 118 KVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 118 ~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+.+|++.||.+++++||.+|..
T Consensus 155 ~~~~V~ld~ple~~l~RN~~R~~ 177 (340)
T TIGR03575 155 GFCQLFLDCPVESCLLRNKQRPV 177 (340)
T ss_pred CEEEEEEeCCHHHHHHHHhcCCC
Confidence 99999999999999999999853
No 20
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=99.69 E-value=6.7e-16 Score=105.48 Aligned_cols=119 Identities=16% Similarity=0.179 Sum_probs=84.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+++.+|+|+|+|||||||+|+.|...+...+.....++.|.++..... +.. |... +... .. ..+..+..
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~---~~~-~~~~--~~~~----~~-~~~~~~~~ 84 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNK---DLG-FSEE--DRKE----NI-RRIGEVAK 84 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhcc---ccC-CCHH--HHHH----HH-HHHHHHHH
Confidence 467899999999999999999999998766666667777777654322 111 2221 1111 11 11233334
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.+...|.+||+|+++.....|+.+.. ++... ++.++++.||.+++.+|+.
T Consensus 85 ~~~~~G~~VI~d~~~~~~~~r~~~~~-~~~~~--~~~~v~l~~~~e~~~~R~~ 134 (184)
T TIGR00455 85 LFVRNGIIVITSFISPYRADRQMVRE-LIEKG--EFIEVFVDCPLEVCEQRDP 134 (184)
T ss_pred HHHcCCCEEEEecCCCCHHHHHHHHH-hCcCC--CeEEEEEeCCHHHHHHhCc
Confidence 44456899999999999999998888 77653 6677889999999999964
No 21
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=99.69 E-value=7.7e-16 Score=106.46 Aligned_cols=132 Identities=21% Similarity=0.298 Sum_probs=82.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
...|.++++.|.|||||||++..+...+. .-+...++.|.++....... +.......+........+....+.+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~--~~~~v~i~~D~~r~~~p~~~---~~~~~~~~~~~~~~~~~a~~~~~~~~ 86 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFG--GGGIVVIDADEFRQFHPDYD---ELLKADPDEASELTQKEASRLAEKLI 86 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT---TT-SEEE-GGGGGGGSTTHH---HHHHHHCCCTHHHHHHHHHHHHHHHH
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhcc--CCCeEEEehHHHHHhccchh---hhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 45789999999999999999999998875 44567788888876531100 00000011111122222334455566
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.+...+..+|+|+++..++....+.+ .+++.||.+.++.+.++.+..+.|..+|-.
T Consensus 87 ~~a~~~~~nii~E~tl~~~~~~~~~~~-~~k~~GY~v~l~~v~~~~e~s~~rv~~R~~ 143 (199)
T PF06414_consen 87 EYAIENRYNIIFEGTLSNPSKLRKLIR-EAKAAGYKVELYYVAVPPELSIERVRQRYE 143 (199)
T ss_dssp HHHHHCT--EEEE--TTSSHHHHHHHH-HHHCTT-EEEEEEE---HHHHHHHHHHHHH
T ss_pred HHHHHcCCCEEEecCCCChhHHHHHHH-HHHcCCceEEEEEEECCHHHHHHHHHHHHH
Confidence 666556889999999998888887888 999999999999999999999999988854
No 22
>PRK14527 adenylate kinase; Provisional
Probab=99.65 E-value=1.4e-15 Score=104.54 Aligned_cols=127 Identities=20% Similarity=0.266 Sum_probs=81.0
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHH
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAR 75 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 75 (143)
|...++.+|++.|+|||||||+|+.|+++++..++++ +++.+........ .+++.. +......+
T Consensus 1 ~~~~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~-----gd~~r~~~~~~~~~~~~~~~~~~~----g~~~p~~~-- 69 (191)
T PRK14527 1 MTQTKNKVVIFLGPPGAGKGTQAERLAQELGLKKLST-----GDILRDHVARGTELGQRAKPIMEA----GDLVPDEL-- 69 (191)
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCc-----cHHHHHHHhcCcHHHHHHHHHHHc----CCCCcHHH--
Confidence 3456788999999999999999999999998877754 3333222111000 000000 00001111
Q ss_pred HHHHHHHHHHh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713 76 EAQEDATKWLK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 76 ~~~~~~~~~l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~ 140 (143)
....+.+.+. ..+..+|+|+++.+..+++.+.. +++..+.++ .++++.||.+++.+|-.+|..
T Consensus 70 -~~~l~~~~l~~~~~~~~VlDGfpr~~~q~~~~~~-~~~~~g~~~~~vi~l~~~~~~~~~Rl~~R~~ 134 (191)
T PRK14527 70 -ILALIRDELAGMEPVRVIFDGFPRTLAQAEALDR-LLEELGARLLAVVLLEVPDEELIRRIVERAR 134 (191)
T ss_pred -HHHHHHHHHhcCCCCcEEEcCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHcCcc
Confidence 1111222332 12346999999888888888888 888777666 468889999999999998864
No 23
>KOG3354|consensus
Probab=99.63 E-value=1.1e-14 Score=95.04 Aligned_cols=122 Identities=16% Similarity=0.159 Sum_probs=89.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
+.+|++.|++||||||+++.|.+.|++.+++.|-+....-++.+-. +++.-+ ++.+-|...+ -..+...+
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~---GipLnD---~DR~pWL~~i----~~~~~~~l 81 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQ---GIPLND---DDRWPWLKKI----AVELRKAL 81 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhc---CCCCCc---ccccHHHHHH----HHHHHHHh
Confidence 4699999999999999999999999999999988877655555432 445322 2333333332 23333333
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhh------cCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARK------MGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~------~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
. .+..+|+.|+...+.+|+-+.. -++. .+..+.||.+..+.+++.+|-..|.
T Consensus 82 ~-~~q~vVlACSaLKk~YRdILr~-sl~~gk~~~~~~~~l~fi~l~~s~evi~~Rl~~R~ 139 (191)
T KOG3354|consen 82 A-SGQGVVLACSALKKKYRDILRH-SLKDGKPGKCPESQLHFILLSASFEVILKRLKKRK 139 (191)
T ss_pred h-cCCeEEEEhHHHHHHHHHHHHh-hcccCCccCCccceEEEeeeeccHHHHHHHHhhcc
Confidence 3 4778999999999999988877 5542 2467888888899999999998886
No 24
>PRK00889 adenylylsulfate kinase; Provisional
Probab=99.63 E-value=1.4e-14 Score=98.21 Aligned_cols=116 Identities=18% Similarity=0.175 Sum_probs=77.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
++..+|+|+|+|||||||+|+.|+..+...+.+..+++.|.++..... +.. +..+..+.. . .. +..+..
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~~---~~~-~~~~~r~~~--~----~~-~~~~a~ 70 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLSK---GLG-FSKEDRDTN--I----RR-IGFVAN 70 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHhc---CCC-CChhhHHHH--H----HH-HHHHHH
Confidence 566799999999999999999999998776766777777776654321 111 222111111 1 11 122223
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
.+...|.++++|+++...+.++.+.. .. ..+.+|++.||.+++.+|+
T Consensus 71 ~~~~~g~~vi~~~~~~~~~~~~~l~~-~~----~~~~~v~l~~~~e~~~~R~ 117 (175)
T PRK00889 71 LLTRHGVIVLVSAISPYRETREEVRA-NI----GNFLEVFVDAPLEVCEQRD 117 (175)
T ss_pred HHHhCCCEEEEecCCCCHHHHHHHHh-hc----CCeEEEEEcCCHHHHHHhC
Confidence 33345778999998777677766665 43 3466788899999999997
No 25
>PRK14532 adenylate kinase; Provisional
Probab=99.62 E-value=2.4e-15 Score=102.97 Aligned_cols=121 Identities=21% Similarity=0.238 Sum_probs=77.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.|+|.|+|||||||+|+.|++.++..++ +.|++.+....... ...+++. +..+........+....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i-----s~~d~lr~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~~~~~~~ 72 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL-----STGDMLRAAIASGSELGQRVKGIMDR----GELVSDEIVIALIEERL 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE-----eCcHHHHHHHHcCCHHHHHHHHHHHC----CCccCHHHHHHHHHHHH
Confidence 4899999999999999999999886655 45444343221000 0011110 00011111122222222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~ 139 (143)
.. ...+..+|+|+++.+..+++.+.+ +++..+... .++++.+|++++.+|...|.
T Consensus 73 ~~-~~~~~g~vldg~pr~~~q~~~~~~-~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 73 PE-AEAAGGAIFDGFPRTVAQAEALDK-MLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred hC-cCccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 11 123567999999999999999988 887777654 67889999999999988774
No 26
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.62 E-value=1.1e-15 Score=104.06 Aligned_cols=122 Identities=14% Similarity=0.154 Sum_probs=73.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+|+++|+|||||||+|+.|+++++..++ +.+++.+..... +.+. ....-..+...........+. +.
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~i-----s~~d~lr~~~~~--~~~~~~~~~~~~~~g~~~~~~~~~~ll~---~~ 70 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHL-----SAGDLLRAEIKS--GSENGELIESMIKNGKIVPSEVTVKLLK---NA 70 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECChHHHHHHhc--CChHHHHHHHHHHCCCcCCHHHHHHHHH---HH
Confidence 5899999999999999999999876554 544333322111 0000 000000000111111112222 22
Q ss_pred Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+. ..+..+|+|+++.+.++++.|.+ ++.....+-.++++.||.+++++|..+|..
T Consensus 71 ~~~~~~~~~vlDg~p~~~~q~~~~~~-~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 71 IQADGSKKFLIDGFPRNEENLEAWEK-LMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred HhccCCCcEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 21 22567999999999999998888 765332233478889999999999888754
No 27
>PRK14531 adenylate kinase; Provisional
Probab=99.61 E-value=2.9e-15 Score=102.34 Aligned_cols=124 Identities=15% Similarity=0.154 Sum_probs=75.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
+..|+++|+|||||||+|+.|++.++..++++ ++..+...... .+. ....-..+..+...+....+.
T Consensus 2 ~~~i~i~G~pGsGKsT~~~~la~~~g~~~is~-----gd~lr~~~~~~--~~~~~~~~~~~~~G~~v~d~l~~~~~~--- 71 (183)
T PRK14531 2 KQRLLFLGPPGAGKGTQAARLCAAHGLRHLST-----GDLLRSEVAAG--SALGQEAEAVMNRGELVSDALVLAIVE--- 71 (183)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCeEec-----ccHHHHHHhcC--CHHHHHHHHHHHcCCCCCHHHHHHHHH---
Confidence 45699999999999999999999998766544 33322211100 000 000000000111111111111
Q ss_pred HHHh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.+. ..+..+|+|+++.+..+.+.|.+ .+...+.++ .++++.||.+++.+|...|..
T Consensus 72 ~~l~~~~~~g~ilDGfpr~~~q~~~~~~-~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r 130 (183)
T PRK14531 72 SQLKALNSGGWLLDGFPRTVAQAEALEP-LLEELKQPIEAVVLLELDDAVLIERLLARGR 130 (183)
T ss_pred HHHhhccCCcEEEeCCCCCHHHHHHHHH-HHHHcCCCCCeEEEEECCHHHHHHHhhcCCC
Confidence 2221 12456899999999999998888 888776554 478889999999999887743
No 28
>PRK03846 adenylylsulfate kinase; Provisional
Probab=99.61 E-value=2.1e-14 Score=99.18 Aligned_cols=119 Identities=13% Similarity=0.099 Sum_probs=81.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
++++.+|+|+|+|||||||+++.|+..+...+.....+..|.++..... ... +....... . ...+..+.
T Consensus 21 ~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~~---~~~-~~~~~~~~------~-~~~l~~~a 89 (198)
T PRK03846 21 GHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLCS---DLG-FSDADRKE------N-IRRVGEVA 89 (198)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhhh---cCC-cCcccHHH------H-HHHHHHHH
Confidence 4678999999999999999999999988666666667766766644221 111 22211111 1 11122233
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
..+...|.++|.++.+..++.|+.+.+ +++.. .+++|++.||.+++.+|+
T Consensus 90 ~~~~~~G~~VI~~~~~~~~~~R~~~r~-~l~~~--~~i~V~L~~~~e~~~~R~ 139 (198)
T PRK03846 90 KLMVDAGLVVLTAFISPHRAERQMVRE-RLGEG--EFIEVFVDTPLAICEARD 139 (198)
T ss_pred HHHhhCCCEEEEEeCCCCHHHHHHHHH-HcccC--CEEEEEEcCCHHHHHhcC
Confidence 344445778888888888899999999 88764 455688899999999994
No 29
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.61 E-value=1e-14 Score=97.70 Aligned_cols=113 Identities=16% Similarity=0.189 Sum_probs=68.4
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hh-hcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LE-LYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
|+++|+|||||||+|+.|++.++... ++.|++.... .. ...+.. +.. ..... +.......+...+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~-----v~~D~~~~~~~~~~~~~~~~-~~~--~~~~~----~~~~~~~~~~~~l~ 68 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKF-----IEGDDLHPAANIEKMSAGIP-LND--DDRWP----WLQNLNDASTAAAA 68 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeE-----EeCccccChHHHHHHHcCCC-CCh--hhHHH----HHHHHHHHHHHHHh
Confidence 57899999999999999999986444 4445442110 00 000111 111 11111 11222333333444
Q ss_pred cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
. +..+|+|+++..+..|+.+. .++.++.++++.+|.+++.+|..+|.
T Consensus 69 ~-~~~~Vi~~t~~~~~~r~~~~-----~~~~~~~~i~l~~~~e~~~~R~~~R~ 115 (163)
T TIGR01313 69 K-NKVGIITCSALKRHYRDILR-----EAEPNLHFIYLSGDKDVILERMKARK 115 (163)
T ss_pred c-CCCEEEEecccHHHHHHHHH-----hcCCCEEEEEEeCCHHHHHHHHHhcc
Confidence 4 34568888887666655443 45777888899999999999999885
No 30
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.61 E-value=3.3e-14 Score=96.44 Aligned_cols=117 Identities=17% Similarity=0.131 Sum_probs=75.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.++.+|+|+|+|||||||+|+.|++.+...+.....+..|.++... .. ..+...... .. ......+.+
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~-~~----~~~~~~~~~------~~-~~~~~~l~~ 72 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL-GH----YGYDKQSRI------EM-ALKRAKLAK 72 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc-CC----CCCCHHHHH------HH-HHHHHHHHH
Confidence 4578999999999999999999999997666666677777765532 11 112111110 00 111223333
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.+...|..||+|+.+...+.++.... ... +.+++++.||.+++.+|..+
T Consensus 73 ~l~~~g~~VI~~~~~~~~~~~~~~~~-~~~----~~~~v~l~~~~e~~~~R~~~ 121 (176)
T PRK05541 73 FLADQGMIVIVTTISMFDEIYAYNRK-HLP----NYFEVYLKCDMEELIRRDQK 121 (176)
T ss_pred HHHhCCCEEEEEeCCcHHHHHHHHHh-hcC----CeEEEEEeCCHHHHHHhchh
Confidence 34345789999998876555555444 332 24578889999999999764
No 31
>PRK14529 adenylate kinase; Provisional
Probab=99.58 E-value=1.2e-14 Score=101.76 Aligned_cols=124 Identities=14% Similarity=0.200 Sum_probs=78.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
-|+|.|+|||||||+|+.|++.++..++++..+ .+..... +.+. +......+..+...+.... +.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdl-----lr~~i~~--~t~lg~~i~~~i~~G~lvpdei~~~l---v~~~ 71 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAI-----FREHIGG--GTELGKKAKEYIDRGDLVPDDITIPM---ILET 71 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchh-----hhhhccC--CChHHHHHHHHHhccCcchHHHHHHH---HHHH
Confidence 388899999999999999999998877754333 2221110 0000 0000011111222222222 2233
Q ss_pred Hh-cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhccC
Q psy2713 85 LK-NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMCS 142 (143)
Q Consensus 85 l~-~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~~ 142 (143)
+. .....+|+|+++.+..+.+.|.+ ++...+..+ .+|++.||++++.+|-..|+.+.
T Consensus 72 l~~~~~~g~iLDGfPRt~~Qa~~l~~-~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~~c~ 130 (223)
T PRK14529 72 LKQDGKNGWLLDGFPRNKVQAEKLWE-ALQKEGMKLDYVIEILLPREVAKNRIMGRRLCK 130 (223)
T ss_pred HhccCCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHhhCCcccc
Confidence 31 12466999999999999999888 776655444 57888999999999999997654
No 32
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.58 E-value=3.9e-14 Score=112.76 Aligned_cols=119 Identities=14% Similarity=0.153 Sum_probs=85.7
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.+++.+|+++|+|||||||+|+.|++++...+.....++.|.++..... +.. |..+ +. ..+... +..+.
T Consensus 457 ~~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~---~~~-~~~~--~r----~~~~~~-l~~~a 525 (632)
T PRK05506 457 GQKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNR---DLG-FSDA--DR----VENIRR-VAEVA 525 (632)
T ss_pred CCCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCC---CCC-CCHH--HH----HHHHHH-HHHHH
Confidence 4568999999999999999999999999776777788888888765431 111 2221 11 111122 22233
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
..+...|..+|+|+++..+..|+.+.+ ++... .+.++++.+|.+++.+|+
T Consensus 526 ~~~~~~G~~Vivda~~~~~~~R~~~r~-l~~~~--~~~~v~L~~~~e~~~~R~ 575 (632)
T PRK05506 526 RLMADAGLIVLVSFISPFREERELARA-LHGEG--EFVEVFVDTPLEVCEARD 575 (632)
T ss_pred HHHHhCCCEEEEECCCCCHHHHHHHHH-hcccC--CeEEEEECCCHHHHHhhC
Confidence 333455889999999999999998888 77653 567788999999999997
No 33
>PLN02674 adenylate kinase
Probab=99.58 E-value=2e-14 Score=101.77 Aligned_cols=129 Identities=15% Similarity=0.150 Sum_probs=80.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-cccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-FRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+..|++.|+|||||||+|+.|++.++..++ +.++..+........... .......+..+...+....+.+.+..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi-----s~GdllR~~i~~~s~~g~~i~~~~~~G~lvpd~iv~~lv~~~l~~ 105 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL-----ATGDMLRAAVAAKTPLGIKAKEAMDKGELVSDDLVVGIIDEAMKK 105 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE-----chhHHHHHHHhccChhhHHHHHHHHcCCccCHHHHHHHHHHHHhC
Confidence 467899999999999999999999987665 555544443221100000 00000111112222222222221111
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhcc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
......+|+|+++.+..+.+.+.+ ++...+..+ .+|++.+|++++.+|...|..+
T Consensus 106 -~~~~~g~ilDGfPRt~~Qa~~l~~-~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~~~ 161 (244)
T PLN02674 106 -PSCQKGFILDGFPRTVVQAQKLDE-MLAKQGAKIDKVLNFAIDDAILEERITGRWIH 161 (244)
T ss_pred -cCcCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhccccc
Confidence 122457999999999999998888 776666444 5788899999999999988644
No 34
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=99.57 E-value=6.3e-14 Score=109.98 Aligned_cols=119 Identities=15% Similarity=0.154 Sum_probs=82.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.+.+|+|+|+|||||||+|+.|++.++. .+.+...+..|.++..+. +...|+....+ ... .. +.....
T Consensus 391 ~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~----ge~~f~~~er~--~~~----~~-l~~~a~ 459 (568)
T PRK05537 391 QGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS----SELGFSKEDRD--LNI----LR-IGFVAS 459 (568)
T ss_pred CCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc----CCCCCCHHHHH--HHH----HH-HHHHHH
Confidence 4679999999999999999999999986 555566777776655432 12234322111 111 11 211222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.+...|.++|+|+++...+.|+.+.+ ++++++ .+++|++.+|.+++.+|..
T Consensus 460 ~v~~~Gg~vI~~~~~p~~~~R~~nr~-llk~~g-~fivV~L~~p~e~l~~R~r 510 (568)
T PRK05537 460 EITKNGGIAICAPIAPYRATRREVRE-MIEAYG-GFIEVHVATPLEVCEQRDR 510 (568)
T ss_pred HHHhCCCEEEEEeCCchHHHHHHHHH-HHhhcC-CEEEEEEcCCHHHHHHhcc
Confidence 23234779999999999999999999 988765 4567888999999999963
No 35
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.53 E-value=4.5e-14 Score=98.73 Aligned_cols=120 Identities=16% Similarity=0.223 Sum_probs=74.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.|++.|+|||||||+|+.|++.++..++++ ++..+........ .++++.. ..+...+. ...+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~-----~dl~r~~~~~~~~~~~~~~~~~~~g----~~~p~~~~---~~~i~ 69 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIST-----GDMLRAAVKAGTELGKEAKSYMDAG----ELVPDEIV---IGLVK 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEC-----CccHHHHHhccchHHHHHHHHHHcC----CcCCHHHH---HHHHH
Confidence 489999999999999999999998766644 3332221111000 0000000 00011111 11111
Q ss_pred HHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.+. .....+|+|+++.+..+.+.+.+ .+...+..+ .+|++.||++++.+|-..|..
T Consensus 70 ~~l~~~~~~~g~VlDGfPr~~~qa~~l~~-~l~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (215)
T PRK00279 70 ERLAQPDCKNGFLLDGFPRTIPQAEALDE-MLKELGIKLDAVIEIDVPDEELVERLSGRRI 129 (215)
T ss_pred HHHhccCccCCEEEecCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHhCCcc
Confidence 2221 12347999999999888888877 777666554 678899999999999998864
No 36
>PLN02200 adenylate kinase family protein
Probab=99.52 E-value=4.3e-14 Score=99.98 Aligned_cols=123 Identities=16% Similarity=0.213 Sum_probs=72.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 81 (143)
.|.+|+++|+|||||||+|+.|++.++..++ +.+++.+...... .+... .....+...........+...
T Consensus 42 ~~~ii~I~G~PGSGKsT~a~~La~~~g~~hi-----s~gdllR~~i~~~--s~~~~~i~~~~~~G~~vp~e~~~~~l~~~ 114 (234)
T PLN02200 42 TPFITFVLGGPGSGKGTQCEKIVETFGFKHL-----SAGDLLRREIASN--SEHGAMILNTIKEGKIVPSEVTVKLIQKE 114 (234)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCeEE-----EccHHHHHHHhcc--ChhHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 4689999999999999999999999876544 5544433322110 00000 000000000111111112211
Q ss_pred HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+. ...+..+|+|+.+.+.+++..+.+ .+.. .+-.++.+.||++++.+|...|.
T Consensus 115 l~--~~~~~~~ILDG~Prt~~q~~~l~~-~~~~--~pd~vi~Ld~~~e~~~~Rl~~R~ 167 (234)
T PLN02200 115 ME--SSDNNKFLIDGFPRTEENRIAFER-IIGA--EPNVVLFFDCPEEEMVKRVLNRN 167 (234)
T ss_pred Hh--cCCCCeEEecCCcccHHHHHHHHH-Hhcc--CCCEEEEEECCHHHHHHHHHcCc
Confidence 11 112456999999998888877776 5532 23356788999999999988774
No 37
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=99.51 E-value=2.6e-13 Score=88.02 Aligned_cols=112 Identities=14% Similarity=0.092 Sum_probs=77.9
Q ss_pred EccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeE
Q psy2713 12 VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEV 91 (143)
Q Consensus 12 ~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (143)
.|.+||||||++..|++++++.+++.|-+....-...+.. +.++-+. +.+-|. ...-+.+.... ..+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~---GiPL~Dd---DR~pWL----~~l~~~~~~~~-~~~~~ 69 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSA---GIPLNDD---DRWPWL----EALGDAAASLA-QKNKH 69 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhC---CCCCCcc---hhhHHH----HHHHHHHHHhh-cCCCc
Confidence 4899999999999999999999998888866544444322 4553322 222222 22222222322 23557
Q ss_pred EEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 92 AIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 92 vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+|+-|+.+.+++|+.+.. - .-.+.||++.-+.+.+++|..+|+
T Consensus 70 ~vi~CSALKr~YRD~LR~-~----~~~~~Fv~L~g~~~~i~~Rm~~R~ 112 (161)
T COG3265 70 VVIACSALKRSYRDLLRE-A----NPGLRFVYLDGDFDLILERMKARK 112 (161)
T ss_pred eEEecHHHHHHHHHHHhc-c----CCCeEEEEecCCHHHHHHHHHhcc
Confidence 999999999998888876 2 224778888899999999998885
No 38
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=99.51 E-value=1.1e-13 Score=96.48 Aligned_cols=123 Identities=16% Similarity=0.190 Sum_probs=71.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
|++.|+|||||||+|+.|++.++..++ +.+++.+.......... ........+..+...+....+.+.+.....
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~i-----s~gdllr~~~~~~~~~~~~~~~~~~~g~~vp~~~~~~l~~~~i~~~~~ 76 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHI-----STGDLLRAEIKAGTPLGKKAKEYMEKGELVPDEIVNQLVKERLTQNQD 76 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCee-----ehhHHHHHhhccccHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCcc
Confidence 789999999999999999999876655 55444333221100000 000000000011111111112211111111
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+..+|+|+++.+..+.+.+.+ .+.. ....+|++.||++.+.+|-..|.
T Consensus 77 ~~~~~ilDGfPrt~~Qa~~l~~-~~~~--~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 77 NENGFILDGFPRTLSQAEALDA-LLKE--KIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred cCCcEEEeCCCCCHHHHHHHHH-Hhcc--CCCEEEEEECCHHHHHHHHHCCC
Confidence 2467999999998888877776 5431 23467888999999999999886
No 39
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=99.50 E-value=6.5e-14 Score=96.09 Aligned_cols=119 Identities=18% Similarity=0.235 Sum_probs=72.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
|+++|+|||||||+|+.|++.++..+ ++.|++.+....... + .+++.. +......+....+ ..
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~-----i~~~~l~~~~~~~~~~~~~~~~~~~~~----g~~~~~~~~~~l~---~~ 69 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPH-----ISTGDLLREEIASGTELGKKAKEYIDS----GKLVPDEIVIKLL---KE 69 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE-----EECcHHHHHHHhcCChHHHHHHHHHHc----CCccCHHHHHHHH---HH
Confidence 79999999999999999999987544 455544333211100 0 000000 0000011111111 12
Q ss_pred HHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+.. .+..+|+|+.+.+..+.+.+.+ .....+.+..+|++.||.+++.+|..+|..
T Consensus 70 ~l~~~~~~~~~vldg~Pr~~~q~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 70 RLKKPDCKKGFILDGFPRTVDQAEALDE-LLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred HHhcccccCCEEEeCCCCCHHHHHHHHH-HHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 2221 2456899999888888888877 665444666788899999999999998864
No 40
>KOG0635|consensus
Probab=99.50 E-value=2e-13 Score=89.01 Aligned_cols=121 Identities=17% Similarity=0.171 Sum_probs=88.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.++.++|+++|++||||||+|-.|.+.|...+.-+-.+..|++|..... +.. |..+ +...- .+.+.++.
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~---DL~-F~a~-dR~EN------IRRigeVa 96 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK---DLG-FKAE-DRNEN------IRRIGEVA 96 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc---ccC-cchh-hhhhh------HHHHHHHH
Confidence 4567899999999999999999999999988988888888888765322 111 3321 11111 23366677
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
+.+.+.|.+.|......++..|+.-.+ +..+. +++-|.+.||.+.|..|+=+
T Consensus 97 KLFADag~iciaSlISPYR~dRdacRe-l~~~~--~FiEvfmdvpl~vcE~RDPK 148 (207)
T KOG0635|consen 97 KLFADAGVICIASLISPYRKDRDACRE-LLPEG--DFIEVFMDVPLEVCEARDPK 148 (207)
T ss_pred HHHhccceeeeehhcCchhccHHHHHH-hccCC--CeEEEEecCcHHHhhccCch
Confidence 777777877777777788888888888 77653 56666778999999888643
No 41
>KOG3079|consensus
Probab=99.50 E-value=2.2e-13 Score=91.27 Aligned_cols=130 Identities=13% Similarity=0.112 Sum_probs=83.2
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQ 78 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 78 (143)
+..++.+|++.|.|||||.|++..+++.+++.++ +.++..+...... +.++-. .....+..+...+....+
T Consensus 4 ~~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHl-----SaGdLLR~E~~~~-gse~g~~I~~~i~~G~iVP~ei~~~LL 77 (195)
T KOG3079|consen 4 KLDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHL-----SAGDLLRAEIASA-GSERGALIKEIIKNGDLVPVEITLSLL 77 (195)
T ss_pred cccCCCEEEEEcCCCCCcchHHHHHHHHcCceee-----cHHHHHHHHHccc-cChHHHHHHHHHHcCCcCcHHHHHHHH
Confidence 4567889999999999999999999999998776 6666655532210 111100 000011111222223333
Q ss_pred HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 79 EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 79 ~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
..++....+ ...+++|+.+....+...|.+ .... -+-+++.+.|+.++|++|-++|.+-
T Consensus 78 ~~am~~~~~-~~~fLIDGyPR~~~q~~~fe~-~i~~--~~~fvl~fdc~ee~~l~Rll~R~q~ 136 (195)
T KOG3079|consen 78 EEAMRSSGD-SNGFLIDGYPRNVDQLVEFER-KIQG--DPDFVLFFDCPEETMLKRLLHRGQS 136 (195)
T ss_pred HHHHHhcCC-CCeEEecCCCCChHHHHHHHH-HhcC--CCCEEEEEeCCHHHHHHHHHhhccc
Confidence 333333211 123999999999999998888 5542 2334677789999999999999765
No 42
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=99.49 E-value=1.5e-13 Score=93.35 Aligned_cols=123 Identities=18% Similarity=0.259 Sum_probs=75.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
-|++.|+|||||||+|+.|++.++..+++++.+ .+...... .+... ........+...+...++...+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~-----~r~~~~~~--t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~ 74 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDI-----LRAAIAER--TELGEEIKKYIDKGELVPDEIVNGLVKERLDE 74 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHH-----hHhhhccC--ChHHHHHHHHHHcCCccchHHHHHHHHHHHHh
Confidence 588999999999999999999988887754433 22221100 00000 000000011222222333332222
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~ 139 (143)
..... .+|+|+.+.+..+-+.+.+ ++.++|.+. ..+++.++++.++.|-..|.
T Consensus 75 ~d~~~-~~I~dg~PR~~~qa~~l~r-~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~ 128 (178)
T COG0563 75 ADCKA-GFILDGFPRTLCQARALKR-LLKELGVRLDMVIELDVPEELLLERLLGRR 128 (178)
T ss_pred hcccC-eEEEeCCCCcHHHHHHHHH-HHHHcCCCcceEEeeeCCHHHHHHHHhCcc
Confidence 22122 7999999999988888888 888877444 57788899988888887763
No 43
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.49 E-value=2.1e-12 Score=89.08 Aligned_cols=124 Identities=14% Similarity=0.104 Sum_probs=69.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC------------ccccCchhhhhHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD------------IFRVDNTEGYNIRQ 71 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 71 (143)
|.+.+|+++|+|||||||+|+.|++.++.. .++..|.++..+-. ....+ .+..+..+. .+..
T Consensus 1 ~~~~~i~i~G~~G~GKst~a~~l~~~~~~~----~~~~~D~~r~~~r~-~~~~~p~l~~s~~~a~~~~~~~~~~~-~~~~ 74 (197)
T PRK12339 1 MESTIHFIGGIPGVGKTSISGYIARHRAID----IVLSGDYLREFLRP-YVDDEPVLAKSVYDAWEFYGSMTDEN-IVKG 74 (197)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCe----EEehhHHHHHHHHH-hcCCCCCcccccHHHHHHcCCcchhH-HHHH
Confidence 467899999999999999999999987532 24444544444321 11111 122111111 1110
Q ss_pred -----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH-HHHHhhhhhc
Q psy2713 72 -----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE-ILEHNIKQSM 140 (143)
Q Consensus 72 -----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~r~~~r~~ 140 (143)
......+..+.+.+...|..+|+|+++..+..++... ..+. .++++.+++++ +.+|...|.+
T Consensus 75 y~~q~~~v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~~~-----~~~v--~~i~l~v~d~e~lr~Rl~~R~~ 142 (197)
T PRK12339 75 YLDQARAIMPGINRVIRRALLNGEDLVIESLYFHPPMIDENR-----TNNI--RAFYLYIRDAELHRSRLADRIN 142 (197)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHHHH-----hcCe--EEEEEEeCCHHHHHHHHHHHhh
Confidence 1122335555555544588999999999887764322 2233 34445555555 4466666653
No 44
>PRK01184 hypothetical protein; Provisional
Probab=99.48 E-value=1e-12 Score=89.70 Aligned_cols=121 Identities=15% Similarity=0.202 Sum_probs=67.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHH-HHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQ-EDATKW 84 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 84 (143)
.+|+|+|+|||||||+++ +++.++. .+++.++..+...... +.+ .....+.....++.......+ ..+...
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~-----~~i~~~d~lr~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 74 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGI-----PVVVMGDVIREEVKKR-GLEPTDENIGKVAIDLRKELGMDAVAKRTVPK 74 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCC-----cEEEhhHHHHHHHHHc-CCCCCcHHHHHHHHHHHHHHChHHHHHHHHHH
Confidence 489999999999999987 6666653 3456555433332111 111 111111111111211111111 111222
Q ss_pred H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+ ..++..+|+|++ ......+.+.+ .+ +..+.+|.+.||.++..+|...|.
T Consensus 75 i~~~~~~~vvidg~-r~~~e~~~~~~-~~---~~~~~~i~v~~~~~~~~~Rl~~R~ 125 (184)
T PRK01184 75 IREKGDEVVVIDGV-RGDAEVEYFRK-EF---PEDFILIAIHAPPEVRFERLKKRG 125 (184)
T ss_pred HHhcCCCcEEEeCC-CCHHHHHHHHH-hC---CcccEEEEEECCHHHHHHHHHHcC
Confidence 3 334678999998 45555666666 54 234567888999999999988775
No 45
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.48 E-value=2.5e-13 Score=95.65 Aligned_cols=128 Identities=17% Similarity=0.194 Sum_probs=74.9
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC-CccccCchhhhhHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH-DIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
-+.|+-|++.|+|||||||+|+.|++.++..++ +.|+..+......... .........+..+...+....+.+.
T Consensus 3 ~~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i-----s~gdllr~~~~~~t~lg~~i~~~~~~G~lvpd~iv~~lv~~~ 77 (229)
T PTZ00088 3 LKGPLKIVLFGAPGVGKGTFAEILSKKENLKHI-----NMGNILREEIKAKTTIGKEIQKVVTSGNLVPDNLVIAIVKDE 77 (229)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCcEE-----ECChHHHHHhhcCChHHHHHHHHHHcCCcCCHHHHHHHHHHH
Confidence 345666999999999999999999999887665 4454443322110000 0000000000001111111222222
Q ss_pred H-HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 82 T-KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 82 ~-~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+ +.+......+|+|+.+.+..++..+.+ . +-...++++.+|++++++|-..|+-
T Consensus 78 l~~~~~~~~~g~iLDGfPRt~~Qa~~l~~-~----~~~~~vi~l~~~~~~~~~Rl~~Rr~ 132 (229)
T PTZ00088 78 IAKVTDDCFKGFILDGFPRNLKQCKELGK-I----TNIDLFVNIYLPRNILIKKLLGRRI 132 (229)
T ss_pred HHhhccccCceEEEecCCCCHHHHHHHHh-c----CCCCEEEEEeCCHHHHHHHHHcCcC
Confidence 2 212233567999999999888777665 3 2334578889999999999988863
No 46
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=99.47 E-value=5.1e-13 Score=89.69 Aligned_cols=112 Identities=14% Similarity=0.131 Sum_probs=66.6
Q ss_pred EccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeE
Q psy2713 12 VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEV 91 (143)
Q Consensus 12 ~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (143)
.|+|||||||+++.|+..++..+++.|.+......+... .+.. +... . +..+....-..+...+..++..
