Query psy2713
Match_columns 143
No_of_seqs 118 out of 1287
Neff 9.7
Searched_HMMs 29240
Date Fri Aug 16 23:20:06 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2713.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2713hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2axn_A 6-phosphofructo-2-kinas 99.9 2E-23 7E-28 161.1 17.5 135 5-140 34-169 (520)
2 1bif_A 6-phosphofructo-2-kinas 99.9 6.8E-21 2.3E-25 145.5 17.1 136 4-140 37-173 (469)
3 1ly1_A Polynucleotide kinase; 99.8 1.3E-17 4.6E-22 111.6 14.5 122 5-139 1-127 (181)
4 3a4m_A L-seryl-tRNA(SEC) kinas 99.7 4.9E-17 1.7E-21 115.6 13.9 119 5-139 3-121 (260)
5 2rhm_A Putative kinase; P-loop 99.7 2E-16 7E-21 107.0 15.2 125 4-140 3-127 (193)
6 1ltq_A Polynucleotide kinase; 99.7 3.6E-16 1.2E-20 112.8 14.9 122 5-139 1-127 (301)
7 1qhx_A CPT, protein (chloramph 99.7 4.2E-16 1.4E-20 104.4 13.3 128 4-139 1-134 (178)
8 3zvl_A Bifunctional polynucleo 99.7 5.7E-17 1.9E-21 122.2 10.1 105 3-140 255-359 (416)
9 2p5t_B PEZT; postsegregational 99.7 4.6E-16 1.6E-20 110.1 14.2 128 4-139 30-158 (253)
10 2vli_A Antibiotic resistance p 99.7 6.7E-17 2.3E-21 108.6 8.7 122 3-139 2-126 (183)
11 2yvu_A Probable adenylyl-sulfa 99.7 1.5E-15 5.3E-20 102.5 14.2 123 3-137 10-132 (186)
12 1gvn_B Zeta; postsegregational 99.7 6.1E-16 2.1E-20 111.4 11.2 130 3-139 30-163 (287)
13 1tev_A UMP-CMP kinase; ploop, 99.6 2.1E-15 7.1E-20 102.0 11.5 128 4-139 1-135 (196)
14 3umf_A Adenylate kinase; rossm 99.6 8.3E-16 2.9E-20 106.5 8.4 127 4-141 27-156 (217)
15 1qf9_A UMP/CMP kinase, protein 99.6 5.6E-16 1.9E-20 104.7 7.4 127 1-139 1-132 (194)
16 3sr0_A Adenylate kinase; phosp 99.6 9.1E-15 3.1E-19 100.7 13.1 125 7-141 1-127 (206)
17 3t61_A Gluconokinase; PSI-biol 99.6 1.6E-15 5.6E-20 103.6 8.9 114 6-140 18-133 (202)
18 2cdn_A Adenylate kinase; phosp 99.6 3E-15 1E-19 102.2 6.3 126 3-139 17-148 (201)
19 1x6v_B Bifunctional 3'-phospho 99.6 3.8E-14 1.3E-18 111.1 13.0 121 4-136 50-170 (630)
20 1m7g_A Adenylylsulfate kinase; 99.6 7.3E-14 2.5E-18 96.1 13.0 120 4-135 23-149 (211)
21 1knq_A Gluconate kinase; ALFA/ 99.6 2.9E-14 1E-18 95.2 10.4 118 4-139 6-125 (175)
22 3lw7_A Adenylate kinase relate 99.6 8.7E-14 3E-18 92.2 11.7 121 7-140 2-124 (179)
23 1m8p_A Sulfate adenylyltransfe 99.5 6.6E-14 2.3E-18 109.2 12.7 122 3-137 393-515 (573)
24 3uie_A Adenylyl-sulfate kinase 99.5 1.4E-13 4.8E-18 93.9 12.3 118 4-135 23-140 (200)
25 4eun_A Thermoresistant glucoki 99.5 2.7E-14 9.3E-19 97.5 8.6 118 5-140 28-147 (200)
26 2c95_A Adenylate kinase 1; tra 99.5 1.3E-14 4.4E-19 98.3 6.5 122 5-139 8-134 (196)
27 2bwj_A Adenylate kinase 5; pho 99.5 4.6E-14 1.6E-18 95.8 9.0 123 5-140 11-138 (199)
28 3fb4_A Adenylate kinase; psych 99.5 2.9E-14 9.8E-19 98.2 7.6 120 8-138 2-127 (216)
29 3cm0_A Adenylate kinase; ATP-b 99.5 1.2E-13 4.2E-18 92.9 10.4 120 4-139 2-127 (186)
30 3dl0_A Adenylate kinase; phosp 99.5 2.2E-14 7.6E-19 98.8 6.8 120 8-138 2-127 (216)
31 1aky_A Adenylate kinase; ATP:A 99.5 7.8E-14 2.7E-18 96.5 9.1 124 6-139 4-133 (220)
32 3tlx_A Adenylate kinase 2; str 99.5 4.1E-14 1.4E-18 99.5 7.6 124 4-140 27-158 (243)
33 2pez_A Bifunctional 3'-phospho 99.5 1.2E-12 4.3E-17 87.6 13.2 122 4-137 3-124 (179)
34 1ukz_A Uridylate kinase; trans 99.5 2.4E-13 8.1E-18 92.8 9.0 123 3-139 12-142 (203)
35 3be4_A Adenylate kinase; malar 99.5 2.4E-13 8.1E-18 94.0 8.8 123 6-139 5-133 (217)
36 2plr_A DTMP kinase, probable t 99.5 4.7E-12 1.6E-16 86.5 14.4 131 4-139 2-144 (213)
37 2gks_A Bifunctional SAT/APS ki 99.4 9.1E-13 3.1E-17 102.3 10.4 118 5-136 371-488 (546)
38 2xb4_A Adenylate kinase; ATP-b 99.4 2.2E-12 7.5E-17 89.5 11.2 120 7-139 1-127 (223)
39 1kht_A Adenylate kinase; phosp 99.4 1.2E-12 4E-17 88.2 8.5 45 4-48 1-45 (192)
40 1nn5_A Similar to deoxythymidy 99.4 5.2E-12 1.8E-16 86.5 11.3 38 4-41 7-44 (215)
41 1nks_A Adenylate kinase; therm 99.4 5.8E-12 2E-16 84.8 11.1 41 7-47 2-42 (194)
42 1ak2_A Adenylate kinase isoenz 99.4 6.7E-13 2.3E-17 92.6 5.9 124 5-139 15-144 (233)
43 2wwf_A Thymidilate kinase, put 99.4 5E-12 1.7E-16 86.5 9.7 37 5-41 9-45 (212)
44 3vaa_A Shikimate kinase, SK; s 99.4 1.4E-12 4.9E-17 88.9 6.7 112 6-136 25-136 (199)
45 3trf_A Shikimate kinase, SK; a 99.3 3.6E-12 1.2E-16 85.6 8.4 109 6-135 5-115 (185)
46 3gmt_A Adenylate kinase; ssgci 99.3 2.3E-12 7.7E-17 89.8 6.9 120 7-141 9-134 (230)
47 1zd8_A GTP:AMP phosphotransfer 99.3 7.4E-13 2.5E-17 92.0 4.4 118 5-139 6-129 (227)
48 2ze6_A Isopentenyl transferase 99.3 1.3E-11 4.6E-16 87.2 10.5 120 7-140 2-140 (253)
49 1zak_A Adenylate kinase; ATP:A 99.3 2.1E-12 7.3E-17 89.3 5.8 33 5-37 4-36 (222)
50 3kb2_A SPBC2 prophage-derived 99.3 2.5E-11 8.5E-16 80.3 9.2 32 7-38 2-33 (173)
51 2iyv_A Shikimate kinase, SK; t 99.3 6.3E-12 2.2E-16 84.4 6.3 39 6-49 2-40 (184)
52 2pt5_A Shikimate kinase, SK; a 99.3 1.2E-11 4E-16 81.8 7.2 111 7-138 1-113 (168)
53 1e4v_A Adenylate kinase; trans 99.3 2.4E-11 8E-16 83.6 8.9 115 8-139 2-124 (214)
54 1e6c_A Shikimate kinase; phosp 99.3 2.2E-11 7.5E-16 80.8 8.3 37 7-48 3-39 (173)
55 1uj2_A Uridine-cytidine kinase 99.3 6.3E-11 2.2E-15 83.5 11.0 44 4-47 20-68 (252)
56 2pbr_A DTMP kinase, thymidylat 99.3 1E-10 3.5E-15 78.7 11.5 26 7-32 1-26 (195)
57 4eaq_A DTMP kinase, thymidylat 99.3 9.7E-11 3.3E-15 81.6 11.6 126 5-139 25-170 (229)
58 4edh_A DTMP kinase, thymidylat 99.2 8.1E-10 2.8E-14 76.2 14.9 130 4-139 4-153 (213)
59 2z0h_A DTMP kinase, thymidylat 99.2 1.9E-10 6.5E-15 77.7 11.5 31 7-37 1-31 (197)
60 2bdt_A BH3686; alpha-beta prot 99.2 9.5E-10 3.3E-14 74.0 15.0 120 6-139 2-123 (189)
61 1y63_A LMAJ004144AAA protein; 99.2 1.2E-11 4E-16 83.3 5.3 113 2-139 6-122 (184)
62 2grj_A Dephospho-COA kinase; T 99.2 1.4E-10 4.9E-15 78.8 10.5 116 6-136 12-148 (192)
63 3iij_A Coilin-interacting nucl 99.2 4E-12 1.4E-16 85.1 2.8 108 5-139 10-118 (180)
64 4gp7_A Metallophosphoesterase; 99.2 7.4E-10 2.5E-14 73.7 13.8 115 5-139 8-122 (171)
65 3lv8_A DTMP kinase, thymidylat 99.2 9.5E-10 3.2E-14 77.0 14.4 134 3-139 24-176 (236)
66 4tmk_A Protein (thymidylate ki 99.2 2.2E-09 7.7E-14 74.0 15.2 134 4-139 1-154 (213)
67 2qor_A Guanylate kinase; phosp 99.2 1.4E-10 4.9E-15 79.2 8.9 27 5-31 11-37 (204)
68 2jaq_A Deoxyguanosine kinase; 99.1 5.2E-10 1.8E-14 75.8 10.4 26 7-32 1-26 (205)
69 1via_A Shikimate kinase; struc 99.1 7.1E-11 2.4E-15 78.7 5.2 36 8-48 6-41 (175)
70 2f6r_A COA synthase, bifunctio 99.1 1.3E-10 4.5E-15 83.3 6.9 38 4-47 73-110 (281)
71 3cr8_A Sulfate adenylyltranfer 99.1 5.3E-10 1.8E-14 86.9 10.7 119 5-136 368-487 (552)
72 3v9p_A DTMP kinase, thymidylat 99.1 1.9E-09 6.5E-14 75.0 10.5 126 5-139 24-173 (227)
73 1uf9_A TT1252 protein; P-loop, 99.1 4.7E-10 1.6E-14 76.0 7.1 37 4-46 6-42 (203)
74 1kag_A SKI, shikimate kinase I 99.0 6.1E-10 2.1E-14 73.8 7.3 38 5-47 3-40 (173)
75 2v54_A DTMP kinase, thymidylat 99.0 1.2E-09 4.1E-14 74.1 8.8 26 5-30 3-28 (204)
76 4i1u_A Dephospho-COA kinase; s 99.0 1E-09 3.4E-14 75.5 8.3 119 5-139 8-153 (210)
77 3a8t_A Adenylate isopentenyltr 99.0 4.1E-09 1.4E-13 77.2 11.9 35 6-45 40-74 (339)
78 1zuh_A Shikimate kinase; alpha 99.0 4.4E-10 1.5E-14 74.3 6.1 38 6-48 7-44 (168)
79 4hlc_A DTMP kinase, thymidylat 99.0 2.4E-08 8.3E-13 68.4 14.8 126 6-140 2-147 (205)
80 1jjv_A Dephospho-COA kinase; P 99.0 9.1E-10 3.1E-14 75.0 7.1 36 6-47 2-37 (206)
81 3nwj_A ATSK2; P loop, shikimat 99.0 1.5E-09 5.2E-14 76.6 7.8 38 6-48 48-85 (250)
82 1vht_A Dephospho-COA kinase; s 99.0 1.4E-09 4.7E-14 74.8 7.2 37 5-47 3-39 (218)
83 1gtv_A TMK, thymidylate kinase 99.0 2.4E-10 8.3E-15 78.1 3.2 34 7-40 1-34 (214)
84 1rz3_A Hypothetical protein rb 99.0 1.5E-10 5.2E-15 78.9 1.6 43 4-46 20-62 (201)
85 3hjn_A DTMP kinase, thymidylat 99.0 1.3E-08 4.4E-13 69.3 11.2 35 7-41 1-35 (197)
86 2qt1_A Nicotinamide riboside k 98.9 5.6E-09 1.9E-13 71.2 9.2 38 5-46 20-57 (207)
87 2if2_A Dephospho-COA kinase; a 98.9 5.9E-10 2E-14 75.8 4.0 36 7-48 2-37 (204)
88 1zp6_A Hypothetical protein AT 98.9 9.4E-09 3.2E-13 69.0 9.6 119 6-139 9-127 (191)
89 2bbw_A Adenylate kinase 4, AK4 98.9 9.6E-09 3.3E-13 71.9 9.8 31 5-35 26-56 (246)
90 3dm5_A SRP54, signal recogniti 98.9 2.6E-08 9E-13 75.4 12.4 45 5-49 99-143 (443)
91 3tqc_A Pantothenate kinase; bi 98.9 8E-09 2.7E-13 75.3 9.1 43 4-46 90-134 (321)
92 3crm_A TRNA delta(2)-isopenten 98.9 1.2E-08 4.2E-13 74.3 9.4 36 5-45 4-39 (323)
93 3fdi_A Uncharacterized protein 98.9 1.6E-08 5.4E-13 69.1 9.5 35 4-38 4-38 (201)
94 3ld9_A DTMP kinase, thymidylat 98.9 2.8E-08 9.5E-13 69.0 10.1 38 2-39 17-55 (223)
95 3tau_A Guanylate kinase, GMP k 98.8 8.3E-09 2.8E-13 70.7 6.9 27 5-31 7-33 (208)
96 3hdt_A Putative kinase; struct 98.8 6.3E-08 2.2E-12 67.2 11.3 36 5-40 13-48 (223)
97 3kl4_A SRP54, signal recogniti 98.8 5.2E-08 1.8E-12 73.7 11.2 45 5-49 96-140 (433)
98 3tr0_A Guanylate kinase, GMP k 98.8 7.4E-08 2.5E-12 65.2 10.8 27 5-31 6-32 (205)
99 3a00_A Guanylate kinase, GMP k 98.8 3.9E-08 1.4E-12 66.0 8.7 26 6-31 1-26 (186)
100 3exa_A TRNA delta(2)-isopenten 98.7 4.6E-08 1.6E-12 71.0 8.8 37 4-45 1-37 (322)
101 3d3q_A TRNA delta(2)-isopenten 98.7 4.2E-08 1.4E-12 71.9 7.9 35 6-45 7-41 (340)
102 1a7j_A Phosphoribulokinase; tr 98.7 6.3E-09 2.2E-13 74.9 3.4 43 5-47 4-46 (290)
103 1vma_A Cell division protein F 98.7 8.1E-08 2.8E-12 69.6 9.1 45 4-48 102-146 (306)
104 1ex7_A Guanylate kinase; subst 98.7 1.2E-07 4.1E-12 64.0 9.1 24 8-31 3-26 (186)
105 3ec2_A DNA replication protein 98.7 2.1E-07 7E-12 62.0 9.8 43 5-47 37-80 (180)
106 3foz_A TRNA delta(2)-isopenten 98.7 1.2E-07 4.1E-12 68.7 9.1 35 5-44 9-43 (316)
107 3ake_A Cytidylate kinase; CMP 98.7 9.5E-09 3.3E-13 69.8 3.0 35 8-47 4-38 (208)
108 3r20_A Cytidylate kinase; stru 98.7 7.8E-09 2.7E-13 72.2 2.4 39 4-47 7-45 (233)
109 1cke_A CK, MSSA, protein (cyti 98.7 9.6E-09 3.3E-13 70.8 2.6 37 6-47 5-41 (227)
110 2j37_W Signal recognition part 98.6 3E-07 1E-11 70.7 11.0 45 4-48 99-143 (504)
111 2h92_A Cytidylate kinase; ross 98.6 1.2E-08 4E-13 70.1 1.7 39 4-47 1-39 (219)
112 1zu4_A FTSY; GTPase, signal re 98.6 4.9E-07 1.7E-11 65.9 10.2 44 4-47 103-146 (320)
113 3c8u_A Fructokinase; YP_612366 98.6 7.9E-08 2.7E-12 65.6 5.4 42 4-45 20-61 (208)
114 2xxa_A Signal recognition part 98.6 2.4E-07 8.3E-12 70.1 8.5 45 4-48 98-143 (433)
115 2px0_A Flagellar biosynthesis 98.6 3.1E-07 1E-11 66.3 8.6 43 5-47 104-147 (296)
116 3eph_A TRNA isopentenyltransfe 98.5 3.4E-07 1.2E-11 68.5 8.4 34 6-44 2-35 (409)
117 4e22_A Cytidylate kinase; P-lo 98.5 3.2E-08 1.1E-12 69.7 2.4 31 6-36 27-57 (252)
118 1odf_A YGR205W, hypothetical 3 98.5 6.8E-08 2.3E-12 69.5 4.1 43 4-46 29-74 (290)
119 3ney_A 55 kDa erythrocyte memb 98.5 1.8E-07 6E-12 63.7 5.3 30 2-31 15-44 (197)
120 3ch4_B Pmkase, phosphomevalona 98.5 1.3E-05 4.6E-10 54.5 14.6 124 5-135 10-144 (202)
121 1j8m_F SRP54, signal recogniti 98.5 2E-06 6.8E-11 62.0 11.1 42 6-47 98-139 (297)
122 2j41_A Guanylate kinase; GMP, 98.5 7.6E-08 2.6E-12 65.2 3.3 27 4-30 4-30 (207)
123 3asz_A Uridine kinase; cytidin 98.5 1.7E-07 5.7E-12 63.9 5.0 39 4-45 4-42 (211)
124 3tmk_A Thymidylate kinase; pho 98.5 9.3E-07 3.2E-11 61.0 8.7 28 5-32 4-31 (216)
125 1q3t_A Cytidylate kinase; nucl 98.5 6.4E-08 2.2E-12 67.4 2.6 39 4-47 14-52 (236)
126 1xjc_A MOBB protein homolog; s 98.5 1.5E-07 5.2E-12 62.5 4.3 38 6-43 4-41 (169)
127 1kgd_A CASK, peripheral plasma 98.4 1.2E-07 4.1E-12 63.4 3.6 28 4-31 3-30 (180)
128 2ffh_A Protein (FFH); SRP54, s 98.4 4.3E-06 1.5E-10 63.1 12.3 44 5-48 97-140 (425)
129 2yhs_A FTSY, cell division pro 98.4 1.3E-06 4.3E-11 67.1 9.2 43 4-46 291-333 (503)
130 3syl_A Protein CBBX; photosynt 98.4 2.3E-06 8E-11 61.3 10.0 29 6-34 67-95 (309)
131 1g8f_A Sulfate adenylyltransfe 98.4 1.7E-07 5.9E-12 72.2 4.3 28 5-32 394-421 (511)
132 4b4t_J 26S protease regulatory 98.4 9.2E-07 3.1E-11 66.2 7.7 29 5-33 181-209 (405)
133 4b4t_M 26S protease regulatory 98.4 9.6E-07 3.3E-11 66.8 7.8 29 5-33 214-242 (434)
134 3bos_A Putative DNA replicatio 98.4 4.5E-07 1.5E-11 62.4 5.3 42 5-46 51-92 (242)
135 4b4t_L 26S protease subunit RP 98.4 1.1E-06 3.8E-11 66.5 7.7 29 5-33 214-242 (437)
136 3t15_A Ribulose bisphosphate c 98.4 2.6E-07 8.9E-12 66.4 4.1 30 5-34 35-64 (293)
137 1sq5_A Pantothenate kinase; P- 98.4 6.5E-07 2.2E-11 64.8 6.2 42 4-45 78-121 (308)
138 4b4t_K 26S protease regulatory 98.4 1.2E-06 4.3E-11 66.1 7.8 29 5-33 205-233 (428)
139 1njg_A DNA polymerase III subu 98.4 3.8E-06 1.3E-10 57.3 9.7 28 6-33 45-72 (250)
140 2w58_A DNAI, primosome compone 98.4 7.2E-07 2.5E-11 60.3 5.7 41 7-47 55-95 (202)
141 2cvh_A DNA repair and recombin 98.3 6.7E-06 2.3E-10 55.9 10.1 35 6-43 20-54 (220)
142 3h4m_A Proteasome-activating n 98.3 4.4E-06 1.5E-10 59.3 9.4 28 5-32 50-77 (285)
143 4b4t_H 26S protease regulatory 98.3 1.8E-06 6.2E-11 65.6 7.4 29 5-33 242-270 (467)
144 2v3c_C SRP54, signal recogniti 98.3 2.3E-07 7.8E-12 70.2 2.5 44 5-48 98-141 (432)
145 3bh0_A DNAB-like replicative h 98.3 2.1E-05 7.2E-10 57.0 12.7 38 6-43 68-105 (315)
146 4b4t_I 26S protease regulatory 98.3 2.3E-06 7.9E-11 64.5 7.7 29 5-33 215-243 (437)
147 1np6_A Molybdopterin-guanine d 98.3 7.8E-07 2.7E-11 59.4 4.4 37 6-42 6-42 (174)
148 2zr9_A Protein RECA, recombina 98.3 6.4E-06 2.2E-10 60.7 9.5 38 6-43 61-98 (349)
149 2ocp_A DGK, deoxyguanosine kin 98.3 5.4E-07 1.8E-11 62.8 3.6 27 5-31 1-27 (241)
150 3hr8_A Protein RECA; alpha and 98.3 2.5E-06 8.7E-11 63.0 7.2 38 6-43 61-98 (356)
151 2jeo_A Uridine-cytidine kinase 98.3 7.5E-07 2.6E-11 62.3 4.2 29 5-33 24-52 (245)
152 3eie_A Vacuolar protein sortin 98.3 6.5E-06 2.2E-10 59.7 9.3 27 6-32 51-77 (322)
153 3e70_C DPA, signal recognition 98.3 7.8E-07 2.7E-11 65.0 4.4 42 4-45 127-168 (328)
154 1u94_A RECA protein, recombina 98.3 2.1E-05 7.3E-10 58.0 12.0 38 6-43 63-100 (356)
155 4a1f_A DNAB helicase, replicat 98.3 1.1E-05 3.9E-10 59.1 10.4 38 6-43 46-83 (338)
156 1yrb_A ATP(GTP)binding protein 98.2 1.4E-06 4.8E-11 61.1 5.4 40 4-44 12-51 (262)
157 3czq_A Putative polyphosphate 98.2 5.9E-06 2E-10 59.6 8.6 109 5-139 85-212 (304)
158 2kjq_A DNAA-related protein; s 98.2 1.2E-06 4.3E-11 56.8 4.5 37 6-42 36-72 (149)
159 1jbk_A CLPB protein; beta barr 98.2 1.1E-06 3.9E-11 58.0 4.4 28 5-32 42-69 (195)
160 1xp8_A RECA protein, recombina 98.2 1.5E-05 5.1E-10 59.1 10.7 39 6-44 74-112 (366)