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~~d~~~~~~~~~~~~---~g~~-~~~~--~----~~~~~~~~~~~~~~~~~~~~~~ 70 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMA---SGEP-LNDD--D----RKPWLQALNDAAFAMQRTNKVS 70 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEeCccCCchhhhcccc---CCCC-CChh--h----HHHHHHHHHHHHHHHHHcCCce
Confidence 499999999999999999987766666553211111110 1111 1111 1 1111111111111222334555
Q ss_pred EEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 92 AIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 92 vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+|+ +++.....| + ++++.+.++.+|++.||.+++.+|..+|.
T Consensus 71 viv-~s~~~~~~r----~-~~~~~~~~~~~v~l~a~~~~l~~Rl~~R~ 112 (163)
T PRK11545 71 LIV-CSALKKHYR----D-LLREGNPNLSFIYLKGDFDVIESRLKARK 112 (163)
T ss_pred EEE-EecchHHHH----H-HHHccCCCEEEEEEECCHHHHHHHHHhcc
Confidence 555 788766655 4 45557888999999999999999988886
No 47
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.45 E-value=3.1e-13 Score=92.21 Aligned_cols=122 Identities=15% Similarity=0.194 Sum_probs=68.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
..+|++.|+|||||||+|+.|++.++..++ +.+++.+........ ..++.. + ...........+..
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g~~~~-----~~g~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~l~~ 73 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYGFTHL-----STGDLLRAEVASGSERGKQLQAIMES-G---DLVPLDTVLDLLKD 73 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCcEE-----eHHHHHHHHHhcCCHHHHHHHHHHHC-C---CCCCHHHHHHHHHH
Confidence 458999999999999999999999865444 554443332110000 000000 0 00000001111111
Q ss_pred HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+......+..+|+|+.+.+..+...+.. ....+..++++.||.+.+.+|...|..
T Consensus 74 ~~~~~~~~~~~~i~dg~~~~~~q~~~~~~----~~~~~~~vi~l~~~~~~~~~Rl~~R~~ 129 (188)
T TIGR01360 74 AMVAALGTSKGFLIDGYPREVKQGEEFER----RIGPPTLVLYFDCSEDTMVKRLLKRAE 129 (188)
T ss_pred HHHcccCcCCeEEEeCCCCCHHHHHHHHH----cCCCCCEEEEEECCHHHHHHHHHcccc
Confidence 11111123678999998876655444433 223455678889999999999887753
No 48
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.44 E-value=3.6e-13 Score=90.13 Aligned_cols=109 Identities=19% Similarity=0.276 Sum_probs=68.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
.-|+|+|+|||||||+++.||+.|+..++|+|.+........ ..++|..++++.++..+. ..+.++ +.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~~g~s------I~eIF~~~GE~~FR~~E~---~vl~~l---~~ 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKRTGMS------IAEIFEEEGEEGFRRLET---EVLKEL---LE 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHHHCcC------HHHHHHHHhHHHHHHHHH---HHHHHH---hh
Confidence 468999999999999999999999998887777655443322 335565555554443332 223222 22
Q ss_pred cCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 87 NDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 87 ~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
. +..||--+ +...++.|..+.+ ++ .+|++.+|.+++.+|-.
T Consensus 71 ~-~~~ViaTGGG~v~~~enr~~l~~-----~g---~vv~L~~~~e~l~~Rl~ 113 (172)
T COG0703 71 E-DNAVIATGGGAVLSEENRNLLKK-----RG---IVVYLDAPFETLYERLQ 113 (172)
T ss_pred c-CCeEEECCCccccCHHHHHHHHh-----CC---eEEEEeCCHHHHHHHhc
Confidence 2 22333222 3455666665554 33 45777889999988876
No 49
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=99.44 E-value=3.2e-12 Score=86.84 Aligned_cols=119 Identities=14% Similarity=0.119 Sum_probs=69.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
...+++++|++||||||+++.|+..++...++.+.+....-.+... .+..+.+ . ....+......... ..
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~~~i~gd~~~~~~~~r~~~---~g~~~~~-~--~~~~~~~~~~~~~~----~~ 71 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSAKFIDGDDLHPAKNIDKMS---QGIPLTD-E--DRLPWLERLNDASY----SL 71 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCEEECCcccCCHhHHHHHh---cCCCCCc-c--cchHHHHHHHHHHH----HH
Confidence 3468999999999999999999998876555454442211111111 1122111 1 11111111111111 11
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+..+...+|+ +++..+..|+.. ++.+.++.+|++.||.+++.+|-.+|.
T Consensus 72 ~~~~~~g~iv-~s~~~~~~R~~~-----r~~~~~~~~v~l~a~~~~l~~Rl~~R~ 120 (176)
T PRK09825 72 YKKNETGFIV-CSSLKKQYRDIL-----RKSSPNVHFLWLDGDYETILARMQRRA 120 (176)
T ss_pred HhcCCCEEEE-EEecCHHHHHHH-----HhhCCCEEEEEEeCCHHHHHHHHhccc
Confidence 2222334455 777777666544 456788899999999999999998885
No 50
>PRK13808 adenylate kinase; Provisional
Probab=99.44 E-value=8.8e-13 Score=97.00 Aligned_cols=121 Identities=18% Similarity=0.201 Sum_probs=73.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
-|+|.|+|||||||+|..|++.++..+++ .+++.+..+..... .+++.. +..+...+....+.+-+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is-----~gdlLR~~i~~~s~~g~~~~~~~~~----G~lVPdeiv~~li~e~l 72 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS-----TGDMLRAAVAAGTPVGLKAKDIMAS----GGLVPDEVVVGIISDRI 72 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec-----ccHHHHHHhhcCChhhHHHHHHHHc----CCCCCHHHHHHHHHHHH
Confidence 37889999999999999999999876654 34433332211100 000000 00111111111221111
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCE-EEEEEeecCcHHHHHHhhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFK-VLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~r~~~r~ 139 (143)
... .....+|+|+++.+.++.+.|.+ ++...++. -++|++.||++++++|-..|.
T Consensus 73 ~~~-~~~~G~ILDGFPRt~~QA~~L~~-ll~~~gi~PDlVI~LDVp~evll~Rl~~R~ 128 (333)
T PRK13808 73 EQP-DAANGFILDGFPRTVPQAEALDA-LLKDKQLKLDAVVELRVNEGALLARVETRV 128 (333)
T ss_pred hcc-cccCCEEEeCCCCCHHHHHHHHH-HHHhcCCCcCeEEEEECCHHHHHHHHHcCc
Confidence 111 12346999999999998888887 77665543 367889999999999988773
No 51
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=99.43 E-value=1.2e-12 Score=86.74 Aligned_cols=118 Identities=19% Similarity=0.245 Sum_probs=69.5
Q ss_pred EEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
+.|+|||||||+|+.|+++++.. .++.++..+...... .+. .......+..+...+....+...+.. ..
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~-----~is~~~llr~~~~~~--s~~g~~i~~~l~~g~~vp~~~v~~ll~~~l~~-~~ 72 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLV-----HISVGDLLREEIKSD--SELGKQIQEYLDNGELVPDELVIELLKERLEQ-PP 72 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSE-----EEEHHHHHHHHHHTT--SHHHHHHHHHHHTTSS--HHHHHHHHHHHHHS-GG
T ss_pred CcCCCCCChHHHHHHHHHhcCcc-----eechHHHHHHHHhhh--hHHHHHHHHHHHhhccchHHHHHHHHHHHHhh-hc
Confidence 57999999999999999998754 446666555433211 000 00000011112222222222221111 12
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhh
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIK 137 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~ 137 (143)
....+|+|+.+.+..+.+.|.+ .+...+... .+|.+.||++++.+|...
T Consensus 73 ~~~g~ildGfPrt~~Qa~~l~~-~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 73 CNRGFILDGFPRTLEQAEALEE-ILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp TTTEEEEESB-SSHHHHHHHHH-HHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred ccceeeeeeccccHHHHHHHHH-HHhhcccchheeeccccchhhhhhhccc
Confidence 3578999999999998888887 776566555 788999999999998653
No 52
>PRK14528 adenylate kinase; Provisional
Probab=99.43 E-value=1.3e-12 Score=89.44 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=73.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
..|++.|+|||||||+|+.|++.++..++ +.++..+........ ..+++. +..+..... ...+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~i-----s~~~~lr~~~~~~~~~g~~~~~~~~~----g~lvp~~~~---~~~~ 69 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQI-----STGDILREAVKNQTAMGIEAKRYMDA----GDLVPDSVV---IGII 69 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCee-----eCCHHHHHHhhcCCHHHHHHHHHHhC----CCccCHHHH---HHHH
Confidence 35889999999999999999999876554 455544332221100 001110 000111111 1112
Q ss_pred HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhhc
Q psy2713 82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+.+. .....+|+|+.+.+.++-+.+.+ ++...+. .-.+|++.||.+++.+|-..|..
T Consensus 70 ~~~l~~~~~~~g~viDG~Pr~~~qa~~l~~-~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~ 130 (186)
T PRK14528 70 KDRIREADCKNGFLLDGFPRTVEQADALDA-LLKNEGKSIDKAINLEVPDGELLKRLLGRAE 130 (186)
T ss_pred HHHHhCcCccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhcCcc
Confidence 22221 12346999999888888888877 7665443 33678899999999999988853
No 53
>PRK14530 adenylate kinase; Provisional
Probab=99.41 E-value=2.8e-12 Score=89.69 Aligned_cols=123 Identities=15% Similarity=0.215 Sum_probs=68.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHH-H-HHHHHHHHHH-
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQ-L-SAREAQEDAT- 82 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~- 82 (143)
...|+|+|+|||||||+|+.|++.++..++ +.+++.+..... ...+.....+.....+.. . ........++
T Consensus 3 ~~~I~i~G~pGsGKsT~~~~La~~~~~~~i-----~~g~~lr~~~~~-~~~~~~~~~~~~~~~~~~g~~~~d~~~~~~l~ 76 (215)
T PRK14530 3 QPRILLLGAPGAGKGTQSSNLAEEFGVEHV-----TTGDALRANKQM-DISDMDTEYDTPGEYMDAGELVPDAVVNEIVE 76 (215)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEE-----eccHHHHHhccC-CcccccchHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 346899999999999999999999876554 444443332100 000111000000000000 0 0001112222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.+.. ...+|+|+.+.+.++.+.+.. .. . .-.+|++.+|.+.+.+|-..|..
T Consensus 77 ~~l~~-~~~~IldG~pr~~~q~~~l~~-~~---~-~d~vI~Ld~~~~~l~~Rl~~R~~ 128 (215)
T PRK14530 77 EALSD-ADGFVLDGYPRNLEQAEYLES-IT---D-LDVVLYLDVSEEELVDRLTGRRV 128 (215)
T ss_pred HHHhc-CCCEEEcCCCCCHHHHHHHHH-hc---C-CCEEEEEeCCHHHHHHHHhCCCc
Confidence 22222 346899998888776666554 32 2 23468889999999999888764
No 54
>PLN02459 probable adenylate kinase
Probab=99.41 E-value=2e-12 Score=92.22 Aligned_cols=126 Identities=16% Similarity=0.212 Sum_probs=74.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-ccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-IFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.|+|.|+|||||||+|+.|++.++..++ +.++..+.......... ........+..+...+....+...+..
T Consensus 29 ~~~ii~~G~PGsGK~T~a~~la~~~~~~~i-----s~gdllR~ei~~~t~lg~~i~~~~~~G~lVPdeiv~~ll~~~l~~ 103 (261)
T PLN02459 29 NVNWVFLGCPGVGKGTYASRLSKLLGVPHI-----ATGDLVREEIKSSGPLGAQLKEIVNQGKLVPDEIIFSLLSKRLEA 103 (261)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCcEE-----eCcHHHHHHHhccchhHHHHHHHHHcCCccCHHHHHHHHHHHHhc
Confidence 356888999999999999999999887665 44444333222110000 000000111112222222222221111
Q ss_pred H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
. ......+|+|+++.+..+.+.|.. .. .. -.+|++.||++.+++|-..|..+
T Consensus 104 ~~~~~~~g~iLDGFPRt~~Qa~~Le~-~~---~i-d~Vi~L~v~d~~l~~Rl~gR~~~ 156 (261)
T PLN02459 104 GEEEGESGFILDGFPRTVRQAEILEG-VT---DI-DLVVNLKLREEVLVEKCLGRRIC 156 (261)
T ss_pred ccccCCceEEEeCCCCCHHHHHHHHh-cC---CC-CEEEEEECCHHHHHHHhhccccc
Confidence 1 123467999999999988877766 42 22 34788899999999999988644
No 55
>PRK00625 shikimate kinase; Provisional
Probab=99.37 E-value=2.8e-12 Score=86.83 Aligned_cols=31 Identities=29% Similarity=0.536 Sum_probs=27.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.|+++|+|||||||+++.|++.++..++++|
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999987665444
No 56
>PRK02496 adk adenylate kinase; Provisional
Probab=99.36 E-value=3.3e-12 Score=87.19 Aligned_cols=120 Identities=17% Similarity=0.215 Sum_probs=71.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
+-|+|.|+|||||||+|+.|++.++..++ +.++..+........ ..+... +...........+
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i-----~~~~~~~~~~~~~~~~g~~~~~~~~~----g~~~~~~~~~~~l--- 69 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHI-----STGDILRQAIKEQTPLGIKAQGYMDK----GELVPDQLVLDLV--- 69 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEE-----EhHHHHHHHHhccChhHHHHHHHHHC----CCccCHHHHHHHH---
Confidence 34888999999999999999999875544 555444332211100 000000 0001111111111
Q ss_pred HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+.+. .....+|+|+.+.+..+.+.+.. .++..+ .+..++.+.+|.+.+.+|...|.
T Consensus 70 ~~~l~~~~~~~g~vldGfPr~~~q~~~l~~-~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 129 (184)
T PRK02496 70 QERLQQPDAANGWILDGFPRKVTQAAFLDE-LLQEIGQSGERVVNLDVPDDVVVERLLARG 129 (184)
T ss_pred HHHHhCcCccCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence 12221 12346999999988887777776 665544 34467888999999999988774
No 57
>PRK14526 adenylate kinase; Provisional
Probab=99.36 E-value=2.8e-12 Score=89.36 Aligned_cols=118 Identities=18% Similarity=0.349 Sum_probs=68.8
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
|++.|+|||||||+|+.|++.++..++ +.++..+....... + .++++ .+......+....+.+.+.
T Consensus 3 i~l~G~pGsGKsT~a~~La~~~~~~~i-----s~G~llr~~~~~~t~~g~~i~~~~~----~g~lvpd~~~~~lv~~~l~ 73 (211)
T PRK14526 3 LVFLGPPGSGKGTIAKILSNELNYYHI-----STGDLFRENILNSTPLGKEIKQIVE----NGQLVPDSITIKIVEDKIN 73 (211)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCcee-----ecChHHHHhcccCChhhHHHHHHHH----cCccCChHHHHHHHHHHHh
Confidence 788999999999999999999876554 44444333211100 0 00010 0001111111122222211
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
.. .....+|+|+++.+..+.+.+.+ .+.. ..++++.+|++++.+|...|..+
T Consensus 74 ~~-~~~~g~ilDGfPR~~~Qa~~l~~-~~~~----~~vi~l~~~~~~~~~Rl~~R~~~ 125 (211)
T PRK14526 74 TI-KNNDNFILDGFPRNINQAKALDK-FLPN----IKIINFLIDEELLIKRLSGRRIC 125 (211)
T ss_pred cc-cccCcEEEECCCCCHHHHHHHHH-hcCC----CEEEEEECCHHHHHHHHHCCCcc
Confidence 11 12456899999999888777766 4321 34567779999999999988644
No 58
>PRK13948 shikimate kinase; Provisional
Probab=99.34 E-value=5.5e-12 Score=85.99 Aligned_cols=109 Identities=24% Similarity=0.252 Sum_probs=61.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
+..|+++|+|||||||+++.|++.+++.++|+|.+ .+...+. ...++|...++..+ ++. ....+..+ +
T Consensus 10 ~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D~~-----ie~~~g~-si~~if~~~Ge~~f--R~~-E~~~l~~l---~ 77 (182)
T PRK13948 10 VTWVALAGFMGTGKSRIGWELSRALMLHFIDTDRY-----IERVTGK-SIPEIFRHLGEAYF--RRC-EAEVVRRL---T 77 (182)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCEEECCHH-----HHHHHhC-CHHHHHHHhCHHHH--HHH-HHHHHHHH---H
Confidence 57999999999999999999999998776655543 3333221 11233433332222 111 11222222 2
Q ss_pred hcCCeEEEE--eCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 86 KNDGEVAII--DGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 86 ~~~~~~vi~--d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
.. +..||. .++...+++++.+.+ .+ . +|++.+|.+++.+|.
T Consensus 78 ~~-~~~VIa~GgG~v~~~~n~~~l~~-----~g-~--vV~L~~~~e~l~~Rl 120 (182)
T PRK13948 78 RL-DYAVISLGGGTFMHEENRRKLLS-----RG-P--VVVLWASPETIYERT 120 (182)
T ss_pred hc-CCeEEECCCcEEcCHHHHHHHHc-----CC-e--EEEEECCHHHHHHHh
Confidence 22 323333 234556666555443 22 2 456678999999886
No 59
>KOG3062|consensus
Probab=99.32 E-value=8.4e-12 Score=86.28 Aligned_cols=121 Identities=20% Similarity=0.178 Sum_probs=83.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCC-ceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK-SKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
.+|++||.|.|||||.|+.|.+.|...+.+ +..+..|.- ++-..... |.. +.....+|.. +...++.-
T Consensus 2 pLVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~ns~-y~~-s~~EK~lRg~-----L~S~v~R~ 70 (281)
T KOG3062|consen 2 PLVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEKNSN-YGD-SQAEKALRGK-----LRSAVDRS 70 (281)
T ss_pred CeEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCCccc-ccc-cHHHHHHHHH-----HHHHHHhh
Confidence 379999999999999999999999877654 444433322 11111112 211 1222233332 33333333
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
-+.+.+||+|+-|+-+..|-.++. +++..+....+|++.||.+.|.+.|..|-
T Consensus 71 Lsk~~iVI~DslNyIKGfRYeLyC-~ak~~~tt~Cvv~t~vp~e~~r~~Ns~~~ 123 (281)
T KOG3062|consen 71 LSKGDIVIVDSLNYIKGFRYELYC-EAKAARTTYCVVHTAVPQELCREWNSERE 123 (281)
T ss_pred cccCcEEEEecccccccceeeeee-ehhccceeEEEEEecCCHHHHHHhcccCC
Confidence 345889999999999999999999 98888888888999999999999996653
No 60
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.32 E-value=1.6e-11 Score=82.66 Aligned_cols=33 Identities=18% Similarity=0.328 Sum_probs=28.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
.++.+|+|+|+|||||||+|+.|++.++..+++
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d 34 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFID 34 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 356799999999999999999999998765543
No 61
>PRK07261 topology modulation protein; Provisional
Probab=99.30 E-value=3.7e-11 Score=81.26 Aligned_cols=99 Identities=18% Similarity=0.240 Sum_probs=58.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
-|+++|+|||||||+|+.|++.++...++.|.+ .-. .. +.....+ .....+.+.+..
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~-----~~~-------~~-~~~~~~~----------~~~~~~~~~~~~ 58 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTL-----HFQ-------PN-WQERDDD----------DMIADISNFLLK 58 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCE-----Eec-------cc-cccCCHH----------HHHHHHHHHHhC
Confidence 489999999999999999998876554433333 110 01 1110011 111112223332
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+ ..|+|+++........+.. ++. +|.+.+|...|+.|.++|.
T Consensus 59 -~-~wIidg~~~~~~~~~~l~~-------ad~-vI~Ld~p~~~~~~R~lkR~ 100 (171)
T PRK07261 59 -H-DWIIDGNYSWCLYEERMQE-------ADQ-IIFLNFSRFNCLYRAFKRY 100 (171)
T ss_pred -C-CEEEcCcchhhhHHHHHHH-------CCE-EEEEcCCHHHHHHHHHHHH
Confidence 3 3999999876432322222 222 5777899999999998884
No 62
>PRK13946 shikimate kinase; Provisional
Probab=99.30 E-value=1e-11 Score=84.87 Aligned_cols=114 Identities=19% Similarity=0.245 Sum_probs=64.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+..|+++|+|||||||+++.|++.++..++++|.+ .....+. ...+++...+.... + .. -..+...
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~~-----~~~~~g~-~~~e~~~~~ge~~~--~-~~----e~~~l~~ 75 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADTE-----IERAARM-TIAEIFAAYGEPEF--R-DL----ERRVIAR 75 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCHH-----HHHHhCC-CHHHHHHHHCHHHH--H-HH----HHHHHHH
Confidence 357899999999999999999999998887777653 2221110 00111211111111 1 11 1122222
Q ss_pred HhcCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+...+..||... ++..+..|+.+.+ .+ +.|++.+|.+++.+|..+|.
T Consensus 76 l~~~~~~Vi~~ggg~~~~~~~r~~l~~-----~~---~~v~L~a~~e~~~~Rl~~r~ 124 (184)
T PRK13946 76 LLKGGPLVLATGGGAFMNEETRAAIAE-----KG---ISVWLKADLDVLWERVSRRD 124 (184)
T ss_pred HHhcCCeEEECCCCCcCCHHHHHHHHc-----CC---EEEEEECCHHHHHHHhcCCC
Confidence 222344455442 4556655555443 22 34778899999999987664
No 63
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=99.29 E-value=1.7e-10 Score=87.99 Aligned_cols=124 Identities=19% Similarity=0.231 Sum_probs=75.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh---c----------CCCCccccC-------ch
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL---Y----------NSHDIFRVD-------NT 64 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~---~----------~~~~~~~~~-------~~ 64 (143)
.|.+|+++|+|||||||+|..|+.+++.. .+++.|.++..+... . ..+...... ..
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~----~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~~~~~~~~~ 329 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGIT----RIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPGEGLPAEPT 329 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCc----EEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcccccccccc
Confidence 58999999999999999999999998763 255667665543210 0 000111000 00
Q ss_pred hhhhHHHH-----HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 65 EGYNIRQL-----SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 65 ~~~~~~~~-----~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
....+... .+...++.+++..-..|..+|+|+....+...+ .....+..++.+.+.|++++.++++..
T Consensus 330 ~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~-----~~~~~~~~~i~flv~isdeeeH~~Rf~ 402 (475)
T PRK12337 330 RAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLR-----HPYQAGALVVPMLVTLPDEALHRRRFE 402 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHH-----HHHhcCCceEEEEEEECCHHHHHHHHH
Confidence 10111111 122335555655544588999999999998654 222345666777888898886665543
No 64
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=99.28 E-value=2.9e-10 Score=77.94 Aligned_cols=129 Identities=15% Similarity=0.045 Sum_probs=68.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHH-HHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLS-AREAQE 79 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 79 (143)
++|++.|++||||||+++.|++.+...|.+...+.... ..+..+... . ..........+.... -.....
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~r~~~~~ 76 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLTREPGGTPIGEAIRELLLDP---E-DEKMDPRAELLLFAADRAQHVE 76 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCCchHHHHHHHHhcc---C-ccCCCHHHHHHHHHHHHHHHHH
Confidence 47999999999999999999999977677665553221 111111110 0 000001100000000 011112
Q ss_pred HHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 80 DATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.+......+..+|+|-.... ......+.. +......+..++++.+|.+++.+|...|..
T Consensus 77 ~~~~~~~~~~~~vi~DR~~~s~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 148 (200)
T cd01672 77 EVIKPALARGKIVLSDRFVDSSLAYQGAGRGLGEALIEALND-LATGGLKPDLTILLDIDPEVGLARIEARGR 148 (200)
T ss_pred HHHHHHHhCCCEEEECCCcchHHHhCccccCCCHHHHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 222222235788999832211 112233333 333333455778889999999999988764
No 65
>PRK06696 uridine kinase; Validated
Probab=99.27 E-value=2.8e-11 Score=85.11 Aligned_cols=46 Identities=26% Similarity=0.341 Sum_probs=38.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
...|.+|.+.|+|||||||+|+.|++.|+..+.....++.|+|...
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~ 64 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP 64 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC
Confidence 3468899999999999999999999999776766677778887544
No 66
>PRK12338 hypothetical protein; Provisional
Probab=99.27 E-value=1.8e-10 Score=84.37 Aligned_cols=128 Identities=17% Similarity=0.169 Sum_probs=72.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc----ccc----------C----chh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI----FRV----------D----NTE 65 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~----~~~----------~----~~~ 65 (143)
+.|.+|+++|+|||||||+|+.|+++++... ++..|.++..+... .+.++ ... . +.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~----~~~tD~~r~~~~~~-~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~ 76 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKH----LIETDFIREVVRGI-IGKEYAPALHKSSYNAYTALRDKENFKNNE 76 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeE----EccChHHHHHHcCC-CCcccCchhhcccHHHHhhcCCcccccchH
Confidence 4678999999999999999999999987543 23445444443221 01110 000 0 000
Q ss_pred hhhH-----HHHHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 66 GYNI-----RQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 66 ~~~~-----~~~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
...+ ....+...++.+++.....|..+|+++....+..... . .+. ....+.++.+..+.++.++|-..|.+
T Consensus 77 ~~i~~gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~--~-~~~-~~~~v~~~vl~~dee~h~~Rf~~R~~ 152 (319)
T PRK12338 77 ELICAGFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDI--E-QFE-ENASIHFFILSADEEVHKERFVKRAM 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhh--h-hhc-ccCceEEEEEECCHHHHHHHHHHhhh
Confidence 0001 1112333445555544456889999999888764432 1 111 22345555556566667777777654
No 67
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=99.27 E-value=5.2e-11 Score=89.37 Aligned_cols=98 Identities=23% Similarity=0.314 Sum_probs=71.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAR 75 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (143)
..+|.+|+|+|+.||||||.+.+||.+|...+.++.++++|.||+..++ .+.+.++|... +.++.. ++.
T Consensus 97 ~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~----Iak 172 (451)
T COG0541 97 KKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVE----IAK 172 (451)
T ss_pred CCCCeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHH----HHH
Confidence 4568999999999999999999999999889999999999999999765 34577888653 222222 223
Q ss_pred HHHHHHHHHH-hcCCeEEEEeCCchhHHHHHHHH
Q psy2713 76 EAQEDATKWL-KNDGEVAIIDGTTATMEKRKQIH 108 (143)
Q Consensus 76 ~~~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~ 108 (143)
..+ +.+ ...-+++|+|+.....-.-+.+.
T Consensus 173 ~al----~~ak~~~~DvvIvDTAGRl~ide~Lm~ 202 (451)
T COG0541 173 AAL----EKAKEEGYDVVIVDTAGRLHIDEELMD 202 (451)
T ss_pred HHH----HHHHHcCCCEEEEeCCCcccccHHHHH
Confidence 333 333 33457899999886664433333
No 68
>PRK07667 uridine kinase; Provisional
Probab=99.27 E-value=8.1e-11 Score=81.05 Aligned_cols=44 Identities=18% Similarity=0.362 Sum_probs=39.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.+.+|.|+|+|||||||+|+.|++.++..+.++.+++.|++...
T Consensus 16 ~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~ 59 (193)
T PRK07667 16 NRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVE 59 (193)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccch
Confidence 35799999999999999999999999888899999999986543
No 69
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.26 E-value=3.6e-11 Score=79.51 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
|+++|+|||||||+|+.|++.+++.+++.+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999977655444
No 70
>PRK13949 shikimate kinase; Provisional
Probab=99.26 E-value=2.5e-11 Score=81.97 Aligned_cols=33 Identities=33% Similarity=0.379 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
-|+++|+|||||||+++.|++.++..++++|.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D~~ 35 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLDFF 35 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeecccHH
Confidence 589999999999999999999998777765543
No 71
>PRK08233 hypothetical protein; Provisional
Probab=99.25 E-value=5.6e-11 Score=80.66 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=25.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|++.+|++.|+|||||||+|+.|++.++
T Consensus 1 ~~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 1 KKTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4578999999999999999999999875
No 72
>PRK00698 tmk thymidylate kinase; Validated
Probab=99.25 E-value=5.8e-10 Score=77.05 Aligned_cols=35 Identities=14% Similarity=0.247 Sum_probs=29.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV 39 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~ 39 (143)
+..+|++.|++||||||+++.|++.+...+..+..
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~~~~~~~~~ 36 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLEQQGRDVVF 36 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceeE
Confidence 56899999999999999999999998766544333
No 73
>PTZ00301 uridine kinase; Provisional
Probab=99.25 E-value=8.3e-11 Score=81.93 Aligned_cols=45 Identities=20% Similarity=0.244 Sum_probs=33.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHcc-CCCC-ceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTW-TDHK-SKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~-~~~~~~d~~~~~ 48 (143)
|+..+|.+.|+|||||||+|+.|++.+.. .+.. +.+++.|+|...
T Consensus 1 ~~~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~ 47 (210)
T PTZ00301 1 MPCTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRD 47 (210)
T ss_pred CCCEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccC
Confidence 45689999999999999999999987742 2322 346777877543
No 74
>PRK06217 hypothetical protein; Validated
Probab=99.24 E-value=1.2e-10 Score=79.60 Aligned_cols=105 Identities=17% Similarity=0.160 Sum_probs=59.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
+.|+|+|.|||||||+|+.|++.++..+++. |.+.... .+..+... .... .....+.+.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~~~-----D~~~~~~----~~~~~~~~-~~~~---------~~~~~~~~~~~ 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHLDT-----DDYFWLP----TDPPFTTK-RPPE---------ERLRLLLEDLR 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEEEc-----Cceeecc----CCCCcccc-CCHH---------HHHHHHHHHHh
Confidence 3599999999999999999999987655444 4332211 01111111 1110 11122222222
Q ss_pred cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
. +..+|+|+..... .+.+.. . .. .+|++.+|.+++..|-..|..
T Consensus 63 ~-~~~~vi~G~~~~~--~~~~~~----~--~d-~~i~Ld~~~~~~~~Rl~~R~~ 106 (183)
T PRK06217 63 P-REGWVLSGSALGW--GDPLEP----L--FD-LVVFLTIPPELRLERLRLREF 106 (183)
T ss_pred c-CCCEEEEccHHHH--HHHHHh----h--CC-EEEEEECCHHHHHHHHHcCcc
Confidence 2 3468888776542 222222 2 22 256778999999999988753
No 75
>PRK06547 hypothetical protein; Provisional
Probab=99.23 E-value=1.8e-10 Score=77.91 Aligned_cols=117 Identities=17% Similarity=0.087 Sum_probs=65.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHH------
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSARE------ 76 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 76 (143)
++.+.+|+++|+|||||||+|+.|++.++...+ +.|++...... .+ . ....+.+.....
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~-----~~d~~~~~~~~----~~-----~-~~~~l~~~~l~~g~~~~~ 76 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV-----HLDDLYPGWHG----LA-----A-ASEHVAEAVLDEGRPGRW 76 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee-----cccceeccccc----CC-----h-HHHHHHHHHHhCCCCcee
Confidence 456789999999999999999999998765444 44443221000 00 0 000000000000
Q ss_pred HH----HHHHHH-HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 77 AQ----EDATKW-LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 77 ~~----~~~~~~-l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+ ...... ....+.++|+++..... ..+.+ ++.+ +..++.|++.+|.++..+|.++|-
T Consensus 77 ~yd~~~~~~~~~~~l~~~~vVIvEG~~al~---~~~r~-~~d~-~g~v~~I~ld~~~~vr~~R~~~Rd 139 (172)
T PRK06547 77 RWDWANNRPGDWVSVEPGRRLIIEGVGSLT---AANVA-LASL-LGEVLTVWLDGPEALRKERALARD 139 (172)
T ss_pred cCCCCCCCCCCcEEeCCCCeEEEEehhhcc---HHHHH-Hhcc-CCCEEEEEEECCHHHHHHHHHhcC
Confidence 00 000000 01134578888876542 23455 5544 445678999999999999999883
No 76
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.23 E-value=2.9e-11 Score=76.96 Aligned_cols=33 Identities=33% Similarity=0.578 Sum_probs=28.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+|+++|+|||||||+|+.|++.++. .+++.|++
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~-----~~i~~d~~ 33 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGF-----PVISMDDL 33 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTC-----EEEEEHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCC-----eEEEecce
Confidence 6899999999999999999999864 45677774
No 77
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.22 E-value=1.4e-10 Score=79.45 Aligned_cols=26 Identities=23% Similarity=0.249 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+++|+|+|||||||+++.|+..++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~ 27 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQ 27 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCC
Confidence 35899999999999999999987754
No 78
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=99.22 E-value=1.5e-09 Score=74.61 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=30.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
+.++|++.|++||||||+++.|++.+...|++...+
T Consensus 2 ~g~~IvieG~~GsGKsT~~~~L~~~l~~~g~~v~~~ 37 (195)
T TIGR00041 2 RGMFIVIEGIDGAGKTTQANLLKKLLQENGYDVLFT 37 (195)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 357999999999999999999999998777655443
No 79
>PRK13947 shikimate kinase; Provisional
Probab=99.22 E-value=2.8e-11 Score=81.55 Aligned_cols=33 Identities=18% Similarity=0.320 Sum_probs=28.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.|+++|+|||||||+|+.|++.|++.+++.|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~~ 35 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDKE 35 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECchh
Confidence 489999999999999999999998877655543
No 80
>PRK04040 adenylate kinase; Provisional
Probab=99.21 E-value=3.7e-10 Score=77.49 Aligned_cols=40 Identities=25% Similarity=0.316 Sum_probs=31.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
+.+|+++|+|||||||+++.|++.+. .....++.+++...
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~---~~~~~~~~g~~~~~ 41 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK---EDYKIVNFGDVMLE 41 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc---cCCeEEecchHHHH
Confidence 67999999999999999999999984 12345666766544
No 81
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=99.20 E-value=1.4e-09 Score=79.07 Aligned_cols=127 Identities=18% Similarity=0.197 Sum_probs=71.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh---h----------cCCCCccccC-chhhhhH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE---L----------YNSHDIFRVD-NTEGYNI 69 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~---~----------~~~~~~~~~~-~~~~~~~ 69 (143)
..|.+|+++|++||||||+|..|+++|+.. .+++.|.+++.+-. . +......... ..+...+
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~~----~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~~~~~~l 165 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGIR----SVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPPPEPPVI 165 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCC----EEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCCCchhhh
Confidence 358899999999999999999999998532 36788877744311 0 1111111111 1111111
Q ss_pred HHH-----HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh-hhhh
Q psy2713 70 RQL-----SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN-IKQS 139 (143)
Q Consensus 70 ~~~-----~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~-~~r~ 139 (143)
... .....++.+++.....|..+|+.+....+...+ + ...++.- ++.+.+..++++.++.+ ..|.
T Consensus 166 ~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~---~-~~~~~~~-~i~~~l~i~~ee~h~~RF~~R~ 236 (301)
T PRK04220 166 YGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIK---E-KYLENPN-VFMFVLTLSDEEAHKARFYARA 236 (301)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHH---H-hhhcCCC-EEEEEEEECCHHHHHHHHHHHH
Confidence 111 122235555554434578999999998886322 2 2223333 33445666776655554 4444
No 82
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.20 E-value=2.9e-10 Score=77.43 Aligned_cols=41 Identities=34% Similarity=0.405 Sum_probs=37.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
+|.++|.|||||||+|+.|++.+...+.++.+++.|+|...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~ 41 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVP 41 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccC
Confidence 58999999999999999999999887888999999998753
No 83
>PRK13973 thymidylate kinase; Provisional
Probab=99.20 E-value=2e-09 Score=75.23 Aligned_cols=132 Identities=14% Similarity=0.048 Sum_probs=69.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLSAREA 77 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
|+..+|+|.|++||||||+++.|+++|...++++....... ..+....... ..-+++ .....+...--...
T Consensus 1 m~g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~-~~~~~~--~~~~ll~~a~r~~~ 77 (213)
T PRK13973 1 MRGRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGA-AELYGP--RMEALLFAAARDDH 77 (213)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCC-ccCCCH--HHHHHHHHHHHHHH
Confidence 45689999999999999999999999987777665553221 1111111100 011111 00001110000112
Q ss_pred HHHHHHHHhcCCeEEEEeCCchhH------------HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 78 QEDATKWLKNDGEVAIIDGTTATM------------EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 78 ~~~~~~~l~~~~~~vi~d~~~~~~------------~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+...+......|.+||.|-..... +....+.. .+.....+-+++.+.||.+++.+|..+|.