161 3aez_A Pantothenate kinase; tr 98.2 2.4E-06 8.2E-11 62.0 6.1 42 4-45 88-131 (312)
162 2ehv_A Hypothetical protein PH 98.2 9.8E-06 3.3E-10 56.1 9.1 23 6-28 30-52 (251)
163 1rj9_A FTSY, signal recognitio 98.2 1.1E-06 3.8E-11 63.6 4.3 40 5-44 101-140 (304)
164 3b9q_A Chloroplast SRP recepto 98.2 1.3E-06 4.3E-11 63.2 4.3 41 5-45 99-139 (302)
165 1p5z_B DCK, deoxycytidine kina 98.2 3.6E-07 1.2E-11 64.5 1.1 27 5-31 23-49 (263)
166 2orw_A Thymidine kinase; TMTK, 98.2 1.7E-06 5.9E-11 58.1 4.3 36 5-40 2-37 (184)
167 2og2_A Putative signal recogni 98.2 1.5E-06 5.3E-11 64.2 4.3 43 4-46 155-197 (359)
168 1lvg_A Guanylate kinase, GMP k 98.2 1.2E-06 4E-11 59.5 3.2 26 6-31 4-29 (198)
169 2z4s_A Chromosomal replication 98.2 2E-05 6.9E-10 59.7 10.3 40 6-45 130-171 (440)
170 3bgw_A DNAB-like replicative h 98.1 5.1E-05 1.7E-09 57.6 12.5 38 6-43 197-234 (444)
171 2qz4_A Paraplegin; AAA+, SPG7, 98.1 1.3E-06 4.4E-11 61.2 3.5 28 5-32 38-65 (262)
172 2qp9_X Vacuolar protein sortin 98.1 8.9E-06 3.1E-10 59.9 8.1 27 6-32 84-110 (355)
173 3p32_A Probable GTPase RV1496/ 98.1 2.7E-06 9.1E-11 62.7 5.1 41 4-44 77-117 (355)
174 2f1r_A Molybdopterin-guanine d 98.1 8.9E-07 3E-11 58.9 2.3 36 7-42 3-38 (171)
175 2p65_A Hypothetical protein PF 98.1 1.9E-06 6.6E-11 56.8 3.9 28 5-32 42-69 (187)
176 4fcw_A Chaperone protein CLPB; 98.1 2.8E-06 9.4E-11 61.0 4.9 37 7-43 48-84 (311)
177 1lv7_A FTSH; alpha/beta domain 98.1 1.5E-06 5.2E-11 60.9 3.4 27 6-32 45-71 (257)
178 1l8q_A Chromosomal replication 98.1 3.2E-06 1.1E-10 61.2 5.2 40 6-45 37-76 (324)
179 1ye8_A Protein THEP1, hypothet 98.1 2E-06 6.8E-11 57.5 3.7 24 8-31 2-25 (178)
180 2z43_A DNA repair and recombin 98.1 6.9E-05 2.4E-09 54.5 12.2 39 6-44 107-151 (324)
181 3cf0_A Transitional endoplasmi 98.1 1.2E-06 4E-11 63.1 2.7 28 5-32 48-75 (301)
182 1tue_A Replication protein E1; 98.1 1.6E-06 5.3E-11 59.4 3.1 26 6-31 58-83 (212)
183 2v1u_A Cell division control p 98.1 5.2E-05 1.8E-09 55.5 11.5 28 4-31 42-69 (387)
184 1s96_A Guanylate kinase, GMP k 98.1 2E-06 6.8E-11 59.4 3.6 27 5-31 15-41 (219)
185 3hws_A ATP-dependent CLP prote 98.1 1.4E-06 4.7E-11 64.3 3.0 29 5-33 50-78 (363)
186 3cf2_A TER ATPase, transitiona 98.1 8.6E-06 2.9E-10 65.9 7.6 28 5-32 237-264 (806)
187 2qgz_A Helicase loader, putati 98.1 4.7E-06 1.6E-10 60.3 5.5 42 6-47 152-194 (308)
188 1d2n_A N-ethylmaleimide-sensit 98.1 2.3E-06 7.8E-11 60.5 3.6 30 4-33 62-91 (272)
189 3d8b_A Fidgetin-like protein 1 98.1 1.4E-05 4.7E-10 58.9 7.9 27 5-31 116-142 (357)
190 1g41_A Heat shock protein HSLU 98.1 1.6E-06 5.6E-11 65.7 3.0 31 5-35 49-79 (444)
191 2zts_A Putative uncharacterize 98.1 5E-05 1.7E-09 52.4 10.3 38 6-43 30-68 (251)
192 3b9p_A CG5977-PA, isoform A; A 98.1 1.6E-06 5.6E-11 61.9 2.8 27 6-32 54-80 (297)
193 2ga8_A Hypothetical 39.9 kDa p 98.1 2E-06 7E-11 63.4 3.3 29 6-34 24-52 (359)
194 3lnc_A Guanylate kinase, GMP k 98.1 1.2E-06 4.2E-11 60.5 2.1 26 5-30 26-52 (231)
195 2q6t_A DNAB replication FORK h 98.1 0.00011 3.6E-09 55.7 12.8 113 6-124 200-318 (444)
196 2vhj_A Ntpase P4, P4; non- hyd 98.1 1.4E-05 4.7E-10 58.3 7.5 23 7-29 124-146 (331)
197 1jr3_A DNA polymerase III subu 98.1 1.6E-05 5.5E-10 58.2 8.0 28 6-33 38-65 (373)
198 1a5t_A Delta prime, HOLB; zinc 98.1 4.4E-05 1.5E-09 55.7 10.1 29 6-34 24-52 (334)
199 4dzz_A Plasmid partitioning pr 98.0 3.7E-05 1.3E-09 51.7 9.1 38 7-44 3-40 (206)
200 2qmh_A HPR kinase/phosphorylas 98.0 4E-06 1.4E-10 57.0 4.0 26 6-31 34-59 (205)
201 2x8a_A Nuclear valosin-contain 98.0 2.7E-06 9.2E-11 60.6 3.3 25 8-32 46-70 (274)
202 1in4_A RUVB, holliday junction 98.0 3E-06 1E-10 61.8 3.6 27 6-32 51-77 (334)
203 2r62_A Cell division protease 98.0 1.7E-06 5.9E-11 60.9 2.2 30 6-35 44-73 (268)
204 3czp_A Putative polyphosphate 98.0 4.2E-05 1.5E-09 58.8 10.0 111 4-140 41-170 (500)
205 2w0m_A SSO2452; RECA, SSPF, un 98.0 3.9E-06 1.3E-10 57.4 3.9 38 6-43 23-60 (235)
206 3lda_A DNA repair protein RAD5 98.0 0.00016 5.5E-09 54.2 12.8 24 6-29 178-201 (400)
207 1z6g_A Guanylate kinase; struc 98.0 2.9E-06 9.9E-11 58.4 3.1 26 5-30 22-47 (218)
208 2dyk_A GTP-binding protein; GT 98.0 3.7E-06 1.3E-10 54.2 3.4 41 88-129 81-121 (161)
209 3n70_A Transport activator; si 98.0 3.6E-06 1.2E-10 54.2 3.2 27 6-32 24-50 (145)
210 1ofh_A ATP-dependent HSL prote 98.0 2.8E-06 9.5E-11 60.7 2.9 28 5-32 49-76 (310)
211 3rhf_A Putative polyphosphate 98.0 5.4E-05 1.9E-09 54.0 9.5 110 5-140 74-202 (289)
212 2dr3_A UPF0273 protein PH0284; 98.0 5.1E-06 1.8E-10 57.4 4.2 38 6-43 23-60 (247)
213 1xwi_A SKD1 protein; VPS4B, AA 98.0 3.9E-06 1.3E-10 61.1 3.6 25 6-30 45-69 (322)
214 3u61_B DNA polymerase accessor 98.0 1.4E-05 4.8E-10 57.8 6.5 27 5-31 47-73 (324)
215 2chg_A Replication factor C sm 98.0 3.6E-06 1.2E-10 56.9 3.1 26 8-33 40-65 (226)
216 1um8_A ATP-dependent CLP prote 98.0 3E-06 1E-10 62.7 3.0 27 6-32 72-98 (376)
217 1ls1_A Signal recognition part 98.0 5.9E-06 2E-10 59.5 4.4 42 5-46 97-138 (295)
218 1znw_A Guanylate kinase, GMP k 98.0 4.5E-06 1.5E-10 56.8 3.5 26 6-31 20-45 (207)
219 2b8t_A Thymidine kinase; deoxy 98.0 9.2E-06 3.1E-10 56.2 4.9 37 5-41 11-47 (223)
220 2r2a_A Uncharacterized protein 98.0 7.7E-06 2.6E-10 55.7 4.4 25 5-29 4-28 (199)
221 1q57_A DNA primase/helicase; d 98.0 5.8E-05 2E-09 58.0 9.6 38 6-43 242-280 (503)
222 1ixz_A ATP-dependent metallopr 97.9 7.4E-06 2.5E-10 57.3 4.1 24 8-31 51-74 (254)
223 1htw_A HI0065; nucleotide-bind 97.9 1E-05 3.5E-10 53.0 4.4 27 5-31 32-58 (158)
224 3uk6_A RUVB-like 2; hexameric 97.9 7.9E-06 2.7E-10 59.9 4.2 27 6-32 70-96 (368)
225 4dcu_A GTP-binding protein ENG 97.9 1.2E-05 4.1E-10 61.1 5.2 41 88-129 104-144 (456)
226 2bjv_A PSP operon transcriptio 97.9 9.7E-06 3.3E-10 57.0 4.3 39 6-44 29-67 (265)
227 2c9o_A RUVB-like 1; hexameric 97.9 8.2E-06 2.8E-10 62.0 4.2 26 6-31 63-88 (456)
228 1cr0_A DNA primase/helicase; R 97.9 1.1E-05 3.8E-10 57.7 4.6 37 6-42 35-72 (296)
229 3pfi_A Holliday junction ATP-d 97.9 5.7E-06 1.9E-10 60.1 3.1 28 6-33 55-82 (338)
230 2www_A Methylmalonic aciduria 97.9 1.2E-05 4E-10 59.2 4.7 38 6-43 74-111 (349)
231 2wsm_A Hydrogenase expression/ 97.9 1.6E-05 5.5E-10 54.2 5.1 37 5-42 29-65 (221)
232 3iev_A GTP-binding protein ERA 97.9 1.1E-05 3.8E-10 58.3 4.5 27 2-28 6-32 (308)
233 2r8r_A Sensor protein; KDPD, P 97.9 1.5E-05 5.1E-10 55.3 4.8 39 6-44 6-44 (228)
234 4a74_A DNA repair and recombin 97.9 8.3E-06 2.8E-10 55.8 3.6 25 6-30 25-49 (231)
235 3io5_A Recombination and repai 97.9 3E-05 1E-09 56.4 6.5 36 7-42 29-66 (333)
236 1xx6_A Thymidine kinase; NESG, 97.9 1.7E-05 5.9E-10 53.6 5.0 37 5-41 7-43 (191)
237 1svm_A Large T antigen; AAA+ f 97.9 9.9E-06 3.4E-10 60.3 4.1 27 5-31 168-194 (377)
238 2r6a_A DNAB helicase, replicat 97.9 0.00018 6E-09 54.7 10.9 38 6-43 203-241 (454)
239 2eyu_A Twitching motility prot 97.9 1.3E-05 4.3E-10 56.8 4.2 27 5-31 24-50 (261)
240 2p67_A LAO/AO transport system 97.9 1.4E-05 4.8E-10 58.6 4.6 40 5-44 55-94 (341)
241 3czp_A Putative polyphosphate 97.9 8.7E-05 3E-09 57.1 9.0 110 5-140 299-427 (500)
242 1iy2_A ATP-dependent metallopr 97.9 1.3E-05 4.5E-10 56.8 4.2 24 8-31 75-98 (278)
243 2qby_A CDC6 homolog 1, cell di 97.8 1.1E-05 3.6E-10 59.2 3.7 38 5-42 44-84 (386)
244 2qby_B CDC6 homolog 3, cell di 97.8 1.5E-05 5.2E-10 58.6 4.5 26 5-30 44-69 (384)
245 2vp4_A Deoxynucleoside kinase; 97.8 6.4E-06 2.2E-10 57.0 2.3 25 5-29 19-43 (230)
246 2qm8_A GTPase/ATPase; G protei 97.8 1.7E-05 5.8E-10 58.1 4.6 39 5-43 54-92 (337)
247 2v9p_A Replication protein E1; 97.8 1.3E-05 4.5E-10 58.0 3.9 26 5-30 125-150 (305)
248 2hjg_A GTP-binding protein ENG 97.8 2.6E-05 8.9E-10 58.9 5.6 41 89-130 85-125 (436)
249 2ce7_A Cell division protein F 97.8 1.3E-05 4.3E-10 61.4 3.8 28 6-33 49-76 (476)
250 1sxj_C Activator 1 40 kDa subu 97.8 7.5E-06 2.6E-10 59.7 2.5 24 9-32 49-72 (340)
251 2i3b_A HCR-ntpase, human cance 97.8 1.2E-05 4.1E-10 54.3 3.2 30 8-37 3-32 (189)
252 1fnn_A CDC6P, cell division co 97.8 2.6E-05 8.8E-10 57.3 5.2 34 8-41 46-80 (389)
253 1nrj_B SR-beta, signal recogni 97.8 0.00039 1.3E-08 47.0 10.8 24 6-29 12-35 (218)
254 3hu3_A Transitional endoplasmi 97.8 8.6E-05 2.9E-09 57.0 8.1 27 5-31 237-263 (489)
255 1c9k_A COBU, adenosylcobinamid 97.8 1.2E-05 4E-10 53.9 2.7 22 8-29 1-22 (180)
256 3vfd_A Spastin; ATPase, microt 97.8 1E-05 3.6E-10 60.1 2.7 28 6-33 148-175 (389)
257 2zan_A Vacuolar protein sortin 97.8 1.5E-05 5.1E-10 60.4 3.5 25 6-30 167-191 (444)
258 1sxj_A Activator 1 95 kDa subu 97.8 1.7E-05 5.9E-10 61.1 3.9 27 6-32 77-103 (516)
259 1n0w_A DNA repair protein RAD5 97.8 1.4E-05 4.8E-10 55.1 3.1 24 6-29 24-47 (243)
260 1sxj_D Activator 1 41 kDa subu 97.8 1.9E-05 6.5E-10 57.4 3.9 24 8-31 60-83 (353)
261 3te6_A Regulatory protein SIR3 97.8 7.4E-06 2.5E-10 59.6 1.7 28 4-31 43-70 (318)
262 2wjg_A FEOB, ferrous iron tran 97.8 1.9E-05 6.6E-10 52.2 3.5 27 2-28 3-29 (188)
263 1u0j_A DNA replication protein 97.7 1.7E-05 5.8E-10 56.3 3.3 26 5-30 103-128 (267)
264 1sxj_E Activator 1 40 kDa subu 97.7 1.8E-05 6E-10 57.8 3.5 25 6-31 37-61 (354)
265 1dek_A Deoxynucleoside monopho 97.7 1.9E-05 6.6E-10 55.2 3.5 27 7-33 2-28 (241)
266 3tif_A Uncharacterized ABC tra 97.7 1.6E-05 5.3E-10 55.4 3.0 25 6-30 31-55 (235)
267 3m6a_A ATP-dependent protease 97.7 2E-05 6.9E-10 61.2 3.9 28 5-32 107-134 (543)
268 3ug7_A Arsenical pump-driving 97.7 3.5E-05 1.2E-09 56.6 5.0 41 4-44 24-64 (349)
269 1hqc_A RUVB; extended AAA-ATPa 97.7 1.9E-05 6.6E-10 56.8 3.4 27 6-32 38-64 (324)
270 3zq6_A Putative arsenical pump 97.7 3.3E-05 1.1E-09 56.2 4.5 39 6-44 14-52 (324)
271 2ewv_A Twitching motility prot 97.7 3E-05 1E-09 57.6 4.2 27 5-31 135-161 (372)
272 3pvs_A Replication-associated 97.7 2.1E-05 7.1E-10 59.8 3.4 26 7-32 51-76 (447)
273 3iqw_A Tail-anchored protein t 97.7 4.9E-05 1.7E-09 55.6 5.2 39 5-43 15-53 (334)
274 2hf9_A Probable hydrogenase ni 97.7 5.2E-05 1.8E-09 51.8 5.1 27 5-31 37-63 (226)
275 2pcj_A ABC transporter, lipopr 97.7 1.9E-05 6.7E-10 54.5 2.9 25 6-30 30-54 (224)
276 3pxi_A Negative regulator of g 97.7 5.3E-05 1.8E-09 60.9 5.8 39 8-46 523-561 (758)
277 2wji_A Ferrous iron transport 97.7 2.5E-05 8.7E-10 50.8 3.3 25 4-28 1-25 (165)
278 2onk_A Molybdate/tungstate ABC 97.7 2.4E-05 8.3E-10 54.7 3.4 24 7-30 25-48 (240)
279 3cmw_A Protein RECA, recombina 97.7 0.0002 7E-09 62.0 9.5 39 6-44 383-421 (1706)
280 2r44_A Uncharacterized protein 97.7 1.4E-05 4.8E-10 58.0 2.2 26 8-33 48-73 (331)
281 3tqf_A HPR(Ser) kinase; transf 97.7 2.2E-05 7.4E-10 52.3 2.9 23 7-29 17-39 (181)
282 3b85_A Phosphate starvation-in 97.7 2.2E-05 7.5E-10 53.7 3.0 23 7-29 23-45 (208)
283 1g8p_A Magnesium-chelatase 38 97.7 1.4E-05 4.7E-10 58.2 2.1 24 8-31 47-70 (350)
284 3cmw_A Protein RECA, recombina 97.7 0.00021 7.3E-09 61.9 9.5 39 6-44 732-770 (1706)
285 3end_A Light-independent proto 97.7 4.2E-05 1.4E-09 54.9 4.6 40 5-44 40-79 (307)
286 2cbz_A Multidrug resistance-as 97.7 2.3E-05 7.8E-10 54.6 3.0 25 6-30 31-55 (237)
287 3cf2_A TER ATPase, transitiona 97.7 3.2E-05 1.1E-09 62.5 4.2 28 6-33 511-538 (806)
288 2ph1_A Nucleotide-binding prot 97.7 3.7E-05 1.2E-09 54.1 4.0 45 2-46 15-59 (262)
289 1nlf_A Regulatory protein REPA 97.7 2.9E-05 1E-09 55.1 3.5 26 6-31 30-55 (279)
290 3co5_A Putative two-component 97.7 1.2E-05 4.1E-10 51.6 1.4 24 7-30 28-51 (143)
291 3jvv_A Twitching mobility prot 97.7 3.6E-05 1.2E-09 56.8 4.0 27 6-32 123-149 (356)
292 2woo_A ATPase GET3; tail-ancho 97.7 5.5E-05 1.9E-09 55.2 4.9 41 5-45 18-58 (329)
293 2dhr_A FTSH; AAA+ protein, hex 97.7 2.9E-05 1E-09 59.7 3.6 26 6-31 64-89 (499)
294 3pxg_A Negative regulator of g 97.6 3.1E-05 1.1E-09 59.1 3.6 27 6-32 201-227 (468)
295 3cmu_A Protein RECA, recombina 97.6 0.00027 9.2E-09 62.1 9.5 40 5-44 382-421 (2050)
296 3gfo_A Cobalt import ATP-bindi 97.6 2.3E-05 8E-10 55.9 2.6 25 6-30 34-58 (275)
297 1mv5_A LMRA, multidrug resista 97.6 3E-05 1E-09 54.2 3.2 25 6-30 28-52 (243)
298 4g1u_C Hemin import ATP-bindin 97.6 2.7E-05 9.3E-10 55.2 2.9 25 6-30 37-61 (266)
299 2chq_A Replication factor C sm 97.6 4E-05 1.4E-09 54.8 3.9 23 9-31 41-63 (319)
300 2j9r_A Thymidine kinase; TK1, 97.6 7.6E-05 2.6E-09 51.3 5.0 37 5-41 27-63 (214)
301 3pqc_A Probable GTP-binding pr 97.6 0.00021 7E-09 47.2 7.1 24 6-29 23-46 (195)
302 1iqp_A RFCS; clamp loader, ext 97.6 3.3E-05 1.1E-09 55.4 3.4 24 8-31 48-71 (327)
303 3cmu_A Protein RECA, recombina 97.6 0.00063 2.1E-08 59.8 11.6 40 5-44 1426-1465(2050)
304 1b0u_A Histidine permease; ABC 97.6 2.9E-05 1E-09 54.9 3.0 25 6-30 32-56 (262)
305 1ojl_A Transcriptional regulat 97.6 4.6E-05 1.6E-09 55.0 4.1 38 6-43 25-62 (304)
306 2d2e_A SUFC protein; ABC-ATPas 97.6 3.7E-05 1.3E-09 53.9 3.4 24 6-29 29-52 (250)
307 1p9r_A General secretion pathw 97.6 8.5E-05 2.9E-09 56.0 5.5 28 5-32 166-193 (418)
308 2olj_A Amino acid ABC transpor 97.6 3.2E-05 1.1E-09 54.8 3.0 25 6-30 50-74 (263)
309 2ff7_A Alpha-hemolysin translo 97.6 3.1E-05 1.1E-09 54.3 2.9 25 6-30 35-59 (247)
310 2zu0_C Probable ATP-dependent 97.6 4.2E-05 1.4E-09 54.3 3.5 24 6-29 46-69 (267)
311 2ce2_X GTPase HRAS; signaling 97.6 4.6E-05 1.6E-09 48.9 3.5 25 5-29 2-26 (166)
312 1ypw_A Transitional endoplasmi 97.6 2.4E-05 8.2E-10 63.5 2.5 28 5-32 237-264 (806)
313 2ixe_A Antigen peptide transpo 97.6 3.5E-05 1.2E-09 54.8 3.0 25 6-30 45-69 (271)
314 2ghi_A Transport protein; mult 97.6 3.5E-05 1.2E-09 54.4 3.0 25 6-30 46-70 (260)
315 1ji0_A ABC transporter; ATP bi 97.6 3.4E-05 1.2E-09 53.8 2.9 25 6-30 32-56 (240)
316 1p6x_A Thymidine kinase; P-loo 97.6 2.7E-05 9.2E-10 57.0 2.4 30 4-33 5-34 (334)
317 1nij_A Hypothetical protein YJ 97.6 4.5E-05 1.5E-09 55.4 3.5 24 7-30 5-28 (318)
318 1g6h_A High-affinity branched- 97.6 3.5E-05 1.2E-09 54.3 2.9 25 6-30 33-57 (257)
319 1kao_A RAP2A; GTP-binding prot 97.6 5.1E-05 1.8E-09 48.7 3.5 26 4-29 1-26 (167)
320 2pze_A Cystic fibrosis transme 97.6 3.6E-05 1.2E-09 53.3 2.9 24 7-30 35-58 (229)
321 1wf3_A GTP-binding protein; GT 97.6 7.6E-05 2.6E-09 53.8 4.7 23 6-28 7-29 (301)
322 1sxj_B Activator 1 37 kDa subu 97.6 5.7E-05 2E-09 54.1 4.0 23 9-31 45-67 (323)
323 1vpl_A ABC transporter, ATP-bi 97.6 3.8E-05 1.3E-09 54.2 3.0 25 6-30 41-65 (256)
324 3clv_A RAB5 protein, putative; 97.6 7.4E-05 2.5E-09 49.6 4.3 28 2-29 3-30 (208)
325 1sgw_A Putative ABC transporte 97.6 3.1E-05 1.1E-09 53.2 2.4 25 6-30 35-59 (214)
326 3ea0_A ATPase, para family; al 97.6 9.9E-05 3.4E-09 51.0 5.0 42 4-45 3-45 (245)
327 3cio_A ETK, tyrosine-protein k 97.6 9.4E-05 3.2E-09 53.2 4.9 40 5-44 103-143 (299)
328 3t5g_A GTP-binding protein RHE 97.6 4E-05 1.4E-09 50.3 2.8 28 1-28 1-28 (181)
329 1ihu_A Arsenical pump-driving 97.6 6.6E-05 2.2E-09 58.7 4.4 41 4-44 6-46 (589)
330 1lw7_A Transcriptional regulat 97.6 3.9E-05 1.3E-09 56.6 3.0 26 6-31 170-195 (365)
331 2yz2_A Putative ABC transporte 97.6 4.1E-05 1.4E-09 54.2 3.0 25 6-30 33-57 (266)
332 1v5w_A DMC1, meiotic recombina 97.5 9.4E-05 3.2E-09 54.2 4.9 38 6-43 122-165 (343)
333 1g3q_A MIND ATPase, cell divis 97.5 6.8E-05 2.3E-09 51.6 3.9 40 5-44 2-41 (237)
334 2qi9_C Vitamin B12 import ATP- 97.5 4.3E-05 1.5E-09 53.7 2.9 25 6-30 26-50 (249)
335 2gza_A Type IV secretion syste 97.5 3.2E-05 1.1E-09 57.1 2.3 26 6-31 175-200 (361)
336 3t1o_A Gliding protein MGLA; G 97.5 0.00024 8.3E-09 46.9 6.4 24 7-30 15-38 (198)
337 1pzn_A RAD51, DNA repair and r 97.5 5.1E-05 1.8E-09 55.8 3.3 25 6-30 131-155 (349)
338 3io3_A DEHA2D07832P; chaperone 97.5 8.6E-05 2.9E-09 54.6 4.5 39 5-43 17-57 (348)
339 2woj_A ATPase GET3; tail-ancho 97.5 0.00011 3.7E-09 54.2 5.0 40 5-44 17-58 (354)
340 1ypw_A Transitional endoplasmi 97.5 3.6E-05 1.2E-09 62.4 2.7 30 6-35 511-540 (806)
341 3kjh_A CO dehydrogenase/acetyl 97.5 5.8E-05 2E-09 52.2 3.3 36 9-44 3-38 (254)
342 2ihy_A ABC transporter, ATP-bi 97.5 4.7E-05 1.6E-09 54.4 2.9 25 6-30 47-71 (279)
343 1of1_A Thymidine kinase; trans 97.5 3.5E-05 1.2E-09 57.2 2.3 31 4-34 47-77 (376)
344 1hyq_A MIND, cell division inh 97.5 8.8E-05 3E-09 51.9 4.3 40 5-44 2-41 (263)
345 2nq2_C Hypothetical ABC transp 97.5 4.8E-05 1.6E-09 53.6 2.8 25 6-30 31-55 (253)
346 3kta_A Chromosome segregation 97.5 7.3E-05 2.5E-09 49.4 3.5 26 6-31 26-51 (182)
347 3sop_A Neuronal-specific septi 97.5 6.9E-05 2.4E-09 53.2 3.6 24 7-30 3-26 (270)
348 3fvq_A Fe(3+) IONS import ATP- 97.5 6.5E-05 2.2E-09 55.5 3.5 25 6-30 30-54 (359)
349 1cp2_A CP2, nitrogenase iron p 97.5 0.00011 3.9E-09 51.5 4.6 38 7-44 2-39 (269)
350 2afh_E Nitrogenase iron protei 97.5 0.00011 3.6E-09 52.4 4.5 38 7-44 3-40 (289)
351 3q9l_A Septum site-determining 97.5 8E-05 2.8E-09 51.9 3.8 40 5-44 2-41 (260)
352 3bfv_A CAPA1, CAPB2, membrane 97.5 0.00013 4.5E-09 51.7 4.9 39 6-44 82-121 (271)
353 1u8z_A RAS-related protein RAL 97.5 7.3E-05 2.5E-09 48.1 3.3 25 5-29 3-27 (168)
354 3con_A GTPase NRAS; structural 97.5 6.4E-05 2.2E-09 49.7 3.1 26 4-29 19-44 (190)
355 3e2i_A Thymidine kinase; Zn-bi 97.5 0.00029 1E-08 48.4 6.4 37 5-41 27-63 (219)
356 2orv_A Thymidine kinase; TP4A 97.5 0.00015 5.3E-09 50.3 5.0 38 4-41 17-54 (234)
357 1c1y_A RAS-related protein RAP 97.5 7.5E-05 2.6E-09 48.1 3.3 25 5-29 2-26 (167)
358 1svi_A GTP-binding protein YSX 97.5 9.2E-05 3.1E-09 49.1 3.8 24 5-28 22-45 (195)
359 1oix_A RAS-related protein RAB 97.5 7.2E-05 2.4E-09 50.0 3.3 23 7-29 30-52 (191)
360 2iwr_A Centaurin gamma 1; ANK 97.5 6.4E-05 2.2E-09 49.2 3.0 29 1-29 2-30 (178)
361 4dhe_A Probable GTP-binding pr 97.5 7.9E-05 2.7E-09 50.6 3.5 24 6-29 29-52 (223)
362 3e1s_A Exodeoxyribonuclease V, 97.5 0.0001 3.5E-09 57.7 4.4 35 6-40 204-238 (574)
363 1pui_A ENGB, probable GTP-bind 97.5 4.9E-05 1.7E-09 51.2 2.3 23 5-27 25-47 (210)
364 3pxi_A Negative regulator of g 97.5 9E-05 3.1E-09 59.6 4.2 27 5-31 200-226 (758)
365 2pjz_A Hypothetical protein ST 97.5 5.6E-05 1.9E-09 53.5 2.6 23 7-29 31-53 (263)
366 3nbx_X ATPase RAVA; AAA+ ATPas 97.5 3.3E-05 1.1E-09 59.4 1.5 25 7-31 42-66 (500)
367 3bwd_D RAC-like GTP-binding pr 97.5 9.6E-05 3.3E-09 48.4 3.6 28 2-29 4-31 (182)
368 2y8e_A RAB-protein 6, GH09086P 97.4 7.3E-05 2.5E-09 48.7 2.9 24 5-28 13-36 (179)
369 3rlf_A Maltose/maltodextrin im 97.4 8.4E-05 2.9E-09 55.3 3.5 25 6-30 29-53 (381)
370 2yyz_A Sugar ABC transporter, 97.4 8.7E-05 3E-09 54.9 3.5 25 6-30 29-53 (359)
371 3tui_C Methionine import ATP-b 97.4 8.8E-05 3E-09 54.9 3.5 25 6-30 54-78 (366)
372 1z47_A CYSA, putative ABC-tran 97.4 7.6E-05 2.6E-09 55.1 3.2 24 7-30 42-65 (355)
373 2atv_A RERG, RAS-like estrogen 97.4 0.00011 3.7E-09 49.0 3.7 26 4-29 26-51 (196)
374 3k9g_A PF-32 protein; ssgcid, 97.4 0.0001 3.5E-09 51.7 3.7 38 7-45 29-66 (267)
375 2hxs_A RAB-26, RAS-related pro 97.4 0.0001 3.6E-09 48.0 3.5 25 4-28 4-28 (178)
376 2f9l_A RAB11B, member RAS onco 97.4 7.7E-05 2.6E-09 50.0 2.9 23 7-29 6-28 (199)
377 2it1_A 362AA long hypothetical 97.4 9.1E-05 3.1E-09 54.8 3.5 25 6-30 29-53 (362)
378 2gno_A DNA polymerase III, gam 97.4 0.0005 1.7E-08 49.6 7.3 25 6-30 18-42 (305)
379 2fn4_A P23, RAS-related protei 97.4 0.00012 4E-09 47.8 3.7 24 6-29 9-32 (181)
380 2gj8_A MNME, tRNA modification 97.4 0.0001 3.5E-09 48.3 3.4 25 5-29 3-27 (172)
381 2bbs_A Cystic fibrosis transme 97.4 8.2E-05 2.8E-09 53.4 3.0 25 6-30 64-88 (290)
382 3nh6_A ATP-binding cassette SU 97.4 4.6E-05 1.6E-09 55.2 1.6 25 6-30 80-104 (306)
383 1v43_A Sugar-binding transport 97.4 0.0001 3.5E-09 54.7 3.5 25 6-30 37-61 (372)
384 2lkc_A Translation initiation 97.4 0.00013 4.4E-09 47.6 3.7 24 5-28 7-30 (178)
385 1e2k_A Thymidine kinase; trans 97.4 4.9E-05 1.7E-09 55.6 1.8 30 5-34 3-32 (331)
386 2ged_A SR-beta, signal recogni 97.4 0.00013 4.3E-09 48.4 3.7 25 5-29 47-71 (193)
387 3ice_A Transcription terminati 97.4 0.0015 5.2E-08 48.8 9.7 31 7-37 175-205 (422)
388 1z2a_A RAS-related protein RAB 97.4 0.00011 3.6E-09 47.4 3.2 25 5-29 4-28 (168)
389 1w5s_A Origin recognition comp 97.4 0.0001 3.5E-09 54.6 3.4 27 5-31 49-77 (412)
390 1g29_1 MALK, maltose transport 97.4 9.3E-05 3.2E-09 54.9 3.2 25 6-30 29-53 (372)
391 1qvr_A CLPB protein; coiled co 97.4 0.00011 3.6E-09 60.0 3.7 37 7-43 589-625 (854)
392 2nzj_A GTP-binding protein REM 97.4 0.00012 4.1E-09 47.5 3.3 24 5-28 3-26 (175)
393 1fzq_A ADP-ribosylation factor 97.4 0.00014 4.8E-09 48.0 3.6 25 4-28 14-38 (181)
394 2pt7_A CAG-ALFA; ATPase, prote 97.4 4.9E-05 1.7E-09 55.5 1.5 25 7-31 172-196 (330)
395 1r6b_X CLPA protein; AAA+, N-t 97.4 0.00011 3.8E-09 59.0 3.7 28 5-32 206-233 (758)
396 1ek0_A Protein (GTP-binding pr 97.4 0.00011 3.8E-09 47.3 3.1 24 6-29 3-26 (170)
397 3k1j_A LON protease, ATP-depen 97.4 0.00011 3.7E-09 57.7 3.5 27 7-33 61-87 (604)
398 1upt_A ARL1, ADP-ribosylation 97.4 0.00019 6.4E-09 46.4 4.1 24 5-28 6-29 (171)
399 1moz_A ARL1, ADP-ribosylation 97.4 0.0001 3.5E-09 48.3 2.9 24 4-27 16-39 (183)
400 3gd7_A Fusion complex of cysti 97.4 0.00012 4.1E-09 54.7 3.5 25 6-30 47-71 (390)
401 3k53_A Ferrous iron transport 97.4 0.00013 4.6E-09 51.5 3.6 25 5-29 2-26 (271)
402 1wcv_1 SOJ, segregation protei 97.4 9.1E-05 3.1E-09 51.9 2.7 43 3-45 3-46 (257)
403 3fwy_A Light-independent proto 97.4 0.0002 6.9E-09 51.9 4.6 39 5-43 47-85 (314)
404 1ky3_A GTP-binding protein YPT 97.4 0.00013 4.6E-09 47.5 3.4 24 6-29 8-31 (182)
405 3ihw_A Centg3; RAS, centaurin, 97.4 0.00016 5.5E-09 47.9 3.8 26 4-29 18-43 (184)
406 3oes_A GTPase rhebl1; small GT 97.3 0.00013 4.5E-09 48.8 3.3 24 6-29 24-47 (201)
407 1osn_A Thymidine kinase, VZV-T 97.3 6.7E-05 2.3E-09 55.0 1.9 31 4-34 10-41 (341)
408 2i1q_A DNA repair and recombin 97.3 0.00012 4.2E-09 53.0 3.3 24 6-29 98-121 (322)
409 1mky_A Probable GTP-binding pr 97.3 0.00062 2.1E-08 51.4 7.3 24 6-29 180-203 (439)
410 3upu_A ATP-dependent DNA helic 97.3 0.00019 6.6E-09 54.5 4.5 28 8-35 47-74 (459)
411 2zej_A Dardarin, leucine-rich 97.3 0.00011 3.7E-09 48.6 2.7 22 7-28 3-24 (184)
412 3d31_A Sulfate/molybdate ABC t 97.3 7.8E-05 2.7E-09 54.9 2.2 25 6-30 26-50 (348)
413 2oap_1 GSPE-2, type II secreti 97.3 7.4E-05 2.5E-09 57.7 2.1 26 6-31 260-285 (511)
414 1r6b_X CLPA protein; AAA+, N-t 97.3 0.00027 9.3E-09 56.8 5.4 25 7-31 489-513 (758)
415 2a9k_A RAS-related protein RAL 97.3 0.00014 4.7E-09 47.7 3.2 25 5-29 17-41 (187)
416 1r2q_A RAS-related protein RAB 97.3 0.00011 3.7E-09 47.4 2.6 24 5-28 5-28 (170)
417 3cwq_A Para family chromosome 97.3 0.00028 9.7E-09 48.0 4.6 38 7-45 2-39 (209)
418 1wms_A RAB-9, RAB9, RAS-relate 97.3 0.00014 4.8E-09 47.3 3.0 24 6-29 7-30 (177)
419 3q72_A GTP-binding protein RAD 97.3 0.00013 4.4E-09 47.0 2.7 21 7-27 3-23 (166)
420 2fna_A Conserved hypothetical 97.3 0.00017 5.9E-09 52.1 3.7 25 7-31 31-55 (357)
421 3q85_A GTP-binding protein REM 97.3 0.00014 4.9E-09 47.0 2.9 21 7-27 3-23 (169)
422 2j0v_A RAC-like GTP-binding pr 97.3 0.00021 7.2E-09 48.1 3.9 26 4-29 7-32 (212)
423 2erx_A GTP-binding protein DI- 97.3 0.00016 5.6E-09 46.6 3.2 23 6-28 3-25 (172)
424 2efe_B Small GTP-binding prote 97.3 0.00016 5.4E-09 47.3 3.2 24 6-29 12-35 (181)
425 1g16_A RAS-related protein SEC 97.3 0.00016 5.3E-09 46.7 3.1 23 6-28 3-25 (170)
426 2yv5_A YJEQ protein; hydrolase 97.3 0.00016 5.6E-09 52.0 3.4 24 6-30 165-188 (302)
427 4dsu_A GTPase KRAS, isoform 2B 97.3 0.00016 5.4E-09 47.6 3.1 25 5-29 3-27 (189)
428 3kkq_A RAS-related protein M-R 97.3 0.0002 6.7E-09 47.0 3.5 24 6-29 18-41 (183)
429 2rcn_A Probable GTPase ENGC; Y 97.3 0.00015 5E-09 53.6 3.2 24 7-30 216-239 (358)
430 2bov_A RAla, RAS-related prote 97.3 0.00018 6.2E-09 48.0 3.4 24 6-29 14-37 (206)
431 1z08_A RAS-related protein RAB 97.3 0.00017 5.8E-09 46.6 3.2 24 6-29 6-29 (170)
432 1tf7_A KAIC; homohexamer, hexa 97.3 0.00027 9.2E-09 54.6 4.7 36 6-41 281-316 (525)
433 1z0j_A RAB-22, RAS-related pro 97.3 0.00016 5.5E-09 46.6 3.0 24 6-29 6-29 (170)
434 2b6h_A ADP-ribosylation factor 97.3 0.00024 8.2E-09 47.4 3.9 24 4-27 27-50 (192)
435 2xj4_A MIPZ; replication, cell 97.3 0.00017 5.7E-09 51.4 3.2 38 7-44 6-43 (286)
436 3c5c_A RAS-like protein 12; GD 97.3 0.00019 6.7E-09 47.6 3.4 24 6-29 21-44 (187)
437 1mky_A Probable GTP-binding pr 97.3 0.00049 1.7E-08 52.0 5.9 21 8-28 3-23 (439)
438 3lxx_A GTPase IMAP family memb 97.3 0.00017 5.9E-09 49.8 3.2 23 6-28 29-51 (239)
439 2npi_A Protein CLP1; CLP1-PCF1 97.3 0.00013 4.4E-09 55.6 2.7 25 6-30 138-162 (460)
440 1ega_A Protein (GTP-binding pr 97.3 0.00016 5.6E-09 52.0 3.1 25 4-28 6-30 (301)
441 2p5s_A RAS and EF-hand domain 97.3 0.00022 7.7E-09 47.6 3.6 25 5-29 27-51 (199)
442 1m7b_A RND3/RHOE small GTP-bin 97.3 0.0002 6.9E-09 47.2 3.3 25 5-29 6-30 (184)
443 1oxx_K GLCV, glucose, ABC tran 97.3 8.1E-05 2.8E-09 54.9 1.5 25 6-30 31-55 (353)
444 3la6_A Tyrosine-protein kinase 97.3 0.00046 1.6E-08 49.4 5.4 39 7-45 94-132 (286)
445 1w4r_A Thymidine kinase; type 97.2 0.00042 1.4E-08 46.9 4.8 38 4-41 18-55 (195)
446 1mh1_A RAC1; GTP-binding, GTPa 97.2 0.0002 6.7E-09 47.0 3.2 25 4-28 3-27 (186)
447 2xtp_A GTPase IMAP family memb 97.2 0.00023 7.7E-09 49.8 3.6 24 5-28 21-44 (260)
448 1z0f_A RAB14, member RAS oncog 97.2 0.0002 6.9E-09 46.5 3.1 23 7-29 16-38 (179)
449 3tw8_B RAS-related protein RAB 97.2 0.00018 6E-09 46.9 2.8 21 7-27 10-30 (181)
450 1tq4_A IIGP1, interferon-induc 97.2 0.00021 7.2E-09 53.7 3.5 24 6-29 69-92 (413)
451 2qag_B Septin-6, protein NEDD5 97.2 0.0002 6.7E-09 54.1 3.3 21 9-29 45-65 (427)
452 2fv8_A H6, RHO-related GTP-bin 97.2 0.00017 5.9E-09 48.5 2.8 25 5-29 24-48 (207)
453 1z06_A RAS-related protein RAB 97.2 0.00023 7.9E-09 47.1 3.4 23 6-28 20-42 (189)
454 2qen_A Walker-type ATPase; unk 97.2 0.00022 7.6E-09 51.4 3.5 25 7-31 32-56 (350)
455 1qvr_A CLPB protein; coiled co 97.2 0.00017 5.9E-09 58.7 3.2 26 6-31 191-216 (854)
456 1f6b_A SAR1; gtpases, N-termin 97.2 0.00024 8.1E-09 47.7 3.4 23 5-27 24-46 (198)
457 1zj6_A ADP-ribosylation factor 97.2 0.0003 1E-08 46.5 3.8 25 4-28 14-38 (187)
458 4dcu_A GTP-binding protein ENG 97.2 0.00065 2.2E-08 51.5 6.1 40 87-127 278-317 (456)
459 2cxx_A Probable GTP-binding pr 97.2 0.0002 6.7E-09 47.2 2.9 21 8-28 3-23 (190)
460 2h17_A ADP-ribosylation factor 97.2 0.00023 7.8E-09 46.8 3.2 24 5-28 20-43 (181)
461 1m2o_B GTP-binding protein SAR 97.2 0.00024 8.2E-09 47.3 3.3 23 6-28 23-45 (190)
462 4ag6_A VIRB4 ATPase, type IV s 97.2 0.00033 1.1E-08 52.0 4.4 35 7-41 36-70 (392)
463 1r8s_A ADP-ribosylation factor 97.2 0.00025 8.4E-09 45.6 3.3 22 8-29 2-23 (164)
464 3bc1_A RAS-related protein RAB 97.2 0.00025 8.5E-09 46.7 3.4 22 7-28 12-33 (195)
465 2fh5_B SR-beta, signal recogni 97.2 0.00024 8.3E-09 47.9 3.3 25 5-29 6-30 (214)
466 2g6b_A RAS-related protein RAB 97.2 0.00024 8.4E-09 46.3 3.2 24 6-29 10-33 (180)
467 2bme_A RAB4A, RAS-related prot 97.2 0.00023 7.8E-09 46.8 3.1 23 7-29 11-33 (186)
468 3i8s_A Ferrous iron transport 97.2 0.00025 8.6E-09 50.3 3.5 25 4-28 1-25 (274)
469 1u0l_A Probable GTPase ENGC; p 97.2 0.00023 7.7E-09 51.2 3.2 24 6-29 169-192 (301)
470 1vg8_A RAS-related protein RAB 97.2 0.00027 9.1E-09 47.3 3.4 24 6-29 8-31 (207)
471 1ksh_A ARF-like protein 2; sma 97.2 0.00028 9.6E-09 46.4 3.4 25 4-28 16-40 (186)
472 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00031 1E-08 45.4 3.5 25 6-30 23-47 (149)
473 2gf0_A GTP-binding protein DI- 97.2 0.00036 1.2E-08 46.3 3.9 24 5-28 7-30 (199)
474 4bas_A ADP-ribosylation factor 97.2 0.00025 8.7E-09 47.0 3.1 23 6-28 17-39 (199)
475 2oil_A CATX-8, RAS-related pro 97.1 0.00028 9.7E-09 46.7 3.2 23 7-29 26-48 (193)
476 1tf7_A KAIC; homohexamer, hexa 97.1 0.00026 8.8E-09 54.7 3.3 21 6-26 39-59 (525)
477 2a5y_B CED-4; apoptosis; HET: 97.1 0.00035 1.2E-08 54.2 4.0 24 5-28 151-174 (549)
478 3lxw_A GTPase IMAP family memb 97.1 0.00028 9.4E-09 49.3 3.2 24 5-28 20-43 (247)
479 1g5t_A COB(I)alamin adenosyltr 97.1 0.013 4.5E-07 39.6 11.3 125 6-133 28-169 (196)
480 2oze_A ORF delta'; para, walke 97.1 0.00045 1.6E-08 49.2 4.3 40 7-46 36-77 (298)
481 2qu8_A Putative nucleolar GTP- 97.1 0.00036 1.2E-08 47.8 3.7 24 5-28 28-51 (228)
482 1z6t_A APAF-1, apoptotic prote 97.1 0.00033 1.1E-08 54.5 3.8 24 5-28 146-169 (591)
483 1knx_A Probable HPR(Ser) kinas 97.1 0.00019 6.6E-09 52.0 2.3 23 7-29 148-170 (312)
484 3fkq_A NTRC-like two-domain pr 97.1 0.00032 1.1E-08 51.9 3.6 38 6-43 143-181 (373)
485 4gzl_A RAS-related C3 botulinu 97.1 0.00037 1.3E-08 46.9 3.6 25 5-29 29-53 (204)
486 3a1s_A Iron(II) transport prot 97.1 0.00026 9E-09 49.8 2.9 25 4-28 3-27 (258)
487 1ko7_A HPR kinase/phosphatase; 97.1 0.00026 8.8E-09 51.4 2.9 23 7-29 145-167 (314)
488 2gf9_A RAS-related protein RAB 97.1 0.00031 1.1E-08 46.4 3.1 23 7-29 23-45 (189)