T Consensus 78 ~~~~i~~~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~-~~~~~~~PD~vi~Ldv~~e~~~~Rl~~R~ 150 (213)
T PRK13973 78 VEEVIRPALARGKIVLCDRFIDSTRAYQGVTGNVDPALLAALER-VAINGVMPDLTLILDIPAEVGLERAAKRR 150 (213)
T ss_pred HHHHHHHHHHCCCEEEEcchhhhHHHHcccccCCCHHHHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 222222222347788887654211 11112221 21111245677888999999999988775
No 84
>KOG3347|consensus
Probab=99.19 E-value=1.2e-10 Score=75.87 Aligned_cols=107 Identities=15% Similarity=0.209 Sum_probs=63.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
...|+++|-||+||||+|.+|++.++..+++ ..++-+.. +- +-|+.. -....+.+ ...++.+-..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~~~~i~-----isd~vkEn~l~-----~gyDE~-y~c~i~DE---dkv~D~Le~~ 72 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTGLEYIE-----ISDLVKENNLY-----EGYDEE-YKCHILDE---DKVLDELEPL 72 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhCCceEe-----hhhHHhhhcch-----hccccc-ccCccccH---HHHHHHHHHH
Confidence 3579999999999999999999998876653 33332221 11 001100 01111111 2334445555
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+..+|.+|=+.+....++ +|.+ +++-++||...+.+|-..|.
T Consensus 73 m~~Gg~IVDyHgCd~Fpe---rwfd----------lVvVLr~~~s~LY~RL~sRg 114 (176)
T KOG3347|consen 73 MIEGGNIVDYHGCDFFPE---RWFD----------LVVVLRTPNSVLYDRLKSRG 114 (176)
T ss_pred HhcCCcEEeecccCccch---hhee----------EEEEEecCchHHHHHHHHcC
Confidence 556666665666655553 2443 34557899999999987764
No 85
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.18 E-value=1.4e-10 Score=78.52 Aligned_cols=34 Identities=24% Similarity=0.260 Sum_probs=28.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
++..|+++|++||||||+++.|++.++...+++|
T Consensus 3 ~~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D 36 (172)
T PRK05057 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSD 36 (172)
T ss_pred CCCEEEEECCCCcCHHHHHHHHHHHcCCcEEECC
Confidence 4567999999999999999999999876555444
No 86
>PRK08118 topology modulation protein; Reviewed
Probab=99.18 E-value=2.6e-10 Score=76.86 Aligned_cols=98 Identities=20% Similarity=0.168 Sum_probs=57.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
-|+++|+|||||||+|+.|++.++...++.|.+ ... .. +.....+ ....+.+.+..
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l-----~~~-------~~-w~~~~~~-----------~~~~~~~~~~~ 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDAL-----FWK-------PN-WEGVPKE-----------EQITVQNELVK 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchh-----hcc-------cC-CcCCCHH-----------HHHHHHHHHhc
Confidence 489999999999999999999988766644433 111 00 1000111 01111111111
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
....|+|+..... .+.... . .+ .+|++.+|.+.+..|.++|.
T Consensus 59 -~~~wVidG~~~~~--~~~~l~-~-----~d-~vi~Ld~p~~~~~~R~~~R~ 100 (167)
T PRK08118 59 -EDEWIIDGNYGGT--MDIRLN-A-----AD-TIIFLDIPRTICLYRAFKRR 100 (167)
T ss_pred -CCCEEEeCCcchH--HHHHHH-h-----CC-EEEEEeCCHHHHHHHHHHHH
Confidence 3468999975532 122122 1 22 35778899999999888884
No 87
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.18 E-value=3.6e-10 Score=77.85 Aligned_cols=39 Identities=23% Similarity=0.442 Sum_probs=33.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCC----ceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHK----SKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~----~~~~~~d~~~ 46 (143)
+|.++|+|||||||+|+.|+..|+..+.. ...++.|.+.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~ 43 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFY 43 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGB
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccc
Confidence 68999999999999999999999987776 4566677654
No 88
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=99.17 E-value=7e-11 Score=92.70 Aligned_cols=115 Identities=13% Similarity=0.167 Sum_probs=68.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.....|+++|+|||||||+++.|++.+++.++|+|.. .+...+ .+..++|...+++.++..+ .+.+.+
T Consensus 4 ~~~~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~-----ie~~~g-~si~eif~~~Ge~~FR~~E---~~~l~~--- 71 (542)
T PRK14021 4 TRRPQAVIIGMMGAGKTRVGKEVAQMMRLPFADADVE-----IEREIG-MSIPSYFEEYGEPAFREVE---ADVVAD--- 71 (542)
T ss_pred CCCccEEEECCCCCCHHHHHHHHHHHhCCCEEEchHH-----HHHHHC-cCHHHHHHHHHHHHHHHHH---HHHHHH---
Confidence 3456899999999999999999999999887755543 333221 1123445444433332222 122222
Q ss_pred HHhcCCeEEEEeC---CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 84 WLKNDGEVAIIDG---TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 84 ~l~~~~~~vi~d~---~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.+...+ .|+.+ ....++.++.+.+ .+++.+ .+|++.+|.+++.+|..
T Consensus 72 ~~~~~~--~VIs~GGG~v~~~~n~~~L~~-~~~~~g---~vv~L~~~~~~l~~Rl~ 121 (542)
T PRK14021 72 MLEDFD--GIFSLGGGAPMTPSTQHALAS-YIAHGG---RVVYLDADPKEAMERAN 121 (542)
T ss_pred HHhcCC--eEEECCCchhCCHHHHHHHHH-HHhcCC---EEEEEECCHHHHHHHHh
Confidence 222222 34433 2355667777766 666554 35677889999999853
No 89
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.17 E-value=4.5e-10 Score=78.13 Aligned_cols=42 Identities=24% Similarity=0.431 Sum_probs=34.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
.++.+|.++|+|||||||+++.|++.++ +.++.+++.|++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~--~~~~~~i~~D~~~~ 45 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELG--DESIAVIPQDSYYK 45 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhC--CCceEEEeCCcccc
Confidence 4678999999999999999999999983 34567778877643
No 90
>PRK08356 hypothetical protein; Provisional
Probab=99.17 E-value=4.4e-10 Score=77.51 Aligned_cols=119 Identities=19% Similarity=0.134 Sum_probs=61.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-c-ccC-----------chhhhhHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-F-RVD-----------NTEGYNIRQL 72 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-~~~-----------~~~~~~~~~~ 72 (143)
.++|+++|+|||||||+|+.|++ ++.. .++.++..+..... .+.++ | ... ...+...+..
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g~~-----~is~~~~~~~~~~~-~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~ 77 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KGFC-----RVSCSDPLIDLLTH-NVSDYSWVPEVPFKGEPTRENLIELGRYLKEK 77 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CCCc-----EEeCCCcccccccc-cccccccccHHHHhhccccccHHHHHHHHHHh
Confidence 46899999999999999999964 4322 34444321111110 01111 1 000 0011111110
Q ss_pred H-HHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 73 S-AREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 73 ~-~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
. ....+..+.+.+.. ...+++|+. ....+.+.+.. . +. .+|++.||.+++.+|...|..
T Consensus 78 yG~~~~~~~~~~~~~~-~~~ividG~-r~~~q~~~l~~-~----~~--~vi~l~~~~~~~~~Rl~~R~~ 137 (195)
T PRK08356 78 YGEDILIRLAVDKKRN-CKNIAIDGV-RSRGEVEAIKR-M----GG--KVIYVEAKPEIRFERLRRRGA 137 (195)
T ss_pred cCcHHHHHHHHHHhcc-CCeEEEcCc-CCHHHHHHHHh-c----CC--EEEEEECCHHHHHHHHHhcCC
Confidence 0 00011122233333 336899988 66666666554 2 22 456778899998888777754
No 91
>PRK03839 putative kinase; Provisional
Probab=99.16 E-value=1.1e-10 Score=79.45 Aligned_cols=30 Identities=27% Similarity=0.450 Sum_probs=26.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
.|+++|+|||||||+|+.|++.++..++++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~ 31 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDL 31 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 589999999999999999999998665533
No 92
>PRK06761 hypothetical protein; Provisional
Probab=99.15 E-value=6.4e-10 Score=80.43 Aligned_cols=126 Identities=13% Similarity=0.098 Sum_probs=71.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh-hhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY-RRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
|++.+|+++|+|||||||+++.|++.+...+++.+.+..++. .+... .+...+..+ +...+.+... .....+.
T Consensus 1 mm~~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~~~~~~~~~~p~d~---~~~~~~~~e--er~~~l~~~~-~f~~~l~ 74 (282)
T PRK06761 1 MMTKLIIIEGLPGFGKSTTAKMLNDILSQNGIEVELYLEGNLDHPADY---DGVACFTKE--EFDRLLSNYP-DFKEVLL 74 (282)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCcCceEEEEEecCCCCCchhh---ccccCCCHH--HHHHHHHhhh-HHHHHHH
Confidence 346799999999999999999999999888888777644332 21111 112223221 1111111100 0011122
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
+.....|..+|+-+......+|+.+.+..+. ...+..++ .+|.+.+.+|...|
T Consensus 75 ~~~~~~g~~~i~~~~~l~~~yr~~~~~~~~~--~~~v~~~h-~~p~e~i~~R~~~r 127 (282)
T PRK06761 75 KNVLKKGDYYLLPYRKIKNEFGDQFSDELFN--DISKNDIY-ELPFDKNTELITDR 127 (282)
T ss_pred HHHHHcCCeEEEEehhhhHHHhhhhhhhhcc--cceeeeee-cCCHHHHHHHHHHH
Confidence 2222346778888888888777776631111 22344455 67777777776555
No 93
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=99.15 E-value=4.9e-10 Score=77.73 Aligned_cols=42 Identities=29% Similarity=0.440 Sum_probs=36.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++.+|.+.|.|||||||+|+.|...|+.. .+.+++.|+|...
T Consensus 7 ~~iiIgIaG~SgSGKTTva~~l~~~~~~~--~~~~I~~D~YYk~ 48 (218)
T COG0572 7 KVIIIGIAGGSGSGKTTVAKELSEQLGVE--KVVVISLDDYYKD 48 (218)
T ss_pred ceEEEEEeCCCCCCHHHHHHHHHHHhCcC--cceEeeccccccc
Confidence 34799999999999999999999999854 6788899988654
No 94
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=99.15 E-value=6.9e-10 Score=76.60 Aligned_cols=108 Identities=23% Similarity=0.289 Sum_probs=64.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCc-hhhhhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDN-TEGYNIRQLSAREAQ 78 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (143)
|.+|+|+|++|+||||.+.+|+.++...+.++.+++.|.+|..... ...+.+++.... .+.. ..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~--------~~~ 72 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPA--------EIA 72 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHH--------HHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhH--------HHH
Confidence 7899999999999999999999998777999999999999877543 122344433211 1111 112
Q ss_pred HHHHHHH-hcCCeEEEEeCCchhH---HHHHHHHHHHHhhc-CCEEEEE
Q psy2713 79 EDATKWL-KNDGEVAIIDGTTATM---EKRKQIHDYFARKM-GFKVLFV 122 (143)
Q Consensus 79 ~~~~~~l-~~~~~~vi~d~~~~~~---~~r~~~~~~~~~~~-~~~~~~v 122 (143)
.+.++.+ .+..+.+++|++...+ +..+.+.+ +.+.. +..+++|
T Consensus 73 ~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~-~~~~~~~~~~~LV 120 (196)
T PF00448_consen 73 REALEKFRKKGYDLVLIDTAGRSPRDEELLEELKK-LLEALNPDEVHLV 120 (196)
T ss_dssp HHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHH-HHHHHSSSEEEEE
T ss_pred HHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHH-HhhhcCCccceEE
Confidence 2333333 3345789999986433 33344444 44332 4455433
No 95
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=99.15 E-value=1.1e-10 Score=74.63 Aligned_cols=22 Identities=36% Similarity=0.753 Sum_probs=21.1
Q ss_pred EEEEccCCCChhHHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l 30 (143)
|+++|.|||||||+|+.|++.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999997
No 96
>KOG0780|consensus
Probab=99.14 E-value=3.7e-10 Score=83.74 Aligned_cols=100 Identities=19% Similarity=0.286 Sum_probs=73.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAR 75 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (143)
.-+|.+|+|+|+.||||||.+.++|.++...|+++-+++.|.||...++ .....++|... ..++.. ++.
T Consensus 98 K~kpsVimfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~iP~ygsyte~dpv~----ia~ 173 (483)
T KOG0780|consen 98 KGKPSVIMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKARVPFYGSYTEADPVK----IAS 173 (483)
T ss_pred cCCCcEEEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhCCeeEecccccchHH----HHH
Confidence 3468899999999999999999999999999999999999999998765 23466777632 222222 222
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHH
Q psy2713 76 EAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHD 109 (143)
Q Consensus 76 ~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~ 109 (143)
+.. ..+-+++..++|+|++.........+.+
T Consensus 174 egv---~~fKke~fdvIIvDTSGRh~qe~sLfeE 204 (483)
T KOG0780|consen 174 EGV---DRFKKENFDVIIVDTSGRHKQEASLFEE 204 (483)
T ss_pred HHH---HHHHhcCCcEEEEeCCCchhhhHHHHHH
Confidence 222 2333567788999999987766555554
No 97
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.14 E-value=2.6e-10 Score=78.64 Aligned_cols=123 Identities=14% Similarity=0.101 Sum_probs=66.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-----hhhcCCCCccccCc---------------hhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-----LELYNSHDIFRVDN---------------TEG 66 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-----~~~~~~~~~~~~~~---------------~~~ 66 (143)
.+|.++|++||||||+++.|++.++...+++|.+..+.+.... ....-+.+.+..++ ...
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d~~~ 81 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFNDPEE 81 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCCHHH
Confidence 3799999999999999999999888776666555333322110 00011222222222 111
Q ss_pred hhHHHHHHHH-HHHHHHHHHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 67 YNIRQLSARE-AQEDATKWLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 67 ~~~~~~~~~~-~~~~~~~~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
....+.+... ....+.+.+.. ....+++|.+..... .+.. . ++ .++.+.||.+..++|.++|.
T Consensus 82 ~~~l~~i~hP~i~~~~~~~~~~~~~~~~vv~e~pll~E~---~~~~-~-----~D-~ii~V~a~~e~r~~Rl~~R~ 147 (195)
T PRK14730 82 RRWLENLIHPYVRERFEEELAQLKSNPIVVLVIPLLFEA---KLTD-L-----CS-EIWVVDCSPEQQLQRLIKRD 147 (195)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcCCCCEEEEEeHHhcCc---chHh-C-----CC-EEEEEECCHHHHHHHHHHcC
Confidence 1111111111 11222233321 245788888877643 2333 2 22 24567899999999998885
No 98
>KOG4238|consensus
Probab=99.13 E-value=3.1e-10 Score=83.68 Aligned_cols=121 Identities=18% Similarity=0.170 Sum_probs=91.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
.+.|+++|++|+||||++-.|.++|.+.|+.+..+..|+++...-.. -.|+++..+. . .+.+.++.+.+
T Consensus 50 gctvw~tglsgagkttis~ale~~l~~~gipcy~ldgdnirhgl~kn----lgfs~edree-n------irriaevaklf 118 (627)
T KOG4238|consen 50 GCTVWLTGLSGAGKTTISFALEEYLVSHGIPCYSLDGDNIRHGLNKN----LGFSPEDREE-N------IRRIAEVAKLF 118 (627)
T ss_pred ceeEEeeccCCCCcceeehHHHHHHHhcCCcccccCcchhhhhhhhc----cCCCchhHHH-H------HHHHHHHHHHH
Confidence 46799999999999999999999999999999999999988764321 1254432221 1 22355566666
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
.+.|-+.|........+.|..-.+ +-+..+.+++-|.+.+|.+.|.+|+.+.
T Consensus 119 adaglvcitsfispf~~dr~~ark-ihe~~~l~f~ev~v~a~l~vceqrd~k~ 170 (627)
T KOG4238|consen 119 ADAGLVCITSFISPFAKDRENARK-IHESAGLPFFEVFVDAPLNVCEQRDVKG 170 (627)
T ss_pred hcCCceeeehhcChhhhhhhhhhh-hhcccCCceEEEEecCchhhhhhcChHH
Confidence 777866666666666677777666 7677789998899999999999998775
No 99
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.13 E-value=3.1e-10 Score=77.70 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=29.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+|.++|.|||||||+|+.|++.++ .+.+++.|++..
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~----~~~~i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP----NCCVIHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC----CCeEEccccccC
Confidence 588999999999999999999873 245677776643
No 100
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.10 E-value=1.8e-10 Score=77.68 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=28.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
..|+++|+|||||||+|+.|++.+++.+++.|.+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D~~ 36 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTDQW 36 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEccHH
Confidence 4688899999999999999999998766544433
No 101
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.10 E-value=3.1e-09 Score=72.83 Aligned_cols=28 Identities=14% Similarity=0.258 Sum_probs=24.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.++.+|+|+||||||||||++.|.+.+.
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3578999999999999999999988753
No 102
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.10 E-value=1.2e-09 Score=76.00 Aligned_cols=43 Identities=21% Similarity=0.300 Sum_probs=34.2
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
|-+++..+|.++|++||||||+++.|+..++. ..+.+++.|++
T Consensus 1 ~~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~--~~~~~i~~D~~ 43 (207)
T TIGR00235 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGK--LEIVIISQDNY 43 (207)
T ss_pred CCCCCeEEEEEECCCCCCHHHHHHHHHHHhcc--cCCeEeccccc
Confidence 34566789999999999999999999988764 34556677765
No 103
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.10 E-value=2e-09 Score=71.19 Aligned_cols=110 Identities=21% Similarity=0.229 Sum_probs=62.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc--cccC-chhhhhHHHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI--FRVD-NTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~~~ 83 (143)
++|.+.|+|||||||+|+.|++.++..++ +.+.+.+.+-... +.++ |+.. .+++ . ....++....
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~v-----saG~iFR~~A~e~-gmsl~ef~~~AE~~p-~-----iD~~iD~rq~ 68 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLV-----SAGTIFREMARER-GMSLEEFSRYAEEDP-E-----IDKEIDRRQK 68 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCcee-----eccHHHHHHHHHc-CCCHHHHHHHHhcCc-h-----hhHHHHHHHH
Confidence 47899999999999999999999987655 5555444432211 2221 1110 0000 0 0111222222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+...+ ++|+++ +...|.. + ....+-|++.+|.++-.+|..+|-.
T Consensus 69 e~a~~~-nvVleg------rLA~Wi~---k--~~adlkI~L~Apl~vRa~Ria~REg 113 (179)
T COG1102 69 ELAKEG-NVVLEG------RLAGWIV---R--EYADLKIWLKAPLEVRAERIAKREG 113 (179)
T ss_pred HHHHcC-CeEEhh------hhHHHHh---c--cccceEEEEeCcHHHHHHHHHHhcC
Confidence 222234 455543 3344543 2 3455668889999999888887743
No 104
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=99.10 E-value=1.1e-09 Score=83.18 Aligned_cols=96 Identities=16% Similarity=0.262 Sum_probs=62.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSAREA 77 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~~ 77 (143)
+|.+|+|+|++||||||.+..|+.++...+.++.+++.|.++..... ...+.+++... ..+... +
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~~~~~~~dp~~----i---- 170 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIPFYGSYTESDPVK----I---- 170 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCeEEeecCCCCHHH----H----
Confidence 47899999999999999999999999888889999999998865432 12234444321 111111 1
Q ss_pred HHHHHHHH-hcCCeEEEEeCCchhHHHHHHHH
Q psy2713 78 QEDATKWL-KNDGEVAIIDGTTATMEKRKQIH 108 (143)
Q Consensus 78 ~~~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~ 108 (143)
..+.++.+ ......+|+|+..........+.
T Consensus 171 ~~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~ 202 (429)
T TIGR01425 171 ASEGVEKFKKENFDIIIVDTSGRHKQEDSLFE 202 (429)
T ss_pred HHHHHHHHHhCCCCEEEEECCCCCcchHHHHH
Confidence 11122233 23567899999976654333333
No 105
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=99.09 E-value=7.7e-10 Score=81.40 Aligned_cols=33 Identities=27% Similarity=0.278 Sum_probs=28.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
.++..|+++|+|||||||+++.|++.+++.+++
T Consensus 131 ~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id 163 (309)
T PRK08154 131 ARRRRIALIGLRGAGKSTLGRMLAARLGVPFVE 163 (309)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEe
Confidence 345789999999999999999999999876653
No 106
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=99.09 E-value=2.2e-09 Score=72.87 Aligned_cols=26 Identities=23% Similarity=0.232 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+++++|+|||||||+++.|+..++.
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 47899999999999999999988754
No 107
>PRK13975 thymidylate kinase; Provisional
Probab=99.08 E-value=3.4e-09 Score=72.86 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.+|++.|++||||||+++.|+++++.
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~ 28 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNA 28 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 479999999999999999999999974
No 108
>PRK05439 pantothenate kinase; Provisional
Probab=99.07 E-value=1.9e-09 Score=79.05 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=37.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~~ 47 (143)
..|.+|.++|+|||||||+|+.|+..+.. .+.++.+++.|+|..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~ 129 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLY 129 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEecccccc
Confidence 45789999999999999999999998864 356788999998753
No 109
>PRK04182 cytidylate kinase; Provisional
Probab=99.06 E-value=7.1e-10 Score=75.04 Aligned_cols=30 Identities=27% Similarity=0.476 Sum_probs=26.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
++|+++|+|||||||+|+.|++.++...++
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 379999999999999999999998765543
No 110
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.06 E-value=1.4e-09 Score=75.39 Aligned_cols=130 Identities=13% Similarity=0.119 Sum_probs=69.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh----hhhhcCCCCccccCchhhhhHHHH------
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK----HLELYNSHDIFRVDNTEGYNIRQL------ 72 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~------ 72 (143)
...|+.|.++|.+||||||+++.|++.++...+++|.+..+-+... ......+.++++...-+...+...
T Consensus 3 ~~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~~g~idR~~L~~~vF~d~~ 82 (204)
T PRK14733 3 FINTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREITKKPSVIKKIAEKFGDEIVMNKQINRAMLRAIITESKE 82 (204)
T ss_pred CCceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHHCchHHHHHHHHHhCHHhccCCCcCHHHHHHHHhCCHH
Confidence 3457899999999999999999999887766666665544433221 011112233332111111111111
Q ss_pred -------HHHH-HHHHHHHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 73 -------SARE-AQEDATKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 73 -------~~~~-~~~~~~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+... ....+.+.+.. ....+++|.+-..+.... +.. . ++. ++.+.||.+.-++|-++|..
T Consensus 83 ~~~~Le~i~HP~V~~~~~~~~~~~~~~~vv~eipLL~E~~~~-~~~-~-----~D~-vi~V~a~~e~ri~Rl~~Rd~ 151 (204)
T PRK14733 83 AKKWLEDYLHPVINKEIKKQVKESDTVMTIVDIPLLGPYNFR-HYD-Y-----LKK-VIVIKADLETRIRRLMERDG 151 (204)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCCeEEEEechhhhccCc-hhh-h-----CCE-EEEEECCHHHHHHHHHHcCC
Confidence 1111 11222233322 235788888776543110 111 1 222 46678999999999988854
No 111
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.03 E-value=2.6e-10 Score=78.59 Aligned_cols=119 Identities=15% Similarity=0.175 Sum_probs=64.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----------hcCCCCccccCch-hhhhHH----
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----------LYNSHDIFRVDNT-EGYNIR---- 70 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~~-~~~~~~---- 70 (143)
+.+|.++|++||||||+++.|++ ++... +++|.+.+..+. ...+.+.+..++. +...+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~-----i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf 75 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPV-----IDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVF 75 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEE-----EEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHh
Confidence 36899999999999999999988 66544 445544333221 0112222321110 111111
Q ss_pred ---------HHHHHH-HHHHHHHHHhcC--CeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 71 ---------QLSARE-AQEDATKWLKND--GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 71 ---------~~~~~~-~~~~~~~~l~~~--~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
+.+..- ....+.+.+... ...+|+|.+..... .+.. . ++ .++.+.||.++..+|-.+|
T Consensus 76 ~~~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vv~e~pll~e~---~~~~-~-----~D-~vi~V~a~~e~~~~Rl~~R 145 (194)
T PRK00081 76 SDPEARKKLEAILHPLIREEILEQLQEAESSPYVVLDIPLLFEN---GLEK-L-----VD-RVLVVDAPPETQLERLMAR 145 (194)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHcccCCEEEEEehHhhcC---Cchh-h-----CC-eEEEEECCHHHHHHHHHHc
Confidence 111111 112222333221 25788998877653 2333 2 22 3566789999999998887
Q ss_pred hc
Q psy2713 139 SM 140 (143)
Q Consensus 139 ~~ 140 (143)
..
T Consensus 146 ~~ 147 (194)
T PRK00081 146 DG 147 (194)
T ss_pred CC
Confidence 53
No 112
>KOG4622|consensus
Probab=99.03 E-value=3.1e-09 Score=72.46 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=77.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH---HccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHH---HHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY---LTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQL---SAREAQED 80 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~---l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 80 (143)
.++.+.|+|++||||+++.|.-. +...++ .-.+-|+++...-. ..+. .....+.. ....++..
T Consensus 2 ~LlaliGiPAaGKSs~c~~ilga~aaLrvrhi--~hlcfDDFlmdaTp---SaD~------a~keqRgr~~~~iEk~ISa 70 (291)
T KOG4622|consen 2 ALLALIGIPAAGKSSFCRKILGAHAALRVRHI--EHLCFDDFLMDATP---SADK------AAKEQRGRFECHIEKCISA 70 (291)
T ss_pred ceeeeecCcccchhHHHHHHHHHHHHHHHHHH--HhhhHHHHhhhcCc---chhh------hHHHHhchHHHHHHHHHHH
Confidence 47899999999999999998732 222222 22344555432111 0000 00000111 11222221
Q ss_pred HH----------H-----HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 81 AT----------K-----WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 81 ~~----------~-----~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.- . -.+++...+++|..++.+++|-.+++ +++.+|+.+-.|++-....+++++|.+|.
T Consensus 71 iqedtdwppqvrrisssgdynsgrhiilcdD~FY~kSMR~k~~k-i~kd~GciFG~Iflas~ide~LqaNS~Rs 143 (291)
T KOG4622|consen 71 IQEDTDWPPQVRRISSSGDYNSGRHIILCDDIFYLKSMRHKFQK-IAKDHGCIFGIIFLASGIDEALQANSHRS 143 (291)
T ss_pred HhcccCCCchheeccccCCcCCCceEEEechHHHHHHhhhHHHH-HHHHcCCeeeeeehhhhHHHHHHhccccc
Confidence 11 0 01344567889999999999999999 99999999988999999999999999885
No 113
>PLN02924 thymidylate kinase
Probab=99.03 E-value=1.3e-08 Score=71.52 Aligned_cols=121 Identities=15% Similarity=0.134 Sum_probs=67.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh----h---hhhhhhhcCCCCccccCchhhhhHHHHHHHH-
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSARE- 76 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (143)
+..+|+|.|.+||||||+++.|++++...++++..+.... + .+..... ... .+ ..... ...+..
T Consensus 15 ~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~~--~~~-~~---~~~~~--llf~adR 86 (220)
T PLN02924 15 RGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLSN--KSQ-LD---DRAIH--LLFSANR 86 (220)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHhC--CCC-CC---HHHHH--HHHHHHH
Confidence 4579999999999999999999999998888776554321 1 1111110 000 11 11110 001111
Q ss_pred --HHHHHHHHHhcCCeEEEEeCCchhHH--------HHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 77 --AQEDATKWLKNDGEVAIIDGTTATME--------KRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 77 --~~~~~~~~l~~~~~~vi~d~~~~~~~--------~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
....+...+ ..|.+||.|-.....- ..+++.. +......+-+++.+.+|.+++++|.
T Consensus 87 ~~~~~~I~pal-~~g~vVI~DRy~~S~~ayq~~~g~~~~~~~~-~~~~~~~PDlvi~Ld~~~~~a~~R~ 153 (220)
T PLN02924 87 WEKRSLMERKL-KSGTTLVVDRYSYSGVAFSAAKGLDLEWCKA-PEVGLPAPDLVLYLDISPEEAAERG 153 (220)
T ss_pred HHHHHHHHHHH-HCCCEEEEccchhHHHHHHHhcCCCHHHHHH-HHhCCCCCCEEEEEeCCHHHHHHHh
Confidence 112222233 3578899987654221 1122332 3322334667888899999999884
No 114
>PRK10867 signal recognition particle protein; Provisional
Probab=99.03 E-value=2.3e-09 Score=81.80 Aligned_cols=89 Identities=25% Similarity=0.332 Sum_probs=59.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhhhhhhh------hhcCCCCccccC-chhhhhHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAYRRKHL------ELYNSHDIFRVD-NTEGYNIRQLSAR 75 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~~ 75 (143)
.+|.+|+++|++||||||++..|+.++... +.++.+++.|.++.... ....+.+++... ..+..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~~~~~~~dp~-------- 169 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVFPSGDGQDPV-------- 169 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchHHHHHHHHHHhhcCCeEEecCCCCCHH--------
Confidence 457899999999999999999999988777 88999999999887643 223345555321 11111
Q ss_pred HHHHHHHHHH-hcCCeEEEEeCCchh
Q psy2713 76 EAQEDATKWL-KNDGEVAIIDGTTAT 100 (143)
Q Consensus 76 ~~~~~~~~~l-~~~~~~vi~d~~~~~ 100 (143)
....++.+.. ......+|+|+....
T Consensus 170 ~i~~~a~~~a~~~~~DvVIIDTaGrl 195 (433)
T PRK10867 170 DIAKAALEEAKENGYDVVIVDTAGRL 195 (433)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCCc
Confidence 1112233333 234568999998754
No 115
>PLN02199 shikimate kinase
Probab=99.02 E-value=2.8e-09 Score=77.28 Aligned_cols=113 Identities=15% Similarity=0.170 Sum_probs=61.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
...|+|+|++||||||+++.|++.+++..+++|.+ .+.........++|...+.+.+...+ .+.+. .+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~l-----Ie~~~~G~sI~eIf~~~GE~~FR~~E---~e~L~----~L 169 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTL-----IEQAMNGTSVAEIFVHHGENFFRGKE---TDALK----KL 169 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHH-----HHHHhcCCCHHHHHHHhCHHHHHHHH---HHHHH----HH
Confidence 45799999999999999999999998776655543 33321111122334433333222111 12222 22
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.... .+|+.+-.......+.| . +++ .| ++|++.+|.+++.+|...
T Consensus 170 ~~~~-~~VIStGGG~V~~~~n~-~-~L~-~G---~vV~Ldas~E~l~~RL~~ 214 (303)
T PLN02199 170 SSRY-QVVVSTGGGAVIRPINW-K-YMH-KG---ISIWLDVPLEALAHRIAA 214 (303)
T ss_pred HhcC-CEEEECCCcccCCHHHH-H-HHh-CC---eEEEEECCHHHHHHHHhh
Confidence 2222 34444433222222222 2 333 23 357788999999998764
No 116
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.01 E-value=2e-09 Score=73.30 Aligned_cols=32 Identities=22% Similarity=0.279 Sum_probs=24.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
+|.++|.|||||||+++.|++ ++...+++|.+
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~ 32 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKI 32 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHH
Confidence 489999999999999999998 55544433333
No 117
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.01 E-value=2.2e-09 Score=72.13 Aligned_cols=110 Identities=16% Similarity=0.164 Sum_probs=59.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc--cc-cCchhhhhHHHHHHHHHHHH-HH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI--FR-VDNTEGYNIRQLSAREAQED-AT 82 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~~-~~ 82 (143)
++|+++|.|||||||+|+.|++.++... ++.|++........ +.+. +. ...... .+ ...+.. +.
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~-----~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~-~~-----~~~~~~~i~ 68 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKL-----ISAGDIFRELAAKM-GLDLIEFLNYAEENP-EI-----DKKIDRRIH 68 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCce-----ecHHHHHHHHHHHc-CCCHHHHHHHHhcCc-HH-----HHHHHHHHH
Confidence 3799999999999999999999987554 45544333322110 1111 00 000000 00 111222 12
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+.... +..+|+|+..... .++. ... +.|.+.||.+...+|..+|..
T Consensus 69 ~~~~~-~~~~Vi~g~~~~~---------~~~~-~~d-~~v~v~a~~~~r~~R~~~R~~ 114 (171)
T TIGR02173 69 EIALK-EKNVVLESRLAGW---------IVRE-YAD-VKIWLKAPLEVRARRIAKREG 114 (171)
T ss_pred HHHhc-CCCEEEEecccce---------eecC-CcC-EEEEEECCHHHHHHHHHHccC
Confidence 22223 3467778765421 1111 122 457788999999999888753
No 118
>COG3896 Chloramphenicol 3-O-phosphotransferase [Defense mechanisms]
Probab=99.01 E-value=1.2e-08 Score=67.30 Aligned_cols=130 Identities=17% Similarity=0.108 Sum_probs=77.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-CCCcccc------CchhhhhHH-HHH---
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-SHDIFRV------DNTEGYNIR-QLS--- 73 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-~~~~~~~------~~~~~~~~~-~~~--- 73 (143)
+..+|++.|.|.||||++|..+......+..+ +..|.|.+....... ....|.. ++.+..-+. ..+
T Consensus 22 ~griVlLNG~~saGKSSiA~A~Q~~~a~pwmh---igiD~f~e~lpp~~~d~a~g~~~~~~v~~dg~~~v~v~~gpi~e~ 98 (205)
T COG3896 22 EGRIVLLNGGSSAGKSSIALAFQDLAAEPWMH---IGIDLFWEALPPEQLDLARGYTWDSAVEADGLEWVTVHPGPILEL 98 (205)
T ss_pred CceEEEecCCCccchhHHHHHHHHHhhcchhh---hhHHHHHHhCCHHhhccccccccccccccCCceeeEeechhHHHH
Confidence 45799999999999999999999876433221 133444444322111 1111221 111111110 011
Q ss_pred HHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 74 AREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 74 ~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+......++....+.|.++|.|+..-+++..-.-.. .+. ++++.+|-+.||+|+..+|...|.-
T Consensus 99 ~~~~~r~ai~a~ad~G~~~i~Ddv~~~r~~L~Dc~r-~l~--g~~v~~VGV~~p~E~~~~Re~rr~d 162 (205)
T COG3896 99 AMHSRRRAIRAYADNGMNVIADDVIWTREWLVDCLR-VLE--GCRVWMVGVHVPDEEGARRELRRGD 162 (205)
T ss_pred HHHHHHHHHHHHhccCcceeehhcccchhhHHHHHH-HHh--CCceEEEEeeccHHHHHHHHhhcCC
Confidence 112223344444566889999998776554444444 443 7999999999999999999887653
No 119
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.01 E-value=2.9e-09 Score=74.77 Aligned_cols=39 Identities=18% Similarity=0.343 Sum_probs=32.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~ 46 (143)
+|.+.|++||||||+|+.|+..+.. .+.++.+++.|++.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~ 41 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFL 41 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCccc
Confidence 5789999999999999999998863 34567788888774
No 120
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=99.01 E-value=1.4e-08 Score=73.93 Aligned_cols=97 Identities=18% Similarity=0.204 Sum_probs=59.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
+++..+|+++|++||||||+++.|... +. ...|+. .. ..+.++.
T Consensus 3 ~~~~~~i~i~G~~GsGKtt~~~~l~~~-g~-------~~~d~~-------------------~~---------~L~~~l~ 46 (288)
T PRK05416 3 AAPMRLVIVTGLSGAGKSVALRALEDL-GY-------YCVDNL-------------------PP---------SLLPKLV 46 (288)
T ss_pred CCCceEEEEECCCCCcHHHHHHHHHHc-CC-------eEECCc-------------------CH---------HHHHHHH
Confidence 344579999999999999999999522 21 111111 00 0011222
Q ss_pred HHHh----cCCeEEEEeCCchh--HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 83 KWLK----NDGEVAIIDGTTAT--MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 83 ~~l~----~~~~~vi~d~~~~~--~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
+.+. .....+++|..+.. .+.++.+. .++..+..+.+|++.++.+++.+|-..
T Consensus 47 ~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~--~L~~~g~~~~iI~L~a~~e~L~~Rl~~ 105 (288)
T PRK05416 47 ELLAQSGGIRKVAVVIDVRSRPFFDDLPEALD--ELRERGIDVRVLFLDASDEVLIRRYSE 105 (288)
T ss_pred HHHHhcCCCCCeEEEEccCchhhHHHHHHHHH--HHHHcCCcEEEEEEECCHHHHHHHHhh
Confidence 2221 12446788887542 23444444 444458888889999999999999654
No 121
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.99 E-value=3.7e-09 Score=80.86 Aligned_cols=90 Identities=24% Similarity=0.353 Sum_probs=60.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccC-chhhhhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVD-NTEGYNIRQLSARE 76 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~-~~~~~~~~~~~~~~ 76 (143)
.+|.+|+|+|++||||||++..|+.++...+.++.++..|.++..... ...+.+++... ..+. ..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~--------~~ 164 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDA--------VE 164 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCH--------HH
Confidence 358899999999999999999999999888889999999988775322 22234444321 1111 11
Q ss_pred HHHHHHHHHhcCCeEEEEeCCchhHH
Q psy2713 77 AQEDATKWLKNDGEVAIIDGTTATME 102 (143)
Q Consensus 77 ~~~~~~~~l~~~~~~vi~d~~~~~~~ 102 (143)
.+.++++.+.. ...+|+|+......
T Consensus 165 i~~~al~~~~~-~DvVIIDTAGr~~~ 189 (437)
T PRK00771 165 IAKEGLEKFKK-ADVIIVDTAGRHAL 189 (437)
T ss_pred HHHHHHHHhhc-CCEEEEECCCcccc
Confidence 12333334433 37899999975553
No 122
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.99 E-value=1.5e-08 Score=70.14 Aligned_cols=27 Identities=26% Similarity=0.335 Sum_probs=24.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..+|+++|+|||||||+++.|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 457999999999999999999998864
No 123
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=98.99 E-value=1.8e-09 Score=73.99 Aligned_cols=33 Identities=18% Similarity=0.280 Sum_probs=26.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
+|.++|.+||||||+++.|++..+...+++|.+
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~ 33 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKI 33 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHH
Confidence 488999999999999999998855554444444
No 124
>PLN02842 nucleotide kinase
Probab=98.97 E-value=9.3e-10 Score=84.95 Aligned_cols=118 Identities=11% Similarity=0.144 Sum_probs=62.0
Q ss_pred EEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 10 ALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 10 ~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.|+|||||||+|+.|+++++..+++ .++..+....... ..++.+.. ...........+.+.++.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs-----~gdLLR~ev~~~T~iG~~Ire~l~~G----~lvPdeiv~~ll~drl~~ 71 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHIS-----TGDLLRAEVSAGTDIGKRAKEFMNSG----RLVPDEIVIAMVTGRLSR 71 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEE-----ccHHHHHHhccCCHHHHHHHHHHhCC----CCCcHHHHHHHHHHHHhC
Confidence 478999999999999999999766553 3333222111000 00001000 000111111111111111
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.......+|+|+.+.+..+.+.+.+ . ...+-++|.+.||++.+++|-..|..
T Consensus 72 ~~~~~~G~ILDGfPRt~~Qa~~Le~-~---~~~PDlVI~LDvpdevlleRl~gR~~ 123 (505)
T PLN02842 72 EDAKEKGWLLDGYPRSFAQAQSLEK-L---KIRPDIFILLDVPDEILIDRCVGRRL 123 (505)
T ss_pred ccccCCcEEEeCCCCcHHHHHHHHh-c---CCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 1111234888998877655443333 1 12344678889999999999777753
No 125
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.97 E-value=1.9e-09 Score=70.59 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=29.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+|+++|+|||||||+|+.|++.++..+++.+.+.
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~~~~~i~ 34 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYLDTGGIR 34 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCceeccccCC
Confidence 5899999999999999999999988777666443
No 126
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=98.97 E-value=1.4e-08 Score=71.70 Aligned_cols=43 Identities=21% Similarity=0.363 Sum_probs=34.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee-Eehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV-FSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~-~~~d~~~ 46 (143)
.++.+|.+.|++||||||+++.|+..+...+....+ ++.|++.
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~ 74 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFH 74 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEeccccc
Confidence 467899999999999999999999998766555555 6666643
No 127
>PLN02348 phosphoribulokinase
Probab=98.96 E-value=9.7e-09 Score=77.09 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=35.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCC---------------CCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD---------------HKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~---------------~~~~~~~~d~~~ 46 (143)
..|.+|.+.|.|||||||+|+.|+..|+..+ ..+.+++.|+|.
T Consensus 47 ~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh 104 (395)
T PLN02348 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYH 104 (395)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEccccc
Confidence 4578999999999999999999999997532 345688999874
No 128
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.95 E-value=2.9e-08 Score=75.82 Aligned_cols=89 Identities=26% Similarity=0.355 Sum_probs=58.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhh------hcCCCCccccCc-hhhhhHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDN-TEGYNIRQLSAR 75 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~-~~~~~~~~~~~~ 75 (143)
.+|.+++++|++||||||++..|+.++. ..+.++.+++.|.+|..... ...+.+++.... ....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~-------- 168 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFALGKGQSPV-------- 168 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccchHHHHHHHHHHHhcCCceEecCCCCCHH--------
Confidence 3578999999999999999999999875 46888999999988775321 223445443221 1111
Q ss_pred HHHHHHHHHH-hcCCeEEEEeCCchh
Q psy2713 76 EAQEDATKWL-KNDGEVAIIDGTTAT 100 (143)
Q Consensus 76 ~~~~~~~~~l-~~~~~~vi~d~~~~~ 100 (143)
....++.+.+ ......+|+|+....
T Consensus 169 ~i~~~al~~~~~~~~DvVIIDTaGr~ 194 (428)
T TIGR00959 169 EIARRALEYAKENGFDVVIVDTAGRL 194 (428)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 1122333333 334568999998754
No 129
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.92 E-value=4.4e-08 Score=68.13 Aligned_cols=27 Identities=22% Similarity=0.410 Sum_probs=23.8
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.++.+|+++|+|||||||+++.|.+.
T Consensus 10 ~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 10 PAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 456789999999999999999999764
No 130
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.92 E-value=3.2e-08 Score=67.12 Aligned_cols=26 Identities=23% Similarity=0.280 Sum_probs=23.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+|+|+|++||||||+++.|++.++.
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 58999999999999999999987644
No 131
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.91 E-value=2.8e-08 Score=65.68 Aligned_cols=119 Identities=16% Similarity=0.094 Sum_probs=75.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+|.+.++.|+.||||||+...+.-.+.- ...+++.|..-... ++.++.... -..++.+.. ....
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~---~~~~VN~D~iA~~i----------~p~~p~~~~--i~A~r~ai~-~i~~ 64 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLP---GIVFVNADEIAAQI----------SPDNPTSAA--IQAARVAID-RIAR 64 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcC---CeEEECHHHHhhhc----------CCCCchHHH--HHHHHHHHH-HHHH
Confidence 4678999999999999998776544421 23556777654332 111111111 111222222 2233
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH-HHHHhhhhhcc
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE-ILEHNIKQSMC 141 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~r~~~r~~~ 141 (143)
+-+.+..+..+++.+.++.++.+. .++..||-+.+.++..+..+ -.+|-.+|...
T Consensus 65 ~I~~~~~F~~ETtLS~~s~~~~ik--~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~ 120 (187)
T COG4185 65 LIDLGRPFIAETTLSGPSILELIK--TAKAAGFYIVLNYIVIDSVELAVERVKLRVAK 120 (187)
T ss_pred HHHcCCCcceEEeeccchHHHHHH--HHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhc
Confidence 334578899999999998777666 68888999988888888775 45666666543
No 132
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.90 E-value=7.5e-09 Score=71.38 Aligned_cols=38 Identities=24% Similarity=0.439 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+|.++|++||||||+++.|+..+ .+..+.+++.|++..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEeccccc
Confidence 58899999999999999999987 344567888887653
No 133
>PRK13974 thymidylate kinase; Provisional
Probab=98.90 E-value=9.5e-08 Score=66.73 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
...+|+|.|++||||||+++.|++++...+
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~~~g 31 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLPSSG 31 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 457999999999999999999999987554
No 134
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.90 E-value=1.6e-09 Score=72.36 Aligned_cols=104 Identities=16% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhcCCeEEEE
Q psy2713 15 PARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAII 94 (143)
Q Consensus 15 pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~vi~ 94 (143)
|||||||+++.||+.|++.++|. |.+.....+. ...++|...+.+.+...+ ...+.+.+... ..|+
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~-----D~~i~~~~g~-si~~i~~~~G~~~fr~~E------~~~l~~l~~~~--~~VI 66 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDL-----DDEIEERTGM-SISEIFAEEGEEAFRELE------SEALRELLKEN--NCVI 66 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEH-----HHHHHHHHTS-HHHHHHHHHHHHHHHHHH------HHHHHHHHCSS--SEEE
T ss_pred CCCcHHHHHHHHHHHhCCCcccc-----CHHHHHHhCC-cHHHHHHcCChHHHHHHH------HHHHHHHhccC--cEEE
Confidence 79999999999999999876644 4443332220 112333322222221111 11122222322 4444
Q ss_pred eC---CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 95 DG---TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 95 d~---~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+ +...++.++.+.+ . .. +|++.++.+++.+|...+..
T Consensus 67 a~GGG~~~~~~~~~~L~~-----~-g~--vI~L~~~~~~l~~Rl~~~~~ 107 (158)
T PF01202_consen 67 ACGGGIVLKEENRELLKE-----N-GL--VIYLDADPEELAERLRARDN 107 (158)
T ss_dssp EE-TTGGGSHHHHHHHHH-----H-SE--EEEEE--HHHHHHHHHHHCT
T ss_pred eCCCCCcCcHHHHHHHHh-----C-CE--EEEEeCCHHHHHHHHhCCCC
Confidence 44 4555555554443 2 32 45667899999998766543
No 135
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.90 E-value=2.4e-08 Score=72.27 Aligned_cols=45 Identities=24% Similarity=0.296 Sum_probs=39.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.++.+|+++|++|+||||.+..|+..+...+.++.++..|.++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~~ 114 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRAA 114 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCHH
Confidence 346899999999999999999999998877888889998876554
No 136
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.88 E-value=2.1e-08 Score=74.01 Aligned_cols=43 Identities=26% Similarity=0.363 Sum_probs=38.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++.+|+++|++||||||++..|+..+...+.++.++..|.++.
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~ 155 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRA 155 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccch
Confidence 5789999999999999999999999887778888888887664
No 137
>PRK14974 cell division protein FtsY; Provisional
Probab=98.88 E-value=7e-08 Score=71.66 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=38.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
+|.+|+|+|+|||||||.+..|+..+...+.++.++..|.+|...
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a 183 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGA 183 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHH
Confidence 478999999999999999999999887777888888888776543
No 138
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.88 E-value=6.9e-08 Score=66.25 Aligned_cols=25 Identities=32% Similarity=0.497 Sum_probs=22.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+|++.|++||||||+++.|+++++.
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~ 25 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGY 25 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999998653
No 139
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.86 E-value=1.3e-09 Score=84.55 Aligned_cols=108 Identities=18% Similarity=0.248 Sum_probs=58.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHhc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLKN 87 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 87 (143)
.|+++|+|||||||+++.|++.+++.++ +.|.+.....+ ....++|...+++.+. ....+.+.++. .
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~i-----d~D~~i~~~~g-~~i~~i~~~~Ge~~fr---~~E~~~l~~l~---~- 68 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFI-----DMDEEIERREG-RSVRRIFEEDGEEYFR---LKEKELLRELV---E- 68 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEE-----ECcHHHHHHcC-CCHHHHHHHhhhHHHH---HHHHHHHHHHh---h-
Confidence 5899999999999999999999877655 44544444221 0112223322222221 11122333322 1
Q ss_pred CCeEEEEeCC---chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 88 DGEVAIIDGT---TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 88 ~~~~vi~d~~---~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
... .|+.+- ..+.+.|+.+. + + .+|++.+|.+++.+|-..+
T Consensus 69 ~~~-~Vis~Gggvv~~~~~r~~l~-----~-~---~vI~L~as~e~l~~Rl~~~ 112 (488)
T PRK13951 69 RDN-VVVATGGGVVIDPENRELLK-----K-E---KTLFLYAPPEVLMERVTTE 112 (488)
T ss_pred cCC-EEEECCCccccChHHHHHHh-----c-C---eEEEEECCHHHHHHHhccC
Confidence 122 333332 12334444332 2 1 2577889999999887543
No 140
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.86 E-value=4.5e-08 Score=69.13 Aligned_cols=127 Identities=24% Similarity=0.251 Sum_probs=67.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh---hhhc----------CCCCccccCchhhhhHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH---LELY----------NSHDIFRVDNTEGYNIR 70 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~---~~~~----------~~~~~~~~~~~~~~~~~ 70 (143)
+.|.+|++.|.||+||||+|..||.+|+-. .+++.|..|+.+ +.+. ..+..+.....+...+.
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~----~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piia 162 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIR----SVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIA 162 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCc----eeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhh
Confidence 348999999999999999999999998753 345666655543 1110 00111111111110111
Q ss_pred H-----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHH-HHhhhhhc
Q psy2713 71 Q-----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEIL-EHNIKQSM 140 (143)
Q Consensus 71 ~-----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~r~~~r~~ 140 (143)
. ......++.+++..-..|..+|+.+.-.-+..-+. ... +..+....+.+++++++ .|-..|.+
T Consensus 163 GF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~----~~~--~~n~~~~~l~i~dee~Hr~RF~~R~~ 232 (299)
T COG2074 163 GFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKE----EAL--GNNVFMFMLYIADEELHRERFYDRIR 232 (299)
T ss_pred hHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccH----hhh--ccceEEEEEEeCCHHHHHHHHHHHHH
Confidence 1 11223455555555445889999998776653221 211 12222333445666654 45555543
No 141
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=98.85 E-value=2.2e-07 Score=62.72 Aligned_cols=42 Identities=38% Similarity=0.506 Sum_probs=36.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++++++|+|||||||++..++..+...+.++.+++.|.++..
T Consensus 1 ~~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~~~ 42 (173)
T cd03115 1 TVILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPA 42 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCChH
Confidence 478999999999999999999988777888888888876544
No 142
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=98.85 E-value=1.2e-07 Score=62.99 Aligned_cols=78 Identities=21% Similarity=0.273 Sum_probs=53.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH-
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL- 85 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 85 (143)
+|+=++.+||||||+|.+|++.++ |.++..|-+.. . .. .+.+..+++.|
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHvQnDnI~~------------------k--~~---------~~f~~~~l~~L~ 51 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHVQNDNITG------------------K--RK---------PKFIKAVLELLA 51 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCccccCCCCC------------------C--CH---------HHHHHHHHHHHh
Confidence 355678999999999999999998 77664443311 0 00 11123333444
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhc
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKM 115 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~ 115 (143)
.....+||.|=.|.....|+++.+ .++..
T Consensus 52 ~~~~~vViaDRNNh~~reR~ql~~-~~~~~ 80 (168)
T PF08303_consen 52 KDTHPVVIADRNNHQKRERKQLFE-DVSQL 80 (168)
T ss_pred hCCCCEEEEeCCCchHHHHHHHHH-HHHHh
Confidence 344678999999999999999888 77764
No 143
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=98.84 E-value=1.3e-08 Score=70.87 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.+.+|.++|.+||||||+++.|.. ++...+++|
T Consensus 4 ~~~~igitG~igsGKSt~~~~l~~-~g~~v~d~D 36 (208)
T PRK14731 4 LPFLVGVTGGIGSGKSTVCRFLAE-MGCELFEAD 36 (208)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH-CCCeEEecc
Confidence 457899999999999999999986 454434443
No 144
>PLN02422 dephospho-CoA kinase
Probab=98.83 E-value=2.4e-08 Score=70.47 Aligned_cols=118 Identities=18% Similarity=0.121 Sum_probs=63.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCch-hhhhHHHH---
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDNT-EGYNIRQL--- 72 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~--- 72 (143)
.+|.++|.+||||||+++.|++ ++... ++.|...+..+.+ ..+.++++.++. +...++..
T Consensus 2 ~~igltG~igsGKstv~~~l~~-~g~~~-----idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~ 75 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFKS-SGIPV-----VDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFS 75 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeE-----EehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhC
Confidence 3799999999999999999984 45544 4555544333221 112333322211 11111111
Q ss_pred ----------HHHHHH-HHHHHHH----hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 73 ----------SAREAQ-EDATKWL----KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 73 ----------~~~~~~-~~~~~~l----~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
+....+ ..+.... ..+...+|+|.+-.... .+.. . ++. ++.+.||.++.++|-++
T Consensus 76 d~~~~~~Le~IlHP~V~~~~~~~~~~~~~~~~~~vv~eipLL~E~---~~~~-~-----~D~-vI~V~a~~e~ri~RL~~ 145 (232)
T PLN02422 76 DPSKRQLLNRLLAPYISSGIFWEILKLWLKGCKVIVLDIPLLFET---KMDK-W-----TKP-VVVVWVDPETQLERLMA 145 (232)
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHHHHhcCCCEEEEEehhhhhc---chhh-h-----CCE-EEEEECCHHHHHHHHHH
Confidence 110111 1111111 12235788888877543 2332 2 333 46678999999999888
Q ss_pred hhc
Q psy2713 138 QSM 140 (143)
Q Consensus 138 r~~ 140 (143)
|..
T Consensus 146 R~g 148 (232)
T PLN02422 146 RDG 148 (232)
T ss_pred cCC
Confidence 854
No 145
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=98.82 E-value=2.9e-08 Score=68.68 Aligned_cols=38 Identities=26% Similarity=0.414 Sum_probs=29.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++.+|.++|.+||||||+|+.+++ ++.. ++++|..-+.
T Consensus 1 ~~~iIglTG~igsGKStva~~~~~-~G~~-----vidaD~v~r~ 38 (201)
T COG0237 1 MMLIIGLTGGIGSGKSTVAKILAE-LGFP-----VIDADDVARE 38 (201)
T ss_pred CceEEEEecCCCCCHHHHHHHHHH-cCCe-----EEEccHHHHH
Confidence 357999999999999999999998 6654 4555655443
No 146
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=98.81 E-value=1.4e-08 Score=70.07 Aligned_cols=117 Identities=15% Similarity=0.152 Sum_probs=61.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCch-hhhhHHHH----
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDNT-EGYNIRQL---- 72 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~---- 72 (143)
+|.++|.+||||||+++.|++ ++. .+++.|..-+..+.+ ..+.++++.++. +...++..
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~-----~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~ 74 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGA-----FGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFND 74 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCC-----EEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCC
Confidence 478999999999999998875 343 445555544333221 112333332221 11111111
Q ss_pred ---------HHHHHH-HHHHHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 73 ---------SAREAQ-EDATKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 73 ---------~~~~~~-~~~~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+....+ ..+.+.+. ..+..+|+|.+...... +.. . ++ .++.+.||.++.++|-.+|..
T Consensus 75 ~~~~~~L~~i~hP~v~~~~~~~~~~~~~~~~vi~e~pLL~E~~---~~~-~-----~D-~vi~V~a~~e~r~~RL~~R~g 144 (196)
T PRK14732 75 EEKLKALNELIHPLVRKDFQKILQTTAEGKLVIWEVPLLFETD---AYT-L-----CD-ATVTVDSDPEESILRTISRDG 144 (196)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHhcCCcEEEEeeeeeEcC---chh-h-----CC-EEEEEECCHHHHHHHHHHcCC
Confidence 111111 11222221 12456778887765532 222 2 22 356678999999999888843
No 147
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.80 E-value=4.6e-08 Score=71.63 Aligned_cols=90 Identities=20% Similarity=0.245 Sum_probs=63.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccc-cCchhhhhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFR-VDNTEGYNIRQLSARE 76 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~-~~~~~~~~~~~~~~~~ 76 (143)
.+|.+|+|+|..|+||||-..+|+++|...+.++-+...|.+|..... ...+.++.. ..+.++. .
T Consensus 137 ~~p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpA--------a 208 (340)
T COG0552 137 KKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPA--------A 208 (340)
T ss_pred CCcEEEEEEecCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEccCCCCCcH--------H
Confidence 468999999999999999999999999999999999999999988654 223444443 2232221 1
Q ss_pred HHHHHHHHH-hcCCeEEEEeCCchhH
Q psy2713 77 AQEDATKWL-KNDGEVAIIDGTTATM 101 (143)
Q Consensus 77 ~~~~~~~~l-~~~~~~vi~d~~~~~~ 101 (143)
...++++.. ..+-.++++|+.....
T Consensus 209 VafDAi~~Akar~~DvvliDTAGRLh 234 (340)
T COG0552 209 VAFDAIQAAKARGIDVVLIDTAGRLH 234 (340)
T ss_pred HHHHHHHHHHHcCCCEEEEeCccccc
Confidence 233344444 3445677788776544
No 148
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.80 E-value=5.2e-08 Score=73.43 Aligned_cols=44 Identities=18% Similarity=0.178 Sum_probs=38.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
+|.+|+|+|++||||||++..|+..+...+.++.++..|.++..
T Consensus 240 ~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~Ria 283 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG 283 (436)
T ss_pred CCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchH
Confidence 46799999999999999999999988777888899999988744
No 149
>PRK07933 thymidylate kinase; Validated
Probab=98.78 E-value=1.1e-07 Score=66.59 Aligned_cols=37 Identities=19% Similarity=0.334 Sum_probs=31.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
++|+|.|+.||||||+++.|+++|...++++......
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~~~~~P 37 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVATLAFP 37 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 4799999999999999999999999888776665443
No 150
>PRK15453 phosphoribulokinase; Provisional
Probab=98.78 E-value=8.9e-09 Score=74.25 Aligned_cols=43 Identities=14% Similarity=0.319 Sum_probs=38.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++.+|+++|.|||||||+|+.|++.++..++.+.+++.|+|.+
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4579999999999999999999999987778888899998765
No 151
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.77 E-value=7.1e-08 Score=72.38 Aligned_cols=87 Identities=17% Similarity=0.215 Sum_probs=57.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh------hcCCCCccccCchhhhhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE------LYNSHDIFRVDNTEGYNIRQLSAREAQ 78 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
.+.+++++|++||||||++..|+..+...+.++.+++.|.++..... ...+.+++... +. ..+
T Consensus 205 ~~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~--dp---------~dL 273 (407)
T PRK12726 205 NHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVAT--SP---------AEL 273 (407)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecC--CH---------HHH
Confidence 46799999999999999999999888667888999999998764321 11223332211 11 112
Q ss_pred HHHHHHHh--cCCeEEEEeCCchhHH
Q psy2713 79 EDATKWLK--NDGEVAIIDGTTATME 102 (143)
Q Consensus 79 ~~~~~~l~--~~~~~vi~d~~~~~~~ 102 (143)
..+++.+. .....+++|+....+.
T Consensus 274 ~~al~~l~~~~~~D~VLIDTAGr~~~ 299 (407)
T PRK12726 274 EEAVQYMTYVNCVDHILIDTVGRNYL 299 (407)
T ss_pred HHHHHHHHhcCCCCEEEEECCCCCcc
Confidence 33333332 3357899999987553
No 152
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.77 E-value=2.4e-07 Score=63.19 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
++.+|+|+|++||||||+++.|.+.++.
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~ 28 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPD 28 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhccc
Confidence 4678999999999999999999988653
No 153
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.76 E-value=4.2e-07 Score=69.11 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=37.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH-ccCCCCceeEehhhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL-TWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l-~~~~~~~~~~~~d~~~~~~ 49 (143)
++.+++++|++||||||++..|+..+ ...+.++.++..|.++...
T Consensus 222 ~~~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~aA 267 (432)
T PRK12724 222 QRKVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAA 267 (432)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhhhH
Confidence 46789999999999999999999765 3557778888989877653
No 154
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=98.74 E-value=1.3e-08 Score=70.45 Aligned_cols=31 Identities=26% Similarity=0.260 Sum_probs=24.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.+|.++|.+||||||+++.|+. ++...+++|
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D 32 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDAD 32 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCc
Confidence 4799999999999999999986 455444443
No 155
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.74 E-value=9.6e-08 Score=65.25 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.+|+++|||||||+|++..|.+.+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 4689999999999999999999875
No 156
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=98.74 E-value=1e-07 Score=74.26 Aligned_cols=36 Identities=14% Similarity=0.247 Sum_probs=30.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.+.+|.+.|+|||||||+|+.|+++|+..+++++.+
T Consensus 283 ~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~ 318 (512)
T PRK13477 283 RQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAM 318 (512)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCce
Confidence 457999999999999999999999998666654444
No 157
>PLN02165 adenylate isopentenyltransferase
Probab=98.74 E-value=1.6e-07 Score=69.37 Aligned_cols=33 Identities=24% Similarity=0.265 Sum_probs=26.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
+..+|+++|++||||||+|..|++.++...+++
T Consensus 42 ~g~iivIiGPTGSGKStLA~~LA~~l~~eIIsa 74 (334)
T PLN02165 42 KDKVVVIMGATGSGKSRLSVDLATRFPSEIINS 74 (334)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHcCCceecC
Confidence 345899999999999999999999987543333
No 158
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.72 E-value=2.2e-08 Score=57.74 Aligned_cols=23 Identities=35% Similarity=0.600 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+|+++|+|||||||+++.|++.+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999997
No 159
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.72 E-value=4.7e-07 Score=63.57 Aligned_cols=27 Identities=33% Similarity=0.335 Sum_probs=23.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+|++.|.-||||||+++.|++++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~ 27 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKY 27 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCe
Confidence 589999999999999999999986543
No 160
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=6e-07 Score=62.49 Aligned_cols=130 Identities=20% Similarity=0.105 Sum_probs=72.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh------hhhhhhhcCCCCccccCchhhhhHHHHHHHH-
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY------RRKHLELYNSHDIFRVDNTEGYNIRQLSARE- 76 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 76 (143)
|+.++|.+-|+-||||||.++.|++++...++++........ .+.... ++..-++ ..... ...+..
T Consensus 1 ~~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll--~~~~~~~---~~~e~--lLfaadR 73 (208)
T COG0125 1 MKGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLL--NGEEKLS---PKAEA--LLFAADR 73 (208)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHc--CCccCCC---HHHHH--HHHHHHH
Confidence 467899999999999999999999999988886655533322 111110 0000011 11111 111111
Q ss_pred --HHHHHHHHHhcCCeEEEEeCCchhHHHHH--------HHHHHHHhhcC---CEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 77 --AQEDATKWLKNDGEVAIIDGTTATMEKRK--------QIHDYFARKMG---FKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 77 --~~~~~~~~l~~~~~~vi~d~~~~~~~~r~--------~~~~~~~~~~~---~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+...+......|.+||.|=.....-... .|...+-+... .|-+.+.+.+|.++.++|-.+|..
T Consensus 74 ~~h~~~~i~pal~~g~vVI~DRy~~Ss~AYQg~~~~~~~~~~~~l~~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~ 150 (208)
T COG0125 74 AQHLEEVIKPALKEGKVVICDRYVDSSLAYQGGGRGLDLDWVLALNEFAPGGLKPDLTLYLDVPPEVALERIRKRGE 150 (208)
T ss_pred HHHHHHHHHHhhcCCCEEEECCcccHHHHhhhhccCCCHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 12333333234577888775432211111 12220212222 566788889999999999888864
No 161
>PRK07429 phosphoribulokinase; Provisional
Probab=98.70 E-value=4.8e-07 Score=67.09 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=32.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.++.+|.++|.+||||||+++.|+..++.. ...+++.|++
T Consensus 6 ~~~~IIgI~G~SGSGKSTla~~L~~ll~~~--~~~vi~~Dd~ 45 (327)
T PRK07429 6 DRPVLLGVAGDSGCGKTTFLRGLADLLGEE--LVTVICTDDY 45 (327)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHhHhccC--ceEEEEeccc
Confidence 357899999999999999999999888643 2356677765
No 162
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=98.69 E-value=2.1e-07 Score=59.52 Aligned_cols=23 Identities=48% Similarity=0.758 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|++.|+||+||||+++.+++.++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 68999999999999999999975
No 163
>KOG1533|consensus
Probab=98.69 E-value=2.2e-07 Score=65.12 Aligned_cols=40 Identities=20% Similarity=0.420 Sum_probs=35.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+...+++|||||||||.+..+.+-+...+-+..+++.|..
T Consensus 2 ~fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPa 41 (290)
T KOG1533|consen 2 PFGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPA 41 (290)
T ss_pred CcceEEEcCCCCCccchhhhHHHHHHHhCCceEEEecCCc
Confidence 5567899999999999999999999988998999988853
No 164
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=98.68 E-value=8.8e-08 Score=66.05 Aligned_cols=28 Identities=29% Similarity=0.545 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..+|++.|+=|+||||+|+.|+++++..
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~ 31 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFK 31 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCc
Confidence 4689999999999999999999999843
No 165
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=98.66 E-value=3.5e-08 Score=70.24 Aligned_cols=34 Identities=18% Similarity=0.208 Sum_probs=27.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.+|.++|..||||||+++.|.+.++...+++|.+
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~viDaD~i 35 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVIDADLV 35 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEehHHH
Confidence 4799999999999999999998766554544444
No 166
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.66 E-value=2.2e-08 Score=71.73 Aligned_cols=40 Identities=18% Similarity=0.336 Sum_probs=36.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+|.++|.|||||||+++.|.+.++..+.++.+++.|+|.+
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 5889999999999999999999988888889999998866
No 167
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=98.64 E-value=4e-08 Score=66.94 Aligned_cols=118 Identities=13% Similarity=0.246 Sum_probs=62.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh----------cCCCCccccCc-hhhhhHHHH---
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL----------YNSHDIFRVDN-TEGYNIRQL--- 72 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~----------~~~~~~~~~~~-~~~~~~~~~--- 72 (143)
++|.++|..||||||+++.|++ ++. .++++|.+-+..+.+ .-+.++++.++ -+...+...
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~-----~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~ 74 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGF-----PVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFS 74 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT------EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTT
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCC-----CEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhc
Confidence 4799999999999999999988 554 455666654443321 11233333322 111222111
Q ss_pred ----------HHHH-HHHHHHHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 73 ----------SARE-AQEDATKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 73 ----------~~~~-~~~~~~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+... ....+.+.+. .....+++|.+..... .|.. . ++. ++.+.||.+.-++|-++|.
T Consensus 75 d~~~~~~L~~iihP~I~~~~~~~~~~~~~~~~~v~e~pLL~E~---~~~~-~-----~D~-vi~V~a~~e~ri~Rl~~R~ 144 (180)
T PF01121_consen 75 DPEKLKKLENIIHPLIREEIEKFIKRNKSEKVVVVEIPLLFES---GLEK-L-----CDE-VIVVYAPEEIRIKRLMERD 144 (180)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHCHSTSEEEEE-TTTTTT---TGGG-G-----SSE-EEEEE--HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhHHHHHHHHHHHHhccCCCEEEEEcchhhhh---hHhh-h-----hce-EEEEECCHHHHHHHHHhhC
Confidence 1111 1122333331 1126889999887653 2333 2 332 4566789999889888885
Q ss_pred c
Q psy2713 140 M 140 (143)
Q Consensus 140 ~ 140 (143)
.
T Consensus 145 ~ 145 (180)
T PF01121_consen 145 G 145 (180)
T ss_dssp T
T ss_pred C
Confidence 3
No 168
>PLN02318 phosphoribulokinase/uridine kinase
Probab=98.64 E-value=3.2e-07 Score=72.26 Aligned_cols=38 Identities=26% Similarity=0.489 Sum_probs=31.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.+.+|.+.|++||||||+++.|+..+. .+.+++.|+|.
T Consensus 64 ~riIIGIaGpSGSGKTTLAk~LaglLp----~vgvIsmDdy~ 101 (656)
T PLN02318 64 GIILVGVAGPSGAGKTVFTEKVLNFMP----SIAVISMDNYN 101 (656)
T ss_pred CeEEEEEECCCCCcHHHHHHHHHhhCC----CcEEEEEccee
Confidence 468999999999999999999998763 35677888764
No 169
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=98.64 E-value=5.3e-08 Score=71.53 Aligned_cols=36 Identities=36% Similarity=0.557 Sum_probs=29.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+++.+|+++|++||||||+|..|++.++. .+++.|.
T Consensus 2 ~~~~~i~i~GptgsGKt~la~~la~~~~~-----~iis~Ds 37 (307)
T PRK00091 2 MKPKVIVIVGPTASGKTALAIELAKRLNG-----EIISADS 37 (307)
T ss_pred CCceEEEEECCCCcCHHHHHHHHHHhCCC-----cEEeccc
Confidence 45689999999999999999999998753 4556655
No 170
>KOG1532|consensus
Probab=98.63 E-value=3.6e-07 Score=65.53 Aligned_cols=45 Identities=22% Similarity=0.402 Sum_probs=39.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
..|.+|++.|+.||||||+.+.|..+++....+.-++++|..-..
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~ 61 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRN 61 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHHhhccCCCeEEeCCHHHhc
Confidence 357899999999999999999999999988888899999865443
No 171
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.62 E-value=1.2e-06 Score=63.17 Aligned_cols=98 Identities=19% Similarity=0.190 Sum_probs=58.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
.+|+++|+|||||||-.+.|-. ...++.|++-... +.++++.+.
T Consensus 2 ~~vIiTGlSGaGKs~Al~~lED--------~Gy~cvDNlP~~L----------------------------l~~l~~~~~ 45 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRALED--------LGYYCVDNLPPSL----------------------------LPQLIELLA 45 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHHHh--------cCeeEEcCCcHHH----------------------------HHHHHHHHH
Confidence 4899999999999999988731 2334444432221 111122211
Q ss_pred -----cCCeEEEEeCCchhH-HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 87 -----NDGEVAIIDGTTATM-EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 87 -----~~~~~vi~d~~~~~~-~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
.....+++|.-.... ........ -+++.+..+.+|.+.|+++++++|-..-++.
T Consensus 46 ~~~~~~~~~Ai~iD~R~~~~~~~~~~~~~-~l~~~~~~~~ilFLdA~d~~LirRy~eTRR~ 105 (284)
T PF03668_consen 46 QSNSKIEKVAIVIDIRSREFFEDLFEALD-ELRKKGIDVRILFLDASDEVLIRRYSETRRR 105 (284)
T ss_pred hcCCCCceEEEEEeCCChHHHHHHHHHHH-HHHhcCCceEEEEEECChHHHHHHHHhccCC
Confidence 123446677765432 22222333 3344588888888999999999997665443
No 172
>KOG1534|consensus
Probab=98.62 E-value=2e-07 Score=64.35 Aligned_cols=44 Identities=9% Similarity=0.127 Sum_probs=38.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
|+++.+++.||.||||||++..+.++-...|-...+++.|...+
T Consensus 1 mm~ya~lV~GpAgSGKSTyC~~~~~h~e~~gRs~~vVNLDPAae 44 (273)
T KOG1534|consen 1 MMRYAQLVMGPAGSGKSTYCSSMYEHCETVGRSVHVVNLDPAAE 44 (273)
T ss_pred CCceeEEEEccCCCCcchHHHHHHHHHHhhCceeEEeecCHHHH
Confidence 46788999999999999999999999888888899999986533
No 173
>KOG2134|consensus
Probab=98.62 E-value=9.6e-08 Score=70.86 Aligned_cols=99 Identities=22% Similarity=0.273 Sum_probs=69.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
.+|+++|.|||||||++......-+.. .++.|. ... . +.|+-...+.+.