489 3cbq_A GTP-binding protein REM 97.1 0.00023 8E-09 47.6 2.5 21 7-27 24-44 (195)
490 3dz8_A RAS-related protein RAB 97.1 0.00034 1.1E-08 46.4 3.2 23 7-29 24-46 (191)
491 1ihu_A Arsenical pump-driving 97.1 0.00056 1.9E-08 53.5 4.9 41 4-44 325-365 (589)
492 3b5x_A Lipid A export ATP-bind 97.1 0.00031 1.1E-08 55.0 3.4 25 6-30 369-393 (582)
493 1zbd_A Rabphilin-3A; G protein 97.1 0.0003 1E-08 47.0 2.9 22 7-28 9-30 (203)
494 1x3s_A RAS-related protein RAB 97.1 0.00025 8.5E-09 46.9 2.5 24 6-29 15-38 (195)
495 3tkl_A RAS-related protein RAB 97.1 0.00031 1.1E-08 46.5 2.9 23 7-29 17-39 (196)
496 2j1l_A RHO-related GTP-binding 97.1 0.00035 1.2E-08 47.3 3.3 23 6-28 34-56 (214)
497 2fg5_A RAB-22B, RAS-related pr 97.1 0.00033 1.1E-08 46.5 3.1 24 6-29 23-46 (192)
498 1zd9_A ADP-ribosylation factor 97.1 0.00036 1.2E-08 46.2 3.2 23 7-29 23-45 (188)
499 2a5j_A RAS-related protein RAB 97.1 0.00038 1.3E-08 46.2 3.3 23 7-29 22-44 (191)
500 3reg_A RHO-like small GTPase; 97.1 0.00034 1.2E-08 46.4 3.1 24 6-29 23-46 (194)
No 1
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=99.91 E-value=2e-23 Score=161.07 Aligned_cols=135 Identities=40% Similarity=0.723 Sum_probs=113.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.+|+|+|+|||||||+|+.|++++++.++++.+|+.|++++.........++|+..+.+....++.++..++..+..+
T Consensus 34 ~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~~~~~f~~~~~~~~~~re~~~~~~l~~~~~~ 113 (520)
T 2axn_A 34 SPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYSSYNFFRPDNEEAMKVRKQCALAALRDVKSY 113 (520)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCccccccCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 56799999999999999999999999999999999999999888655333356777666666666666666667777777
Q ss_pred H-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 L-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+ ...|..+|+|+++...+.|+.+.+ +++++++.+++|++.|+++++++||+++++
T Consensus 114 L~~~~g~~VIvDat~~~~~~R~~~~~-~a~~~g~~v~~l~~~~~d~e~i~~ri~~r~ 169 (520)
T 2axn_A 114 LAKEGGQIAVFDATNTTRERRHMILH-FAKENDFKAFFIESVCDDPTVVASNIMEVK 169 (520)
T ss_dssp HHHSCCCEEEEESCCCSHHHHHHHHH-HHHHHTCEEEEEEEECCCHHHHHHHHHHHT
T ss_pred HHhcCCceEEecCCCCCHHHHHHHHH-HHHHcCCeEEEEEEeCChHHHHHHHHHhhh
Confidence 7 356889999999999999999999 999999999999999999999999986544
No 2
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=99.87 E-value=6.8e-21 Score=145.53 Aligned_cols=136 Identities=40% Similarity=0.682 Sum_probs=112.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.++.+|+|+|+|||||||+++.|++.+++.+++++.++.|.++....+.....++|+..+.+....+..++...+..+..
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~ 116 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRK 116 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34679999999999999999999999999999999999999887754432234667766665556666666666666666
Q ss_pred HH-hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WL-KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l-~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
++ ..+|..+|+|+++...+.|+.|.+ .+++.++.++++++.|++++++.+|+++.+
T Consensus 117 ~l~~~~G~~vV~D~tn~~~~~R~~~~~-~~~~~~~~vv~l~~~~~~~~~i~~r~~~~~ 173 (469)
T 1bif_A 117 FLSEEGGHVAVFDATNTTRERRAMIFN-FGEQNGYKTFFVESICVDPEVIAANIVQVK 173 (469)
T ss_dssp HHHTTCCSEEEEESCCCSHHHHHHHHH-HHHHHTCEEEEEEECCCCHHHHHHHHHHHT
T ss_pred HHHhCCCCEEEEeCCCCCHHHHHHHHH-HHHhcCCcEEEEEEECCCHHHHHHHHHHhh
Confidence 66 456889999999999999999999 999889999999999999999999998754
No 3
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=99.78 E-value=1.3e-17 Score=111.65 Aligned_cols=122 Identities=21% Similarity=0.233 Sum_probs=84.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH-HHccCCCCceeEehhhhhhhhhhhcCCC-CccccCchhhhhHHHHHHHHHHHH-H
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR-YLTWTDHKSKVFSVSAYRRKHLELYNSH-DIFRVDNTEGYNIRQLSAREAQED-A 81 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~-~l~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~ 81 (143)
+|.+|+|+|+|||||||+|+.|++ .++ ...++.|.++........+. ..+. .+..... ...... +
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~-----~~~i~~d~~r~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~~ 68 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPG-----FYNINRDDYRQSIMAHEERDEYKYT---KKKEGIV----TGMQFDTA 68 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTT-----EEEECHHHHHHHHTTSCCGGGCCCC---HHHHHHH----HHHHHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCC-----cEEecHHHHHHHhhCCCccchhhhc---hhhhhHH----HHHHHHHH
Confidence 468999999999999999999998 333 35566777766543210010 1121 1111111 112222 2
Q ss_pred HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+. ..+..+|+|+++.....++.|.+ +++.+++++.+|++.||.+++.+|+.+|.
T Consensus 69 ~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~~~~~~R~~~R~ 127 (181)
T 1ly1_A 69 KSILYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (181)
T ss_dssp HHHHTSCSSCCEEEECSCCCSHHHHHHHHH-HHHHHTCEEEEEECCCCHHHHHHHHTTCG
T ss_pred HHHHhhccCCCeEEEeCCCCCHHHHHHHHH-HHHHcCCCEEEEEEeCCHHHHHHHHhccc
Confidence 33331 45789999999998888999998 88888999888999999999999998886
No 4
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.74 E-value=4.9e-17 Score=115.57 Aligned_cols=119 Identities=20% Similarity=0.289 Sum_probs=84.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
++.+|+|+|+|||||||+|+.|++.+...++....++.|.++..... |...... ..+. .. ...+...
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~-------~~~~~e~--~~~~-~~---~~~i~~~ 69 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPV-------WKEKYEE--FIKK-ST---YRLIDSA 69 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSS-------CCGGGHH--HHHH-HH---HHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhh-------hhHHHHH--HHHH-HH---HHHHHHH
Confidence 35799999999999999999999987655554444577776543211 3221111 1111 11 1112223
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+. . ..+|+|+++...+.++.+.+ +++..+.+..+|++.||.+++.+|+.+|.
T Consensus 70 l~-~-~~vIiD~~~~~~~~~~~l~~-~a~~~~~~~~vi~l~~~~e~~~~R~~~R~ 121 (260)
T 3a4m_A 70 LK-N-YWVIVDDTNYYNSMRRDLIN-IAKKYNKNYAIIYLKASLDVLIRRNIERG 121 (260)
T ss_dssp HT-T-SEEEECSCCCSHHHHHHHHH-HHHHTTCEEEEEEEECCHHHHHHHHHHTT
T ss_pred hh-C-CEEEEeCCcccHHHHHHHHH-HHHHcCCCEEEEEEeCCHHHHHHHHHhCC
Confidence 33 3 78999999999999999999 99888999999999999999999998875
No 5
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.73 E-value=2e-16 Score=107.00 Aligned_cols=125 Identities=15% Similarity=0.212 Sum_probs=78.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+++.+|+|+|+|||||||+++.|++.++.. +++.|.++....... .....+............+.....
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~-----~i~~D~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 71 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLP-----LLSKDAFKEVMFDGL------GWSDREWSRRVGATAIMMLYHTAA 71 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHHH------CCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCe-----EecHHHHHHHHHHhc------CccchHHHHHhhHHHHHHHHHHHH
Confidence 457899999999999999999999998643 556777765543311 111111110011111122222222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.....|..+|+|.++........+.+ +.+..+.+..+|++.||.+++.+|..+|..
T Consensus 72 ~~l~~g~~vi~d~~~~~~~~~~~~~~-l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~ 127 (193)
T 2rhm_A 72 TILQSGQSLIMESNFRVDLDTERMQN-LHTIAPFTPIQIRCVASGDVLVERILSRIA 127 (193)
T ss_dssp HHHHTTCCEEEEECCCHHHHHHHHHH-HHHHSCCEEEEEEEECCHHHHHHHHHHHHH
T ss_pred HHHhCCCeEEEecCCCCHHHHHHHHH-HHHhcCCeEEEEEEeCCHHHHHHHHHHhcC
Confidence 22224668999998844333445655 666667788889999999999999988763
No 6
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=99.71 E-value=3.6e-16 Score=112.82 Aligned_cols=122 Identities=20% Similarity=0.225 Sum_probs=84.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC--CccccCchhhhhHHHHHHHHHH-HHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH--DIFRVDNTEGYNIRQLSAREAQ-EDA 81 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-~~~ 81 (143)
+|.+|+|+|+|||||||+|+.|++.+ .....++.|.++........+. ++. ....... ...+ ..+
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~----~~~~~i~~D~~r~~~~~~~~g~~~~~~----~~~~~~~----~~~~~~~~ 68 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKN----PGFYNINRDDYRQSIMAHEERDEYKYT----KKKEGIV----TGMQFDTA 68 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHS----TTEEEECHHHHHHHHTTSCCCC---CC----HHHHHHH----HHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhC----CCcEEecccHHHHHhccCCcccccccc----hhhhhHH----HHHHHHHH
Confidence 36899999999999999999999864 1235667787766543211111 111 1111111 1112 222
Q ss_pred HHHHh--cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLK--NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~--~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+. ..+..+|+|+++.....|+.|.+ +++..++++.+|++.||.+++.+|+.+|.
T Consensus 69 ~~~l~~~~~g~~vi~d~~~~~~~~~~~l~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 127 (301)
T 1ltq_A 69 KSILYGGDSVKGVIISDTNLNPERRLAWET-FAKEYGWKVEHKVFDVPWTELVKRNSKRG 127 (301)
T ss_dssp HHHTTSCTTCCEEEECSCCCCHHHHHHHHH-HHHHTTCEEEEEECCCCHHHHHHHHHHCG
T ss_pred HHHHhhccCCCEEEEeCCCCCHHHHHHHHH-HHHHcCCcEEEEEEECCHHHHHHHHHhcc
Confidence 33341 45789999999999989999998 88888899889999999999999999886
No 7
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.70 E-value=4.2e-16 Score=104.36 Aligned_cols=128 Identities=15% Similarity=0.127 Sum_probs=75.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc----CCCCccccCc-hhhhhHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY----NSHDIFRVDN-TEGYNIRQLSAREAQ 78 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~ 78 (143)
|++.+|+++|+|||||||+|+.|++.++..+ ..++.|.++....... .+.++..... ......+. .... +
T Consensus 1 m~~~~i~l~G~~GsGKST~a~~La~~l~~~~---~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~ 75 (178)
T 1qhx_A 1 MTTRMIILNGGSSAGKSGIVRCLQSVLPEPW---LAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIGPEFRA-LEGA-W 75 (178)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHSSSCE---EEEEHHHHHHHSCGGGGTSTTSEEECTTSCEEECHHHHH-HHHH-H
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCCe---EEeccchHhhhcchhhccchhhccccCCCccccchhHHH-HHHH-H
Confidence 4678999999999999999999999986432 2345676654422210 0011100000 00111111 1111 1
Q ss_pred HHHHHHHhcCCeEEEEeCCch-hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 79 EDATKWLKNDGEVAIIDGTTA-TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 79 ~~~~~~l~~~~~~vi~d~~~~-~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+..+...|..+|+|+++. ....++.+.+ .++. ..+.+|++.||.+++.+|...|.
T Consensus 76 ~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~-~~~~--~~~~~v~l~~~~e~l~~R~~~r~ 134 (178)
T 1qhx_A 76 AEGVVAMARAGARIIIDDVFLGGAAAQERWRS-FVGD--LDVLWVGVRCDGAVAEGRETARG 134 (178)
T ss_dssp HHHHHHHHHTTCEEEEEECCTTTHHHHHHHHH-HHTT--CCEEEEEEECCHHHHHHHHHHTS
T ss_pred HHHHHHHHhcCCeEEEEeccccChHHHHHHHH-HhcC--CcEEEEEEECCHHHHHHHHHhhC
Confidence 222223333467899999875 4455667777 6643 45667888899999999998775
No 8
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=99.70 E-value=5.7e-17 Score=122.24 Aligned_cols=105 Identities=18% Similarity=0.257 Sum_probs=80.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
...+.+|+|+|+|||||||+|+.|++.+++.+++ .|.+. .+ ..+...+.
T Consensus 255 ~~~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~-----~D~~~-----------~~---------------~~~~~~~~ 303 (416)
T 3zvl_A 255 SPNPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN-----RDTLG-----------SW---------------QRCVSSCQ 303 (416)
T ss_dssp CSSCCEEEEESCTTSSHHHHHHHHTGGGTCEECC-----GGGSC-----------SH---------------HHHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc-----cchHH-----------HH---------------HHHHHHHH
Confidence 3457899999999999999999999887655443 33221 00 01112222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
..+. .+..+|+|+++.....|..+.+ +++++++.+.+|++.+|.+++.+|+.+|..
T Consensus 304 ~~l~-~g~~vIiD~~~~~~~~r~~~~~-~~~~~~~~~~~v~l~~~~e~l~~R~~~R~~ 359 (416)
T 3zvl_A 304 AALR-QGKRVVIDNTNPDVPSRARYIQ-CAKDAGVPCRCFNFCATIEQARHNNRFREM 359 (416)
T ss_dssp HHHH-TTCCEEEESCCCSHHHHHHHHH-HHHHHTCCEEEEEECCCHHHHHHHHHHHHH
T ss_pred HHHh-cCCcEEEeCCCCCHHHHHHHHH-HHHHcCCeEEEEEEeCCHHHHHHHHHhhcc
Confidence 2333 4778999999999999999999 999999999999999999999999999864
No 9
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=99.70 E-value=4.6e-16 Score=110.09 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=83.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhc-CCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELY-NSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
++|.+|+++|+|||||||+|+.|++.++. ....++.|.++....... -..+ +.....+ +...........+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~~---~~~~~~~D~~r~~~~~~~~i~~~-~g~~~~~---~~~~~~~~~~~~~~ 102 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQG---NIVIIDGDSFRSQHPHYLELQQE-YGKDSVE---YTKDFAGKMVESLV 102 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTTT---CCEEECGGGGGTTSTTHHHHHTT-CSSTTHH---HHHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcCC---CcEEEecHHHHHhchhHHHHHHH-cCchHHH---HhhHHHHHHHHHHH
Confidence 45789999999999999999999998752 234556666654321100 0000 1110011 01100112223333
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+...+..+|+|+++.....+..+.+ .+++.++.+.++.+.+|.+++.+|..+|.
T Consensus 103 ~~~~~~g~~vVid~~~~~~~~~~~~~~-~l~~~g~~v~lv~l~~~~e~~~~R~~~R~ 158 (253)
T 2p5t_B 103 TKLSSLGYNLLIEGTLRTVDVPKKTAQ-LLKNKGYEVQLALIATKPELSYLSTLIRY 158 (253)
T ss_dssp HHHHHTTCCEEEECCTTSSHHHHHHHH-HHHHTTCEEEEEEECCCHHHHHHHHHHHH
T ss_pred HHHHhcCCCEEEeCCCCCHHHHHHHHH-HHHHCCCcEEEEEEeCCHHHHHHHHHHHH
Confidence 333334668999999988878888888 88888999988888999999999998874
No 10
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=99.70 E-value=6.7e-17 Score=108.61 Aligned_cols=122 Identities=15% Similarity=0.089 Sum_probs=71.4
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh---hhhhhcCCCCccccCchhhhhHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR---KHLELYNSHDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
+|++.+|+|+|+|||||||+|+.|++.++...+ ...+.... ..+. .+.+.|... + ..... ...