T Consensus 270 eiV~~vgfp~sGks~f~a~~~~~~~y~-----~vn~d~--------------lg~--------~----~~C~~~~~e~l~ 318 (422)
T KOG2134|consen 270 EIVVAVGFPGSGKSTFAAKRVVPNGYK-----IVNADT--------------LGT--------P----QNCLLANAEALK 318 (422)
T ss_pred cEEEEEecCCCCcchhhhhhcccCcee-----Eeeccc--------------CCC--------c----hhhHHHHHHHhh
Confidence 689999999999999998764332211 122211 110 0 244555555555
Q ss_pred cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
. +..|++|.++.+.+.|..+.+ .+++.+.+...+++.++.+.....+..|
T Consensus 319 ~-~~sVvidnt~pd~~sr~~~~~-~a~e~~~p~rcf~~~~s~eq~~hn~~fR 368 (422)
T KOG2134|consen 319 H-GKSVVIDNTNPDAESRKYYLD-CATEREIPIRCFEMNSSVEQAQHNNRFR 368 (422)
T ss_pred c-ccEEeeCCCCcchHHHHHHhh-hHHHhCccceeeeeccHHHhhhccccch
Confidence 4 678888999999999999999 9999999999999888877655444433
No 174
>KOG3220|consensus
Probab=98.62 E-value=8.2e-07 Score=60.84 Aligned_cols=117 Identities=19% Similarity=0.165 Sum_probs=67.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc----------CCCCccccCc-------------
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY----------NSHDIFRVDN------------- 63 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~----------~~~~~~~~~~------------- 63 (143)
.+|.++|..||||||+++.+. .++..-+|+|.+ -+....+. .+.++..+++
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~v-----aR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~ 75 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVV-----AREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFS 75 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHH-----HHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhC
Confidence 478999999999999999997 556555544444 33332210 0111111100
Q ss_pred -hhhhhHHH-----HHHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 64 -TEGYNIRQ-----LSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 64 -~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.+...... .+...++.++..++..+-..+|+|.+-..+. .|.. .+ ...|-++||.+.-++|-..
T Consensus 76 ~~~~r~~Ln~IthP~Ir~em~ke~~~~~l~G~r~ivlDiPLLFE~---~~~~-~~------~~tvvV~cd~~~Ql~Rl~~ 145 (225)
T KOG3220|consen 76 DPKKRQALNKITHPAIRKEMFKEILKLLLRGYRVIVLDIPLLFEA---KLLK-IC------HKTVVVTCDEELQLERLVE 145 (225)
T ss_pred CHHHHHHHHhcccHHHHHHHHHHHHHHHhcCCeEEEEechHHHHH---hHHh-he------eeEEEEEECcHHHHHHHHH
Confidence 01000111 1234556777777777777888888877654 3443 22 2346678999997777776
Q ss_pred hh
Q psy2713 138 QS 139 (143)
Q Consensus 138 r~ 139 (143)
|-
T Consensus 146 Rd 147 (225)
T KOG3220|consen 146 RD 147 (225)
T ss_pred hc
Confidence 64
No 175
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.62 E-value=9.6e-07 Score=58.91 Aligned_cols=39 Identities=26% Similarity=0.325 Sum_probs=31.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
+++++++|.||+||||+.+...+.+ ++..+++-++++-.
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l----~~~~ivNyG~~Mle 42 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKEL----VKHKIVNYGDLMLE 42 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHH----hhceeeeHhHHHHH
Confidence 5899999999999999999999887 34456677776554
No 176
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=98.61 E-value=2.6e-07 Score=60.27 Aligned_cols=24 Identities=25% Similarity=0.421 Sum_probs=21.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+|+++|++||||||+++.|++.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998764
No 177
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.61 E-value=4.1e-07 Score=68.80 Aligned_cols=45 Identities=27% Similarity=0.286 Sum_probs=38.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc----cCCCCceeEehhhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT----WTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~----~~~~~~~~~~~d~~~~~~ 49 (143)
+|.+|+++|++|+||||.+..|+..+. ..+.++.++..|.|+...
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa 221 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGA 221 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHH
Confidence 468999999999999999999998875 246788899999987664
No 178
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=98.61 E-value=2.6e-07 Score=67.22 Aligned_cols=44 Identities=30% Similarity=0.351 Sum_probs=36.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC-C-CCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT-D-HKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~-~~~~~~~~d~~~~~ 48 (143)
++.+|+|+|++||||||++..|+.++... + .++.++..|.++..
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~ 238 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIG 238 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchh
Confidence 45799999999999999999999888654 3 78888988877543
No 179
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.61 E-value=1.7e-07 Score=67.78 Aligned_cols=41 Identities=29% Similarity=0.470 Sum_probs=37.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.++.+|.++|+||+||||+...|...|...|+++.++..|.
T Consensus 49 G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDP 89 (323)
T COG1703 49 GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDP 89 (323)
T ss_pred CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECC
Confidence 45679999999999999999999999999999999997774
No 180
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.60 E-value=7e-07 Score=60.35 Aligned_cols=25 Identities=20% Similarity=0.353 Sum_probs=22.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++|+++|+|||||||+|..++..++
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~ 26 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSG 26 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcC
Confidence 3689999999999999999998865
No 181
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.60 E-value=4.7e-08 Score=67.58 Aligned_cols=34 Identities=21% Similarity=0.371 Sum_probs=31.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.+|.+-||+||||||+|+.|+++|++.++++..+
T Consensus 5 ~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGam 38 (222)
T COG0283 5 IIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAM 38 (222)
T ss_pred eEEEEeCCCccChHHHHHHHHHHhCCCeecccHH
Confidence 7899999999999999999999999998887665
No 182
>PRK06893 DNA replication initiation factor; Validated
Probab=98.60 E-value=1.1e-06 Score=62.10 Aligned_cols=36 Identities=17% Similarity=0.173 Sum_probs=29.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
.+++.|+||+|||+++..++..+...+.++..+...
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~ 76 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLS 76 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHH
Confidence 689999999999999999998876556666666654
No 183
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=98.59 E-value=8e-08 Score=69.99 Aligned_cols=44 Identities=20% Similarity=0.343 Sum_probs=34.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~ 47 (143)
..|.+|.+.|++||||||+|+.|...+... ..++.+++.|++..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~ 105 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLH 105 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccc
Confidence 468899999999999999999998877522 23567778887643
No 184
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.59 E-value=1e-06 Score=58.09 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=30.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+++++|+||+||||++..++..+...+.++.+++.+.
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~ 37 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEE 37 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCc
Confidence 4789999999999999999988766666677766654
No 185
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=98.59 E-value=8.8e-08 Score=64.74 Aligned_cols=42 Identities=19% Similarity=0.199 Sum_probs=35.5
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
|..+++.++.++|++||||||+++.|...+...++++..+..
T Consensus 1 ~~~~~~~ii~ivG~sgsGKTTLi~~li~~l~~~g~~vg~Ik~ 42 (173)
T PRK10751 1 MNKTMIPLLAIAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (173)
T ss_pred CCCCCceEEEEECCCCChHHHHHHHHHHHHhhcCCeEEEEEE
Confidence 455677799999999999999999999999877777777743
No 186
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=98.58 E-value=1.9e-06 Score=60.21 Aligned_cols=38 Identities=24% Similarity=0.235 Sum_probs=31.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.+.|.|||||||+|.+++......+.++.+++.+
T Consensus 19 g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 19 GTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999999999999999998876666677777554
No 187
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=98.57 E-value=1.9e-07 Score=70.94 Aligned_cols=33 Identities=27% Similarity=0.344 Sum_probs=25.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
..|.++|.+||||||+++.|++ ++...+++|.+
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G~~vidaD~i 34 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LGAVVVDADVL 34 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEehHHH
Confidence 3699999999999999999987 56554444444
No 188
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=98.57 E-value=3.3e-06 Score=63.67 Aligned_cols=105 Identities=22% Similarity=0.277 Sum_probs=66.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhhhhhh------cCCCCccccCchhhhhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRKHLEL------YNSHDIFRVDNTEGYNIRQLSARE 76 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 76 (143)
++.+|.|+||.|+||||-..+||.++. ....++.++..|.||-..... .-+.++--... -+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~-----------~~ 270 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYS-----------PK 270 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecC-----------HH
Confidence 367999999999999999999998776 667888999999998876442 11222211111 12
Q ss_pred HHHHHHHHHhcCCeEEEEeCCchh---HHHHHHHHHHHHhh-cCCEEEEE
Q psy2713 77 AQEDATKWLKNDGEVAIIDGTTAT---MEKRKQIHDYFARK-MGFKVLFV 122 (143)
Q Consensus 77 ~~~~~~~~l~~~~~~vi~d~~~~~---~~~r~~~~~~~~~~-~~~~~~~v 122 (143)
-+.+++..+.+ .+.+++|+.... ....+.+.+ ++.. ++..+.++
T Consensus 271 el~~ai~~l~~-~d~ILVDTaGrs~~D~~~i~el~~-~~~~~~~i~~~Lv 318 (407)
T COG1419 271 ELAEAIEALRD-CDVILVDTAGRSQYDKEKIEELKE-LIDVSHSIEVYLV 318 (407)
T ss_pred HHHHHHHHhhc-CCEEEEeCCCCCccCHHHHHHHHH-HHhccccceEEEE
Confidence 24444455544 478999997644 444555555 3332 34444433
No 189
>KOG3308|consensus
Probab=98.57 E-value=1.1e-07 Score=64.98 Aligned_cols=41 Identities=24% Similarity=0.467 Sum_probs=32.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++..+|.+.|.+.|||||||+.|.+.++. +.+++.|++..-
T Consensus 2 ~K~~ivgiSG~TnsGKTTLak~l~~~f~~----~~lIhqDDFyKp 42 (225)
T KOG3308|consen 2 MKTLIVGISGCTNSGKTTLAKSLHRFFPG----CSLIHQDDFYKP 42 (225)
T ss_pred ceEEEEEeecccCCCHhHHHHHHHHHccC----CeeeccccccCc
Confidence 34578999999999999999999998753 347888876443
No 190
>PRK00023 cmk cytidylate kinase; Provisional
Probab=98.56 E-value=8.3e-08 Score=67.65 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=32.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
|++.+|.+.|+|||||||+|+.|++.++..+++.+.+
T Consensus 2 ~~~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~ 38 (225)
T PRK00023 2 MKAIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAM 38 (225)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchh
Confidence 4578999999999999999999999999887776664
No 191
>PRK13976 thymidylate kinase; Provisional
Probab=98.56 E-value=4.7e-06 Score=58.17 Aligned_cols=27 Identities=26% Similarity=0.482 Sum_probs=24.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
++|++.|+.||||||+++.|++.|...
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~~ 27 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSDI 27 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence 479999999999999999999999764
No 192
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.56 E-value=6.7e-08 Score=68.65 Aligned_cols=36 Identities=19% Similarity=0.339 Sum_probs=28.3
Q ss_pred EEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
++|+|||||||+++.+.+++...+.++.+++.|..-
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~ 36 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAV 36 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHh
Confidence 589999999999999999999999999999998643
No 193
>PLN02796 D-glycerate 3-kinase
Probab=98.55 E-value=1.1e-07 Score=70.44 Aligned_cols=43 Identities=23% Similarity=0.390 Sum_probs=36.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.+|.+|.++|++||||||+++.|...+...+.++..++.|++.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY 140 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY 140 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc
Confidence 3578999999999999999999999987666677778877654
No 194
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.54 E-value=1.6e-06 Score=57.60 Aligned_cols=122 Identities=16% Similarity=0.254 Sum_probs=65.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE----ehhh---------hhhhhhhhcCCCCccccCchhhhhHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF----SVSA---------YRRKHLELYNSHDIFRVDNTEGYNIRQ 71 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~----~~d~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 71 (143)
+..+|+++||+|+||.|+.......+.... +..++ ..+. .-...|........|.... .++.+.
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~-r~~fvrRvITRpa~ag~EdH~avs~~eF~~~a~~g~FAlsW-qAhGL~- 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRP-RLHFVRRVITRPADAGGEDHDALSEAEFNTRAGQGAFALSW-QAHGLS- 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCC-ceEEEEEEecccCCCCcccccccCHHHHHHHhhcCceeEEe-hhcCcc-
Confidence 467999999999999999999888874321 11111 1100 0000000000011111000 000000
Q ss_pred HHHHHHHHHHHHHHhcCCeEEEEeCCc-hhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhccC
Q psy2713 72 LSAREAQEDATKWLKNDGEVAIIDGTT-ATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCS 142 (143)
Q Consensus 72 ~~~~~~~~~~~~~l~~~~~~vi~d~~~-~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~~ 142 (143)
...-.++..|+. .|.+||++.+- ..++.|..+-+ ..+|.++++.+.+.+|-.+|...+
T Consensus 81 ---Ygip~eId~wl~-~G~vvl~NgSRa~Lp~arrry~~---------Llvv~ita~p~VLaqRL~~RGREs 139 (192)
T COG3709 81 ---YGIPAEIDLWLA-AGDVVLVNGSRAVLPQARRRYPQ---------LLVVCITASPEVLAQRLAERGRES 139 (192)
T ss_pred ---ccCchhHHHHHh-CCCEEEEeccHhhhHHHHHhhhc---------ceeEEEecCHHHHHHHHHHhccCC
Confidence 111133444555 47889988774 34444444333 456788899999999999998875
No 195
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.53 E-value=3.1e-06 Score=60.07 Aligned_cols=38 Identities=13% Similarity=0.084 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++|+||||||+++..+++.+...+.++..+..+.
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~ 83 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDK 83 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHH
Confidence 47899999999999999999988776677777777765
No 196
>PLN02840 tRNA dimethylallyltransferase
Probab=98.53 E-value=3.2e-07 Score=69.75 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..+|+++|++||||||+|..|++.++..
T Consensus 20 ~~~vi~I~GptgsGKTtla~~La~~~~~~ 48 (421)
T PLN02840 20 KEKVIVISGPTGAGKSRLALELAKRLNGE 48 (421)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHCCCC
Confidence 45689999999999999999999998654
No 197
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=98.53 E-value=1.3e-07 Score=71.71 Aligned_cols=42 Identities=29% Similarity=0.420 Sum_probs=36.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
+|.+|.|.|++||||||+++.|...+...+.++..++.|++.
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY 252 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY 252 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc
Confidence 678999999999999999999998886667778888888764
No 198
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=2.1e-06 Score=58.27 Aligned_cols=26 Identities=27% Similarity=0.319 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+..+++++||+|+||||+.+.|.+..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc
Confidence 46799999999999999999998875
No 199
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=98.52 E-value=8.5e-08 Score=67.24 Aligned_cols=35 Identities=20% Similarity=0.355 Sum_probs=29.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCcee
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKV 39 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~ 39 (143)
++.+|.+.|++||||||+++.|+++++..+++++.
T Consensus 1 ~~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~ 35 (217)
T TIGR00017 1 MAMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGA 35 (217)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCceeeCch
Confidence 35789999999999999999999999876665543
No 200
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.51 E-value=1.2e-07 Score=62.78 Aligned_cols=43 Identities=26% Similarity=0.309 Sum_probs=36.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+++-|.++|+|||||||++..++..|...+++..-|-....+.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~ 46 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVRE 46 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeec
Confidence 4567999999999999999999999988888877776655544
No 201
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.50 E-value=7.6e-06 Score=62.82 Aligned_cols=43 Identities=33% Similarity=0.397 Sum_probs=36.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~ 48 (143)
..+++|+|++|+||||++..|+.++. ..+.++.++..|.++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~ 265 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIG 265 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHH
Confidence 45899999999999999999998775 45788999999988654
No 202
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=98.48 E-value=2.1e-07 Score=68.99 Aligned_cols=41 Identities=27% Similarity=0.401 Sum_probs=36.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.++.+|.++|+|||||||++..|...+...+.++.++..|.
T Consensus 54 ~~~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp 94 (332)
T PRK09435 54 GNALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDP 94 (332)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 45789999999999999999999999988788899888875
No 203
>PLN02748 tRNA dimethylallyltransferase
Probab=98.47 E-value=5.6e-07 Score=69.43 Aligned_cols=35 Identities=23% Similarity=0.377 Sum_probs=28.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+|+++|++||||||||..|++.++ ..+++.|.
T Consensus 21 ~~~~i~i~GptgsGKs~la~~la~~~~-----~eii~~Ds 55 (468)
T PLN02748 21 KAKVVVVMGPTGSGKSKLAVDLASHFP-----VEIINADS 55 (468)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC-----eeEEcCch
Confidence 456899999999999999999999975 34566664
No 204
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=98.47 E-value=8.1e-06 Score=57.34 Aligned_cols=38 Identities=18% Similarity=0.222 Sum_probs=31.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.++|+||||||++|.+++...-..+.++..++.+
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 46899999999999999999997765556777777666
No 205
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.47 E-value=7e-07 Score=57.25 Aligned_cols=27 Identities=33% Similarity=0.612 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...++++.|+||+|||++++.+++.+.
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~ 29 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLN 29 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhH
Confidence 457899999999999999999998874
No 206
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=98.47 E-value=6.5e-06 Score=57.14 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=31.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++.++|+||||||+++.+++......+.++..++.+.
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 478999999999999999999977655566666666653
No 207
>PRK09087 hypothetical protein; Validated
Probab=98.47 E-value=1.8e-06 Score=60.91 Aligned_cols=30 Identities=30% Similarity=0.151 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
.++++|++||||||+++.+++..+..+++.
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~ 75 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHP 75 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecH
Confidence 589999999999999999998765544433
No 208
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.46 E-value=2e-07 Score=59.55 Aligned_cols=38 Identities=32% Similarity=0.309 Sum_probs=29.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+..++++|+|||||||+++.++..+...+.....++.+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~ 39 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGE 39 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCE
Confidence 45799999999999999999999887654334444333
No 209
>KOG3078|consensus
Probab=98.45 E-value=5.2e-07 Score=63.37 Aligned_cols=118 Identities=18% Similarity=0.208 Sum_probs=70.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc---cCchhhhhHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR---VDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
..-.++.|+|||||+|+|..+++.+...++ +.+++.+...... .+.-. .....+..+...+. .. ++
T Consensus 15 ~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl-----~tGdllr~~ia~~--telg~~~~~~~~~g~lvpDeiv---~~-~l 83 (235)
T KOG3078|consen 15 GVRAVLLGAPGSGKGTQAPRLTKNFGVIHI-----STGDLLRDEIASG--TELGKEAKEAIDKGKLVPDEVV---VR-LL 83 (235)
T ss_pred ceEEEEEeCCCCCCCccCHHHHHhcCCccc-----hhHHHHHHHHhcc--CcHHHHHHHHHHhcCcCcHHHH---HH-HH
Confidence 467899999999999999999999987774 5555444432211 11000 00001111111111 12 22
Q ss_pred H-HHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCCE-EEEEEeecCcHHHHHHhhhhh
Q psy2713 83 K-WLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGFK-VLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 83 ~-~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+ .+.. ....+++|....+..+.+.+.+ +++. -.+|++.||++.+.+|-..|.
T Consensus 84 ~~~l~~~~~~~~~ildg~Prt~~qa~~l~~-----~~~~~d~Vi~l~vp~~~L~~ri~~r~ 139 (235)
T KOG3078|consen 84 EKRLENPRCQKGFILDGFPRTVQQAEELLD-----RIAQIDLVINLKVPEEVLVDRITGRR 139 (235)
T ss_pred HhhccccccccccccCCCCcchHHHHHHHH-----ccCCcceEEEecCCHHHHHHHHhccc
Confidence 2 2211 2467999999998876655444 2333 367899999999999877664
No 210
>PRK05973 replicative DNA helicase; Provisional
Probab=98.45 E-value=4.1e-07 Score=64.48 Aligned_cols=38 Identities=24% Similarity=0.266 Sum_probs=31.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.++++.|.||+||||++.+++...-..+.++.+|+.+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEe 102 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEY 102 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeC
Confidence 58999999999999999999876645577777776653
No 211
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.44 E-value=7.3e-06 Score=63.77 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+++.
T Consensus 35 ~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 35 PQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred CceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 4579999999999999999999998764
No 212
>COG4240 Predicted kinase [General function prediction only]
Probab=98.44 E-value=2.7e-07 Score=64.57 Aligned_cols=42 Identities=24% Similarity=0.433 Sum_probs=37.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~ 46 (143)
.|.++.++|+.||||||+|..|...|...+ .++..++.|++.
T Consensus 49 rPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlY 91 (300)
T COG4240 49 RPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLY 91 (300)
T ss_pred CceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhh
Confidence 478999999999999999999999998888 588999999864
No 213
>PRK04296 thymidine kinase; Provisional
Probab=98.44 E-value=3.5e-06 Score=57.88 Aligned_cols=36 Identities=17% Similarity=0.071 Sum_probs=30.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
..+++++|+||+||||++..++.++...+.++.++.
T Consensus 2 g~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k 37 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFK 37 (190)
T ss_pred cEEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999988866677777663
No 214
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.43 E-value=4.8e-06 Score=62.71 Aligned_cols=44 Identities=27% Similarity=0.283 Sum_probs=34.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~ 48 (143)
...+++|+|++|+||||++.+|+.++. ..+ .++.++..|.++..
T Consensus 136 ~g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~g 181 (374)
T PRK14722 136 RGGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIG 181 (374)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Confidence 356899999999999999999998763 223 46778888887543
No 215
>PRK08727 hypothetical protein; Validated
Probab=98.43 E-value=7.7e-06 Score=57.98 Aligned_cols=39 Identities=26% Similarity=0.167 Sum_probs=32.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
..++++|++|+|||+++..++..+...+.++..++.++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~ 80 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAA 80 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHh
Confidence 359999999999999999999887767777777776654
No 216
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.42 E-value=1.1e-05 Score=54.85 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=29.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
++++.|+||+|||+++.+++...-..+.++.+++.+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e 36 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLE 36 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECC
Confidence 378999999999999999987765667777777664
No 217
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.42 E-value=1.4e-05 Score=51.30 Aligned_cols=37 Identities=27% Similarity=0.320 Sum_probs=28.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
...+++.|+||+||||+++.+++.+...+.....+..
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~ 55 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNA 55 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEeh
Confidence 4679999999999999999999887533443444433
No 218
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.42 E-value=5.2e-06 Score=55.82 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.-.|.++||+||||||+-+.++...
T Consensus 29 Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 29 GEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CceEEEeCCCCccHHHHHHHHHhcc
Confidence 3579999999999999999999765
No 219
>PHA00729 NTP-binding motif containing protein
Probab=98.42 E-value=5.6e-07 Score=63.18 Aligned_cols=27 Identities=26% Similarity=0.298 Sum_probs=23.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
....|+++|.||+||||+|..|++.+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999874
No 220
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.42 E-value=7.2e-06 Score=63.47 Aligned_cols=28 Identities=25% Similarity=0.288 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+.+.
T Consensus 40 ~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 40 GHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 4568999999999999999999998764
No 221
>PRK12377 putative replication protein; Provisional
Probab=98.41 E-value=4e-06 Score=59.92 Aligned_cols=42 Identities=21% Similarity=0.243 Sum_probs=35.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
..++|.|+||+|||++|..++..+...+..+..++..++...
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~ 143 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSR 143 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHH
Confidence 468999999999999999999999877888877777665543
No 222
>PF13173 AAA_14: AAA domain
Probab=98.41 E-value=5.9e-06 Score=53.15 Aligned_cols=38 Identities=21% Similarity=0.274 Sum_probs=28.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++.|+.||||||+++++++.+. ..-+...++.++
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~ 39 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDD 39 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCC
Confidence 46899999999999999999998765 223334444443
No 223
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=98.41 E-value=4.1e-07 Score=68.60 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=32.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
..|.+|.++|++||||||++..|.+.+... +++.++.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~~~-~~V~~ik 39 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLSER-FSVGYYK 39 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHhhC-ceEEEEE
Confidence 457899999999999999999999999877 7777773
No 224
>KOG0744|consensus
Probab=98.41 E-value=6e-07 Score=65.77 Aligned_cols=25 Identities=36% Similarity=0.557 Sum_probs=23.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+|++.||||.|||++++.|+++|.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLS 202 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLS 202 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhhe
Confidence 5899999999999999999999984
No 225
>PRK13768 GTPase; Provisional
Probab=98.40 E-value=4.3e-07 Score=65.13 Aligned_cols=40 Identities=23% Similarity=0.346 Sum_probs=35.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+++++++.|++||||||++..++..+...|.++.+++.|.
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l~~~g~~v~~i~~D~ 40 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWLEEQGYDVAIVNLDP 40 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHhcCCceEEEECCC
Confidence 4579999999999999999999999988888888887774
No 226
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.40 E-value=3.1e-07 Score=68.45 Aligned_cols=28 Identities=29% Similarity=0.293 Sum_probs=25.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
++.+++|+|||||||||+|+.|++.+..
T Consensus 77 ~r~il~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 77 RKQILYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4689999999999999999999998854
No 227
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=1.3e-05 Score=62.38 Aligned_cols=27 Identities=26% Similarity=0.333 Sum_probs=24.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+||||+|+.+++.+.+
T Consensus 36 ~~~~Lf~GPpGtGKTTlA~~lA~~l~~ 62 (472)
T PRK14962 36 SHAYIFAGPRGTGKTTVARILAKSLNC 62 (472)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 456899999999999999999999865
No 228
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=98.39 E-value=4.5e-07 Score=64.57 Aligned_cols=41 Identities=27% Similarity=0.396 Sum_probs=32.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+..+|-++|+||+|||||...|.+.+...+.+..++..|.-
T Consensus 28 ~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPS 68 (266)
T PF03308_consen 28 RAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPS 68 (266)
T ss_dssp -SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GG
T ss_pred CceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCC
Confidence 46799999999999999999999999888999999988754
No 229
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=98.38 E-value=1.4e-05 Score=57.64 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=30.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d 43 (143)
.++++.|+||+||||++.+++..+-.. +.++.+++.+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E 68 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLE 68 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEcc
Confidence 589999999999999999998776444 7777788774
No 230
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.38 E-value=2e-07 Score=76.50 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=31.1
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
+||+..+|.+.|+|||||||+|+.|+++|++.++++
T Consensus 30 ~~m~~~~i~idG~~gsGKst~~~~la~~l~~~~~~~ 65 (863)
T PRK12269 30 RPMGTVIIALDGPAGSGKSSVCRLLASRLGAQCLNT 65 (863)
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 467778999999999999999999999998765533
No 231
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=98.38 E-value=5e-06 Score=61.47 Aligned_cols=38 Identities=16% Similarity=0.153 Sum_probs=29.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.++|+|||||||||..++......+-.+..+..+
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 36899999999999999999887665556556666443
No 232
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.37 E-value=2.3e-05 Score=56.69 Aligned_cols=43 Identities=19% Similarity=0.183 Sum_probs=35.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
...++++|++|+||||++..|+..+...+.+..+++.|.++..
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~ 117 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIG 117 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHH
Confidence 4689999999999999999999887665677888888876533
No 233
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.37 E-value=4.2e-06 Score=57.08 Aligned_cols=121 Identities=19% Similarity=0.140 Sum_probs=62.3
Q ss_pred EEccCCCChhHHHHHHHHHHccCCCCceeEehhh----hhhhhhhhcCCCCccc-cCchhhhhHHHHHHHHH---HHH-H
Q psy2713 11 LVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----YRRKHLELYNSHDIFR-VDNTEGYNIRQLSAREA---QED-A 81 (143)
Q Consensus 11 l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---~~~-~ 81 (143)
|-|+.||||||+++.|+++|...+++ .++.... ++.. +. +++. .............+... +.. +
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~-~~~~~~~~~~~~g~~-ir-----~~l~~~~~~~~~~~~~l~~a~r~~~~~~~I 73 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK-VIITFPPGSTPIGEL-IR-----ELLRSESELSPEAEALLFAADRAWHLARVI 73 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE-EEEEESSTSSHHHHH-HH-----HHHHTSSTCGHHHHHHHHHHHHHHHHHHTH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc-ccccCCCCCChHHHH-HH-----HHHhcccCCCHHHHHHHHHHHHHHHHHHHH
Confidence 56999999999999999999988876 3332211 1111 00 0000 00001101111111111 122 2
Q ss_pred HHHHhcCCeEEEEeCCchhHHH---------HHHHHHHHHhhcC--CEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEK---------RKQIHDYFARKMG--FKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~---------r~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
...+. .|.+||+|=.....-. .+.+.. +.+... .|-+++.+.++.++..+|...|..
T Consensus 74 ~~~l~-~g~~VI~DRy~~S~lay~~~~~~~~~~~~~~-~~~~~~~~~PDl~~~Ldv~pe~~~~R~~~r~~ 141 (186)
T PF02223_consen 74 RPALK-RGKIVICDRYIYSTLAYQGAKGELDIDWIWR-LNKDIFLPKPDLTFFLDVDPEEALKRIAKRGE 141 (186)
T ss_dssp HHHHH-TTSEEEEESEHHHHHHHHTTTTSSTHHHHHH-HHHHHHTTE-SEEEEEECCHHHHHHHHHHTSS
T ss_pred HHHHc-CCCEEEEechhHHHHHhCccccCCcchhhhH-HHHHhcCCCCCEEEEEecCHHHHHHHHHcCCc
Confidence 22334 4789998864311100 112222 333222 556778888999999999988865
No 234
>PRK14493 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoaE; Provisional
Probab=98.37 E-value=1.4e-06 Score=63.19 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.+|.++|.+|||||||+..|+..|...| ++.++..|.
T Consensus 2 ~~i~i~G~~gSGKTTLi~~Li~~L~~~G-~V~~IKhd~ 38 (274)
T PRK14493 2 KVLSIVGYKATGKTTLVERLVDRLSGRG-RVGTVKHMD 38 (274)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 3799999999999999999999998888 777776653
No 235
>CHL00181 cbbX CbbX; Provisional
Probab=98.37 E-value=1.1e-05 Score=58.94 Aligned_cols=28 Identities=32% Similarity=0.424 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
...++|.|+||+||||+|+.+++.+...
T Consensus 59 ~~~ill~G~pGtGKT~lAr~la~~~~~~ 86 (287)
T CHL00181 59 GLHMSFTGSPGTGKTTVALKMADILYKL 86 (287)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 3468999999999999999999877543
No 236
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=98.36 E-value=1e-05 Score=58.18 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..-+++.|+||+||||+|+.+++.+..
T Consensus 42 ~~~vll~GppGtGKTtlA~~ia~~l~~ 68 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVARILGKLFKE 68 (261)
T ss_pred cceEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 356899999999999999999987743
No 237
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.36 E-value=3.3e-07 Score=61.36 Aligned_cols=26 Identities=31% Similarity=0.585 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+.|+++|.||+||||+|+.|+ .++..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~ 26 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYK 26 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCc
Confidence 478999999999999999999 66543
No 238
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=98.36 E-value=7.9e-06 Score=66.36 Aligned_cols=43 Identities=26% Similarity=0.297 Sum_probs=34.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~ 48 (143)
+.+|+|+|++|+||||.+.+|+..+. ..+ .++.++..|.++..
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~Rig 229 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTDSFRIG 229 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccchH
Confidence 57999999999999999999998773 333 46778888887744
No 239
>PRK06526 transposase; Provisional
Probab=98.35 E-value=8.6e-06 Score=58.47 Aligned_cols=42 Identities=24% Similarity=0.249 Sum_probs=32.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+..++++|+||+|||++|..|+..+-..+.++..++..++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~ 139 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVA 139 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHH
Confidence 457999999999999999999988766677766665554433
No 240
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=98.34 E-value=1.2e-05 Score=58.66 Aligned_cols=29 Identities=28% Similarity=0.448 Sum_probs=24.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.-++|.|+||+||||+|+.+++.+...+.
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 46999999999999999999988865443
No 241
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=98.34 E-value=7.7e-06 Score=54.66 Aligned_cols=21 Identities=33% Similarity=0.555 Sum_probs=18.2
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~ 29 (143)
|+|+|.||+||||+++.|++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~ 22 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR 22 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc
Confidence 789999999999999999988
No 242
>PRK05642 DNA replication initiation factor; Validated
Probab=98.33 E-value=8.3e-06 Score=57.85 Aligned_cols=40 Identities=10% Similarity=0.101 Sum_probs=33.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
..++++|++|+|||++++.++..+...+.++..++.+++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~ 85 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELL 85 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHH
Confidence 4689999999999999999998776667778888887654
No 243
>PRK08181 transposase; Validated
Probab=98.33 E-value=4.6e-06 Score=60.29 Aligned_cols=43 Identities=21% Similarity=0.192 Sum_probs=35.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
...++|+|+||+|||++|..++..+...+.++..++..++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~ 148 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQK 148 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHH
Confidence 4569999999999999999999888767887877777665443
No 244
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=2.3e-05 Score=62.83 Aligned_cols=28 Identities=25% Similarity=0.316 Sum_probs=25.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 37 ~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 37 HHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5689999999999999999999999763
No 245
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=98.33 E-value=2.2e-05 Score=56.55 Aligned_cols=38 Identities=13% Similarity=0.244 Sum_probs=30.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+++++|+||+||||+|.+++...-..+.++..++.+
T Consensus 36 gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 36 YSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 46899999999999999999987654456777777655
No 246
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.32 E-value=2.8e-05 Score=61.82 Aligned_cols=29 Identities=17% Similarity=0.240 Sum_probs=25.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..++|+|++|+||||+|+.+++.+.+.+
T Consensus 38 ~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~ 66 (605)
T PRK05896 38 THAYIFSGPRGIGKTSIAKIFAKAINCLN 66 (605)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 56799999999999999999999997654
No 247
>PRK13886 conjugal transfer protein TraL; Provisional
Probab=98.31 E-value=1.8e-05 Score=56.27 Aligned_cols=115 Identities=12% Similarity=0.207 Sum_probs=69.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh--hhhc--CCCCccccCchhhhhHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH--LELY--NSHDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
|++.++++.|--|+||||+|..|+..+...+.++..+..|...... +... ...++... + .+....++
T Consensus 1 m~~i~~i~~~KGGvGKSt~a~~la~~l~~~g~~vl~iD~D~~n~~~~~~~~l~~~~~~i~~~---~------~i~~r~fD 71 (241)
T PRK13886 1 MAKIHMVLQGKGGVGKSFIAATIAQYKASKGQKPLCIDTDPVNATFEGYKALNVRRLNIMDG---D------EINTRNFD 71 (241)
T ss_pred CCeEEEEecCCCCCcHHHHHHHHHHHHHhCCCCEEEEECCCCCchhhhHHhcCCcceecccC---C------ccchhhHH
Confidence 4566777889999999999999999998888888888777433221 1100 01111110 0 00122345
Q ss_pred HHHHHHhcCCeEEEEeCCchhHHHHH------HHHHHHHhhcCCEEEEEEeecCc
Q psy2713 80 DATKWLKNDGEVAIIDGTTATMEKRK------QIHDYFARKMGFKVLFVELIVQD 128 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~~~~r~------~~~~~~~~~~~~~~~~v~~~~~~ 128 (143)
++++.+...+..+|+|........-. .+.+ ++++.|..+++..+...-
T Consensus 72 ~Lve~i~~~~~dvIIDngAs~~~~l~~yl~~n~l~~-ll~e~g~~lvvh~vi~gg 125 (241)
T PRK13886 72 ALVEMIASTEGDVIIDNGASSFVPLSHYLISNQVPA-LLQDMGHELVVHTVVTGG 125 (241)
T ss_pred HHHHHHhccCCCEEEECCCcchHHHHHHHHhCcHHH-HHHHCCceEEEEEEECCC
Confidence 56665533345578887764443332 3445 788889998877666554
No 248
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.30 E-value=3.3e-05 Score=56.92 Aligned_cols=43 Identities=19% Similarity=0.159 Sum_probs=36.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
..-++|.|++|+|||+++..++..+...++++..+....+...
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~ 198 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRE 198 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHH
Confidence 4579999999999999999999999888888888877765444
No 249
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=98.30 E-value=7.4e-06 Score=58.80 Aligned_cols=43 Identities=21% Similarity=0.370 Sum_probs=34.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCC--ceeEehhhh
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK--SKVFSVSAY 45 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~--~~~~~~d~~ 45 (143)
...|.+|.++|.||+||||+|+.|+..+...+-. ++++-.|.+
T Consensus 79 ~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGF 123 (283)
T COG1072 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGF 123 (283)
T ss_pred CCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEecccc
Confidence 3458899999999999999999999888654433 677777755
No 250
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=2.3e-05 Score=59.03 Aligned_cols=27 Identities=30% Similarity=0.305 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+||||+|+.+++.+.+
T Consensus 38 ~h~~L~~Gp~G~GKTtla~~la~~l~c 64 (363)
T PRK14961 38 HHAWLLSGTRGVGKTTIARLLAKSLNC 64 (363)
T ss_pred CeEEEEecCCCCCHHHHHHHHHHHhcC
Confidence 567899999999999999999999864
No 251
>PRK06620 hypothetical protein; Validated
Probab=98.30 E-value=4.6e-06 Score=58.40 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..++++|+|||||||+++.+++..+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~ 69 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSN 69 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccC
Confidence 4689999999999999999887754
No 252
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=98.29 E-value=8.8e-07 Score=59.00 Aligned_cols=36 Identities=25% Similarity=0.331 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+|.++|++||||||++..|.+.+...|+++.++..+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l~~~G~~V~viK~~ 36 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHD 36 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 578999999999999999999998778888887544
No 253
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.3e-05 Score=61.51 Aligned_cols=28 Identities=21% Similarity=0.300 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 38 HHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999999764
No 254
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=98.28 E-value=1.3e-06 Score=58.39 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
.+|.++|.+||||||++..|...+...++++.++..+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g~~V~~iK~~ 38 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARGLRVAVIKHD 38 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEec
Confidence 4899999999999999999999998888877777543
No 255
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=3e-05 Score=61.22 Aligned_cols=27 Identities=26% Similarity=0.320 Sum_probs=24.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|++|+||||+|+.+++.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 38 HHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999999875
No 256
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.28 E-value=5.1e-06 Score=56.56 Aligned_cols=44 Identities=20% Similarity=0.141 Sum_probs=34.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
..-++|.|+||+|||++|..++..+-..++.+..+...++....
T Consensus 47 ~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l 90 (178)
T PF01695_consen 47 GENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDEL 90 (178)
T ss_dssp --EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHH
T ss_pred CeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccc
Confidence 45799999999999999999998887788989889888776553
No 257
>PRK08116 hypothetical protein; Validated
Probab=98.27 E-value=2.7e-05 Score=56.36 Aligned_cols=40 Identities=20% Similarity=0.101 Sum_probs=33.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.-++|.|.||+|||+||..+++.+...+..+..++..++.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll 154 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLL 154 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 4589999999999999999999986667777777766543
No 258
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=98.27 E-value=1.7e-05 Score=56.37 Aligned_cols=40 Identities=18% Similarity=0.194 Sum_probs=30.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..++++.|+||||||++|.+++...-..+.++.+++.+.
T Consensus 20 ~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 20 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 3478999999999999999998755334577777776543
No 259
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=98.27 E-value=1.3e-06 Score=64.09 Aligned_cols=42 Identities=26% Similarity=0.280 Sum_probs=36.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
..+.+|.++|+|||||||++..|...+...+.++.++..|..
T Consensus 32 ~~~~~i~i~G~~G~GKttl~~~l~~~~~~~~~~v~~i~~D~~ 73 (300)
T TIGR00750 32 GNAHRVGITGTPGAGKSTLLEALGMELRRRGLKVAVIAVDPS 73 (300)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 346789999999999999999999988777888888877743
No 260
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=98.25 E-value=1.3e-05 Score=59.28 Aligned_cols=37 Identities=16% Similarity=0.119 Sum_probs=29.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
..++.+.|+|||||||+|..++......+-.+..++.
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~ 91 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDA 91 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECc
Confidence 3589999999999999999998766555555666644
No 261
>PRK09183 transposase/IS protein; Provisional
Probab=98.25 E-value=3.6e-05 Score=55.46 Aligned_cols=39 Identities=23% Similarity=0.191 Sum_probs=31.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
..+++.|+||+||||+|..|+..+...+.++..++..++
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l 141 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADL 141 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHH
Confidence 468899999999999999998776566777767665443
No 262
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=98.25 E-value=2.4e-05 Score=59.14 Aligned_cols=38 Identities=24% Similarity=0.190 Sum_probs=30.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|.||+||||++.+++..+...+.++.+++.+
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46899999999999999999998775555566666544
No 263
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=98.25 E-value=8.4e-07 Score=67.42 Aligned_cols=34 Identities=26% Similarity=0.351 Sum_probs=30.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.|.-|+|.|+||+||||+|+.|++.++..+++.+
T Consensus 46 ~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vd 79 (441)
T TIGR00390 46 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 79 (441)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCeEEEee
Confidence 4678999999999999999999999988776665
No 264
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=98.24 E-value=1.4e-06 Score=57.13 Aligned_cols=36 Identities=33% Similarity=0.333 Sum_probs=29.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
.+|.++|+++|||||+++.|..++...+++..++..
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~ 36 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKH 36 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEE
Confidence 378999999999999999999999888888886533
No 265
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.24 E-value=8.9e-07 Score=61.99 Aligned_cols=27 Identities=30% Similarity=0.310 Sum_probs=22.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.-++|.||||+||||+|.-|++.++..
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~ 77 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVN 77 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--
T ss_pred ceEEEECCCccchhHHHHHHHhccCCC
Confidence 468999999999999999999998643
No 266
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=98.24 E-value=2.4e-06 Score=62.18 Aligned_cols=32 Identities=34% Similarity=0.501 Sum_probs=26.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+|+++|++|||||++|..|++.++. .+++.|.
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~-----~iis~Ds 32 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNA-----EIISVDS 32 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCC-----cEEEech
Confidence 5899999999999999999998753 4566665
No 267
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=98.23 E-value=4.7e-05 Score=53.89 Aligned_cols=38 Identities=16% Similarity=0.209 Sum_probs=29.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|+|||||||+|.+++..+-..+.++..++.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 35899999999999999988776654456667777654
No 268
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.23 E-value=3.8e-05 Score=60.18 Aligned_cols=43 Identities=26% Similarity=0.268 Sum_probs=34.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~~ 48 (143)
..+|+|+|++|+||||++..|+..+... +.++.++..|.++..
T Consensus 350 G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRig 394 (559)
T PRK12727 350 GGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVG 394 (559)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccccc
Confidence 4689999999999999999999876443 356778888877643
No 269
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.23 E-value=3.9e-05 Score=60.13 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+++.
T Consensus 43 ~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~ 70 (507)
T PRK06645 43 AGGYLLTGIRGVGKTTSARIIAKAVNCS 70 (507)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 4679999999999999999999999764
No 270
>PLN02772 guanylate kinase
Probab=98.23 E-value=3.3e-05 Score=58.40 Aligned_cols=27 Identities=19% Similarity=0.241 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..++|+|+||+|||||||.+.|.+.+.
T Consensus 134 ~~k~iVlsGPSGvGKsTL~~~L~~~~p 160 (398)
T PLN02772 134 AEKPIVISGPSGVGKGTLISMLMKEFP 160 (398)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhhhcc
Confidence 346999999999999999999987653
No 271
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=98.23 E-value=1.7e-06 Score=56.09 Aligned_cols=28 Identities=36% Similarity=0.266 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..+|++.|..||||||+++.+++.++..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 4689999999999999999999998754
No 272
>KOG3877|consensus
Probab=98.22 E-value=6.2e-05 Score=54.36 Aligned_cols=41 Identities=27% Similarity=0.355 Sum_probs=32.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCC---ceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK---SKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~---~~~~~~d~~ 45 (143)
..++|.+-|.-|||||++|++||+.|+..+.+ .+.+-.|.+
T Consensus 70 nSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iyvdsy 113 (393)
T KOG3877|consen 70 NSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIYVDSY 113 (393)
T ss_pred cceEEEEeCCcccCchhHHHHHHHHhCCcccccccccceeeccc
Confidence 35799999999999999999999999876543 455544433
No 273
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.22 E-value=4e-05 Score=57.03 Aligned_cols=41 Identities=15% Similarity=0.092 Sum_probs=35.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
..++|.|++|+|||+||..+++.+-..+..+..++.+++..
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~ 224 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIE 224 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHH
Confidence 57999999999999999999998877788888887776544
No 274
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.22 E-value=2.4e-06 Score=59.85 Aligned_cols=41 Identities=12% Similarity=0.074 Sum_probs=32.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.+..++++|+||+||||+|+.+++.....+.+...++..++
T Consensus 37 ~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~ 77 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAEL 77 (226)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHH
Confidence 35689999999999999999999887655666666666554
No 275
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.22 E-value=1.1e-06 Score=71.33 Aligned_cols=33 Identities=24% Similarity=0.458 Sum_probs=30.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.|.+.|+|||||||+|+.|++.+++.++++..+
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~ 35 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAM 35 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcE
Confidence 789999999999999999999999888777665
No 276
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.21 E-value=4e-05 Score=62.25 Aligned_cols=28 Identities=21% Similarity=0.271 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+++.|++.+.+.
T Consensus 38 ~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 38 HHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 5678999999999999999999999764
No 277
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=98.20 E-value=4.7e-05 Score=54.31 Aligned_cols=100 Identities=17% Similarity=0.181 Sum_probs=55.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH-
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL- 85 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l- 85 (143)
.+|+++|++|||||+-.+.|- |...++.|+.-.... .. +.++....
T Consensus 2 ~lvIVTGlSGAGKsvAl~~lE--------DlGyycvDNLPp~Ll-------------------p~------~~~~~~~~~ 48 (286)
T COG1660 2 RLVIVTGLSGAGKSVALRVLE--------DLGYYCVDNLPPQLL-------------------PK------LADLMLTLE 48 (286)
T ss_pred cEEEEecCCCCcHHHHHHHHH--------hcCeeeecCCCHHHH-------------------HH------HHHHHhhcc
Confidence 479999999999999988873 223345554322211 11 11111111
Q ss_pred hc-CCeEEEEeCCch-hHHHHHHHHHHHHhhc-CCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 86 KN-DGEVAIIDGTTA-TMEKRKQIHDYFARKM-GFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 86 ~~-~~~~vi~d~~~~-~~~~r~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.. ....+++|--+. .......+.+ .+++. ++.+.++.+.++++++++|-..-++
T Consensus 49 ~~~~kvAv~iDiRs~~~~~~l~~~l~-~l~~~~~~~~~iLFLeA~~~~Lv~RY~etRR 105 (286)
T COG1660 49 SRITKVAVVIDVRSREFFGDLEEVLD-ELKDNGDIDPRVLFLEADDETLVRRYSETRR 105 (286)
T ss_pred cCCceEEEEEecccchhHHHHHHHHH-HHHhcCCCCceEEEEECchhHHHHHHhhhhh
Confidence 11 123466676543 2233344555 55555 3445666677999999998765443
No 278
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.20 E-value=4.9e-05 Score=60.55 Aligned_cols=28 Identities=25% Similarity=0.267 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~hayLf~Gp~G~GKtt~A~~lak~l~c~ 65 (576)
T PRK14965 38 AHAFLFTGARGVGKTSTARILAKALNCE 65 (576)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhcCC
Confidence 5678999999999999999999998753
No 279
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=98.20 E-value=5.7e-05 Score=58.42 Aligned_cols=38 Identities=21% Similarity=0.167 Sum_probs=31.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
-++++|+||+|||++++.++..+...+.++..++.+.+
T Consensus 143 pl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f 180 (445)
T PRK12422 143 PIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELF 180 (445)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHH
Confidence 47899999999999999999988766777777776654
No 280
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=98.19 E-value=1.7e-05 Score=58.08 Aligned_cols=34 Identities=18% Similarity=0.302 Sum_probs=29.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+.+|+++||.|||||.+|-.|+++. ..++|+|..
T Consensus 4 ~~ii~I~GpTasGKS~LAl~LA~~~------~eIIsaDS~ 37 (300)
T PRK14729 4 NKIVFIFGPTAVGKSNILFHFPKGK------AEIINVDSI 37 (300)
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC------CcEEeccHH
Confidence 4599999999999999999999882 367888864
No 281
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.19 E-value=1.5e-06 Score=56.48 Aligned_cols=23 Identities=52% Similarity=0.720 Sum_probs=21.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|++.|+||+|||++++.+++.++
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~ 24 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLG 24 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhh
Confidence 78999999999999999999984
No 282
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=98.19 E-value=1.6e-06 Score=65.93 Aligned_cols=33 Identities=24% Similarity=0.337 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
|..|+|+|+||+||||+|+.|++.++..++..+
T Consensus 50 ~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD 82 (443)
T PRK05201 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVE 82 (443)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCChheeec
Confidence 578999999999999999999999877665444
No 283
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=98.19 E-value=1.6e-06 Score=58.51 Aligned_cols=32 Identities=28% Similarity=0.319 Sum_probs=25.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
|+++|.||+||||+.+.+.+.+...+++..-|
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~~~~~v~Gf 33 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKKKGLPVGGF 33 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHHTCGGEEEE
T ss_pred EEEECcCCCCHHHHHHHHHHHhhccCCccceE
Confidence 78999999999999999999986555555444
No 284
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.19 E-value=4.2e-05 Score=63.10 Aligned_cols=28 Identities=25% Similarity=0.253 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+.+.
T Consensus 38 ~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 38 HHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 5678999999999999999999998764
No 285
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.19 E-value=8.9e-06 Score=57.11 Aligned_cols=22 Identities=32% Similarity=0.457 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~ 27 (143)
|..++++|.||+||||+|+.++
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~ 33 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLP 33 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcC
Confidence 5789999999999999999885
No 286
>COG1763 MobB Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism]
Probab=98.18 E-value=2.4e-06 Score=57.12 Aligned_cols=39 Identities=26% Similarity=0.305 Sum_probs=34.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+++++-++|.++||||||...|.+.|...|++..++...
T Consensus 1 m~~Il~ivG~k~SGKTTLie~lv~~L~~~G~rVa~iKH~ 39 (161)
T COG1763 1 MMKILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVKHA 39 (161)
T ss_pred CCcEEEEEecCCCChhhHHHHHHHHHHhCCcEEEEEEec
Confidence 457999999999999999999999999999988888543
No 287
>KOG1384|consensus
Probab=98.18 E-value=3.4e-05 Score=56.63 Aligned_cols=132 Identities=15% Similarity=0.146 Sum_probs=68.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh----hhhhhhh-hhh--cCCCCccccCchhhhhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV----SAYRRKH-LEL--YNSHDIFRVDNTEGYNIRQLSAREA 77 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~----d~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
+.++|++.|..|||||-||-.||.+++..-+++|-+.. |-.-... ... ..++-+......+..+-....-..+
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EIINsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~~~e~t~~~F~~~a 85 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEIINSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHPEAEYTAGEFEDDA 85 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceeecccceeeecCcccccccCChhhcCCCChHHhCcCChHhhccHHHHHHHH
Confidence 46899999999999999999999997754443333311 0000000 000 0011111111111111111111122
Q ss_pred HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHH---------------HHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDY---------------FARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+.+..+.+..++|+-+++++.+. +... ...+..|+..++|+.++.+++..|--+|.
T Consensus 86 ~~aie~I~~rgk~PIv~GGs~~yi~a---l~~~~~d~~~dp~~~~~g~~pS~lryd~c~lWlda~~~VL~~~l~~RV 159 (348)
T KOG1384|consen 86 SRAIEEIHSRGKLPIVVGGSNSYLQA---LLSKRFDPKIDPFSSNTGSIPSELRYDCCFLWLDADQAVLFERLDKRV 159 (348)
T ss_pred HHHHHHHHhCCCCCEEeCCchhhHHH---HhhcCCCcccCcccccCCCCCcccccceEEEEEecchHHHHHHHHHHH
Confidence 22222333555566888888876542 2210 00112267788999999999998877663
No 288
>PRK09354 recA recombinase A; Provisional
Probab=98.18 E-value=2e-05 Score=58.87 Aligned_cols=38 Identities=18% Similarity=0.156 Sum_probs=28.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.+.|+|||||||||..++......+-.+..+...
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 36899999999999999999886654455555555443
No 289
>PRK13695 putative NTPase; Provisional
Probab=98.18 E-value=3.3e-05 Score=52.17 Aligned_cols=30 Identities=30% Similarity=0.453 Sum_probs=24.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
+.|+++|.|||||||+++.++..+...+..
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l~~~G~~ 30 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELLKEEGYK 30 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCe
Confidence 358999999999999999998776543444
No 290
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.17 E-value=6.3e-05 Score=60.09 Aligned_cols=29 Identities=31% Similarity=0.418 Sum_probs=26.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..++|+|++|+||||+|+.+++.+.+.+
T Consensus 46 ~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~ 74 (598)
T PRK09111 46 AQAFMLTGVRGVGKTTTARILARALNYEG 74 (598)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhCcCC
Confidence 55799999999999999999999997654
No 291
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.17 E-value=1e-05 Score=63.19 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=32.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++.|+||+||||++.+++...-..+.++.+++.+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eE 301 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACANKERAILFAYEE 301 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeC
Confidence 468999999999999999999987655677777876654
No 292
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.17 E-value=5.3e-06 Score=56.15 Aligned_cols=41 Identities=27% Similarity=0.266 Sum_probs=31.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYR 46 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~ 46 (143)
...++++||+|+|||.+|+.|++.+. ....+...+++..|.
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~ 44 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYS 44 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHC
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccc
Confidence 36899999999999999999999987 344445555555443
No 293
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=98.16 E-value=2.5e-05 Score=55.32 Aligned_cols=39 Identities=18% Similarity=0.283 Sum_probs=31.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~ 44 (143)
..+++++|.||+||||++.+++..+-.. +.++..++.+.
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~ 52 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM 52 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC
Confidence 3589999999999999999998766544 77788887654
No 294
>PRK11823 DNA repair protein RadA; Provisional
Probab=98.15 E-value=5.2e-05 Score=58.63 Aligned_cols=39 Identities=26% Similarity=0.193 Sum_probs=31.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++.|.||+||||++.+++..+...+.++.+++.++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 468999999999999999999987654566666666543
No 295
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.15 E-value=7.1e-05 Score=60.00 Aligned_cols=28 Identities=29% Similarity=0.329 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.|++.+.+.
T Consensus 38 pHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 38 HHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4678999999999999999999999863
No 296
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=98.14 E-value=1.5e-05 Score=60.73 Aligned_cols=31 Identities=32% Similarity=0.427 Sum_probs=26.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+.-...|+|+|.+|||||||++.|++.++..
T Consensus 216 ~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~ 246 (399)
T PRK08099 216 PFFVRTVAILGGESSGKSTLVNKLANIFNTT 246 (399)
T ss_pred hCCCcEEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 4445689999999999999999999998654
No 297
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=98.14 E-value=6e-05 Score=58.36 Aligned_cols=39 Identities=21% Similarity=0.271 Sum_probs=31.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~ 46 (143)
-++++|+||+|||++++.++..+... +.++..++.+++.
T Consensus 150 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~ 190 (450)
T PRK00149 150 PLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFT 190 (450)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHH
Confidence 48999999999999999999888654 4556666766553
No 298
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.13 E-value=6.6e-05 Score=58.90 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=25.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+..++|+|+||+||||+|+.+++.+.+.
T Consensus 35 l~ha~Lf~GppGtGKTTlA~~lA~~l~c~ 63 (504)
T PRK14963 35 LGHAYLFSGPRGVGKTTTARLIAMAVNCS 63 (504)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 35678999999999999999999998754
No 299
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=98.13 E-value=6.6e-05 Score=51.28 Aligned_cols=26 Identities=35% Similarity=0.469 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+.++.|+||+||||++..++..+-
T Consensus 32 g~l~~i~g~~g~GKT~~~~~l~~~~~ 57 (193)
T PF13481_consen 32 GELTLIAGPPGSGKTTLALQLAAALA 57 (193)
T ss_dssp TSEEEEEECSTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999997663
No 300
>KOG0730|consensus
Probab=98.12 E-value=2.9e-05 Score=61.54 Aligned_cols=31 Identities=35% Similarity=0.343 Sum_probs=26.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.|+-|++.|||||||||+|+.++..-+..++
T Consensus 467 ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 467 PPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred CCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 4678999999999999999999988765554
No 301
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.12 E-value=5.7e-05 Score=53.40 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=31.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..++++.|.|||||||++.+++...-..+.++..++.+.
T Consensus 24 ~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~ 63 (234)
T PRK06067 24 FPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTEN 63 (234)
T ss_pred CCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCC
Confidence 3578999999999999999999765433567777776653
No 302
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.12 E-value=3e-06 Score=56.01 Aligned_cols=37 Identities=24% Similarity=0.473 Sum_probs=31.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+|.++|++||||||++..++..+...+.+..++..|.
T Consensus 1 ~i~~~G~~GsGKTt~~~~l~~~~~~~g~~v~ii~~D~ 37 (148)
T cd03114 1 VIGITGVPGAGKSTLIDALITALRARGKRVAVLAIDP 37 (148)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeCC
Confidence 3789999999999999999999877788887777663
No 303
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=98.11 E-value=4.3e-06 Score=53.01 Aligned_cols=36 Identities=28% Similarity=0.388 Sum_probs=31.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
|++.|.+|+||||++..++..+...+.++.++..|.
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g~~V~~id~D~ 37 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKGKPVLAIDADP 37 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCc
Confidence 789999999999999999999877778787787764
No 304
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=9.2e-05 Score=59.29 Aligned_cols=29 Identities=21% Similarity=0.265 Sum_probs=25.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..++|+|++|+||||+|+.|++.+.+.+
T Consensus 38 ~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~ 66 (618)
T PRK14951 38 HHAYLFTGTRGVGKTTVSRILAKSLNCQG 66 (618)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 56789999999999999999999998643
No 305
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.11 E-value=2.4e-06 Score=53.37 Aligned_cols=23 Identities=35% Similarity=0.557 Sum_probs=20.9
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|+|.|+||+|||++|+.|++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998764
No 306
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00011 Score=58.58 Aligned_cols=28 Identities=29% Similarity=0.237 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 35 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 62 (584)
T PRK14952 35 NHAYLFSGPRGCGKTSSARILARSLNCA 62 (584)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 5678999999999999999999998764
No 307
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.10 E-value=0.00019 Score=50.44 Aligned_cols=41 Identities=20% Similarity=0.222 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYRRK 48 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~~~ 48 (143)
.+++.|++|+|||+|.+.++..+.. .+.++..++.+++...
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 4789999999999999999987743 4666777777765443
No 308
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.10 E-value=7.6e-05 Score=59.98 Aligned_cols=28 Identities=25% Similarity=0.262 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~hAyLf~Gp~GvGKTTlAr~lAk~L~c~ 65 (647)
T PRK07994 38 HHAYLFSGTRGVGKTTIARLLAKGLNCE 65 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhhhc
Confidence 4568999999999999999999999763
No 309
>KOG0733|consensus
Probab=98.10 E-value=2.6e-05 Score=61.64 Aligned_cols=32 Identities=34% Similarity=0.308 Sum_probs=27.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
+|.-|++-||||||||.||++++..++.+++.
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence 45679999999999999999999998776553
No 310
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=98.10 E-value=2.8e-05 Score=60.21 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=30.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|.||+||||++.+++..+...+.++.+++.+
T Consensus 94 GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~E 131 (454)
T TIGR00416 94 GSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGE 131 (454)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECc
Confidence 46899999999999999999988775555566666654
No 311
>PF13245 AAA_19: Part of AAA domain
Probab=98.09 E-value=4.5e-06 Score=48.97 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=18.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..+.++.|+|||||||++..+...+
T Consensus 10 ~~~~vv~g~pGtGKT~~~~~~i~~l 34 (76)
T PF13245_consen 10 SPLFVVQGPPGTGKTTTLAARIAEL 34 (76)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578889999999995555555443
No 312
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=98.09 E-value=3.5e-06 Score=61.06 Aligned_cols=36 Identities=17% Similarity=0.349 Sum_probs=28.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+|.++|.+||||||+++.|+..++..+ ..++..|++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~--~~vi~~Dd~ 36 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDL--VTVICLDDY 36 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCc--eEEEECccc
Confidence 478999999999999999998876432 346677765
No 313
>PRK06921 hypothetical protein; Provisional
Probab=98.09 E-value=7.5e-05 Score=54.02 Aligned_cols=39 Identities=26% Similarity=0.268 Sum_probs=31.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~ 44 (143)
...++|.|+||+|||+++..++..+... +..+..+...+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~ 156 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVE 156 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHH
Confidence 4579999999999999999999988665 66666665543
No 314
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=98.08 E-value=2.8e-06 Score=64.79 Aligned_cols=29 Identities=21% Similarity=0.423 Sum_probs=25.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.-|++.|+||+||||+|++||+.+...|.
T Consensus 264 eGILIAG~PGaGKsTFaqAlAefy~~~Gk 292 (604)
T COG1855 264 EGILIAGAPGAGKSTFAQALAEFYASQGK 292 (604)
T ss_pred cceEEecCCCCChhHHHHHHHHHHHhcCc
Confidence 35899999999999999999999977765
No 315
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=98.08 E-value=3e-06 Score=62.61 Aligned_cols=29 Identities=21% Similarity=0.348 Sum_probs=25.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.-|++.|+||+||||+++.|++.+++..+
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 35999999999999999999999987654
No 316
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.08 E-value=3.4e-05 Score=57.40 Aligned_cols=31 Identities=35% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
+|+-|++.||||+|||-+|+++|....+.++
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI 214 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFI 214 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEE
Confidence 5778999999999999999999988766554
No 317
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=98.08 E-value=2.2e-05 Score=61.38 Aligned_cols=29 Identities=34% Similarity=0.462 Sum_probs=25.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-++|+|+||+|||++|+.+++.+...
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 35679999999999999999999988654
No 318
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.08 E-value=0.00012 Score=58.49 Aligned_cols=28 Identities=21% Similarity=0.272 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|.|+||+||||+|+.|++.+.+.
T Consensus 38 ~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 38 APAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 4579999999999999999999998753
No 319
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=98.07 E-value=5.2e-06 Score=56.75 Aligned_cols=41 Identities=34% Similarity=0.380 Sum_probs=33.3
Q ss_pred CCC-eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTP-LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~-~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+.| ..|-+.|+||||||++...+.+.+... ++..++..|-+
T Consensus 10 ~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~-~~~aVI~~Di~ 51 (202)
T COG0378 10 NRPMLRIGVGGPPGSGKTALIEKTLRALKDE-YKIAVITGDIY 51 (202)
T ss_pred cCceEEEEecCCCCcCHHHHHHHHHHHHHhh-CCeEEEeceee
Confidence 345 689999999999999999999998665 77777766544
No 320
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=98.07 E-value=2.1e-05 Score=51.68 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.+..|++.|.+||||||+.+.+..
T Consensus 2 ~~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 2 KSGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred ceeEEEEECCCCCCHHHHHHHHhC
Confidence 356799999999999999999864
No 321
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.06 E-value=0.0001 Score=58.91 Aligned_cols=28 Identities=25% Similarity=0.245 Sum_probs=24.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 38 AHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4578999999999999999999998753
No 322
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.05 E-value=0.00015 Score=58.53 Aligned_cols=28 Identities=29% Similarity=0.323 Sum_probs=25.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.|++.+.+.
T Consensus 38 ~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 38 HHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5689999999999999999999998764
No 323
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.05 E-value=7.1e-06 Score=56.74 Aligned_cols=26 Identities=19% Similarity=0.284 Sum_probs=23.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
-+|+++|++||||||+...|...+..
T Consensus 2 GlilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 2 GLVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 47999999999999999999888753
No 324
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=98.04 E-value=0.00014 Score=56.18 Aligned_cols=40 Identities=18% Similarity=0.251 Sum_probs=30.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYRR 47 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~~ 47 (143)
-++++|+||+|||+++..++..+... +.++..++.+++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~ 173 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 48999999999999999999887443 34555666665443
No 325
>TIGR03707 PPK2_P_aer polyphosphate kinase 2, PA0141 family. Members of this protein family are designated polyphosphate kinase 2 (PPK2) after the characterized protein in Pseudomonas aeruginosa. This family comprises one of three well-separated clades in the larger family described by Pfam model pfam03976. PA0141 from this family has been shown capable of operating in reverse, with GDP preferred (over ADP) as a substrate, producing GTP (or ATP) by transfer of a phosphate residue from polyphosphate. Most species with a member of this family also encode a polyphosphate kinase 1 (PPK1).
Probab=98.04 E-value=0.00015 Score=51.24 Aligned_cols=110 Identities=15% Similarity=0.143 Sum_probs=72.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.|.+|+|-|..||||+.+.+.|.+.+.-.++++..+..+.-.+. . ...+...+..
T Consensus 30 ~~vlIv~eG~DaAGKg~~I~~l~~~lDPRg~~v~~~~~pt~eE~----------------~---------~p~lwRfw~~ 84 (230)
T TIGR03707 30 ARVVIVFEGRDAAGKGGTIKRITEHLNPRGARVVALPKPSDRER----------------T---------QWYFQRYVQH 84 (230)
T ss_pred CCEEEEEeCCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH----------------c---------ChHHHHHHHh
Confidence 47899999999999999999999998777776666533211111 0 1113334445
Q ss_pred HhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+-..|.+.|+|.+-+..-. -..+.+ ++...|+.++=+++..+.++-.+|..+|..
T Consensus 85 lP~~G~i~IF~rSwY~~~lv~rv~~~~~~~~~~~~~~~I~~FEr-~L~~~G~~IlKfflhIsk~eQ~kRl~~r~~ 158 (230)
T TIGR03707 85 LPAAGEIVLFDRSWYNRAGVERVMGFCTDEEYEEFLRQVPEFER-MLVRDGIHLFKYWLSVSREEQLRRFKARID 158 (230)
T ss_pred CCCCCeEEEEeCchhhhHHHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 5445777777766533211 112344 555678988888888999998888877653
No 326
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=98.04 E-value=0.00023 Score=49.88 Aligned_cols=29 Identities=21% Similarity=0.187 Sum_probs=24.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
..++.+.|+||||||+++..++......+
T Consensus 19 g~v~~I~G~~GsGKT~l~~~ia~~~~~~~ 47 (226)
T cd01393 19 GRITEIFGEFGSGKTQLCLQLAVEAQLPG 47 (226)
T ss_pred CcEEEEeCCCCCChhHHHHHHHHHhhccc
Confidence 46899999999999999999987654333
No 327
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=98.04 E-value=3.8e-06 Score=63.84 Aligned_cols=29 Identities=38% Similarity=0.452 Sum_probs=25.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+++|+||+|||++|+.++..++..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~ 192 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNAT 192 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCC
Confidence 46679999999999999999999987654
No 328
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=98.04 E-value=3.7e-05 Score=56.42 Aligned_cols=36 Identities=31% Similarity=0.481 Sum_probs=30.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
++.+|+++||.|||||-+|-.|+++++. .++|.|..
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~-----eIIs~DSm 37 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGG-----EIISLDSM 37 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCC-----cEEecchh
Confidence 5789999999999999999999999764 56666653
No 329
>PRK04328 hypothetical protein; Provisional
Probab=98.04 E-value=6.3e-05 Score=53.86 Aligned_cols=39 Identities=18% Similarity=0.203 Sum_probs=30.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+..++++.|+||||||++|.+++...-..+.++.+++.+
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~e 60 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALE 60 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEee
Confidence 356899999999999999999886543446777777654
No 330
>PRK14489 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobA/MobB; Provisional
Probab=98.04 E-value=6.1e-06 Score=62.24 Aligned_cols=39 Identities=28% Similarity=0.345 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
++.+|.++|.|||||||+...|...|...|+++.++..+
T Consensus 204 ~~~~~~~~g~~~~GKtt~~~~l~~~l~~~g~~v~~iKh~ 242 (366)
T PRK14489 204 APPLLGVVGYSGTGKTTLLEKLIPELIARGYRIGLIKHS 242 (366)
T ss_pred CccEEEEecCCCCCHHHHHHHHHHHHHHcCCEEEEEEEC
Confidence 456999999999999999999999999889988888654
No 331
>PF05729 NACHT: NACHT domain
Probab=98.04 E-value=5.1e-06 Score=55.04 Aligned_cols=27 Identities=33% Similarity=0.505 Sum_probs=23.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
++++.|.||+||||+++.++..+....
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 789999999999999999998875544
No 332
>PLN03025 replication factor C subunit; Provisional
Probab=98.04 E-value=5.6e-05 Score=55.95 Aligned_cols=25 Identities=32% Similarity=0.305 Sum_probs=22.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.++|.|+||+||||+|..+++.+..
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~ 60 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLG 60 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4789999999999999999998743
No 333
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.04 E-value=9e-05 Score=55.16 Aligned_cols=112 Identities=13% Similarity=0.146 Sum_probs=58.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+..++|+|++|+||+|+|..+++.+.+....... .++.=..+ .+.....+|++.....+... .+....+.++.+.
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~---~i~id~iR~l~~~ 97 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGG-ACGSCKGCQLLRAGSHPDNFVLEPEEADK---TIKVDQVRELVSF 97 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCEEEEeccCCCC---CCCHHHHHHHHHH
Confidence 5679999999999999999999999764321110 11110011 12222334443221111000 0001112222222
Q ss_pred H-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEE
Q psy2713 85 L-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFV 122 (143)
Q Consensus 85 l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v 122 (143)
+ ..+..++|+|.. ..+......+.+ .+++..-...+|
T Consensus 98 ~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK-~LEEPp~~~~fi 140 (328)
T PRK05707 98 VVQTAQLGGRKVVLIEPAEAMNRNAANALLK-SLEEPSGDTVLL 140 (328)
T ss_pred HhhccccCCCeEEEECChhhCCHHHHHHHHH-HHhCCCCCeEEE
Confidence 2 234566777665 356677778888 888865555555
No 334
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.04 E-value=9e-06 Score=58.02 Aligned_cols=41 Identities=20% Similarity=0.255 Sum_probs=35.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
..++|.|.||+|||+++..++..+...+..+.+++..++..
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~ 140 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMS 140 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHH
Confidence 47899999999999999999999977788887777766543
No 335
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=98.03 E-value=3.8e-05 Score=57.71 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.|..++|.|+||+|||.+|+.+++.++.. ...++..+
T Consensus 147 ~PlgllL~GPPGcGKTllAraiA~elg~~---~i~vsa~e 183 (413)
T PLN00020 147 VPLILGIWGGKGQGKSFQCELVFKKMGIE---PIVMSAGE 183 (413)
T ss_pred CCeEEEeeCCCCCCHHHHHHHHHHHcCCC---eEEEEHHH
Confidence 47889999999999999999999998653 34555543
No 336
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=98.03 E-value=9.5e-05 Score=58.95 Aligned_cols=39 Identities=21% Similarity=0.333 Sum_probs=31.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~ 46 (143)
.++|+|.+|+|||+|+..++..+.. .+.++..++.+++.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~ 356 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFT 356 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 3899999999999999999988743 46677777776654
No 337
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.02 E-value=1e-05 Score=56.89 Aligned_cols=40 Identities=13% Similarity=0.186 Sum_probs=32.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
...++++|+||+|||++|+.+++.....+.....++....
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~ 81 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASP 81 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHh
Confidence 3578999999999999999999887555666677766543
No 338
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=0.00015 Score=57.24 Aligned_cols=27 Identities=30% Similarity=0.326 Sum_probs=24.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+||||+|+.+++.+.+
T Consensus 38 ~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 38 HHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 467899999999999999999999875
No 339
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.02 E-value=9.7e-06 Score=51.86 Aligned_cols=38 Identities=24% Similarity=0.341 Sum_probs=31.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
+.+|.++-+-|+||+|||.+++.||+.+=..|.++..+
T Consensus 50 p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V 87 (127)
T PF06309_consen 50 PRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFV 87 (127)
T ss_pred CCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCce
Confidence 56788999999999999999999999864556666555
No 340
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=98.02 E-value=6.4e-06 Score=62.95 Aligned_cols=31 Identities=32% Similarity=0.365 Sum_probs=26.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
..-++|.|+|||||||+|+.|++.++..++.