T Consensus 2 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i----~d~~~~g~~i~~~~~--~g~~~~~~~--~--~~~~~----~~~ 67 (183)
T 2vli_A 2 PMRSPIIWINGPFGVGKTHTAHTLHERLPGSFV----FEPEEMGQALRKLTP--GFSGDPQEH--P--MWIPL----MLD 67 (183)
T ss_dssp ---CCEEEEECCC----CHHHHHHHHHSTTCEE----CCTHHHHHHHHHTST--TCCSCGGGS--T--THHHH----HHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhcCCCEE----EchhhhHHHHHHhCc--cccchhhhh--H--HHHHH----HHH
Confidence 567889999999999999999999999875433 12222111 1111 111112111 1 01111 111
Q ss_pred HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+...+...+..+|+|+++...+.++.+.+ .+++.+..+.+|++.||.+++.+|...|.
T Consensus 68 ~i~~~l~~~g~~vi~d~~~~~~~~~~~~~~-~l~~~~~~~~~i~l~~~~e~~~~R~~~R~ 126 (183)
T 2vli_A 68 ALQYASREAAGPLIVPVSISDTARHRRLMS-GLKDRGLSVHHFTLIAPLNVVLERLRRDG 126 (183)
T ss_dssp HHHHHHHHCSSCEEEEECCCCHHHHHHHHH-HHHHTTCCCEEEEEECCHHHHHHHHHTC-
T ss_pred HHHHHHHhCCCcEEEeeeccCHHHHHHHHH-HHHhcCCceEEEEEeCCHHHHHHHHHhcc
Confidence 122233444678889999888877877777 77777777677888999999999988774
No 11
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=99.68 E-value=1.5e-15 Score=102.49 Aligned_cols=123 Identities=21% Similarity=0.235 Sum_probs=85.2
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.+++.+|+++|+|||||||+++.|++.+...+.+..++..|.++..... ...|... +. ...... +....
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~~~----~~~~~~~--~r----~~~~~~-~~~~~ 78 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTVSE----GAGFTRE--ER----LRHLKR-IAWIA 78 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTTTT----TCCCCHH--HH----HHHHHH-HHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHHhh----ccCCChh--hH----HHHHHH-HHHHH
Confidence 4567899999999999999999999999877777777777777543321 1112211 11 101111 11222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
..+...|..+|+|.++.....|+.+.+ ++...+.+..+|++.||.+++.+|...
T Consensus 79 ~~~~~~g~~vi~d~~~~~~~~r~~~~~-~~~~~~~~~~~v~L~~~~e~~~~R~~~ 132 (186)
T 2yvu_A 79 RLLARNGVIVICSFVSPYKQARNMVRR-IVEEEGIPFLEIYVKASLEEVIRRDPK 132 (186)
T ss_dssp HHHHTTTCEEEEECCCCCHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHHCHH
T ss_pred HHHHhCCCEEEEeCccccHHHHHHHHH-HhhccCCCeEEEEEeCCHHHHHHhhhh
Confidence 223345778899998877778888888 888777788889999999999998643
No 12
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=99.67 E-value=6.1e-16 Score=111.43 Aligned_cols=130 Identities=17% Similarity=0.197 Sum_probs=81.3
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.++|.+|+|+|+|||||||+|+.|++.++. ....++.|.++.....-.....-+.....+ .............+
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~~---~~~~Is~D~~R~~~~~~~~~~~~~~~~a~~---~~~~~~~~~~~~~v 103 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQG---NVIVIDNDTFKQQHPNFDELVKLYEKDVVK---HVTPYSNRMTEAII 103 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTTT---CCEEECTHHHHTTSTTHHHHHHHHGGGCHH---HHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEechHhHHhchhhHHHHHHccchhhh---hhhHHHHHHHHHHH
Confidence 456789999999999999999999988731 234567777764321100000001110000 01111111122222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHH----HHHhhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEI----LEHNIKQS 139 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~----~~r~~~r~ 139 (143)
+.+...|..+|+|+++.....+..+.+ .+++.|+.+.++.+.+|.+.+ .+|...|.
T Consensus 104 ~~~l~~g~~vIld~~~~~~~~~~~~~~-~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~ 163 (287)
T 1gvn_B 104 SRLSDQGYNLVIEGTGRTTDVPIQTAT-MLQAKGYETKMYVMAVPKINSYLGTIERYETMY 163 (287)
T ss_dssp HHHHHHTCCEEECCCCCCSHHHHHHHH-HHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCeEEEECCCCCHHHHHHHHH-HHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHH
Confidence 222223778999999998887888888 888889998788889999998 67765553
No 13
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.65 E-value=2.1e-15 Score=101.98 Aligned_cols=128 Identities=13% Similarity=0.137 Sum_probs=75.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-------ccccCchhhhhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-------IFRVDNTEGYNIRQLSARE 76 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~ 76 (143)
|+|.+|+++|+|||||||+|+.|++.++.. .++.|++.+...... +.. ++.........+.......
T Consensus 1 M~~~~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~~~l~~ 74 (196)
T 1tev_A 1 MKPLVVFVLGGPGAGKGTQCARIVEKYGYT-----HLSAGELLRDERKNP-DSQYGELIEKYIKEGKIVPVEITISLLKR 74 (196)
T ss_dssp --CEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHCT-TSTTHHHHHHHHHTTCCCCHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhCCe-----EEeHHHHHHHHHhcc-CChHHHHHHHHHHCCCcCCHHHHHHHHHH
Confidence 568899999999999999999999998653 456666544322110 000 0100000000001111111
Q ss_pred HHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 77 AQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 77 ~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+......+ ..+..+|+|+.+...+.++.|.. .+........+|++.||.+++.+|..+|.
T Consensus 75 ~~~~~~~~~-~~~~~vi~dg~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~R~ 135 (196)
T 1tev_A 75 EMDQTMAAN-AQKNKFLIDGFPRNQDNLQGWNK-TMDGKADVSFVLFFDCNNEICIERCLERG 135 (196)
T ss_dssp HHHHHHHHC-TTCCEEEEESCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHhhhccc-cCCCeEEEeCCCCCHHHHHHHHH-HhcccCCCCEEEEEECCHHHHHHHHHccc
Confidence 122222222 23668999999888887777776 65543233467888999999999998875
No 14
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.63 E-value=8.3e-16 Score=106.54 Aligned_cols=127 Identities=14% Similarity=0.125 Sum_probs=75.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc---cccCchhhhhHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI---FRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
.++++|++.|+|||||||+|+.|++.++..++ +.++..+...... .+. .......+..+...+....+.+
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI-----stGdllR~~i~~~--t~lg~~~~~~~~~G~lVpde~~~~lv~~ 99 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL-----SSGDLLRAEVQSG--SPKGKELKAMMERGELVPLEVVLALLKE 99 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHCCEEE-----CHHHHHHHHHTTC--CHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHCCceE-----cHHHHHHHHHHcC--CchHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 35789999999999999999999999986554 5555555433211 000 0000001111111122222222
Q ss_pred HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
.+.........+|+|+++.+..+.+.|.+ ... -...+|.+.||++++.+|...|..+
T Consensus 100 ~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~-~~~---~~~~vi~l~v~~e~~~~Rl~~R~~~ 156 (217)
T 3umf_A 100 AMIKLVDKNCHFLIDGYPRELDQGIKFEK-EVC---PCLCVINFDVSEEVMRKRLLKRAET 156 (217)
T ss_dssp HHHHHTTTCSEEEEETBCSSHHHHHHHHH-HTC---CCSEEEEEECCHHHHHHHHSCC---
T ss_pred HHhhccccccCcccccCCCcHHHHHHHHH-hCC---ccCEEEeccCCHHHHHHHHhccccc
Confidence 22222234567999999999887776665 332 2335678899999999999888653
No 15
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.63 E-value=5.6e-16 Score=104.66 Aligned_cols=127 Identities=15% Similarity=0.234 Sum_probs=77.1
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHH
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAR 75 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~ 75 (143)
|..+++.+|+|+|+|||||||+|+.|++.++.. .++.|++.+........ .+++...... ......
T Consensus 1 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~~~ 71 (194)
T 1qf9_A 1 MEKSKPNVVFVLGGPGSGKGTQCANIVRDFGWV-----HLSAGDLLRQEQQSGSKDGEMIATMIKNGEIV----PSIVTV 71 (194)
T ss_dssp CCCCCCEEEEEEESTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCTTHHHHHHHHHTTCCC----CHHHHH
T ss_pred CCCCcCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCCCCC----CHHHHH
Confidence 566778899999999999999999999998753 45666544332210000 0001000000 000111
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 76 EAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 76 ~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+...+. ...+..+|+|+.+.....+..|.. .+.....+..+|.+.||.+++.+|...|.
T Consensus 72 ~~l~~~i~--~~~~~~vi~d~~~~~~~~~~~~~~-~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 132 (194)
T 1qf9_A 72 KLLKNAID--ANQGKNFLVDGFPRNEENNNSWEE-NMKDFVDTKFVLFFDCPEEVMTQRLLKRG 132 (194)
T ss_dssp HHHHHHHH--TSTTCCEEEETCCCSHHHHHHHHH-HHTTTCEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHH--hcCCCCEEEeCcCCCHHHHHHHHH-HHhccCCCCEEEEEECCHHHHHHHHHhcc
Confidence 11221111 224678999998888877777776 66532233457888999999999988875
No 16
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.63 E-value=9.1e-15 Score=100.65 Aligned_cols=125 Identities=17% Similarity=0.205 Sum_probs=80.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCc-cccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-FRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
++|+|.|+|||||||+|+.|++.++..++ +.++..+........... .......+..+...+. ..-+.+.+
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~i-----stGdllR~~i~~~t~lg~~~~~~~~~G~lvpd~iv---~~lv~~~l 72 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHI-----STGDILREAVQKGTPLGKKAKEYMERGELVPDDLI---IALIEEVF 72 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEE-----EHHHHHHHHHHHTCHHHHHHHHHHHHTCCCCHHHH---HHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEE-----cHHHHHHHHHHhcChhhhhHHHHHhcCCcCCHHHH---HHHHHHhh
Confidence 47899999999999999999999986554 666655543321100000 0000001111111111 12222333
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhcc
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
.. ...+|+|+++.+..+.+.|.. .+.+.+..+ .++++.||++++++|...|+-+
T Consensus 73 ~~-~~~~ilDGfPRt~~Qa~~l~~-~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~~~ 127 (206)
T 3sr0_A 73 PK-HGNVIFDGFPRTVKQAEALDE-MLEKKGLKVDHVLLFEVPDEVVIERLSGRRIN 127 (206)
T ss_dssp CS-SSCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTEEEC
T ss_pred cc-CCceEecCCchhHHHHHHHHh-hHHHhccccceeeecCCCHHHHHHHHhCCccc
Confidence 33 346999999999999999988 887777655 6788899999999999988643
No 17
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.62 E-value=1.6e-15 Score=103.59 Aligned_cols=114 Identities=12% Similarity=0.118 Sum_probs=72.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhh--hhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHL--ELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+.+|+|+|+|||||||+|+.|++.++...+ +.|.+..... ....+.. +... .. ...+..+.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i-----~~d~~~~~~~~~~~~~g~~-~~~~--~~--------~~~~~~l~~ 81 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFI-----EGDALHPPENIRKMSEGIP-LTDD--DR--------WPWLAAIGE 81 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEE-----EGGGGCCHHHHHHHHHTCC-CCHH--HH--------HHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEE-----eCCcCcchhhHHHHhcCCC-CCch--hh--------HHHHHHHHH
Confidence 568999999999999999999999875544 4444421100 0000111 1110 00 011222222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+ ..+..+|+|+++.....++.+.+ .+ +.++.+|++.||.+++.+|..+|..
T Consensus 82 ~~-~~~~~vivd~~~~~~~~~~~l~~-~~---~~~~~vi~l~~~~e~~~~Rl~~R~~ 133 (202)
T 3t61_A 82 RL-ASREPVVVSCSALKRSYRDKLRE-SA---PGGLAFVFLHGSESVLAERMHHRTG 133 (202)
T ss_dssp HH-TSSSCCEEECCCCSHHHHHHHHH-TS---TTCCEEEEEECCHHHHHHHHHHHHS
T ss_pred HH-hcCCCEEEECCCCCHHHHHHHHH-hc---CCCeEEEEEeCCHHHHHHHHHHhhc
Confidence 22 34678999999988887777766 43 4456678889999999999988853
No 18
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.57 E-value=3e-15 Score=102.20 Aligned_cols=126 Identities=21% Similarity=0.246 Sum_probs=75.0
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREA 77 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~ 77 (143)
+.++++|+|+|+|||||||+|+.|++.++.. .++.|++.+....... ..+++.. +. ..........
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~-----~i~~d~~~r~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~ 87 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIP-----QISTGELFRRNIEEGTKLGVEAKRYLDA-GD---LVPSDLTNEL 87 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHH-TC---CCCHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCc-----EEehhHHHHHHHHcCChHHHHHHHHHHc-CC---cccHHHHHHH
Confidence 4567899999999999999999999998754 4566665443211000 0000100 00 0000000111
Q ss_pred HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713 78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+.+.+.... .+..+|+|+.+.....++.+.. ++.+.+. +..+|++.||.+++.+|...|.
T Consensus 88 ~~~~~~~~~-~~~~vIldg~~~~~~~~~~l~~-~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~ 148 (201)
T 2cdn_A 88 VDDRLNNPD-AANGFILDGYPRSVEQAKALHE-MLERRGTDIDAVLEFRVSEEVLLERLKGRG 148 (201)
T ss_dssp HHHHTTSGG-GTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHHHC
T ss_pred HHHHHhccc-CCCeEEEECCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 111111112 2446899998777777777777 7766554 3367888999999999988774
No 19
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=99.57 E-value=3.8e-14 Score=111.12 Aligned_cols=121 Identities=17% Similarity=0.198 Sum_probs=81.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+++.+|+|+|+|||||||+|+.|+++|...++....+..|.++..... ...|... + +...... +.++..
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~L~~----~~~fs~~--d----ree~~r~-i~eva~ 118 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK----NLGFSPE--D----REENVRR-IAEVAK 118 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTTTTT----TCCSSHH--H----HHHHHHH-HHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhccCc----cccCChh--h----hHHHHHH-HHHHHH
Confidence 478899999999999999999999998555555445555555433211 1123211 1 1111111 222333
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.+...|.++|.|+.......|+.+.+ +++..+.++++|++.||.+++.+|..
T Consensus 119 ~~l~~G~iVI~d~~s~~~~~r~~~r~-ll~~~g~p~~vV~Ldap~Evl~~Rl~ 170 (630)
T 1x6v_B 119 LFADAGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDV 170 (630)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHH-HHHTTTCCEEEEEEECCHHHHHHHCT
T ss_pred HHHhCCCEEEEeCchhhHHHHHHHHH-HHHhCCCCeEEEEEECCHHHHHHHhc
Confidence 33345788888876666667888888 88877888889999999999999975
No 20
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=99.57 E-value=7.3e-14 Score=96.11 Aligned_cols=120 Identities=19% Similarity=0.161 Sum_probs=76.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.++.+|+++|+|||||||+++.|++.++ ..|++...++.|.++..... ...++. .+ +..........+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~l~~---~~~~~~---~~----r~~~~~~~~~~~~ 92 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGLNK---DLGFSE---AD----RNENIRRIAEVAK 92 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTTTTT---TCCSSH---HH----HHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhhhcc---ccCCCH---HH----HHHHHHHHHHHHH
Confidence 4568999999999999999999999987 55655666666666533211 111111 11 1111111111122
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHh------hcCCEEEEEEeecCcHHHHHHh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFAR------KMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~------~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
..+. .|..||+|........++.+.+ ++. ..+.+..+|++.||.+++.+|.
T Consensus 93 ~~l~-~g~~VI~d~~~~~~~~~~~l~~-l~~~~~~~~~~~~p~~vi~Ld~~~e~~~~R~ 149 (211)
T 1m7g_A 93 LFAD-SNSIAITSFISPYRKDRDTARQ-LHEVATPGEETGLPFVEVYVDVPVEVAEQRD 149 (211)
T ss_dssp HHHH-TTCEEEEECCCCCHHHHHHHHH-HHHCCCTTCSCCCCEEEEEEECCHHHHHTSC
T ss_pred HHHH-CCCEEEEecCCccHHHHHHHHH-HhhhcccccccCCCeEEEEEeCCHHHHHHhh
Confidence 2233 4778999976555567777777 776 3456788899999999999984
No 21
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.56 E-value=2.9e-14 Score=95.18 Aligned_cols=118 Identities=14% Similarity=0.150 Sum_probs=68.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh-hhh-cCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH-LEL-YNSHDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
++..+|+++|+|||||||+++.|+..++.. .++.|++.... ... ..+.. +.. ....... ..++.+
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~g~~-----~i~~d~~~~~~~~~~~~~g~~-~~~--~~~~~~~-----~~~~~~ 72 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQLHAA-----FLDGDFLHPRRNIEKMASGEP-LND--DDRKPWL-----QALNDA 72 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHTCE-----EEEGGGGCCHHHHHHHHTTCC-CCH--HHHHHHH-----HHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhhCcE-----EEeCccccchHHHHHhhcCcC-CCc--cccccHH-----HHHHHH
Confidence 456799999999999999999999988654 34445442210 000 01111 110 1111000 112222
Q ss_pred HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+...+..+|+|+++..++.++.+ ++.+.++.+|++.||.+++.+|..+|.
T Consensus 73 ~~~~~~~~~~~vi~~~~~~~~~~~~l-----~~~~~~~~vv~l~~~~e~~~~R~~~R~ 125 (175)
T 1knq_A 73 AFAMQRTNKVSLIVCSALKKHYRDLL-----REGNPNLSFIYLKGDFDVIESRLKARK 125 (175)
T ss_dssp HHHHHHHCSEEEEECCCCSHHHHHHH-----HTTCTTEEEEEEECCHHHHHHHHHTST
T ss_pred HHHHHhcCCcEEEEeCchHHHHHHHH-----HhcCCCEEEEEEECCHHHHHHHHHhcc
Confidence 22222235688999887766554443 334445667888999999999998875
No 22
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.55 E-value=8.7e-14 Score=92.24 Aligned_cols=121 Identities=15% Similarity=0.164 Sum_probs=71.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHH-HHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQ-EDATKWL 85 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l 85 (143)
++|+++|+|||||||+|+.| +.++.. .++.|++.+...... +.+.. ........++.......+ ..+...+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~-----~i~~~~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l 73 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAK-----VIVMSDVVRKRYSIE-AKPGE-RLMDFAKRLREIYGDGVVARLCVEEL 73 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCE-----EEEHHHHHHHHHHHH-C---C-CHHHHHHHHHHHHCTTHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCc-----EEEHhHHHHHHHHhc-CCChh-HHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 58999999999999999999 776543 556666555433221 10000 000000001110000111 1122333
Q ss_pred -hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 86 -KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 86 -~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
...+..+|+|+. .....++.+.+ .+. .+..+|++.+|.+++.+|...|..
T Consensus 74 ~~~~~~~vi~dg~-~~~~~~~~l~~-~~~---~~~~~i~l~~~~~~~~~R~~~R~~ 124 (179)
T 3lw7_A 74 GTSNHDLVVFDGV-RSLAEVEEFKR-LLG---DSVYIVAVHSPPKIRYKRMIERLR 124 (179)
T ss_dssp CSCCCSCEEEECC-CCHHHHHHHHH-HHC---SCEEEEEEECCHHHHHHHHHTCC-
T ss_pred HhcCCCeEEEeCC-CCHHHHHHHHH-HhC---CCcEEEEEECCHHHHHHHHHhccC
Confidence 245778999998 77777777776 553 556778889999999999988753
No 23
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=99.55 E-value=6.6e-14 Score=109.19 Aligned_cols=122 Identities=16% Similarity=0.144 Sum_probs=84.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
.+++.+|+|+|+|||||||+|+.|++.|+..| .....+..|.++..... ...|+.. +. ... ...+..+
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l~~----~~~f~~~--er----~~~-i~ri~~v 461 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSS----ELGFTRE--DR----HTN-IQRIAFV 461 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHTCT----TCCCSHH--HH----HHH-HHHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHhcc----ccCCChh--HH----HHH-HHHHHHH
Confidence 34578999999999999999999999998655 66667777877664211 1123211 11 111 1112334
Q ss_pred HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
...+...|..||.|..+..+..|+.+.+ ++++.+ .++.|++.||.+++.+|+.+
T Consensus 462 ~~~~~~~g~~VI~~~is~~~~~R~~~r~-l~~~~g-~~~~V~Lda~~ev~~~R~~r 515 (573)
T 1m8p_A 462 ATELTRAGAAVIAAPIAPYEESRKFARD-AVSQAG-SFFLVHVATPLEHCEQSDKR 515 (573)
T ss_dssp HHHHHHTTCEEEEECCCCCHHHHHHHHH-HHHTTS-EEEEEEECCCHHHHHHHCSS
T ss_pred HHHHHhCCCEEEEEcCCCcHHHHHHHHH-HHHhcC-CeEEEEEeCCHHHHHHHhcc
Confidence 4444445788999988888888888888 877644 57788999999999999643
No 24
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=99.54 E-value=1.4e-13 Score=93.95 Aligned_cols=118 Identities=14% Similarity=0.109 Sum_probs=78.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
.++.+|+++|+|||||||+++.|+..+...|.-...+..|+++..... ... +.. .+..... ..+..+..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~~~~---~~~-~~~--~~~~~~~-----~~~~~~~~ 91 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHGLNR---DLS-FKA--EDRAENI-----RRVGEVAK 91 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---TCC-SSH--HHHHHHH-----HHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhHhhc---ccC-cCh--HHHHHHH-----HHHHHHHH
Confidence 456899999999999999999999998654543335666666543211 111 211 1111111 11223333
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
.+...+..+|.++.+..++.|+.+.+ ++. +..+..|++.+|.+++.+|.