T Consensus 108 ~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 108 KSNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 3569999999999999999999998766543
No 341
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=98.02 E-value=0.00013 Score=47.93 Aligned_cols=93 Identities=15% Similarity=0.159 Sum_probs=51.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
..++.+.|++||||||+.+.|+..+. ....-+..+... ... |-+.-+.+.. +. +. +...+
T Consensus 26 Ge~~~i~G~nGsGKStLl~~l~G~~~---~~~G~i~~~~~~--------~i~-~~~~lS~G~~--~r-----v~-laral 85 (144)
T cd03221 26 GDRIGLVGRNGAGKSTLLKLIAGELE---PDEGIVTWGSTV--------KIG-YFEQLSGGEK--MR-----LA-LAKLL 85 (144)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCCC---CCceEEEECCeE--------EEE-EEccCCHHHH--HH-----HH-HHHHH
Confidence 45889999999999999999976542 112222222110 001 1010111111 11 11 11222
Q ss_pred hcCCeEEEEeCCc--hhHHHHHHHHHHHHhhcCCEE
Q psy2713 86 KNDGEVAIIDGTT--ATMEKRKQIHDYFARKMGFKV 119 (143)
Q Consensus 86 ~~~~~~vi~d~~~--~~~~~r~~~~~~~~~~~~~~~ 119 (143)
......+++|-++ .+...++.+.+ .+++.+..+
T Consensus 86 ~~~p~illlDEP~~~LD~~~~~~l~~-~l~~~~~ti 120 (144)
T cd03221 86 LENPNLLLLDEPTNHLDLESIEALEE-ALKEYPGTV 120 (144)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHH-HHHHcCCEE
Confidence 2356789999875 66778888888 888765433
No 342
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=98.02 E-value=4.8e-06 Score=62.68 Aligned_cols=31 Identities=35% Similarity=0.351 Sum_probs=26.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.|.-+++.|+||+|||++|+.+++.++..++
T Consensus 155 ~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 155 PPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 3567999999999999999999998765543
No 343
>KOG0781|consensus
Probab=98.01 E-value=3.2e-05 Score=59.43 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=43.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE 51 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~ 51 (143)
..|++|.|||..|+||||--.+|+-+|....+++-+..+|.+|....+
T Consensus 376 krPYVi~fvGVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsGAvE 423 (587)
T KOG0781|consen 376 KRPYVISFVGVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSGAVE 423 (587)
T ss_pred CCCeEEEEEeecCccccchHHHHHHHHHhCCceEEEEeccchhhhHHH
Confidence 468999999999999999999999999988999999999999887544
No 344
>CHL00195 ycf46 Ycf46; Provisional
Probab=98.01 E-value=5.2e-06 Score=64.66 Aligned_cols=32 Identities=25% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
.|.-|++.|+||+|||++|+.++..++...+.
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~ 289 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLR 289 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999998765443
No 345
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.01 E-value=5.7e-06 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.408 Sum_probs=21.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+..++.++|||||||||+.+.|..
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRclN~ 50 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCLNG 50 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHC
Confidence 346899999999999999999973
No 346
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=98.01 E-value=5.1e-05 Score=53.34 Aligned_cols=40 Identities=28% Similarity=0.205 Sum_probs=29.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~ 44 (143)
+..++++.|+||||||+++.+++...-.. +.++..++.+.
T Consensus 18 ~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 18 KGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 34689999999999999999988554344 67777776643
No 347
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=98.01 E-value=0.00019 Score=51.49 Aligned_cols=39 Identities=18% Similarity=0.210 Sum_probs=32.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~ 44 (143)
..++++.|.||+|||+++..++..+... +.++.+|+.+.
T Consensus 19 g~L~vi~a~pg~GKT~~~l~ia~~~a~~~~~~vly~SlEm 58 (259)
T PF03796_consen 19 GELTVIAARPGVGKTAFALQIALNAALNGGYPVLYFSLEM 58 (259)
T ss_dssp T-EEEEEESTTSSHHHHHHHHHHHHHHTTSSEEEEEESSS
T ss_pred CcEEEEEecccCCchHHHHHHHHHHHHhcCCeEEEEcCCC
Confidence 3599999999999999999999877655 58888888753
No 348
>KOG0733|consensus
Probab=98.00 E-value=2.5e-05 Score=61.67 Aligned_cols=30 Identities=33% Similarity=0.309 Sum_probs=25.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
|.-|+|+||||||||-+|+++|..-+..++
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFi 574 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFI 574 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceE
Confidence 667999999999999999999987655443
No 349
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=98.00 E-value=8.9e-06 Score=52.01 Aligned_cols=28 Identities=32% Similarity=0.306 Sum_probs=24.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..+|++.|.-||||||+++.+++.++.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~ 41 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGI 41 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 3469999999999999999999999854
No 350
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00021 Score=54.57 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+.+.
T Consensus 38 ~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5579999999999999999999999764
No 351
>KOG0738|consensus
Probab=97.99 E-value=9.1e-05 Score=55.80 Aligned_cols=28 Identities=36% Similarity=0.332 Sum_probs=23.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+-|+|.||||+|||-||++++..-+..+
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~tTF 273 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECGTTF 273 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhcCeE
Confidence 3589999999999999999998866443
No 352
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=97.99 E-value=8.6e-06 Score=49.00 Aligned_cols=34 Identities=26% Similarity=0.348 Sum_probs=28.7
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+++++|.+|+||||++..++..+...+.+...+.
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 4788999999999999999999977777666553
No 353
>CHL00176 ftsH cell division protein; Validated
Probab=97.99 E-value=0.00023 Score=57.36 Aligned_cols=30 Identities=37% Similarity=0.401 Sum_probs=25.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
.|.-+++.|+||+|||++|+.++...+...
T Consensus 215 ~p~gVLL~GPpGTGKT~LAralA~e~~~p~ 244 (638)
T CHL00176 215 IPKGVLLVGPPGTGKTLLAKAIAGEAEVPF 244 (638)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 356799999999999999999998875443
No 354
>PRK14494 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/FeS domain-containing protein protein; Provisional
Probab=97.99 E-value=9.7e-06 Score=57.25 Aligned_cols=35 Identities=20% Similarity=0.303 Sum_probs=32.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
.+|.++|.+||||||++..|+++|...++++.++.
T Consensus 2 ~vi~ivG~~gsGKTtl~~~l~~~L~~~G~~V~viK 36 (229)
T PRK14494 2 RAIGVIGFKDSGKTTLIEKILKNLKERGYRVATAK 36 (229)
T ss_pred eEEEEECCCCChHHHHHHHHHHHHHhCCCeEEEEE
Confidence 47999999999999999999999988888888884
No 355
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.99 E-value=0.00024 Score=55.53 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=24.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|++|+||||+|+.+++.+.+
T Consensus 38 ~hayLf~Gp~G~GKTtlAr~lAk~L~c 64 (486)
T PRK14953 38 SHAYIFAGPRGTGKTTIARILAKVLNC 64 (486)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 457899999999999999999999875
No 356
>KOG1969|consensus
Probab=97.99 E-value=6.9e-06 Score=65.78 Aligned_cols=42 Identities=26% Similarity=0.309 Sum_probs=33.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+++.++.++||+||-||||+|.-+|+.. |+++.-+++.+-|.
T Consensus 323 RP~kKilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt 364 (877)
T KOG1969|consen 323 RPPKKILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERT 364 (877)
T ss_pred CCccceEEeecCCCCChhHHHHHHHHhc---CceEEEeccccccc
Confidence 4566899999999999999999999875 56666777655443
No 357
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00021 Score=58.01 Aligned_cols=28 Identities=21% Similarity=0.254 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 40 ~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 40 SHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 5678999999999999999999998764
No 358
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00021 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|.|++|+||||+|+.|++.|.+.
T Consensus 37 ~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 37 NHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 4568999999999999999999999764
No 359
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.98 E-value=6.7e-06 Score=59.07 Aligned_cols=27 Identities=26% Similarity=0.283 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.+++++|++||||||+++.++..+..
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~ 69 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQ 69 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCC
Confidence 458999999999999999999988763
No 360
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=97.98 E-value=5.8e-06 Score=62.96 Aligned_cols=30 Identities=40% Similarity=0.411 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
.|.-+++.|+||+|||++|+.++..++...
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~f 207 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATF 207 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCE
Confidence 467899999999999999999998876543
No 361
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.98 E-value=0.00044 Score=48.54 Aligned_cols=39 Identities=18% Similarity=0.166 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++.|.||+|||++|.+++...-..+..+..++.+.
T Consensus 16 g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~ 54 (224)
T TIGR03880 16 GHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE 54 (224)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 468999999999999999999866434466677776643
No 362
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=97.97 E-value=0.00033 Score=52.31 Aligned_cols=28 Identities=21% Similarity=0.275 Sum_probs=24.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+.+.
T Consensus 36 ~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 36 AHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999998643
No 363
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=97.97 E-value=8.5e-06 Score=59.73 Aligned_cols=27 Identities=33% Similarity=0.354 Sum_probs=23.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++++|+||+||||+|+.+++.++.
T Consensus 30 ~~~~ll~Gp~G~GKT~la~~ia~~~~~ 56 (305)
T TIGR00635 30 LDHLLLYGPPGLGKTTLAHIIANEMGV 56 (305)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 456899999999999999999998753
No 364
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=97.97 E-value=0.00021 Score=48.83 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=24.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|.|++|+||||+|+.+++.+..
T Consensus 14 ~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 14 AHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 578999999999999999999999864
No 365
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.97 E-value=9.9e-06 Score=62.89 Aligned_cols=44 Identities=27% Similarity=0.298 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc-cCC-CCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTD-HKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~-~~~~~~~~d~~~~~ 48 (143)
++.+++|+|++||||||.+.+|+..+. ..+ .++.++..|.++..
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~Rig 300 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIG 300 (484)
T ss_pred CCcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchh
Confidence 357999999999999999999998773 333 46778888877544
No 366
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.96 E-value=0.00019 Score=54.87 Aligned_cols=39 Identities=21% Similarity=0.191 Sum_probs=30.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~~ 46 (143)
.++++|+||+|||++++.++..+... +..+..++.+++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~ 178 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFT 178 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHH
Confidence 58899999999999999999887543 4556666766544
No 367
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=97.96 E-value=1.2e-05 Score=54.69 Aligned_cols=34 Identities=24% Similarity=0.361 Sum_probs=27.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
+++++|..||||||+.+.+.+ ....+.+..++..
T Consensus 2 v~ii~GfLGsGKTTli~~ll~-~~~~~~~~~vI~n 35 (178)
T PF02492_consen 2 VIIITGFLGSGKTTLINHLLK-RNRQGERVAVIVN 35 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHH-HHTTTS-EEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHH-HhcCCceeEEEEc
Confidence 789999999999999999997 4455677777644
No 368
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.96 E-value=0.00026 Score=56.33 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 38 ANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 5679999999999999999999998753
No 369
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=97.96 E-value=0.00042 Score=46.20 Aligned_cols=31 Identities=32% Similarity=0.428 Sum_probs=26.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
|.=.+.|.+.|+-.||||||+++|+..++..
T Consensus 5 p~F~K~VailG~ESsGKStLv~kLA~~fnt~ 35 (187)
T COG3172 5 PFFVKTVAILGGESSGKSTLVNKLANIFNTT 35 (187)
T ss_pred hhhheeeeeecCcccChHHHHHHHHHHhCCC
Confidence 3334689999999999999999999998753
No 370
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.96 E-value=8.1e-06 Score=55.16 Aligned_cols=30 Identities=30% Similarity=0.255 Sum_probs=20.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..+.++++.|++|+||||+.+.+.+.+...
T Consensus 22 ~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 22 GSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp -----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 346899999999999999999999877544
No 371
>TIGR03708 poly_P_AMP_trns polyphosphate:AMP phosphotransferase. Members of this protein family contain a domain duplication. The characterized member from Acinetobacter johnsonii is polyphosphate:AMP phosphotransferase (PAP), which can transfer the terminal phosphate from poly(P) to AMP, yielding ADP. In the opposite direction, this enzyme can synthesize poly(P). Each domain of this protein family is homologous to polyphosphate kinase, an enzyme that can run in the forward direction to extend a polyphosphate chain with a new terminal phosphate from ATP, or in reverse to make ATP (or GTP) from ADP (or GDP).
Probab=97.95 E-value=0.00024 Score=55.40 Aligned_cols=111 Identities=14% Similarity=0.126 Sum_probs=73.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
..|.+|+|-|..||||++..+.|.+.+.-.|+++..+..+.-.+. ..+ .+...+.
T Consensus 38 ~~~vlIv~eG~DaaGKg~~I~~l~~~ldprg~~v~~~~~P~~eE~------~~~-------------------flwRfw~ 92 (493)
T TIGR03708 38 GFPVIILIEGWDGAGKGETINLLNEWMDPRGIETHAFGRPSDEER------ERP-------------------PMWRFWR 92 (493)
T ss_pred CCeEEEEEeCCCCCChHHHHHHHHHHhCcCccEEEeCCCCCHHHh------cCc-------------------HHHHHHH
Confidence 357899999999999999999999999888887766644322111 011 1233334
Q ss_pred HHhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+-..|.++|+|-+-+..-. -..+.+ ++...|+.++=+++.++.++-.+|-..|..
T Consensus 93 ~lP~~G~I~IFdRSWY~~vlverv~g~~~~~~~~~~~~~I~~FE~-~L~~~G~~IlKffLhIsk~EQ~kRl~~r~~ 167 (493)
T TIGR03708 93 RLPPKGKIGIFFGSWYTRPLIERLEGRIDEAKLDSHIEDINRFER-MLADDGALILKFWLHLSKKQQKERLKKLEK 167 (493)
T ss_pred hCCCCCeEEEEcCcccchhhHHHhcCCCCHHHHHHHHHHHHHHHH-HHHHCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 44345677777665432211 112344 555668988888889999998888877753
No 372
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.95 E-value=0.00026 Score=52.14 Aligned_cols=27 Identities=26% Similarity=0.330 Sum_probs=23.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.|.+++++|+||+||||+++.+++.++
T Consensus 42 ~~~~lll~G~~G~GKT~la~~l~~~~~ 68 (316)
T PHA02544 42 IPNMLLHSPSPGTGKTTVAKALCNEVG 68 (316)
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 367888899999999999999998864
No 373
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.95 E-value=0.00044 Score=47.01 Aligned_cols=22 Identities=23% Similarity=0.431 Sum_probs=19.9
Q ss_pred CeEEEEEccCCCChhHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~ 27 (143)
..++.+.|++||||||+.+.+.
T Consensus 21 G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 21 NVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred CCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999999885
No 374
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.95 E-value=0.0002 Score=56.93 Aligned_cols=28 Identities=18% Similarity=0.188 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~hayLf~Gp~GtGKTt~Ak~lAkal~c~ 65 (559)
T PRK05563 38 SHAYLFSGPRGTGKTSAAKIFAKAVNCL 65 (559)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999998764
No 375
>TIGR03709 PPK2_rel_1 polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which.
Probab=97.95 E-value=0.00027 Score=50.98 Aligned_cols=110 Identities=15% Similarity=0.127 Sum_probs=72.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.|.+|+|-|..||||..+.+.|.+.+.-.++++..+....-.+. . ...+...+..
T Consensus 55 ~~vlIv~eG~DaAGKG~~I~~l~~~lDPRg~~V~s~~~Pt~eE~------~-------------------~p~lWRfw~~ 109 (264)
T TIGR03709 55 RSLLLVLQAMDAAGKDGTIRHVMSGVNPQGCQVTSFKAPSAEEL------D-------------------HDFLWRIHKA 109 (264)
T ss_pred CcEEEEEECCCCCCchHHHHHHHHhcCCCeeEEEeCCCCCHHHH------c-------------------CchHHHHHHh
Confidence 37899999999999999999999998777776666533221111 0 1113334444
Q ss_pred HhcCCeEEEEeCCchhHHH-------------------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATMEK-------------------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~-------------------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+-..|.+.|+|.+-+..-. -..+.. ++...|+.++=+++..+.++-.+|-..|..
T Consensus 110 lP~~G~i~IF~RSWY~~vl~~rv~g~~~~~~~~~~~~~I~~FEr-~L~~~G~~IiKffLhIsk~eQ~kRl~~r~~ 183 (264)
T TIGR03709 110 LPERGEIGIFNRSHYEDVLVVRVHGLIPKAIWERRYEDINDFER-YLTENGTTILKFFLHISKEEQKKRFLARLD 183 (264)
T ss_pred CCCCCeEEEEcCccccchhhhhhcCCCCHHHHHHHHHHHHHHHH-HHHHCCcEEEEEEEeCCHHHHHHHHHHHhc
Confidence 5445777777765432211 112333 555668888888888999998888877753
No 376
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=97.95 E-value=0.00017 Score=49.50 Aligned_cols=26 Identities=23% Similarity=0.162 Sum_probs=22.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+..+++++|+|||||||+.+.|....
T Consensus 27 ~Gef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 27 KGEFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhh
Confidence 44689999999999999999998654
No 377
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=7.7e-06 Score=65.38 Aligned_cols=34 Identities=26% Similarity=0.375 Sum_probs=29.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
.+..++.++||||+|||++++.+|+.++..+++.
T Consensus 348 ~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR~ 381 (782)
T COG0466 348 LKGPILCLVGPPGVGKTSLGKSIAKALGRKFVRI 381 (782)
T ss_pred CCCcEEEEECCCCCCchhHHHHHHHHhCCCEEEE
Confidence 3456899999999999999999999998876643
No 378
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.94 E-value=8.3e-06 Score=62.74 Aligned_cols=31 Identities=35% Similarity=0.366 Sum_probs=26.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.|..++|+|+||+|||++|+.++..+...++
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 4567899999999999999999998865543
No 379
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.94 E-value=7.2e-06 Score=61.64 Aligned_cols=28 Identities=29% Similarity=0.284 Sum_probs=24.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
-.+|.||||+||||+|+.|+..++..+.
T Consensus 50 SmIl~GPPG~GKTTlA~liA~~~~~~f~ 77 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAGTTNAAFE 77 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHHhhCCceE
Confidence 4689999999999999999998876543
No 380
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=97.94 E-value=1e-05 Score=60.10 Aligned_cols=27 Identities=33% Similarity=0.315 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++++|+||+||||+|+.+++.++.
T Consensus 51 ~~~~ll~GppG~GKT~la~~ia~~l~~ 77 (328)
T PRK00080 51 LDHVLLYGPPGLGKTTLANIIANEMGV 77 (328)
T ss_pred CCcEEEECCCCccHHHHHHHHHHHhCC
Confidence 457899999999999999999999864
No 381
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=97.93 E-value=0.0002 Score=53.81 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=24.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|++|+||||+|..+++.+.+
T Consensus 45 ~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 45 HHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred CeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 567999999999999999999999866
No 382
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=97.93 E-value=1.1e-05 Score=63.40 Aligned_cols=27 Identities=26% Similarity=0.365 Sum_probs=24.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..+++++|||||||||..+.|++.++.
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~ 71 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGF 71 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 469999999999999999999999864
No 383
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.93 E-value=0.00047 Score=49.08 Aligned_cols=29 Identities=31% Similarity=0.496 Sum_probs=25.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
|.-++++|++||||||+...|...+...+
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f 41 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKF 41 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccC
Confidence 45789999999999999999998876655
No 384
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=97.93 E-value=1.8e-05 Score=54.79 Aligned_cols=37 Identities=30% Similarity=0.398 Sum_probs=28.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
|..|.++|++||||||+.+.+.+.+... ....++..|
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~~~-~~~~~~~~d 37 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALRQK-YQLAVITND 37 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhCcC-CcEEEEeCC
Confidence 5689999999999999999999887542 334444444
No 385
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00024 Score=53.60 Aligned_cols=29 Identities=28% Similarity=0.304 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+..++|+|++|+||+|+|..+++.+.+.
T Consensus 40 l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~ 68 (365)
T PRK07471 40 LHHAWLIGGPQGIGKATLAYRMARFLLAT 68 (365)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHhCC
Confidence 35679999999999999999999998654
No 386
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=97.92 E-value=8.3e-06 Score=58.79 Aligned_cols=27 Identities=33% Similarity=0.341 Sum_probs=23.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.-|++.|+||+|||++|+.|++.++..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~ 48 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRP 48 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCC
Confidence 457899999999999999999877543
No 387
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=97.91 E-value=4.8e-05 Score=62.23 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=24.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|.|+||||||++|+.++..++..
T Consensus 486 ~~~giLL~GppGtGKT~lakalA~e~~~~ 514 (733)
T TIGR01243 486 PPKGVLLFGPPGTGKTLLAKAVATESGAN 514 (733)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 35568999999999999999999987643
No 388
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.91 E-value=0.00015 Score=55.53 Aligned_cols=44 Identities=27% Similarity=0.305 Sum_probs=32.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~ 48 (143)
+..+|.|+|++|+||||+...|+.++- .......++..|.++..
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig 235 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG 235 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh
Confidence 356899999999999999999997642 12245566777776654
No 389
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=97.90 E-value=4.3e-05 Score=51.18 Aligned_cols=21 Identities=38% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~ 29 (143)
|++.|++||||||+.+.+...
T Consensus 2 i~~~G~~~~GKTsl~~~l~~~ 22 (167)
T cd04161 2 LLTVGLDNAGKTTLVSALQGE 22 (167)
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999998754
No 390
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=97.90 E-value=3.4e-06 Score=54.16 Aligned_cols=27 Identities=44% Similarity=0.561 Sum_probs=19.7
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
|++.|+||+||||+++.|++.++..+.
T Consensus 2 vLleg~PG~GKT~la~~lA~~~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARSLGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHHTT--EE
T ss_pred EeeECCCccHHHHHHHHHHHHcCCcee
Confidence 789999999999999999999876543
No 391
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=97.90 E-value=2.1e-05 Score=56.49 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=37.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
..-+++.|+||+|||++|.+|+..+-..|+++-.+...++....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45789999999999999999999888778999999887765553
No 392
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.90 E-value=1.2e-05 Score=63.52 Aligned_cols=28 Identities=25% Similarity=0.396 Sum_probs=25.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..+++|+||||+||||||+.|++.+..
T Consensus 102 ~~~IL~LvGPpG~GKSsLa~~la~~le~ 129 (644)
T PRK15455 102 KKQILYLLGPVGGGKSSLAERLKSLMER 129 (644)
T ss_pred CCceEEEecCCCCCchHHHHHHHHHHHh
Confidence 4579999999999999999999998754
No 393
>PRK06851 hypothetical protein; Provisional
Probab=97.90 E-value=1.7e-05 Score=59.69 Aligned_cols=38 Identities=18% Similarity=0.264 Sum_probs=33.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
-..++++.|+||+||||+.+.+++.+...|+++.++.+
T Consensus 213 ~~~~~~i~G~pG~GKstl~~~i~~~a~~~G~~v~~~hC 250 (367)
T PRK06851 213 VKNRYFLKGRPGTGKSTMLKKIAKAAEERGFDVEVYHC 250 (367)
T ss_pred cceEEEEeCCCCCcHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 45789999999999999999999999888888877744
No 394
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=97.90 E-value=2.1e-05 Score=54.73 Aligned_cols=39 Identities=28% Similarity=0.309 Sum_probs=29.5
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
+..+.+|.++|++||||||+...+.+.+.. +.+..++..
T Consensus 19 ~~~~~~i~~~G~~gsGKTTli~~l~~~~~~-~~~v~v~~~ 57 (207)
T TIGR00073 19 KHGLVVLNFMSSPGSGKTTLIEKLIDNLKD-EVKIAVIEG 57 (207)
T ss_pred hcCcEEEEEECCCCCCHHHHHHHHHHHHhc-CCeEEEEEC
Confidence 345789999999999999999999987653 234444443
No 395
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=97.89 E-value=1e-05 Score=61.69 Aligned_cols=29 Identities=34% Similarity=0.429 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..|+|.|+||+|||++|+.|++.++..+
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf 144 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPF 144 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCe
Confidence 35799999999999999999998886443
No 396
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.89 E-value=7.3e-06 Score=66.20 Aligned_cols=34 Identities=24% Similarity=0.323 Sum_probs=29.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
.+|.+.|++||||||+|+.|+++|+..+++++.+
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~ 476 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGAL 476 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHh
Confidence 4799999999999999999999998877655443
No 397
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.89 E-value=1.2e-05 Score=50.09 Aligned_cols=21 Identities=38% Similarity=0.365 Sum_probs=19.7
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.++.+.|++||||||+++.+.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 689999999999999999986
No 398
>PF03976 PPK2: Polyphosphate kinase 2 (PPK2); InterPro: IPR022488 This presumed domain is found in one or two copies per protein. The domain is about 230 amino acids in length and has many conserved motifs, it has polyphosphate kinase activity [, ].; PDB: 3CZP_A 3RHF_D 3CZQ_B.
Probab=97.88 E-value=0.00011 Score=52.00 Aligned_cols=109 Identities=14% Similarity=0.139 Sum_probs=61.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
|.+|+|.|..||||+.+.+.|.+.+.-.++++..+....-.+. ..++ +...+..+
T Consensus 31 ~vlIl~eG~d~sGKg~~I~~l~~~lDPR~~~v~~~~~pt~eE~------~~p~-------------------lwRfw~~l 85 (228)
T PF03976_consen 31 PVLILFEGWDASGKGGTINRLIEWLDPRGFRVHAFGKPTDEEL------RRPF-------------------LWRFWRAL 85 (228)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHCCS-GGGEEEEE-SS--HHHH------TS-T-------------------THHHHTTS
T ss_pred cEEEEEeccccCCchHHHHHHHHhCCCCeeEEEeCCCCChhHc------CCCc-------------------HHHHHHhC
Confidence 5899999999999999999998887666666655533221111 0111 12222333
Q ss_pred hcCCeEEEEeCCchhHH-------------------HHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 86 KNDGEVAIIDGTTATME-------------------KRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~-------------------~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
-..|.++|+|.+-+..- .-..+.+ ++...|+.++=+++..+.++-.+|...|..
T Consensus 86 P~~G~I~if~rSWY~~~l~~rv~~~~~~~~~~~~~~~I~~FEr-~L~~~G~~IiKfflhIsk~eQ~kRl~~~~~ 158 (228)
T PF03976_consen 86 PARGQIGIFDRSWYEDVLVERVEGFIDEAEWERRLEEINRFER-MLADDGTLIIKFFLHISKKEQKKRLKEREE 158 (228)
T ss_dssp --TT-EEEEES-GGGGGTHHHHTTSSTHHHHHHHHHHHHHHHH-HHHHTTEEEEEEEEE--HHHHHHHHHHHHH
T ss_pred CCCCEEEEEecchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHHCCCeEEEEEEEeCHHHHHHHHHHHhc
Confidence 34577777776543221 1112333 444568888888888888888888777643
No 399
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.88 E-value=0.0003 Score=52.25 Aligned_cols=114 Identities=10% Similarity=0.103 Sum_probs=61.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
-+..++|.|++|+||+++|..+++.+.+....... .++.=..+ .+.....+|++-....++.. +....+.++.+
T Consensus 23 l~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~----I~id~iR~l~~ 97 (325)
T PRK06871 23 GHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQ-PCGQCHSCHLFQAGNHPDFHILEPIDNKD----IGVDQVREINE 97 (325)
T ss_pred cceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHhcCCCCCEEEEccccCCC----CCHHHHHHHHH
Confidence 35789999999999999999999999764322111 11110011 12223345553221111110 11111223333
Q ss_pred HH-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEe
Q psy2713 84 WL-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVEL 124 (143)
Q Consensus 84 ~l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~ 124 (143)
.+ .....++|+|.. ..+......+.+ .+++..-.++++-+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLK-tLEEPp~~~~fiL~ 143 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERLTEAAANALLK-TLEEPRPNTYFLLQ 143 (325)
T ss_pred HHhhccccCCceEEEEechhhhCHHHHHHHHH-HhcCCCCCeEEEEE
Confidence 22 223456767654 456667778888 88887666655544
No 400
>PHA03132 thymidine kinase; Provisional
Probab=97.88 E-value=0.00085 Score=53.30 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=23.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.++|+|-|.-||||||+++.|++.+
T Consensus 257 ~~fIv~EGidGsGKTTlik~L~e~l 281 (580)
T PHA03132 257 ACFLFLEGVMGVGKTTLLNHMRGIL 281 (580)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999999987
No 401
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00044 Score=55.55 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 38 ~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 38 GHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4569999999999999999999999774
No 402
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.88 E-value=0.00029 Score=56.67 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=24.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..++|+|++|+||||+|+.+++.+.+.
T Consensus 39 ~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 39 PAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred ceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 468999999999999999999999764
No 403
>PRK00089 era GTPase Era; Reviewed
Probab=97.88 E-value=7e-05 Score=54.65 Aligned_cols=24 Identities=42% Similarity=0.595 Sum_probs=21.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~ 27 (143)
++..+|.+.|.|||||||+.+.|.
T Consensus 3 ~~~g~V~iiG~pn~GKSTLin~L~ 26 (292)
T PRK00089 3 FKSGFVAIVGRPNVGKSTLLNALV 26 (292)
T ss_pred ceeEEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999999986
No 404
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=97.88 E-value=0.00025 Score=48.00 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=22.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.++.-|+++|.+|+||||+...|...
T Consensus 16 ~~~~~i~ivG~~~~GKStlin~l~~~ 41 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNR 41 (179)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 44567899999999999999998753
No 405
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.88 E-value=0.00019 Score=48.06 Aligned_cols=25 Identities=36% Similarity=0.352 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 26 GEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998554
No 406
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.87 E-value=0.00043 Score=48.32 Aligned_cols=27 Identities=33% Similarity=0.306 Sum_probs=22.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.++++.|++|+|||.+|-.|++.++..
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~p 28 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAP 28 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--E
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCC
Confidence 589999999999999999999998764
No 407
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00033 Score=52.14 Aligned_cols=29 Identities=24% Similarity=0.228 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+..++|.|++|+||||+|..+++.+.+.
T Consensus 20 ~~hA~Lf~G~~G~GK~~la~~~a~~llC~ 48 (325)
T PRK08699 20 RPNAWLFAGKKGIGKTAFARFAAQALLCE 48 (325)
T ss_pred cceEEEeECCCCCCHHHHHHHHHHHHcCC
Confidence 35679999999999999999999998764
No 408
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=97.87 E-value=0.00036 Score=53.24 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+..++|.|+||+||||+|+.+++.+.+.
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 35679999999999999999999998764
No 409
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.87 E-value=0.00037 Score=54.10 Aligned_cols=28 Identities=25% Similarity=0.362 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|+||+||||+|+.+++.+.+.
T Consensus 39 ~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 39 AHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 5678999999999999999999998654
No 410
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=97.86 E-value=1.4e-05 Score=52.84 Aligned_cols=23 Identities=30% Similarity=0.371 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+|+|+||+||||+|..|.++
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 56999999999999999998876
No 411
>PRK06851 hypothetical protein; Provisional
Probab=97.85 E-value=2.5e-05 Score=58.72 Aligned_cols=36 Identities=19% Similarity=0.268 Sum_probs=30.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
...+++|.|+||+||||+.+++.+.+...+.++..+
T Consensus 29 ~~~~~il~G~pGtGKStl~~~i~~~~~~~g~~Ve~~ 64 (367)
T PRK06851 29 ANRIFILKGGPGTGKSTLMKKIGEEFLEKGYDVEFL 64 (367)
T ss_pred cceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 457899999999999999999999886666665555
No 412
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=97.85 E-value=1.7e-05 Score=62.06 Aligned_cols=30 Identities=37% Similarity=0.379 Sum_probs=25.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
.|.-+++.|+||+|||++|+.|+..++...
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~ 116 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPF 116 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCe
Confidence 356799999999999999999998875543
No 413
>PRK08760 replicative DNA helicase; Provisional
Probab=97.84 E-value=0.00038 Score=54.33 Aligned_cols=39 Identities=28% Similarity=0.414 Sum_probs=31.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~ 44 (143)
..++++.|.||+|||+++..++...- ..+..+.+|+.+.
T Consensus 229 G~LivIaarPg~GKTafal~iA~~~a~~~g~~V~~fSlEM 268 (476)
T PRK08760 229 TDLIILAARPAMGKTTFALNIAEYAAIKSKKGVAVFSMEM 268 (476)
T ss_pred CceEEEEeCCCCChhHHHHHHHHHHHHhcCCceEEEeccC
Confidence 36899999999999999999997663 3366777887754
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.83 E-value=1.8e-05 Score=54.20 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=23.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...++++|++||||||+.+.|...+.
T Consensus 25 g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 25 RKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 46899999999999999999987764
No 415
>KOG0739|consensus
Probab=97.83 E-value=9.2e-05 Score=54.18 Aligned_cols=26 Identities=27% Similarity=0.313 Sum_probs=22.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.-|++.||||.|||+||+.++...+.
T Consensus 167 rgiLLyGPPGTGKSYLAKAVATEAnS 192 (439)
T KOG0739|consen 167 RGILLYGPPGTGKSYLAKAVATEANS 192 (439)
T ss_pred eeEEEeCCCCCcHHHHHHHHHhhcCC
Confidence 46999999999999999999977553
No 416
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=97.83 E-value=0.00061 Score=53.79 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|++|+||||+|+.+++.+.+
T Consensus 36 ~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 36 AHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred CeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 567899999999999999999999854
No 417
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=97.83 E-value=2.7e-05 Score=57.71 Aligned_cols=26 Identities=31% Similarity=0.358 Sum_probs=23.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+++.|+||+||||+|+.+++.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~ 63 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGD 63 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 57899999999999999999988643
No 418
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.82 E-value=3e-05 Score=56.94 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
...|+++|++||||||+++.|...+..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 357899999999999999999988754
No 419
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=97.82 E-value=2.9e-05 Score=43.54 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.+++|++||||||+..++.-.+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999987554
No 420
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=97.82 E-value=1.6e-05 Score=55.68 Aligned_cols=23 Identities=22% Similarity=0.379 Sum_probs=20.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++|.++|.|||||||+|+.+.+.
T Consensus 1 miI~i~G~~gsGKstva~~~~~~ 23 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFIIEN 23 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHHhc
Confidence 47999999999999999999765
No 421
>PRK04195 replication factor C large subunit; Provisional
Probab=97.81 E-value=1.7e-05 Score=61.84 Aligned_cols=27 Identities=41% Similarity=0.621 Sum_probs=24.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|.|+||+||||+|+.|++.+++
T Consensus 39 ~~~lLL~GppG~GKTtla~ala~el~~ 65 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLAHALANDYGW 65 (482)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 678999999999999999999998864
No 422
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.81 E-value=8.6e-05 Score=53.35 Aligned_cols=29 Identities=31% Similarity=0.433 Sum_probs=25.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|+.|++.|+||.|||.+|+.|+......
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp 178 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVP 178 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCc
Confidence 47899999999999999999999776543
No 423
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.81 E-value=0.00014 Score=48.18 Aligned_cols=24 Identities=33% Similarity=0.596 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..|+++|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 456899999999999999999643
No 424
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.80 E-value=2.6e-05 Score=56.82 Aligned_cols=37 Identities=30% Similarity=0.275 Sum_probs=28.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
.+-.+|.|+|.||||||||...+.+.+... ....++.
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l~~~-~~~~VI~ 138 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRLKDS-VPCAVIE 138 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHhccC-CCEEEEC
Confidence 345789999999999999999999887533 3445553
No 425
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.79 E-value=1.7e-05 Score=60.75 Aligned_cols=28 Identities=29% Similarity=0.265 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
...++|.|+||+||||+|+.+++.++..
T Consensus 36 ~~~ilL~GppGtGKTtLA~~ia~~~~~~ 63 (413)
T PRK13342 36 LSSMILWGPPGTGKTTLARIIAGATDAP 63 (413)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3467889999999999999999887543
No 426
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=97.79 E-value=0.00061 Score=52.52 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=31.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~ 44 (143)
..++++.|.||+|||+++..++...-. .+..+.+|+.+.