T Consensus 92 ~~~~~~~~vi~~~~~~~~~~r~~~~~-~~~--~~~~~~v~L~a~~e~~~~R~ 140 (200)
T 3uie_A 92 LFADAGIICIASLISPYRTDRDACRS-LLP--EGDFVEVFMDVPLSVCEARD 140 (200)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHH-TSC--TTSEEEEEECCCHHHHHHHC
T ss_pred HHHhCCceEEEecCCchHHHHHHHHH-hcC--CCCEEEEEEeCCHHHHHHhc
Confidence 34445788999999888888888887 665 34567788999999999997
No 25
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.54 E-value=2.7e-14 Score=97.52 Aligned_cols=118 Identities=15% Similarity=0.092 Sum_probs=69.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh--hcCCCCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE--LYNSHDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
++.+|+|+|+|||||||+++.|+..++... ++.|.+...... ...+.. +.. .... .. ...++...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~-----i~~d~~~~~~~~~~~~~g~~-~~~--~~~~--~~---~~~~~~~~ 94 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIAHGVADETGLEF-----AEADAFHSPENIATMQRGIP-LTD--EDRW--PW---LRSLAEWM 94 (200)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHCCEE-----EEGGGGSCHHHHHHHHTTCC-CCH--HHHH--HH---HHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCeE-----EcccccccHHHHHHHhcCCC-CCC--cccc--cH---HHHHHHHH
Confidence 457999999999999999999999886543 444443221000 000111 111 1100 00 01122222
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
......+..+|+|+.+..++.++.+.+ . ..++.+|++.||.+++.+|..+|..
T Consensus 95 ~~~~~~g~~viid~~~~~~~~~~~l~~-~----~~~~~vv~l~~~~e~l~~Rl~~R~~ 147 (200)
T 4eun_A 95 DARADAGVSTIITCSALKRTYRDVLRE-G----PPSVDFLHLDGPAEVIKGRMSKREG 147 (200)
T ss_dssp HHHHHTTCCEEEEECCCCHHHHHHHTT-S----SSCCEEEEEECCHHHHHHHHTTCSC
T ss_pred HHHHhcCCCEEEEchhhhHHHHHHHHH-h----CCceEEEEEeCCHHHHHHHHHhccc
Confidence 222234667889998887766655544 3 2345678889999999999987753
No 26
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.53 E-value=1.3e-14 Score=98.30 Aligned_cols=122 Identities=16% Similarity=0.206 Sum_probs=70.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
++.+|+++|+|||||||+|+.|++.++.. .++.|++.+....... + .+++. .+.. .........+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~-~g~~---~~~~~~~~~~~ 78 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYT-----HLSTGDLLRSEVSSGSARGKKLSEIME-KGQL---VPLETVLDMLR 78 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHHHTTCHHHHHHHHHHH-TTCC---CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCe-----EEcHHHHHHHHHHcCChHHHHHHHHHH-cCCc---CCHHHHHHHHH
Confidence 46799999999999999999999998754 4455554333211000 0 00010 0000 00001111222
Q ss_pred HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+......+..+|+|+.+...+.++.|.. .+ ..+..+|++.||.+++.+|...|.
T Consensus 79 ~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~-~~---~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 79 DAMVAKVNTSKGFLIDGYPREVQQGEEFER-RI---GQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp HHHHHHTTTCSCEEEESCCCSHHHHHHHHH-HT---CCCSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHhccccCCcEEEeCCCCCHHHHHHHHH-hc---CCCCEEEEEECCHHHHHHHHHccC
Confidence 222222224678999997776666655555 44 223356778899999999988775
No 27
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.53 E-value=4.6e-14 Score=95.77 Aligned_cols=123 Identities=16% Similarity=0.159 Sum_probs=71.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
++.+|+++|+|||||||+|+.|+++++. ..++.|++.+....... -.+++.. +.. .........+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~-----~~i~~d~~~~~~~~~~~~~~~~i~~~~~~-g~~---~~~~~~~~~~~ 81 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGF-----THLSTGELLREELASESERSKLIRDIMER-GDL---VPSGIVLELLK 81 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHHHTCHHHHHHHHHHHT-TCC---CCHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCC-----eEEcHHHHHHHHHHhCCHHHHHHHHHHHc-CCc---CCHHHHHHHHH
Confidence 3579999999999999999999999874 34566665433221000 0011110 000 00011111122
Q ss_pred HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
..+......+..+|+|+.+...+.+..|.+ .+ +.+..+|++.||.+++.+|..+|..
T Consensus 82 ~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~-~~---~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 82 EAMVASLGDTRGFLIDGYPREVKQGEEFGR-RI---GDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp HHHHHHTTSCSCEEEETCCSSHHHHHHHHH-HT---CCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred HHHhcccccCccEEEeCCCCCHHHHHHHHH-hc---CCCCEEEEEECCHHHHHHHHHcCCC
Confidence 222222224678999998887777666655 32 2233567888999999999887753
No 28
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.52 E-value=2.9e-14 Score=98.22 Aligned_cols=120 Identities=14% Similarity=0.204 Sum_probs=74.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.|+|+|+|||||||+|+.|++.++.. .++.|++.+........ ..++... ...........+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~~~l 72 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP-----HISTGDMFRAAIKNGTELGLKAKSFMDQG----NLVPDEVTIGIVHERL 72 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHHHT----CCCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EeeHHHHHHHHHhcCCHHHHHHHHHHHCC----CCCCHHHHHHHHHHHH
Confidence 58899999999999999999998654 45666654443221100 0000000 0000001111111111
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r 138 (143)
.. ...+..+|+|+.+........+.+ .+...+... .+|.+.+|.+++.+|..+|
T Consensus 73 ~~-~~~~~~~ildg~p~~~~~~~~l~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3fb4_A 73 SK-DDCQKGFLLDGFPRTVAQADALDS-LLTDLGKKLDYVLNIKVEQEELMKRLTGR 127 (216)
T ss_dssp TS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCHHHHHHHHHSE
T ss_pred hc-ccCCCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcC
Confidence 11 123567999998888888888887 777666544 6788899999999999888
No 29
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.52 E-value=1.2e-13 Score=92.86 Aligned_cols=120 Identities=19% Similarity=0.224 Sum_probs=71.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQ 78 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
+++.+|+++|+|||||||+|+.|++.++.. .++.|++.+....... ..+++...... .... ..
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~~~-----~i~~d~~~~~~~~~~~~~~~~i~~~~~~g~~~----~~~~---~~ 69 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELGFK-----KLSTGDILRDHVARGTPLGERVRPIMERGDLV----PDDL---IL 69 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHTCE-----EECHHHHHHHHHHTTCHHHHHHHHHHHTTCCC----CHHH---HH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCe-----EecHHHHHHHHHHcCChHHHHHHHHHHcCCcC----CHHH---HH
Confidence 346799999999999999999999988754 3455544332211000 00011100000 0000 01
Q ss_pred HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713 79 EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 79 ~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+...+.. .+|+|+......++..+.. ++.+.+. +..+|++.||.+++.+|...|.
T Consensus 70 ~~~~~~l~~---~~i~dg~~~~~~~~~~l~~-~l~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 127 (186)
T 3cm0_A 70 ELIREELAE---RVIFDGFPRTLAQAEALDR-LLSETGTRLLGVVLVEVPEEELVRRILRRA 127 (186)
T ss_dssp HHHHHHCCS---EEEEESCCCSHHHHHHHHH-HHHHTTEEEEEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHhcC---CEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 111122222 3899998877776766666 7766664 3467888999999999988774
No 30
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.52 E-value=2.2e-14 Score=98.83 Aligned_cols=120 Identities=13% Similarity=0.196 Sum_probs=74.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCC-----CCccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNS-----HDIFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.|+|+|+|||||||+|+.|++.++.. .++.|++.+........ .+++.... ..........+...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~-----~i~~d~~~r~~~~~~~~~~~~~~~~~~~g~----~~~~~~~~~~~~~~l 72 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP-----HISTGDMFRAAMKEETPLGLEAKSYIDKGE----LVPDEVTIGIVKERL 72 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC-----EEEHHHHHHHHHHTTCHHHHHHHHHHTTTC----CCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc-----EEeHHHHHHHHHhcCCHHHHHHHHHHHCCC----CCCHHHHHHHHHHHH
Confidence 58899999999999999999987643 55676655543221100 00011000 000001111111111
Q ss_pred HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhh
Q psy2713 83 KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 83 ~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r 138 (143)
.. ...+..+|+|+.+........+.+ .+...+... .++.+.+|.+++.+|..+|
T Consensus 73 ~~-~~~~~~~ildg~p~~~~~~~~~~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R 127 (216)
T 3dl0_A 73 GK-DDCERGFLLDGFPRTVAQAEALEE-ILEEMGKPIDYVINIQVDKDVLMERLTGR 127 (216)
T ss_dssp TS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCSEEEEEECCGGGHHHHHHTE
T ss_pred hc-ccccCCEEEeCCCCCHHHHHHHHH-HHHHcCCCCCEEEEEECCHHHHHHHHHCC
Confidence 11 123667999998888888888887 777666544 6788899999999999988
No 31
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.51 E-value=7.8e-14 Score=96.46 Aligned_cols=124 Identities=16% Similarity=0.193 Sum_probs=72.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
+.+|+|+|+|||||||+|+.|++.++. ..++.|++.+....... ..+++..... .........+..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~~~~~~~~~~~~~g~~i~~~~~~g~~----~~~~~~~~~l~~ 74 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHA-----AHLATGDMLRSQIAKGTQLGLEAKKIMDQGGL----VSDDIMVNMIKD 74 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTTCHHHHHHHHHHHTTCC----CCHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEehhHHHHHHHHcCChHHHHHHHHHHCCCc----CCHHHHHHHHHH
Confidence 568999999999999999999999875 35566665443211000 0001110000 000011111222
Q ss_pred HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhh
Q psy2713 81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+......+..+|+|+......+++.+.. ++.+.+... .+|++.+|.+++.+|...|.
T Consensus 75 ~l~~~~~~~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~R~~~r~ 133 (220)
T 1aky_A 75 ELTNNPACKNGFILDGFPRTIPQAEKLDQ-MLKEQGTPLEKAIELKVDDELLVARITGRL 133 (220)
T ss_dssp HHHHCGGGGSCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHhccccCCCeEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHhCCC
Confidence 22111112456899987666666666666 666555443 67888999999999988775
No 32
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.51 E-value=4.1e-14 Score=99.55 Aligned_cols=124 Identities=15% Similarity=0.137 Sum_probs=77.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQ 78 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (143)
.+|.+|+|+|+|||||||+|+.|++.++.. .++.|+..+....... + ..++... ..+........
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~-----~is~~~~~r~~~~~~~~~g~~i~~~~~~g----~~~~~~~~~~~- 96 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYC-----HLSTGDLLREAAEKKTELGLKIKNIINEG----KLVDDQMVLSL- 96 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTTSSSHHHHHHHHHHHTT----CCCCHHHHHHH-
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCe-----EEecHHHHHHHHhccchHHHHHHHHHhcC----CCCcHHHHHHH-
Confidence 357899999999999999999999998643 4566665444221100 0 0000000 00000111111
Q ss_pred HHHHHHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEE-EEEEeecCcHHHHHHhhhhhc
Q psy2713 79 EDATKWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKV-LFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 79 ~~~~~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+...+ ...+..+|+|+......+...+.+ ++...+... .++.+.+|.+++++|...|..
T Consensus 97 --~~~~l~~~~~~~~~ildg~p~~~~q~~~l~~-~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~~ 158 (243)
T 3tlx_A 97 --VDEKLKTPQCKKGFILDGYPRNVKQAEDLNK-LLQKNQTKLDGVFYFNVPDEVLVNRISGRLI 158 (243)
T ss_dssp --HHHHTTSGGGSSEEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTEEE
T ss_pred --HHHHHhcccccCCEEecCCCCcHHHHHHHHH-HHHHcCCCCceEEEEeCCHHHHHHHHHcCCC
Confidence 12222 123668999998888888888877 776655433 677889999999999998864
No 33
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=99.48 E-value=1.2e-12 Score=87.60 Aligned_cols=122 Identities=18% Similarity=0.220 Sum_probs=71.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
++..+|+++|++||||||+++.|+..+...+++...+..+.++..... ... +.....+. .++ . +.....
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~~~~~---~~~-~~~~~~~~-~~~-----~-~~~~~~ 71 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNK---NLG-FSPEDREE-NVR-----R-IAEVAK 71 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTTTTT---TCC-SSHHHHHH-HHH-----H-HHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHHHHhh---ccc-cccccHHH-HHH-----H-HHHHHH
Confidence 456799999999999999999999988444544444455554432111 011 11100111 111 1 111112
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.+.+.+..++.+........+..+.+ +++..+.+..+|++.||.+++.+|..+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~l~~~~e~~~~R~~~ 124 (179)
T 2pez_A 72 LFADAGLVCITSFISPYTQDRNNARQ-IHEGASLPFFEVFVDAPLHVCEQRDVK 124 (179)
T ss_dssp HHHHTTCEEEEECCCCCHHHHHHHHH-HHHHTTCCEEEEEEECCHHHHHHHCTT
T ss_pred HHHHCCCEEEEecCCcchHHHHHHHH-HhhccCCCeEEEEEeCCHHHHHHHHhh
Confidence 23234655555655444445566666 666667777889999999999999654
No 34
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.47 E-value=2.4e-13 Score=92.76 Aligned_cols=123 Identities=15% Similarity=0.154 Sum_probs=71.1
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCC-------ccccCchhhhhHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD-------IFRVDNTEGYNIRQLSAR 75 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~ 75 (143)
+.++.+|+|+|+|||||||+|+.|++.++. ..++.|++.+...... +.. ++. .+. ........
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~-----~~i~~d~~~~~~~~~~-~~~~~~~i~~~~~-~g~---~~~~~~~~ 81 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSF-----VHLSAGDLLRAEQGRA-GSQYGELIKNCIK-EGQ---IVPQEITL 81 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSC-----EEEEHHHHHHHHHHST-TCSCHHHHHHHHH-TTC---CCCHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCc-----eEEeHHHHHHHHHhcc-CCHHHHHHHHHHH-cCC---cCCHHHHH
Confidence 345679999999999999999999998764 4556666544321100 100 010 000 00001111
Q ss_pred HHHHHHH-HHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 76 EAQEDAT-KWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 76 ~~~~~~~-~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+...+ ..+..++..+|+|+.+...+....+.. .+. . ...+|++.||.+++.+|..+|.
T Consensus 82 ~~l~~~i~~~l~~g~~~~i~dg~~~~~~~~~~~~~-~~~--~-~~~~i~l~~~~e~~~~Rl~~R~ 142 (203)
T 1ukz_A 82 ALLRNAISDNVKANKHKFLIDGFPRKMDQAISFER-DIV--E-SKFILFFDCPEDIMLERLLERG 142 (203)
T ss_dssp HHHHHHHHHHHHTTCCEEEEETCCCSHHHHHHHHH-HTC--C-CSEEEEEECCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhccCCCeEEEeCCCCCHHHHHHHHH-hcC--C-CCEEEEEECCHHHHHHHHHhcc
Confidence 1222222 233444468899998776665555444 332 1 2356778899999999988774
No 35
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.47 E-value=2.4e-13 Score=93.96 Aligned_cols=123 Identities=13% Similarity=0.117 Sum_probs=73.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCC-----CccccCchhhhhHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSH-----DIFRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
.+.|+|+|+|||||||+|+.|++.++. ..++.|++.+......... +++.. + ...........+..
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~li~~~~~~~t~~g~~i~~~~~~-g---~~~~~~~~~~~i~~ 75 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGL-----AHLSTGDMLREAIKNGTKIGLEAKSIIES-G---NFVGDEIVLGLVKE 75 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHTC--CCHHHHHHHHH-T---CCCCHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCc-----eEEehhHHHHHHHHcCCHHHHHHHHHHHC-C---CcCCHHHHHHHHHH
Confidence 468999999999999999999999864 3456666554432211000 00100 0 00000111111222
Q ss_pred HHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713 81 ATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+... ..+..+|+|+...+..+.+.+.+ ++...+. +..+|++.||.+++.+|...|.
T Consensus 76 ~l~~~-~~~~~~i~dg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 133 (217)
T 3be4_A 76 KFDLG-VCVNGFVLDGFPRTIPQAEGLAK-ILSEIGDSLTSVIYFEIDDSEIIERISGRC 133 (217)
T ss_dssp HHHTT-TTTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHhcc-ccCCCEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 11111 23567899988777666666666 6655553 3467888999999999988775
No 36
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.45 E-value=4.7e-12 Score=86.46 Aligned_cols=131 Identities=13% Similarity=0.097 Sum_probs=67.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe--hhhhhhhhhhhcCCCCccccCchhhhhHH-HHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS--VSAYRRKHLELYNSHDIFRVDNTEGYNIR-QLSAREAQED 80 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 80 (143)
|++.+|+|+|+|||||||+|+.|++.++..+ +..... .+...+..+........++ .....+. .......+..
T Consensus 2 m~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g-~~~~~~~~~~~~i~~~~~~~~~~~~~~---~~~~~~~~~~~r~~~~~~ 77 (213)
T 2plr_A 2 KKGVLIAFEGIDGSGKSSQATLLKDWIELKR-DVYLTEWNSSDWIHDIIKEAKKKDLLT---PLTFSLIHATDFSDRYER 77 (213)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTTS-CEEEEETTCCCHHHHHHHHHTTTSCCC---HHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhhcC-CEEEecCCcHHHHHHHHhccccccCCC---HHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999998765 322111 1111112121110000011 1100000 0000011111
Q ss_pred HHHHHhcCCeEEEEeCCchhHHHH--------HHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh-hhh
Q psy2713 81 ATKWLKNDGEVAIIDGTTATMEKR--------KQIHDYFARKMGFKVLFVELIVQDEEILEHNI-KQS 139 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~~~~r--------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~-~r~ 139 (143)
.+......+..+|+|......... +.+.. +.+....+.++|++.+|.+++.+|.. +|.
T Consensus 78 ~i~~~l~~g~~vi~D~~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~vi~l~~~~e~~~~Rl~~~R~ 144 (213)
T 2plr_A 78 YILPMLKSGFIVISDRYIYTAYARDSVRGVDIDWVKK-LYSFAIKPDITFYIRVSPDIALERIKKSKR 144 (213)
T ss_dssp THHHHHHTTCEEEEESCHHHHHHHHHTTTCCHHHHHH-HTTTSCCCSEEEEEECCHHHHHHHHHHTTC
T ss_pred HHHHHHhCCCEEEEeCcHhHHHHHHHhhCCCHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHhcccc
Confidence 112222347789999876543221 22333 33322334457888899999999988 664
No 37
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=99.42 E-value=9.1e-13 Score=102.30 Aligned_cols=118 Identities=18% Similarity=0.147 Sum_probs=81.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+++|+|||||||+|+.|++.++..+.+..++..|.++..... ...|... +... .... +......
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~----~~~f~~~--er~~----~l~~-i~~~~~~ 439 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSR----GLGFSKE--DRIT----NILR-VGFVASE 439 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCT----TCCSSHH--HHHH----HHHH-HHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhcc----cccccHH--HHHH----HHHH-HHHHHHH
Confidence 46899999999999999999999999887877778888877655321 1123211 1111 1111 2222233
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
+...|..+|+|+++..+..|+.+.+ ++++ ..+.+|++.||.+++.+|..
T Consensus 440 ~l~~G~~VI~d~~~~~~~~r~~~~~-~l~~--~d~~vV~L~~~~e~~~~Rl~ 488 (546)
T 2gks_A 440 IVKHNGVVICALVSPYRSARNQVRN-MMEE--GKFIEVFVDAPVEVCEERDV 488 (546)
T ss_dssp HHHTTCEEEEECCCCCHHHHHHHHT-TSCT--TCEEEEEEECCGGGHHHHCC
T ss_pred HHhCCCEEEEEcCCCCHHHHHHHHH-Hhhc--CCEEEEEEeCCHHHHHHHhh
Confidence 3335779999998888888887777 6654 24567888899999999975
No 38
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=99.42 E-value=2.2e-12 Score=89.50 Aligned_cols=120 Identities=9% Similarity=0.128 Sum_probs=70.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--C---CCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--S---HDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
++|+|.|+|||||||+|+.|++.++. ..++.|++.+....... + .+++.. +. ..........+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~-----~~i~~dd~~r~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~i~-- 69 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSL-----AHIESGGIFREHIGGGTELGKKAKEFIDR-GD---LVPDDITIPMVL-- 69 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-----EEEEHHHHHHHHTTTTCHHHHHHHHHHTT-TC---CCCHHHHHHHHH--
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCC-----eEEchHHHHHHHHHcCCHHHHHHHHHHHc-CC---cCcHHHHHHHHH--
Confidence 37999999999999999999999864 45677665444211000 0 000100 00 000011111121
Q ss_pred HHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713 82 TKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 82 ~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+.. .+..+|+|+..........+.+ .+...+. +..++.+.+|.+++.+|...|.
T Consensus 70 -~~l~~~~g~~vIlDg~~~~~~~~~~l~~-~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R~ 127 (223)
T 2xb4_A 70 -ETLESKGKDGWLLDGFPRNTVQAQKLFE-ALQEKGMKINFVIEILLPREVAKNRIMGRR 127 (223)
T ss_dssp -HHHHHHCTTCEEEESCCCSHHHHHHHHH-HHHHTTCCCCEEEEEECCHHHHHHHHHTBC
T ss_pred -HHHhcccCCeEEEeCCcCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHccc
Confidence 22211 1568999987766655666665 5544443 3367888999999999998875
No 39
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.40 E-value=1.2e-12 Score=88.16 Aligned_cols=45 Identities=20% Similarity=0.195 Sum_probs=36.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
|++.+|+|+|+|||||||+++.|++.++..+++...++.|++.+.