T Consensus 195 G~l~vi~g~pg~GKT~~~l~~a~~~a~~~g~~vl~~SlEm 234 (434)
T TIGR00665 195 SDLIILAARPSMGKTAFALNIAENAAIKEGKPVAFFSLEM 234 (434)
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHhCCCeEEEEeCcC
Confidence 358999999999999999999976533 466777777653
No 427
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=97.79 E-value=3.7e-05 Score=55.26 Aligned_cols=41 Identities=22% Similarity=0.183 Sum_probs=33.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+..+++++|.||||||+++.+++...-..|.++..++.+.-
T Consensus 22 ~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 22 RGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 34689999999999999999999776555888888876543
No 428
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=97.79 E-value=0.0001 Score=48.87 Aligned_cols=20 Identities=30% Similarity=0.443 Sum_probs=18.0
Q ss_pred EEEEccCCCChhHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~ 28 (143)
|+++|.+|||||||...+..
T Consensus 3 i~vvG~~~vGKTsli~~~~~ 22 (161)
T cd04124 3 IILLGDSAVGKSKLVERFLM 22 (161)
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78899999999999998864
No 429
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=97.79 E-value=0.001 Score=51.10 Aligned_cols=38 Identities=21% Similarity=0.297 Sum_probs=31.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d 43 (143)
..++++.|.||+|||+++..++..+. ..+.++.+|+.+
T Consensus 194 g~liviag~pg~GKT~~al~ia~~~a~~~g~~v~~fSlE 232 (421)
T TIGR03600 194 GDLIVIGARPSMGKTTLALNIAENVALREGKPVLFFSLE 232 (421)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 35899999999999999999997664 457777888765
No 430
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=97.79 E-value=0.00047 Score=50.70 Aligned_cols=29 Identities=31% Similarity=0.395 Sum_probs=25.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|..+++.|+||+||||.|..|++.+...
T Consensus 23 ~~halL~~Gp~G~Gktt~a~~lA~~l~~~ 51 (325)
T COG0470 23 LPHALLFYGPPGVGKTTAALALAKELLCE 51 (325)
T ss_pred CCceeeeeCCCCCCHHHHHHHHHHHHhCC
Confidence 45579999999999999999999998643
No 431
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.78 E-value=3.6e-05 Score=57.03 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..|+++|.+||||||+.+.|...+.
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~ 169 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIV 169 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHh
Confidence 45789999999999999999998764
No 432
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=97.78 E-value=2.7e-05 Score=54.55 Aligned_cols=39 Identities=23% Similarity=0.209 Sum_probs=34.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
+++++|.+|+||||++..++..+...+.++.+++.|.-.
T Consensus 1 ~~~~~g~~g~Gkt~~~~~la~~~a~~g~~~~l~~~d~~~ 39 (217)
T cd02035 1 VIFFTGKGGVGKTTIAAATAVRLAEEGKKVLLVSTDPAH 39 (217)
T ss_pred CEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEECCCCc
Confidence 478999999999999999999998888988888877433
No 433
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.78 E-value=0.00062 Score=45.60 Aligned_cols=115 Identities=17% Similarity=0.195 Sum_probs=59.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
|..++|.|++|+||+|+|..+++.+-........-..-.... .+......|++-........ .+..+.+.++.+++
T Consensus 19 ~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~-~~~~~~~~d~~~~~~~~~~~---~i~i~~ir~i~~~~ 94 (162)
T PF13177_consen 19 PHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR-RIEEGNHPDFIIIKPDKKKK---SIKIDQIREIIEFL 94 (162)
T ss_dssp -SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH-HHHTT-CTTEEEEETTTSSS---SBSHHHHHHHHHHC
T ss_pred ceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH-HHHhccCcceEEEecccccc---hhhHHHHHHHHHHH
Confidence 668999999999999999999999865443322100001111 11112233332211111000 00011233444444
Q ss_pred -----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEee
Q psy2713 86 -----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVELI 125 (143)
Q Consensus 86 -----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~~ 125 (143)
.....++|+|.. ..+.+....+.. .+++..-.+.+|-++
T Consensus 95 ~~~~~~~~~KviiI~~ad~l~~~a~NaLLK-~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 95 SLSPSEGKYKVIIIDEADKLTEEAQNALLK-TLEEPPENTYFILIT 139 (162)
T ss_dssp TSS-TTSSSEEEEEETGGGS-HHHHHHHHH-HHHSTTTTEEEEEEE
T ss_pred HHHHhcCCceEEEeehHhhhhHHHHHHHHH-HhcCCCCCEEEEEEE
Confidence 223567777665 567788888998 998876666555443
No 434
>KOG0734|consensus
Probab=97.77 E-value=7.2e-05 Score=58.45 Aligned_cols=26 Identities=42% Similarity=0.534 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|+-|+++||||.|||-||++++-..+
T Consensus 337 PKGVLLvGPPGTGKTlLARAvAGEA~ 362 (752)
T KOG0734|consen 337 PKGVLLVGPPGTGKTLLARAVAGEAG 362 (752)
T ss_pred CCceEEeCCCCCchhHHHHHhhcccC
Confidence 67899999999999999999985543
No 435
>PHA02244 ATPase-like protein
Probab=97.77 E-value=2e-05 Score=59.15 Aligned_cols=29 Identities=24% Similarity=0.246 Sum_probs=24.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.-|+|.|+||+|||++|+.|+..++...+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv 148 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFY 148 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35788999999999999999999876544
No 436
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=97.77 E-value=4.6e-05 Score=53.65 Aligned_cols=38 Identities=18% Similarity=0.228 Sum_probs=28.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|+|||||||++..++...-..+..+..++.+
T Consensus 20 G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 20 GFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46899999999999999999875443345566666553
No 437
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=97.77 E-value=3.5e-05 Score=58.18 Aligned_cols=26 Identities=19% Similarity=0.133 Sum_probs=23.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+++++|++||||||+.+.|.+.+..
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999988753
No 438
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=97.77 E-value=9.1e-05 Score=53.57 Aligned_cols=21 Identities=38% Similarity=0.632 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~ 28 (143)
.|.++|.||+|||||.+.|..
T Consensus 2 ~V~liG~pnvGKSTLln~L~~ 22 (270)
T TIGR00436 2 FVAILGRPNVGKSTLLNQLHG 22 (270)
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 588999999999999999974
No 439
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=97.76 E-value=0.00018 Score=49.97 Aligned_cols=29 Identities=21% Similarity=0.147 Sum_probs=23.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.-|++.|++||||||+...+.+..-....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~ 34 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGY 34 (219)
T ss_pred EEEEEEcCCCccHHHHHHHHhcCcCcccC
Confidence 67999999999999999999876544333
No 440
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=97.76 E-value=0.00025 Score=46.06 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=19.1
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~ 29 (143)
-|+++|.|||||||+...+...
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~~ 23 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVDG 23 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998643
No 441
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.76 E-value=4.2e-05 Score=55.36 Aligned_cols=26 Identities=42% Similarity=0.510 Sum_probs=23.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
....+|.+.|++|+||||+|..+++.
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45689999999999999999999977
No 442
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00048 Score=50.86 Aligned_cols=28 Identities=21% Similarity=0.233 Sum_probs=25.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
-+..++|+|++|+||||+|+.+++.+.+
T Consensus 25 ~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 25 FSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred CCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3678999999999999999999998854
No 443
>PRK05636 replicative DNA helicase; Provisional
Probab=97.75 E-value=0.00069 Score=53.29 Aligned_cols=38 Identities=24% Similarity=0.356 Sum_probs=29.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d 43 (143)
..+|++.|.||+||||++..++...- ..+..+.+|+.+
T Consensus 265 G~Liiiaarpg~GKT~~al~~a~~~a~~~g~~v~~fSlE 303 (505)
T PRK05636 265 GQMIIVAARPGVGKSTLALDFMRSASIKHNKASVIFSLE 303 (505)
T ss_pred CceEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEee
Confidence 46899999999999999999987653 235666677664
No 444
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.75 E-value=0.00056 Score=51.63 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=23.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
.-++++|+||+||||+++.|++.+...+
T Consensus 134 QR~LIvG~pGtGKTTLl~~la~~i~~~~ 161 (380)
T PRK12608 134 QRGLIVAPPRAGKTVLLQQIAAAVAANH 161 (380)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 3468999999999999999999886543
No 445
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.75 E-value=0.0005 Score=53.32 Aligned_cols=41 Identities=27% Similarity=0.391 Sum_probs=31.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~~~~ 48 (143)
-++++|.+|+|||+|++.++..+. ..+.++..++.+++...
T Consensus 143 pl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 143 PLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARK 185 (450)
T ss_pred ceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHH
Confidence 488999999999999999998764 34566667776665433
No 446
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=97.75 E-value=5.1e-05 Score=49.85 Aligned_cols=38 Identities=32% Similarity=0.302 Sum_probs=30.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEeh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSV 42 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~ 42 (143)
+..+|++.|.=||||||+++.+++.++ ...+.+-.|+.
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~~~~V~SPTFtl 62 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGVDGNVKSPTFTL 62 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCCCCcccCCCeee
Confidence 457999999999999999999999997 34455555543
No 447
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=97.74 E-value=2.4e-05 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.504 Sum_probs=19.6
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~ 29 (143)
-|+++|++|||||||++.|...
T Consensus 3 rimliG~~g~GKTTL~q~L~~~ 24 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNGE 24 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcCC
Confidence 4889999999999999999753
No 448
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=3e-05 Score=56.98 Aligned_cols=29 Identities=31% Similarity=0.406 Sum_probs=25.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..|++.||.|||||-+|+.||+.|+.++
T Consensus 97 KSNILLiGPTGsGKTlLAqTLAk~LnVPF 125 (408)
T COG1219 97 KSNILLIGPTGSGKTLLAQTLAKILNVPF 125 (408)
T ss_pred eccEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45799999999999999999999987654
No 449
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.74 E-value=5.3e-05 Score=52.80 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=19.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.++.||||+||||++..+...+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999999888888777
No 450
>COG1341 Predicted GTPase or GTP-binding protein [General function prediction only]
Probab=97.74 E-value=4.4e-05 Score=57.48 Aligned_cols=40 Identities=25% Similarity=0.258 Sum_probs=35.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.+..++++|+..|||||++..|+.++...|.++.++.+|-
T Consensus 72 ~~~~vmvvG~vDSGKSTLt~~LaN~~l~rG~~v~iiDaDv 111 (398)
T COG1341 72 KVGVVMVVGPVDSGKSTLTTYLANKLLARGRKVAIIDADV 111 (398)
T ss_pred CCcEEEEECCcCcCHHHHHHHHHHHHhhcCceEEEEeCCC
Confidence 4578999999999999999999999998898888887774
No 451
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=2.9e-05 Score=57.53 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=30.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.|+.|+|+||.|+|||-+|+.|++..+.+++++.
T Consensus 49 ~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVE 82 (444)
T COG1220 49 TPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVE 82 (444)
T ss_pred CccceEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 5889999999999999999999999988876553
No 452
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=97.73 E-value=2.7e-05 Score=55.01 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.++.++|.+||||||+++.|+-.
T Consensus 34 e~lgivGeSGsGKSTL~r~l~Gl 56 (252)
T COG1124 34 ETLGIVGESGSGKSTLARLLAGL 56 (252)
T ss_pred CEEEEEcCCCCCHHHHHHHHhcc
Confidence 57899999999999999999844
No 453
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.73 E-value=5.3e-05 Score=52.32 Aligned_cols=36 Identities=25% Similarity=0.248 Sum_probs=28.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
..+.++.|+||+||||+.+.+.+.+...+.++..+.
T Consensus 18 ~~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~a 53 (196)
T PF13604_consen 18 DRVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLA 53 (196)
T ss_dssp CSEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEE
T ss_pred CeEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEEC
Confidence 458899999999999999999988877676555553
No 454
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=97.73 E-value=4.8e-05 Score=56.36 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
...|+++|++||||||+.+.|...+
T Consensus 148 ~~~ilI~G~tGSGKTTll~aL~~~~ 172 (319)
T PRK13894 148 HRNILVIGGTGSGKTTLVNAIINEM 172 (319)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhh
Confidence 4679999999999999999999765
No 455
>PRK08006 replicative DNA helicase; Provisional
Probab=97.73 E-value=0.00091 Score=52.20 Aligned_cols=38 Identities=24% Similarity=0.366 Sum_probs=30.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d 43 (143)
..+|++.|.||.|||++|..++...- ..+..+.+|+.+
T Consensus 224 G~LiiIaarPgmGKTafalnia~~~a~~~g~~V~~fSlE 262 (471)
T PRK08006 224 SDLIIVAARPSMGKTTFAMNLCENAAMLQDKPVLIFSLE 262 (471)
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46899999999999999999997653 346777788775
No 456
>PRK13764 ATPase; Provisional
Probab=97.73 E-value=4.3e-05 Score=60.86 Aligned_cols=29 Identities=21% Similarity=0.391 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..|+++|+|||||||+++.|+..+...+
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~~~ 285 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYADMG 285 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 46799999999999999999999886544
No 457
>PRK10646 ADP-binding protein; Provisional
Probab=97.73 E-value=5e-05 Score=50.35 Aligned_cols=27 Identities=26% Similarity=0.281 Sum_probs=24.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..+|++.|.-||||||+++.|++.++.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~ 54 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGH 54 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 358999999999999999999999975
No 458
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.72 E-value=0.00041 Score=49.71 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
...+++.|++|+||||+++.+...+...
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~~ 43 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITKN 43 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhccccc
Confidence 3578999999999999999999887654
No 459
>PRK14495 putative molybdopterin-guanine dinucleotide biosynthesis protein MobB/unknown domain fusion protein; Provisional
Probab=97.71 E-value=4.6e-05 Score=58.34 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=33.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
.+|-|+|.+|||||||+..|...|...|+++.++..+
T Consensus 2 kVi~IvG~sgSGKTTLiekLI~~L~~rG~rVavIKH~ 38 (452)
T PRK14495 2 RVYGIIGWKDAGKTGLVERLVAAIAARGFSVSTVKHS 38 (452)
T ss_pred cEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 3899999999999999999999999999999888544
No 460
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.71 E-value=0.00033 Score=57.41 Aligned_cols=38 Identities=16% Similarity=0.138 Sum_probs=28.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.+.|+|||||||++..++......+-.+..+..+
T Consensus 60 GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E 97 (790)
T PRK09519 60 GRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAE 97 (790)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 46889999999999999988776544455556666544
No 461
>KOG0731|consensus
Probab=97.71 E-value=7.9e-05 Score=60.39 Aligned_cols=30 Identities=37% Similarity=0.390 Sum_probs=24.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
-|+=++++||||+|||-||+++|-.-+.++
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF 372 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPF 372 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCce
Confidence 367799999999999999999996655443
No 462
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=97.71 E-value=2.9e-05 Score=50.12 Aligned_cols=25 Identities=36% Similarity=0.492 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+..+
T Consensus 11 g~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 11 GEIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp TSEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEccCCCccccceeeecccc
Confidence 4589999999999999999998554
No 463
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=97.71 E-value=3.6e-05 Score=48.38 Aligned_cols=21 Identities=29% Similarity=0.401 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~ 29 (143)
|++.|.+|||||||.+.|...
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~ 22 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGG 22 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECcCCCCHHHHHHHHhcC
Confidence 789999999999999999854
No 464
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=97.71 E-value=0.00088 Score=50.04 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=61.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh-hhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK-HLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.+..++|+|++|+||+|+|..+++.+.+....... .++.=..+ .+.....+|++-...+.... .+....+.++.+
T Consensus 23 l~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~-~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~---~I~idqiR~l~~ 98 (334)
T PRK07993 23 GHHALLIQALPGMGDDALIYALSRWLMCQQPQGHK-SCGHCRGCQLMQAGTHPDYYTLTPEKGKS---SLGVDAVREVTE 98 (334)
T ss_pred cceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCC-CCCCCHHHHHHHcCCCCCEEEEecccccc---cCCHHHHHHHHH
Confidence 36789999999999999999999999764321110 11110111 12223345553321111000 011112333333
Q ss_pred HH-----hcCCeEEEEeCC-chhHHHHHHHHHHHHhhcCCEEEEEEee
Q psy2713 84 WL-----KNDGEVAIIDGT-TATMEKRKQIHDYFARKMGFKVLFVELI 125 (143)
Q Consensus 84 ~l-----~~~~~~vi~d~~-~~~~~~r~~~~~~~~~~~~~~~~~v~~~ 125 (143)
.+ ...-.++|+|.. ..+.+....+.+ .+++-.-..++|-+.
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLK-tLEEPp~~t~fiL~t 145 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALLTDAAANALLK-TLEEPPENTWFFLAC 145 (334)
T ss_pred HHhhccccCCceEEEEcchHhhCHHHHHHHHH-HhcCCCCCeEEEEEE
Confidence 32 233456777654 466667778888 888866555555443
No 465
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.71 E-value=5e-05 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
...|+++|++||||||+.+.+...+...
T Consensus 127 ~~~ili~G~tGSGKTT~l~all~~i~~~ 154 (270)
T PF00437_consen 127 RGNILISGPTGSGKTTLLNALLEEIPPE 154 (270)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHCHTT
T ss_pred ceEEEEECCCccccchHHHHHhhhcccc
Confidence 5789999999999999999999887654
No 466
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=97.71 E-value=3.6e-05 Score=57.23 Aligned_cols=27 Identities=33% Similarity=0.441 Sum_probs=23.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..|+++|.|||||||+++.|++.++..
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~ 189 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTT 189 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCC
Confidence 478999999999999999999987643
No 467
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=97.70 E-value=3.3e-05 Score=63.50 Aligned_cols=30 Identities=30% Similarity=0.409 Sum_probs=25.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
...++|+|+||+||||+|+.|++.++..++
T Consensus 347 ~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 347 GPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 347999999999999999999999865544
No 468
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.70 E-value=3.2e-05 Score=52.24 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+++++|.||||||++|.+++...
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~ 23 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAEL 23 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhc
Confidence 47899999999999999998763
No 469
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=97.70 E-value=4.8e-05 Score=54.60 Aligned_cols=38 Identities=18% Similarity=0.130 Sum_probs=34.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+++++|.+|+||||++..++..+...+.++-+++.|..
T Consensus 2 ~~~~~gkgG~GKtt~a~~la~~~a~~g~~vLlvd~D~~ 39 (254)
T cd00550 2 YIFFGGKGGVGKTTISAATAVRLAEQGKKVLLVSTDPA 39 (254)
T ss_pred EEEEECCCCchHHHHHHHHHHHHHHCCCCceEEeCCCc
Confidence 78999999999999999999999888999999988753
No 470
>COG3911 Predicted ATPase [General function prediction only]
Probab=97.70 E-value=3.8e-05 Score=50.50 Aligned_cols=23 Identities=39% Similarity=0.442 Sum_probs=21.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.+++|-||+||||+...|+++
T Consensus 10 ~~fIltGgpGaGKTtLL~aLa~~ 32 (183)
T COG3911 10 KRFILTGGPGAGKTTLLAALARA 32 (183)
T ss_pred eEEEEeCCCCCcHHHHHHHHHHc
Confidence 58999999999999999999876
No 471
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.70 E-value=4e-05 Score=53.43 Aligned_cols=26 Identities=35% Similarity=0.402 Sum_probs=22.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+..+-.+.||+||||||+.+.+.+-.
T Consensus 32 ~~~VTAlIGPSGcGKST~LR~lNRmn 57 (253)
T COG1117 32 KNKVTALIGPSGCGKSTLLRCLNRMN 57 (253)
T ss_pred CCceEEEECCCCcCHHHHHHHHHhhc
Confidence 44688999999999999999998643
No 472
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.70 E-value=0.0014 Score=43.60 Aligned_cols=40 Identities=15% Similarity=0.169 Sum_probs=28.2
Q ss_pred HHHhcCCeEEEEeCCchh------HHHHHHHHHHHHhhcCCEEEEEE
Q psy2713 83 KWLKNDGEVAIIDGTTAT------MEKRKQIHDYFARKMGFKVLFVE 123 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~------~~~r~~~~~~~~~~~~~~~~~v~ 123 (143)
..+-.....+++|-+++. ...|++... .++..+++.+.|.
T Consensus 147 R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs-~~r~agiPtv~VT 192 (213)
T COG4136 147 RALLAQPKALLLDEPFSRLDVALRDQFRQWVFS-EVRAAGIPTVQVT 192 (213)
T ss_pred HHHHhCcceeeeCCchhHHHHHHHHHHHHHHHH-HHHhcCCCeEEEe
Confidence 344445778999998743 356677777 8888899887654
No 473
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=97.70 E-value=3.1e-05 Score=57.52 Aligned_cols=21 Identities=29% Similarity=0.426 Sum_probs=19.9
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.++++.||+||||||+-+.||
T Consensus 30 ef~vllGPSGcGKSTlLr~IA 50 (338)
T COG3839 30 EFVVLLGPSGCGKSTLLRMIA 50 (338)
T ss_pred CEEEEECCCCCCHHHHHHHHh
Confidence 579999999999999999998
No 474
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.69 E-value=7e-05 Score=56.07 Aligned_cols=27 Identities=15% Similarity=0.265 Sum_probs=24.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..+|+++|++||||||+.+.+...+..
T Consensus 122 ~g~ili~G~tGSGKTT~l~al~~~i~~ 148 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTTLASMIDYINK 148 (343)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCc
Confidence 468999999999999999999987754
No 475
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.69 E-value=0.001 Score=53.57 Aligned_cols=28 Identities=18% Similarity=0.216 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++|+|++|+||||+|+.+++.+.+.
T Consensus 39 ~hayLf~Gp~G~GKtt~A~~lAk~l~c~ 66 (614)
T PRK14971 39 AHAYLFCGPRGVGKTTCARIFAKTINCQ 66 (614)
T ss_pred CeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 5679999999999999999999998754
No 476
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=97.69 E-value=5e-05 Score=56.57 Aligned_cols=29 Identities=31% Similarity=0.278 Sum_probs=25.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..+.++++.||+|+||||+++.|.+.+..
T Consensus 86 ~~krIl~L~GPvg~GKSsl~~~Lk~~le~ 114 (358)
T PF08298_consen 86 ERKRILLLLGPVGGGKSSLAELLKRGLEE 114 (358)
T ss_pred ccceEEEEECCCCCCHHHHHHHHHHHhhe
Confidence 45689999999999999999999988753
No 477
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=97.69 E-value=2.8e-05 Score=53.94 Aligned_cols=26 Identities=38% Similarity=0.551 Sum_probs=20.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.-++|.|+||+|||++|+.+...|+.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP~ 48 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLPP 48 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS--
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCCC
Confidence 46899999999999999999987754
No 478
>PRK03003 GTP-binding protein Der; Reviewed
Probab=97.69 E-value=0.00015 Score=56.52 Aligned_cols=112 Identities=20% Similarity=0.243 Sum_probs=56.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc-----cCCCCceeEehhhhhhhhhhhcCCCCccccCchh--hhhHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT-----WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE--GYNIRQLSAREAQE 79 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 79 (143)
..|+++|.||+|||||...|...-. ..+...+.+.... .... ....+++..+.+ ...+. .....
T Consensus 39 ~~V~IvG~~nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~----~~~~-~~~~l~DT~G~~~~~~~~~----~~~~~ 109 (472)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDA----EWNG-RRFTVVDTGGWEPDAKGLQ----ASVAE 109 (472)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEE----EECC-cEEEEEeCCCcCCcchhHH----HHHHH
Confidence 4699999999999999999974311 1122111111100 0000 001112211111 00011 11112
Q ss_pred HHHHHH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCc
Q psy2713 80 DATKWL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQD 128 (143)
Q Consensus 80 ~~~~~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~ 128 (143)
++..++ ...+..+|+|.+.........+.+ .++..+.++++|---++.
T Consensus 110 ~~~~~~~~aD~il~VvD~~~~~s~~~~~i~~-~l~~~~~piilV~NK~Dl 158 (472)
T PRK03003 110 QAEVAMRTADAVLFVVDATVGATATDEAVAR-VLRRSGKPVILAANKVDD 158 (472)
T ss_pred HHHHHHHhCCEEEEEEECCCCCCHHHHHHHH-HHHHcCCCEEEEEECccC
Confidence 222233 334667889998754444456777 777778888877655654
No 479
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=97.68 E-value=0.00019 Score=51.08 Aligned_cols=42 Identities=19% Similarity=0.236 Sum_probs=32.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.+++..|.-|+||||+|..|+-.|-..|.++.++..|.+.+.
T Consensus 2 iIvV~sgKGGvGKSTva~~lA~aLa~~G~kVg~lD~Di~q~S 43 (261)
T PF09140_consen 2 IIVVGSGKGGVGKSTVAVNLAVALARMGKKVGLLDLDIRQPS 43 (261)
T ss_dssp EEEEE-SSTTTTHHHHHHHHHHHHHCTT--EEEEE--TTT-H
T ss_pred EEEEecCCCCCcHHHHHHHHHHHHHHCCCeEEEEecCCCCCC
Confidence 367889999999999999999999999999999999876554
No 480
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.68 E-value=3.7e-05 Score=48.30 Aligned_cols=20 Identities=40% Similarity=0.687 Sum_probs=18.7
Q ss_pred EEEEccCCCChhHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~ 28 (143)
|++.|.|||||||+.+.|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999984
No 481
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=97.68 E-value=9.2e-05 Score=48.36 Aligned_cols=20 Identities=40% Similarity=0.632 Sum_probs=17.4
Q ss_pred EEEccCCCChhHHHHHHHHH
Q psy2713 10 ALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 10 ~l~G~pGsGKSTla~~l~~~ 29 (143)
+++|.+|+||||+...|...
T Consensus 1 ~l~G~~~~GKssl~~~l~~~ 20 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGR 20 (157)
T ss_pred CccCCCCCCHHHHHHHHhCC
Confidence 47899999999999999743
No 482
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=3e-05 Score=60.67 Aligned_cols=33 Identities=30% Similarity=0.253 Sum_probs=27.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
.+..+++.|+||+|||.+|+.++...+..++..
T Consensus 275 ~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v 307 (494)
T COG0464 275 PPKGVLLYGPPGTGKTLLAKAVALESRSRFISV 307 (494)
T ss_pred CCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEe
Confidence 456899999999999999999999776655433
No 483
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=97.68 E-value=4.7e-05 Score=57.28 Aligned_cols=26 Identities=27% Similarity=0.365 Sum_probs=23.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+|+++|++||||||+.+.|...+.
T Consensus 134 ~glilI~GpTGSGKTTtL~aLl~~i~ 159 (358)
T TIGR02524 134 EGIVFITGATGSGKSTLLAAIIRELA 159 (358)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46999999999999999999998874
No 484
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.68 E-value=6.7e-05 Score=52.90 Aligned_cols=25 Identities=28% Similarity=0.380 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|+|||||||++..++...
T Consensus 19 g~i~~i~G~~GsGKT~l~~~l~~~~ 43 (235)
T cd01123 19 GSITEIFGEFGSGKTQLCHQLAVTV 43 (235)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHe
Confidence 4689999999999999999998553
No 485
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=97.67 E-value=0.00031 Score=47.30 Aligned_cols=23 Identities=30% Similarity=0.387 Sum_probs=20.5
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|+++|.+||||||+...|.....
T Consensus 2 v~v~G~~~~GKStlln~l~~~~~ 24 (189)
T cd00881 2 VGIAGHVDHGKTTLTERLLYVTG 24 (189)
T ss_pred EEEEeCCCCCHHHHHHHHHHhcC
Confidence 78999999999999999987643
No 486
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=97.67 E-value=0.00066 Score=48.20 Aligned_cols=24 Identities=33% Similarity=0.308 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.+-++.|+||+||||++..++...
T Consensus 2 ~~~ll~g~~G~GKS~lal~la~~v 25 (239)
T cd01125 2 YVSALVAPGGTGKSSLLLVLALAM 25 (239)
T ss_pred ceeEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998653
No 487
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=97.67 E-value=0.0015 Score=51.48 Aligned_cols=38 Identities=21% Similarity=0.357 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|.||+|||+++.+++...-..+.++.+++.+
T Consensus 273 g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e 310 (509)
T PRK09302 273 GSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFE 310 (509)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 46889999999999999999987655557777777554
No 488
>PHA02624 large T antigen; Provisional
Probab=97.67 E-value=4.8e-05 Score=60.33 Aligned_cols=28 Identities=25% Similarity=0.087 Sum_probs=25.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+++.++++.|+|||||||++..|.+.++
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~ 456 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCG 456 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3456999999999999999999999984
No 489
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.67 E-value=3.6e-05 Score=59.17 Aligned_cols=26 Identities=38% Similarity=0.514 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...|++.|+||+||||+|+.|+..+.
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~ 219 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLT 219 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhc
Confidence 35788999999999999999998875
No 490
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=97.67 E-value=4.7e-05 Score=50.90 Aligned_cols=24 Identities=25% Similarity=0.248 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..+++|+|.+|+|||||.+.|...
T Consensus 35 ~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 35 GKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhh
Confidence 478999999999999999999744
No 491
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.67 E-value=0.00058 Score=51.88 Aligned_cols=31 Identities=26% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
-.++.|+||+||||+++.++..+...+.+..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~ 201 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVH 201 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeE
Confidence 4678899999999999999988765433443
No 492
>KOG0071|consensus
Probab=97.67 E-value=7e-05 Score=48.73 Aligned_cols=97 Identities=21% Similarity=0.284 Sum_probs=53.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCcccc-CchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRV-DNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+.+-|++.|+.||||||+.-+|.-.-....+++.-|+...+-... .. |+. +-.. ++-+.-++.
T Consensus 16 KE~~ilmlGLd~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtykN------~k-fNvwdvGG---------qd~iRplWr 79 (180)
T KOG0071|consen 16 KEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKN------VK-FNVWDVGG---------QDKIRPLWR 79 (180)
T ss_pred ccceEEEEecccCCceehhhHHhcCCCcccccccceeEEEEEeee------eE-EeeeeccC---------chhhhHHHH
Confidence 456799999999999999999874433333444444443221111 11 221 1000 111333333
Q ss_pred HH--hcCCeEEEEeCCch--hHHHHHHHHHHHHhhcCCE
Q psy2713 84 WL--KNDGEVAIIDGTTA--TMEKRKQIHDYFARKMGFK 118 (143)
Q Consensus 84 ~l--~~~~~~vi~d~~~~--~~~~r~~~~~~~~~~~~~~ 118 (143)
.. ...|-++|+|+... ..+.|..+.. +.......
T Consensus 80 hYy~gtqglIFV~Dsa~~dr~eeAr~ELh~-ii~~~em~ 117 (180)
T KOG0071|consen 80 HYYTGTQGLIFVVDSADRDRIEEARNELHR-IINDREMR 117 (180)
T ss_pred hhccCCceEEEEEeccchhhHHHHHHHHHH-HhCCHhhh
Confidence 22 45678899998754 4466777777 66554433
No 493
>PRK14491 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MoeA; Provisional
Probab=97.66 E-value=6.5e-05 Score=60.07 Aligned_cols=38 Identities=18% Similarity=0.195 Sum_probs=34.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
+..++-++|.+||||||+...|..+|...|+++.++..
T Consensus 9 ~~~vi~ivG~s~sGKTTlie~li~~L~~~G~rVavIKh 46 (597)
T PRK14491 9 SIPLLGFCAYSGTGKTTLLEQLIPELNQRGLRLAVIKH 46 (597)
T ss_pred CccEEEEEcCCCCCHHHHHHHHHHHHHhCCceEEEEEc
Confidence 35699999999999999999999999988998888855
No 494
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.66 E-value=0.00076 Score=48.54 Aligned_cols=26 Identities=23% Similarity=0.244 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..++.++|-+||||||+++.|...+.
T Consensus 39 ge~~glVGESG~GKSTlgr~i~~L~~ 64 (268)
T COG4608 39 GETLGLVGESGCGKSTLGRLILGLEE 64 (268)
T ss_pred CCEEEEEecCCCCHHHHHHHHHcCcC
Confidence 35789999999999999999987664
No 495
>PTZ00202 tuzin; Provisional
Probab=97.66 E-value=0.00071 Score=52.29 Aligned_cols=26 Identities=27% Similarity=0.411 Sum_probs=23.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|.+++++|++|+||||+++.+...++
T Consensus 286 privvLtG~~G~GKTTLlR~~~~~l~ 311 (550)
T PTZ00202 286 PRIVVFTGFRGCGKSSLCRSAVRKEG 311 (550)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56999999999999999999998776
No 496
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.66 E-value=0.00096 Score=49.73 Aligned_cols=29 Identities=21% Similarity=0.132 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
-|..++|+|++|+||+|+|+.+++.+.+.
T Consensus 27 l~ha~Lf~G~~G~gk~~~a~~la~~l~c~ 55 (329)
T PRK08058 27 LSHAYLFEGAKGTGKKATALWLAKSLFCL 55 (329)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHCCC
Confidence 36789999999999999999999998654
No 497
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.66 E-value=0.00047 Score=52.50 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=24.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
..++++|+||+||||+++.+++.+...+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhf 197 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHP 197 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCC
Confidence 46899999999999999999998765543
No 498
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=97.66 E-value=4.8e-05 Score=57.02 Aligned_cols=28 Identities=29% Similarity=0.400 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.-..|+++|+||+|||.+|..+++.|+.
T Consensus 49 aGr~iLiaGppGtGKTAlA~~ia~eLG~ 76 (398)
T PF06068_consen 49 AGRAILIAGPPGTGKTALAMAIAKELGE 76 (398)
T ss_dssp TT-EEEEEE-TTSSHHHHHHHHHHHCTT
T ss_pred cCcEEEEeCCCCCCchHHHHHHHHHhCC
Confidence 3578999999999999999999999973
No 499
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=97.66 E-value=0.0012 Score=47.81 Aligned_cols=106 Identities=15% Similarity=0.088 Sum_probs=69.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh---hhhcC---------CC-----------Cccc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH---LELYN---------SH-----------DIFR 60 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~---~~~~~---------~~-----------~~~~ 60 (143)
.+..+.+..|.+|.||||++-.||..+-..|.++.++.+|-+.... +.... +. ..++
T Consensus 56 ~~~~I~V~S~kgGvGKStva~nLA~alA~~G~rVlliDaD~~gps~~~~l~~~~~~g~~~~~~g~~~~~~~~~~~~~~ls 135 (265)
T COG0489 56 VKNVIAVTSGKGGVGKSTVAVNLAAALAQLGKRVLLLDADLRGPSIPRMLGLENLPGLTELLAGEALEPVIQHDGIKVLS 135 (265)
T ss_pred cceEEEEEeCCCCCcHHHHHHHHHHHHHhcCCcEEEEeCcCCCCchHHHhCCCCCCCcccccCCCccccceecCccceEE
Confidence 3456889999999999999999999999999999999888765542 11100 00 0000
Q ss_pred --cCchhhhhHHHHHHHHHHHHHHHHHhcC-CeEEEEeCCchhHHHHHHHHH
Q psy2713 61 --VDNTEGYNIRQLSAREAQEDATKWLKND-GEVAIIDGTTATMEKRKQIHD 109 (143)
Q Consensus 61 --~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~vi~d~~~~~~~~r~~~~~ 109 (143)
........+++......+.+++...... -+.+|+|++..+...--.+.+
T Consensus 136 i~~~~~~p~~~r~~l~s~~~~qll~~~~~~~~D~vIID~PP~~g~~d~~i~~ 187 (265)
T COG0489 136 ILPLGPVPVIPRGLLGSKAMLQLLEDVLWGEYDYVIIDTPPGTGDADATVLQ 187 (265)
T ss_pred EEecCCCCCCChHhhhhHHHHHHHHHHhccCCCEEEEeCCCCchHHHHHHHh
Confidence 0011223345555556667777666444 578999999988765555544
No 500
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=97.66 E-value=4.8e-05 Score=52.07 Aligned_cols=25 Identities=36% Similarity=0.456 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 18 Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 18 GEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998544
Done!