T Consensus 1 M~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~ 45 (192)
T 1kht_A 1 MKNKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFE 45 (192)
T ss_dssp --CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHH
Confidence 356799999999999999999999999877766677887776544
No 40
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.39 E-value=5.2e-12 Score=86.52 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+++.+|+|+|+|||||||+++.|++.++..+++++.+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v~~~~ 44 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELLR 44 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEee
Confidence 34789999999999999999999999988888876664
No 41
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.38 E-value=5.8e-12 Score=84.76 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=34.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++|+|+|+|||||||+|+.|+++++..++....+..|++..
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 58999999999999999999999987777777777666543
No 42
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=99.37 E-value=6.7e-13 Score=92.62 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=70.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
.+..|+|.|+|||||||+|+.|+++++. ..++.|++.+....... ..+++.... ..........+.
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~-----~~i~~d~li~~~~~~~~~~g~~i~~~~~~g~----~~~~~~~~~~i~ 85 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCV-----CHLATGDMLRAMVASGSELGKKLKATMDAGK----LVSDEMVLELIE 85 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTC-----EEEEHHHHHHHHHHHTCHHHHHHHHHHHTTC----CCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC-----ceecHHHHHHHHHHcCChhHHHHHHHHHCCC----cCCHHHHHHHHH
Confidence 3468999999999999999999999874 34566655443211100 000010000 000011111121
Q ss_pred HHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcC-CEEEEEEeecCcHHHHHHhhhhh
Q psy2713 80 DATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMG-FKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 80 ~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+.. ...+..+|+|.......+.+.+.+ .+...+ .+..+|++.+|.+++.+|...|.
T Consensus 86 ~~l~~-~~~~~g~ildg~~~~~~~~~~l~~-~l~~~~~~~d~vi~L~~~~e~~~~Rl~~R~ 144 (233)
T 1ak2_A 86 KNLET-PPCKNGFLLDGFPRTVRQAEMLDD-LMEKRKEKLDSVIEFSIPDSLLIRRITGRL 144 (233)
T ss_dssp HHHTS-GGGTTCEEEESCCCSHHHHHHHHH-HHHHHTCCCCEEEEEECCHHHHHHHHHTCE
T ss_pred HHHhc-ccccCcEEEeCCCCCHHHHHHHHH-HHHhcCCCCCEEEEEECCHHHHHHHHHcCC
Confidence 11111 112345889987666666666666 655433 34467888999999999988774
No 43
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.36 E-value=5e-12 Score=86.48 Aligned_cols=37 Identities=22% Similarity=0.291 Sum_probs=33.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
++.+|+|+|+|||||||+++.|++.++..+++++.+.
T Consensus 9 ~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~~~~~ 45 (212)
T 2wwf_A 9 KGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHLY 45 (212)
T ss_dssp CSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 4689999999999999999999999998888887664
No 44
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.35 E-value=1.4e-12 Score=88.85 Aligned_cols=112 Identities=16% Similarity=0.146 Sum_probs=61.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
..+|+++|+|||||||+++.|++.++.. .++.|++.....+.. ..++|...+.. .. ...-..++..+
T Consensus 25 ~~~i~l~G~~GsGKsTl~~~La~~l~~~-----~i~~d~~~~~~~g~~-i~~~~~~~~~~---~~----~~~e~~~l~~l 91 (199)
T 3vaa_A 25 MVRIFLTGYMGAGKTTLGKAFARKLNVP-----FIDLDWYIEERFHKT-VGELFTERGEA---GF----RELERNMLHEV 91 (199)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSC-HHHHHHHHHHH---HH----HHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcchHHHHHHhCCc-HHHHHHhcChH---HH----HHHHHHHHHHH
Confidence 4689999999999999999999998754 456666544422100 01112111110 01 11112223333
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.. ...+|+++.......++.+. .+.+ ...+|++.||.+++.+|..
T Consensus 92 ~~-~~~~vi~~ggg~~~~~~~~~--~l~~---~~~vi~L~~~~e~l~~Rl~ 136 (199)
T 3vaa_A 92 AE-FENVVISTGGGAPCFYDNME--FMNR---TGKTVFLNVHPDVLFRRLR 136 (199)
T ss_dssp TT-CSSEEEECCTTGGGSTTHHH--HHHH---HSEEEEEECCHHHHHHHHH
T ss_pred hh-cCCcEEECCCcEEccHHHHH--HHHc---CCEEEEEECCHHHHHHHHh
Confidence 32 34566775443332222222 2222 1245777899999999987
No 45
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.35 E-value=3.6e-12 Score=85.58 Aligned_cols=109 Identities=17% Similarity=0.194 Sum_probs=59.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
+..|+++|+|||||||+|+.|++.++.. .++.|.+.....+.. ..+.+...+ ....... -..+...+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~-----~i~~d~~~~~~~g~~-~~~~~~~~g---~~~~~~~----~~~~~~~~ 71 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRI-----LYDSDKEIEKRTGAD-IAWIFEMEG---EAGFRRR----EREMIEAL 71 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCC-----EEEHHHHHHHHHTSC-HHHHHHHHH---HHHHHHH----HHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCC-----EEEChHHHHHHcCCC-hhhHHHHhC---HHHHHHH----HHHHHHHH
Confidence 5689999999999999999999998765 456666655432210 011111111 1111111 11222223
Q ss_pred hcCCeEEEEeC--CchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 86 KNDGEVAIIDG--TTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 86 ~~~~~~vi~d~--~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
......+|..+ .......++.+.+ .+ .+|++.+|.+++.+|.
T Consensus 72 ~~~~~~vi~~gg~~~~~~~~~~~l~~-----~~---~vi~L~~~~e~l~~Rl 115 (185)
T 3trf_A 72 CKLDNIILATGGGVVLDEKNRQQISE-----TG---VVIYLTASIDTQLKRI 115 (185)
T ss_dssp HHSSSCEEECCTTGGGSHHHHHHHHH-----HE---EEEEEECCHHHHHHHH
T ss_pred HhcCCcEEecCCceecCHHHHHHHHh-----CC---cEEEEECCHHHHHHHH
Confidence 22233333322 3344554444333 22 5677889999999987
No 46
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=99.34 E-value=2.3e-12 Score=89.81 Aligned_cols=120 Identities=16% Similarity=0.157 Sum_probs=69.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQEDA 81 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (143)
+-+.+.|+|||||||+|+.|++.++..++ +.+++.+....... ...++.. +..+...+....+.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~i-----s~gdllR~~~~~~t~lG~~i~~~~~~----G~lvpdei~~~ll~~~ 79 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQI-----STGDMLRAAVKAGTPLGVEAKTYMDE----GKLVPDSLIIGLVKER 79 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEE-----CHHHHHHHHHHTTCHHHHHHHHHHTT----TCCCCHHHHHHHHHHH
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCee-----echHHHHHhccCCChHHHHHHHHHhh----ccccccHHHHHHHHHH
Confidence 56889999999999999999999876544 55554443221100 0001110 0001111111222221
Q ss_pred HHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhhcc
Q psy2713 82 TKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQSMC 141 (143)
Q Consensus 82 ~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~~~ 141 (143)
+.. ......+|+|+++.+..+.+.|.+ .+. ...+|++.||++++.+|...|..+
T Consensus 80 l~~-~~~~~g~ILDGfPRt~~Qa~~L~~-----~~~~~d~VI~Ldvp~e~l~~Rl~~R~~~ 134 (230)
T 3gmt_A 80 LKE-ADCANGYLFDGFPRTIAQADAMKE-----AGVAIDYVLEIDVPFSEIIERMSGRRTH 134 (230)
T ss_dssp HHS-GGGTTCEEEESCCCSHHHHHHHHH-----TTCCCSEEEEECCCHHHHHHHHHTEEEE
T ss_pred HhC-cccCCCeEecCCCCcHHHHHHHHH-----hCCCccEEEEEeCCHHHHHHHHHcCCcc
Confidence 111 112346899999888766555443 232 336788999999999999998743
No 47
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.34 E-value=7.4e-13 Score=91.98 Aligned_cols=118 Identities=16% Similarity=0.159 Sum_probs=65.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC-----CCCccccCchhhhhHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN-----SHDIFRVDNTEGYNIRQLSAREAQE 79 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (143)
++.+|+|+|+|||||||+|+.|++.++.. .++.|++.+....... ..+++.. +. ..........
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~-----~i~~d~~~~~~~~~~~~~g~~i~~~~~~-g~---~~~~~~~~~~-- 74 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHFELK-----HLSSGDLLRDNMLRGTEIGVLAKAFIDQ-GK---LIPDDVMTRL-- 74 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHSSSE-----EEEHHHHHHHHHHHTCHHHHHHHHHHTT-TC---CCCHHHHHHH--
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHcCCe-----EEechHHHHHhhhcCChHHHHHHHHHHc-CC---cCCHHHHHHH--
Confidence 35789999999999999999999987644 4566554433221000 0011110 00 0000000011
Q ss_pred HHHHHHhc-CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 80 DATKWLKN-DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 80 ~~~~~l~~-~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+.+.+.. .+..+|+|+...+..+.+.+.. + .... .+|++.+|.+++.+|...|.
T Consensus 75 -~~~~l~~~~~~~~vid~~~~~~~~~~~l~~-~---~~~~-~vi~L~~~~~~~~~R~~~R~ 129 (227)
T 1zd8_A 75 -ALHELKNLTQYSWLLDGFPRTLPQAEALDR-A---YQID-TVINLNVPFEVIKQRLTARW 129 (227)
T ss_dssp -HHHHHHTCTTSCEEEESCCCSHHHHHHHHT-T---SCCC-EEEEEECCHHHHHHHHTCEE
T ss_pred -HHHHHhcccCCCEEEeCCCCCHHHHHHHHH-h---cCCC-EEEEEECCHHHHHHHHHcCc
Confidence 1112221 2456889998776554433332 2 1222 56788899999999988764
No 48
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=99.33 E-value=1.3e-11 Score=87.20 Aligned_cols=120 Identities=19% Similarity=0.271 Sum_probs=64.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh--hh-hh-------hcCCCC--ccccCc-hh-hhhHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR--KH-LE-------LYNSHD--IFRVDN-TE-GYNIRQL 72 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~--~~-~~-------~~~~~~--~~~~~~-~~-~~~~~~~ 72 (143)
.+|+++|+|||||||+|+.|++.++.. +++.|.+.. .. +. ...+.+ +++... .+ ... ...
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~-----~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~-~~~ 75 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWP-----VVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILD-AES 75 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCC-----EEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCC-HHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCe-----EEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeecccccccc-HHH
Confidence 489999999999999999999998754 445554321 11 00 000111 111100 00 000 000
Q ss_pred HHHHHHHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhh----cCCEEEEEEeecCc-HHHHHHhhhhhc
Q psy2713 73 SAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARK----MGFKVLFVELIVQD-EEILEHNIKQSM 140 (143)
Q Consensus 73 ~~~~~~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~----~~~~~~~v~~~~~~-~~~~~r~~~r~~ 140 (143)
+... ...+++.+. .+..+|+++.... .+.. +++. .++.+.++++.+|. +++.+|..+|..
T Consensus 76 f~~~-~~~~i~~~~-~g~~vIl~gg~~~-----~~~~-~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~~ 140 (253)
T 2ze6_A 76 AHRR-LIFEVDWRK-SEEGLILEGGSIS-----LLNC-MAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRVA 140 (253)
T ss_dssp HHHH-HHHHHHTTT-TSSEEEEEECCHH-----HHHH-HHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-CCCCeEEeccHHH-----HHHH-HHhcccccccCceEEEEecchhHHHHHHHHHHHHH
Confidence 1111 122222223 3556666544331 2333 4444 56778889999998 999999988854
No 49
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.32 E-value=2.1e-12 Score=89.30 Aligned_cols=33 Identities=24% Similarity=0.359 Sum_probs=28.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
++.+|+|+|+|||||||+|+.|++.++..++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 36 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISA 36 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 457899999999999999999999998655543
No 50
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.28 E-value=2.5e-11 Score=80.30 Aligned_cols=32 Identities=28% Similarity=0.263 Sum_probs=26.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
.+|+++|+|||||||+++.|++.++...++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 48999999999999999999999876544333
No 51
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.28 E-value=6.3e-12 Score=84.38 Aligned_cols=39 Identities=23% Similarity=0.411 Sum_probs=31.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
+.+|+|+|+|||||||+|+.|++.++.. +++.|.+.+..
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~D~~~~~~ 40 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVG-----LLDTDVAIEQR 40 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCC-----EEEHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC-----EEeCchHHHHH
Confidence 3469999999999999999999998754 55777765543
No 52
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.27 E-value=1.2e-11 Score=81.81 Aligned_cols=111 Identities=23% Similarity=0.200 Sum_probs=59.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHHh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWLK 86 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (143)
+.|+++|+|||||||+|+.|++.++.. +++.|.+.....+.. ..+++...+... ... .-..+...+.
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~-----~i~~d~~~~~~~g~~-~~~~~~~~~~~~---~~~----~~~~~l~~l~ 67 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIP-----FYDVDEEVQKREGLS-IPQIFEKKGEAY---FRK----LEFEVLKDLS 67 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCC-----EEEHHHHHHHHHTSC-HHHHHHHSCHHH---HHH----HHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC-----EEECcHHHHHHcCCC-HHHHHHHhChHH---HHH----HHHHHHHHHh
Confidence 369999999999999999999998754 456666554432100 001111111110 001 1112223333
Q ss_pred cCCeEEEEeCC--chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhh
Q psy2713 87 NDGEVAIIDGT--TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQ 138 (143)
Q Consensus 87 ~~~~~vi~d~~--~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r 138 (143)
..+..||.++. ...++.++ .++. . ..+|++.||.+++.+|...|
T Consensus 68 ~~~~~Vi~~g~~~~~~~~~~~-----~l~~--~-~~~i~l~~~~e~~~~R~~~r 113 (168)
T 2pt5_A 68 EKENVVISTGGGLGANEEALN-----FMKS--R-GTTVFIDIPFEVFLERCKDS 113 (168)
T ss_dssp TSSSEEEECCHHHHTCHHHHH-----HHHT--T-SEEEEEECCHHHHHHHCBCT
T ss_pred ccCCeEEECCCCEeCCHHHHH-----HHHc--C-CEEEEEECCHHHHHHHHhCC
Confidence 33444554332 23333332 2222 2 25677889999999998775
No 53
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=99.27 E-value=2.4e-11 Score=83.62 Aligned_cols=115 Identities=16% Similarity=0.183 Sum_probs=64.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcC--CCC---ccccCchhhhhHHHHHHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN--SHD---IFRVDNTEGYNIRQLSAREAQEDAT 82 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (143)
.|+|+|+|||||||+|+.|++.++. ..++.|++.+....... +.. ++... ...........+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~-----~~i~~d~~~r~~~~~~~~~g~~i~~~~~~g----~~~~~~~~~~~i~--- 69 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGI-----PQISTGDMLRAAVKSGSELGKQAKDIMDAG----KLVTDELVIALVK--- 69 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCC-----CEEEHHHHHHHHHHHTCTTTGGGHHHHHHT----CCCCHHHHHHHHH---
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC-----eEEeHHHHHHHHHHcCChHHHHHHHHHHCC----CcCCHHHHHHHHH---
Confidence 5899999999999999999999864 35677666554322110 000 00000 0000011111111
Q ss_pred HHHhc--CCeEEEEeCCchhHHHHHHHHHHHHhhcCC-EEEEEEeecCcHHHHHHhhhhh
Q psy2713 83 KWLKN--DGEVAIIDGTTATMEKRKQIHDYFARKMGF-KVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 83 ~~l~~--~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
..+.. .+..+|+|+......+...+. +.+. +..++++.+|.+++++|...|.
T Consensus 70 ~~l~~~~~~~~~i~dg~~~~~~~~~~l~-----~~~~~~d~vi~l~~~~e~~~~R~~~R~ 124 (214)
T 1e4v_A 70 ERIAQEDCRNGFLLDGFPRTIPQADAMK-----EAGINVDYVLEFDVPDELIVDRIVGRR 124 (214)
T ss_dssp HHHTSGGGGGCEEEESCCCSHHHHHHHH-----HTTCCCSEEEEEECCHHHHHHHHHTEE
T ss_pred HHHhccccCCCEEEeCCCCCHHHHHHHH-----hcCCCCCEEEEEECCHHHHHHHHHCCc
Confidence 22211 134688998765554333332 2232 3357888999999999988765
No 54
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.26 E-value=2.2e-11 Score=80.78 Aligned_cols=37 Identities=19% Similarity=0.338 Sum_probs=30.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.+|+++|+|||||||+|+.|++.++.. .++.|.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~-----~id~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYE-----FVDTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCc-----EEcccHHHHH
Confidence 579999999999999999999998754 4566666544
No 55
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.26 E-value=6.3e-11 Score=83.50 Aligned_cols=44 Identities=20% Similarity=0.378 Sum_probs=35.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC-----CCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-----DHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-----~~~~~~~~~d~~~~ 47 (143)
.++.+|.++|+|||||||+|+.|++.++.. +.++.+++.|++.+
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 457899999999999999999999998765 33455778887754
No 56
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.26 E-value=1e-10 Score=78.70 Aligned_cols=26 Identities=38% Similarity=0.613 Sum_probs=23.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
++|+++|+|||||||+|+.|++.+..
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 37999999999999999999999843
No 57
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.26 E-value=9.7e-11 Score=81.65 Aligned_cols=126 Identities=21% Similarity=0.187 Sum_probs=67.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh---hhhhhhhhc-CCCCccccCchhhhhHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA---YRRKHLELY-NSHDIFRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
+..+|++.|+|||||||+++.|++.+.. +.+........ .... +... ...+.+. ..... ..........
T Consensus 25 ~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~~~~g~~-i~~~~~~~~~~~---~~~~~--ll~~a~r~~~ 97 (229)
T 4eaq_A 25 MSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEE-IRKIVLEGNDMD---IRTEA--MLFAASRREH 97 (229)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTTCHHHHH-HHHHTTC---CC---HHHHH--HHHHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCCCchHHH-HHHHHhCCCCCC---HHHHH--HHHHHHHHHH
Confidence 5679999999999999999999999987 65443221110 0000 0000 0001011 11100 0000011111
Q ss_pred ----HHHHHhcCCeEEEEe----------CC--chhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 81 ----ATKWLKNDGEVAIID----------GT--TATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 81 ----~~~~l~~~~~~vi~d----------~~--~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+...+. .|..||+| +. .......+++.. .......+..++.+.+|.+++.+|..+|.
T Consensus 98 ~~~~i~~~l~-~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~-~~~~~~~pd~vi~L~~~~e~~~~R~~~R~ 170 (229)
T 4eaq_A 98 LVLKVIPALK-EGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE-FAINGLYPDLTIYLNVSAEVGRERIIKNS 170 (229)
T ss_dssp CCCCCHHHHH-TTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHHHC-
T ss_pred HHHHHHHHHH-CCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 111222 47799999 54 334444445555 54444455677888999999999988874
No 58
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=99.23 E-value=8.1e-10 Score=76.21 Aligned_cols=130 Identities=16% Similarity=0.074 Sum_probs=70.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh---h---hhhhhhhcCCCCccccCchhhhhHHHHHH--H
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA---Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSA--R 75 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 75 (143)
|+..+|+|.|++||||||+++.|++++...++++....... + .+..+... ...-++ .....+. ..+ .
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~-~~~~~~---~~~~~ll-f~a~R~ 78 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAP-SDEPMA---ADTELLL-MFAARA 78 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSC-CSSCCC---HHHHHHH-HHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcC-CCCCCC---HHHHHHH-HHHHHH
Confidence 66789999999999999999999999988888775543221 1 11111110 000011 1111100 011 1
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 76 EAQEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 76 ~~~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+.+.+.+......|..||.|=.... .+.-..+.. .+.....+.++|++.+|.+++++|..+|.
T Consensus 79 ~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~-~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~ 153 (213)
T 4edh_A 79 QHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALES-FVQGDLRPDLTLVFDLPVEIGLARAAARG 153 (213)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHCCCS
T ss_pred HHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 1122222222234789999853221 111112222 22223456678889999999999988774
No 59
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.23 E-value=1.9e-10 Score=77.65 Aligned_cols=31 Identities=23% Similarity=0.444 Sum_probs=25.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
++|+++|+|||||||+++.|++.+...+++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v 31 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKV 31 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-E
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeE
Confidence 3799999999999999999999985545543
No 60
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.23 E-value=9.5e-10 Score=73.99 Aligned_cols=120 Identities=12% Similarity=0.073 Sum_probs=66.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
..+++++|+|||||||+++.|+..+. + ...++.|++..... ..++... . ... ........+.......
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g--~~~i~~d~~~~~~~-----~~~~~~~-~-~~~-~~~~~~~~l~~~~~~~ 69 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--N--SAYIEGDIINHMVV-----GGYRPPW-E-SDE-LLALTWKNITDLTVNF 69 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--S--EEEEEHHHHHTTCC-----TTCCCGG-G-CHH-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--C--eEEEcccchhhhhc-----cccccCc-c-chh-HHHHHHHHHHHHHHHH
Confidence 46899999999999999999987432 1 13455565543210 1111110 0 000 0001111122222222
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHh--hcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFAR--KMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+..+|+|... ....++.+.+ +++ ..+..+.++.+.++.+++.+|...|.
T Consensus 70 ~~~~~~~ild~~~-~~~~~~~~~~-~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~ 123 (189)
T 2bdt_A 70 LLAQNDVVLDYIA-FPDEAEALAQ-TVQAKVDDVEIRFIILWTNREELLRRDALRK 123 (189)
T ss_dssp HHTTCEEEEESCC-CHHHHHHHHH-HHHHHCSSEEEEEEEEECCHHHHHHHTTTSC
T ss_pred HhcCCcEEEeecc-CHHHHHHHHH-HHHhcccCCCeEEEEEeCCHHHHHHHHHhcc
Confidence 2235678899864 3445566666 654 22346667788899999999987664
No 61
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.22 E-value=1.2e-11 Score=83.35 Aligned_cols=113 Identities=15% Similarity=0.179 Sum_probs=61.4
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHH-HccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhH---HHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRY-LTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNI---RQLSAREA 77 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~-l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 77 (143)
..+++..|+++|+|||||||+++.|++. ++. ..++.|++.+.... .+.+...... ..+ .. ...
T Consensus 6 ~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g~-----~~id~d~~~~~~~~----~~~~~~~~~~-~~~~r~~~---~~~ 72 (184)
T 1y63_A 6 EQPKGINILITGTPGTGKTSMAEMIAAELDGF-----QHLEVGKLVKENHF----YTEYDTELDT-HIIEEKDE---DRL 72 (184)
T ss_dssp CCCSSCEEEEECSTTSSHHHHHHHHHHHSTTE-----EEEEHHHHHHHTTC----SCC------C-CCCCHHHH---HHH
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhcCCC-----EEeeHHHHHHHhhh----hhhHHHHhhh-cccCCCCH---HHH
Confidence 4556789999999999999999999998 554 45566665444200 0111100000 000 01 011
Q ss_pred HHHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 78 QEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 78 ~~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+..+...+...+ .+|+|..+.. .+++.... .+|++.||.+++.+|...|.
T Consensus 73 ~~~l~~~~~~~g-~~vi~~~~~~----------~~~~~~~~-~vi~l~~~~e~~~~Rl~~R~ 122 (184)
T 1y63_A 73 LDFMEPIMVSRG-NHVVDYHSSE----------LFPERWFH-MVVVLHTSTEVLFERLTKRQ 122 (184)
T ss_dssp HHHHHHHHTSSS-EEEEECSCCT----------TSCGGGCS-EEEEEECCHHHHHHHHHHTT
T ss_pred HHHHHHHHhccC-CEEEeCchHh----------hhhhccCC-EEEEEECCHHHHHHHHHhCC
Confidence 222223332333 4566755321 22221122 46778899999999988874
No 62
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.22 E-value=1.4e-10 Score=78.81 Aligned_cols=116 Identities=14% Similarity=0.206 Sum_probs=63.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhh-------cCCCCccccC-------------chh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL-------YNSHDIFRVD-------------NTE 65 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~-------~~~~~~~~~~-------------~~~ 65 (143)
-++|.++|.+||||||+|+.|++.++. .+++.|.+.+..... ..+.++++.. +.+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~-----~vid~D~~~~~~~~~~~~~i~~~fG~~~~~~g~ldr~~L~~~vF~~~~ 86 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGA-----HVVNVDRIGHEVLEEVKEKLVELFGGSVLEDGKVNRKKLAGIVFESRE 86 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCC-----EEEEHHHHHHHHHHHTHHHHHHHHCGGGBSSSSBCHHHHHHHHTTCHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCC-----EEEECcHHHHHHHHHHHHHHHHHhChhhcCCCCcCHHHHHHHHhCCHH
Confidence 478999999999999999999998764 455666664443221 1122323200 011
Q ss_pred hhhHHHHHHHHHH-HHHHHHHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 66 GYNIRQLSAREAQ-EDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 66 ~~~~~~~~~~~~~-~~~~~~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.....+.+....+ ..+...+...+..+|+|.+...... |.. . +. .+|.+.||.++.++|.+
T Consensus 87 ~~~~l~~i~hP~i~~~~~~~~~~~~~~vv~d~pll~e~~---~~~-~-----~d-~vi~v~a~~e~r~~Rli 148 (192)
T 2grj_A 87 NLKKLELLVHPLMKKRVQEIINKTSGLIVIEAALLKRMG---LDQ-L-----CD-HVITVVASRETILKRNR 148 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECTTTTTTT---GGG-G-----CS-EEEEEECCHHHHHHHCS
T ss_pred HHHHHHhhhCHHHHHHHHHHHHHcCCEEEEEEeceeecC---hHH-h-----CC-EEEEEECCHHHHHHHHH
Confidence 0011111111111 1122223333668999988665431 333 2 22 34677899999988863
No 63
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.22 E-value=4e-12 Score=85.11 Aligned_cols=108 Identities=16% Similarity=0.137 Sum_probs=59.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhh-hhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHL-ELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
++.+|+++|+|||||||+++.|++.++.. .++.|++..... ....+..++.....+ ...+..+..
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~-----~~~~d~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 75 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLK-----YINVGDLAREEQLYDGYDEEYDCPILDE---------DRVVDELDN 75 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCE-----EEEHHHHHHHHTCEEEEETTTTEEEECH---------HHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCe-----EEEHHHHHhhcchhhhhhhhhcCccCCh---------HHHHHHHHH
Confidence 45689999999999999999999998643 456666544321 000011111110000 011222222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+..++ +|+|..+.. .+.. .....+|++.||.+++.+|...|.
T Consensus 76 ~~~~g~--~vv~~~~~~----------~~~~-~~~~~vi~L~~~~e~l~~R~~~r~ 118 (180)
T 3iij_A 76 QMREGG--VIVDYHGCD----------FFPE-RWFHIVFVLRTDTNVLYERLETRG 118 (180)
T ss_dssp HHHHCC--EEEECSCCT----------TSCG-GGCSEEEEEECCHHHHHHHHHHTT
T ss_pred HHhcCC--EEEEechhh----------hcch-hcCCEEEEEECCHHHHHHHHHHcC
Confidence 333433 344544321 1111 122356778899999999998885
No 64
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.21 E-value=7.4e-10 Score=73.73 Aligned_cols=115 Identities=17% Similarity=0.179 Sum_probs=74.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
+..++.++|++||||||+++.+. .....++.|.++..... ..+...+ .... ...+......
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~-------~~~~~~~~d~~~g~~~~-~~~~~~~----------~~~~-~~~~~~~~~~ 68 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF-------KPTEVISSDFCRGLMSD-DENDQTV----------TGAA-FDVLHYIVSK 68 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS-------CGGGEEEHHHHHHHHCS-STTCGGG----------HHHH-HHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc-------cCCeEEccHHHHHHhcC-cccchhh----------HHHH-HHHHHHHHHH
Confidence 45799999999999999999853 12345666655433211 1011111 0000 0111111122
Q ss_pred HhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
....+..+++|.++.....+.++.. +++.......++.+..|...+..++.+|.
T Consensus 69 ~~~~g~~~~~~~~~~~s~g~~qrv~-iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 69 RLQLGKLTVVDATNVQESARKPLIE-MAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp HHHTTCCEEEESCCCSHHHHHHHHH-HHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred HHhCCCeEEEECCCCCHHHHHHHHH-HHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 2234678899999988888888888 99999888888889999999999977553
No 65
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=99.20 E-value=9.5e-10 Score=77.00 Aligned_cols=134 Identities=12% Similarity=0.009 Sum_probs=65.6
Q ss_pred CCCCeEEEEEccCCCChhHHHHHHHHHHccCCCC-ceeEehh---hhh---hhhhhhcCCCCccccCchhhhhHHHHHHH
Q psy2713 3 QFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHK-SKVFSVS---AYR---RKHLELYNSHDIFRVDNTEGYNIRQLSAR 75 (143)
Q Consensus 3 ~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~-~~~~~~d---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (143)
+|++.+|++.|++||||||+++.|++++...+++ +...... .+. +..........-+++ .....+...--.
T Consensus 24 ~~~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~~~~~~rep~~t~~g~~ir~~l~~~~~~~~~~~--~~e~lLf~A~R~ 101 (236)
T 3lv8_A 24 AMNAKFIVIEGLEGAGKSTAIQVVVETLQQNGIDHITRTREPGGTLLAEKLRALVKEEHPGEELQD--ITELLLVYAARV 101 (236)
T ss_dssp --CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSCCTTSCCCH--HHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCeeeeecCCCCCHHHHHHHHHHhhCCCcccCCH--HHHHHHHHHHHH
Confidence 4667899999999999999999999999888887 4444221 111 111100000010110 000100000001
Q ss_pred HHHHHHHHHHhcCCeEEEEeCCch------------hHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 76 EAQEDATKWLKNDGEVAIIDGTTA------------TMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 76 ~~~~~~~~~l~~~~~~vi~d~~~~------------~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+.+...+......|..||.|=... ..+....+.. .+.....+-+++.+.+|.+++++|..+|.
T Consensus 102 ~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~-~~~~~~~PDlvi~Ldv~~e~~~~Ri~~R~ 176 (236)
T 3lv8_A 102 QLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQ-TALGDFKPDLTLYLDIDPKLGLERARGRG 176 (236)
T ss_dssp HHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHC-----
T ss_pred HHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 122222222223478999984321 1111112222 22222355678888999999999988775
No 66
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=99.18 E-value=2.2e-09 Score=74.00 Aligned_cols=134 Identities=14% Similarity=0.004 Sum_probs=69.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCC-CceeEehhh---h---hhhhhhhcCC--CCccccCchhhhhHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDH-KSKVFSVSA---Y---RRKHLELYNS--HDIFRVDNTEGYNIRQLSA 74 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~-~~~~~~~d~---~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 74 (143)
|+..+|+|.|++||||||+++.|++++...++ ......... + .+.......+ ..-+++ .....+....-
T Consensus 1 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~~~~~~~--~~e~lL~~A~R 78 (213)
T 4tmk_A 1 MRSKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVGDEVITD--KAEVLMFYAAR 78 (213)
T ss_dssp -CCCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTTTCCCCH--HHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccccccCCh--HHHHHHHHHHH
Confidence 45689999999999999999999999988777 443332211 1 1111110000 000111 11111110000
Q ss_pred HHHHHHHHHHHhcCCeEEEEeCCchhHHH---------HHHHHH--HHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 75 REAQEDATKWLKNDGEVAIIDGTTATMEK---------RKQIHD--YFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 75 ~~~~~~~~~~l~~~~~~vi~d~~~~~~~~---------r~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+.+...+......|..||.|=....--. .+++.. ..+.....+-++|.+.+|.+++++|..+|.
T Consensus 79 ~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl~i~Ldv~~e~~~~Ri~~R~ 154 (213)
T 4tmk_A 79 VQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDLTLYLDVTPEVGLKRARARG 154 (213)
T ss_dssp HHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcC
Confidence 12223323222234789999853321110 112211 022222356678889999999999988874
No 67
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.17 E-value=1.4e-10 Score=79.15 Aligned_cols=27 Identities=19% Similarity=0.182 Sum_probs=24.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++.+|+|+|+|||||||+++.|++.++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 467999999999999999999999874
No 68
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.14 E-value=5.2e-10 Score=75.78 Aligned_cols=26 Identities=23% Similarity=0.528 Sum_probs=23.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
++|++.|+|||||||+++.|++.++.
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 26 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGY 26 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCC
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCC
Confidence 37999999999999999999999875
No 69
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.12 E-value=7.1e-11 Score=78.69 Aligned_cols=36 Identities=19% Similarity=0.354 Sum_probs=29.5
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.|+++|+|||||||+|+.|++.++.. .++.|.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~-----~~d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLV-----FLDSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCE-----EEEHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCC-----EEcccHHHHH
Confidence 69999999999999999999998754 4566665544
No 70
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.11 E-value=1.3e-10 Score=83.29 Aligned_cols=38 Identities=21% Similarity=0.307 Sum_probs=29.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
..+.+|+++|+|||||||+|+.|+ .++. .+++.|.+.+
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~-----~~id~D~~~~ 110 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGA-----YIIDSDHLGH 110 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTC-----EEEEHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCC-----cEEehhHHHH
Confidence 346899999999999999999999 4553 4566666533
No 71
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=99.11 E-value=5.3e-10 Score=86.88 Aligned_cols=119 Identities=14% Similarity=0.131 Sum_probs=64.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC-CCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD-HKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~-~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
+..+|+|+|++||||||+++.|+..+...+ .....+..|+++..... ... |+. .+.....+. +..+.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~---~l~-f~~--~~r~~~~r~-----i~~v~q 436 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSS---ELG-FSK--AHRDVNVRR-----IGFVAS 436 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTS---SCC-CSH--HHHHHHHHH-----HHHHHH
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhcc---ccC-CCH--HHHHHHHHH-----HHHHHH
Confidence 457899999999999999999999986432 23344666665443111 111 221 111111111 222222
Q ss_pred HHhcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhh
Q psy2713 84 WLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNI 136 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~ 136 (143)
.+...+..++..........++...+ +++..+ .++.|++.+|.+++.+|..
T Consensus 437 ~l~~~~~ivi~~~~~~~~~~r~~~r~-lL~~~g-~f~~V~L~~~~e~~~~R~~ 487 (552)
T 3cr8_A 437 EITKNRGIAICAPIAPYRQTRRDVRA-MIEAVG-GFVEIHVATPIETCESRDR 487 (552)
T ss_dssp HHHHTTCEEEECCCCCCHHHHHHHHH-HHHTTS-EEEEEEECC----------
T ss_pred HHHhcCCEEEEecCCccHHHHHHHHH-HHHHcC-CEEEEEEcCCHHHHHHhcc
Confidence 33334666776655444566777777 887766 7788999999999998854
No 72
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=99.06 E-value=1.9e-09 Score=75.03 Aligned_cols=126 Identities=15% Similarity=0.018 Sum_probs=64.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC----CCCceeEehhh---h---hhhhhhhcCCCCccccCchhhhhHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT----DHKSKVFSVSA---Y---RRKHLELYNSHDIFRVDNTEGYNIRQLSA 74 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~----~~~~~~~~~d~---~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (143)
+..+|+|.|++||||||+++.|++++... ++++....... . .+..... + + ++ ..... ....+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~rep~~t~~g~~ir~~l~~--~-~-~~---~~~~~-llf~a 95 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTREPGGTRLGETLREILLN--Q-P-MD---LETEA-LLMFA 95 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEESSSSSHHHHHHHHHHHH--S-C-CC---HHHHH-HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeecCCCCChHHHHHHHHHHc--C-C-CC---HHHHH-HHHHH
Confidence 45799999999999999999999999776 66654443221 1 1111110 0 1 11 11100 00001
Q ss_pred --HHHHHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 75 --REAQEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 75 --~~~~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
.+.+...+......|..||.|-.... .+.-..+.. .+.....+-++|.+.+|.+++.+|..+|.
T Consensus 96 ~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~-~~~~~~~PDl~I~Ldv~~e~~~~Ri~~R~ 173 (227)
T 3v9p_A 96 GRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALER-WVQGGFQPDLTVLFDVPPQIASARRGAVR 173 (227)
T ss_dssp HHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHH-HHHTTCCCSEEEEEECCSSCGGGTTTCCC
T ss_pred HHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHH-HHhcCCCCCEEEEEeCCHHHHHHHHHhcc
Confidence 11122222222234789999854322 111111222 22223456678889999999999987764
No 73
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.05 E-value=4.7e-10 Score=76.01 Aligned_cols=37 Identities=22% Similarity=0.460 Sum_probs=29.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
+++.+|.++|++||||||+++.|++. +.. +++.|++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~-----~id~d~~~ 42 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYP-----VLDLDALA 42 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCC-----EEEHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCE-----EEcccHHH
Confidence 45789999999999999999999987 543 45666543
No 74
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.04 E-value=6.1e-10 Score=73.77 Aligned_cols=38 Identities=18% Similarity=0.278 Sum_probs=30.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++.+|+++|+|||||||+++.|+..++. ..++.|.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~-----~~id~d~~~~ 40 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM-----EFYDSDQEIE 40 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC-----EEEEHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC-----CEEeccHHHH
Confidence 3568999999999999999999998764 3456665543
No 75
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=99.04 E-value=1.2e-09 Score=74.10 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=24.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
++.+|+|+|+|||||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999987
No 76
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.04 E-value=1e-09 Score=75.53 Aligned_cols=119 Identities=9% Similarity=0.069 Sum_probs=68.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhh----------hcCCCCccccCc-hhhhhHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE----------LYNSHDIFRVDN-TEGYNIRQLS 73 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~----------~~~~~~~~~~~~-~~~~~~~~~~ 73 (143)
..+.|.++|.+||||||+++.|++ ++.. +++.|.+-+.... ...+.++++.++ -+...+...+
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g~~-----vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~v 81 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RGAS-----LVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALI 81 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TTCE-----EEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CCCc-----EEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHH
Confidence 357899999999999999999988 6654 4455544333221 112444554332 1222222211
Q ss_pred -------------HHH-HHHHHHHHH-hcCCeEEEEeCCchhH-HHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhh
Q psy2713 74 -------------ARE-AQEDATKWL-KNDGEVAIIDGTTATM-EKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIK 137 (143)
Q Consensus 74 -------------~~~-~~~~~~~~l-~~~~~~vi~d~~~~~~-~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~ 137 (143)
.-- ....+.+.+ ......+|+|.+.... .. +.. .+ + .++.+.||.++.++|-++
T Consensus 82 F~d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d~pLL~E~~~---~~~-~~-----D-~vi~V~ap~e~r~~Rl~~ 151 (210)
T 4i1u_A 82 FSDEDARRRLEAITHPLIRAETEREARDAQGPYVIFVVPLLVESRN---WKA-RC-----D-RVLVVDCPVDTQIARVMQ 151 (210)
T ss_dssp HHCHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEECTTCTTCHH---HHH-HC-----S-EEEEEECCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEEEecccccCC---ccc-cC-----C-eEEEEECCHHHHHHHHHh
Confidence 111 112233333 2234578999987765 32 333 32 2 246678999999999888
Q ss_pred hh
Q psy2713 138 QS 139 (143)
Q Consensus 138 r~ 139 (143)
|.
T Consensus 152 Rd 153 (210)
T 4i1u_A 152 RN 153 (210)
T ss_dssp HH
T ss_pred cC
Confidence 84
No 77
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=99.04 E-value=4.1e-09 Score=77.16 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=29.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+.+|+|+|++||||||||..|++.++ ..+++.|.+
T Consensus 40 ~~lIvI~GPTgsGKTtLa~~LA~~l~-----~eiIs~Ds~ 74 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLSIDLAAHFP-----LEVINSDKM 74 (339)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTTSC-----EEEEECCSS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHCC-----CcEEccccc
Confidence 46999999999999999999999875 456666654
No 78
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.03 E-value=4.4e-10 Score=74.28 Aligned_cols=38 Identities=21% Similarity=0.258 Sum_probs=30.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
..+|+++|+|||||||+|+.|+++++... ++.|.+...
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~-----id~D~~~~~ 44 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEV-----LDTDMIISE 44 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCE-----EEHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCE-----EEChHHHHH
Confidence 46899999999999999999999998654 455655444
No 79
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=99.02 E-value=2.4e-08 Score=68.39 Aligned_cols=126 Identities=21% Similarity=0.164 Sum_probs=64.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh------hhhhhhhhcCCCCccccCchhhhhHHHHHH--HHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA------YRRKHLELYNSHDIFRVDNTEGYNIRQLSA--REA 77 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 77 (143)
.++|++-|+.||||||+++.|+++|.. ++++....... ..+..... +.+ ++ .....+ -..+ .+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~~-~~~v~~~~eP~~t~~g~~ir~~l~~--~~~-~~---~~~~~l-Lf~a~R~~~ 73 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGGVPTGEEIRKIVLE--GND-MD---IRTEAM-LFAASRREH 73 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEEESSTTCHHHHHHHHHHHS--SCC-CC---HHHHHH-HHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHHC-CCCEEEeeCCCCChHHHHHHHHHhc--ccC-CC---HHHHHH-HHHHHHHHH
Confidence 468999999999999999999999953 55544432211 11111111 111 11 111100 0001 111
Q ss_pred HHHHHHHHhcCCeEEEEeCCchh------------HHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 78 QEDATKWLKNDGEVAIIDGTTAT------------MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 78 ~~~~~~~l~~~~~~vi~d~~~~~------------~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+...+......|..||.|=.... .+.-..+.. .+...-.|-+++.+.+|.+++++|..+|..
T Consensus 74 ~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~~~~l~~-~~~~~~~PDl~i~Ld~~~e~~~~Ri~~r~~ 147 (205)
T 4hlc_A 74 LVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNE-FAINGLYPDLTIYLNVSAEVGRERIIKNSR 147 (205)
T ss_dssp HHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTSSCHHHHHHHHH-HHHTTCCCSEEEEEECCHHHHHHHHHC---
T ss_pred HHHHHHHHHHcCCEEEecCcccchHHHHhccccchHHHHHHHHH-HHhcCCCCCEEeeeCCCHHHHHHHHHhcCC
Confidence 22222222234788998854321 111112222 222223456788889999999999877753
No 80
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.00 E-value=9.1e-10 Score=75.05 Aligned_cols=36 Identities=25% Similarity=0.340 Sum_probs=27.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+.+|.++|+|||||||+++.|+. ++. .+++.|.+.+
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~-----~~id~d~~~~ 37 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGV-----PLVDADVVAR 37 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTC-----CEEEHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCC-----cccchHHHHH
Confidence 46899999999999999999987 543 3456665543
No 81
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.99 E-value=1.5e-09 Score=76.59 Aligned_cols=38 Identities=26% Similarity=0.371 Sum_probs=30.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
...|+++|+|||||||+++.|++.+++.+ +..|.+.+.
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~lg~~~-----~d~d~~~~~ 85 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSLGYTF-----FDCDTLIEQ 85 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHHTCEE-----EEHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCcE-----EeCcHHHHH
Confidence 46899999999999999999999987644 455555443
No 82
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.98 E-value=1.4e-09 Score=74.82 Aligned_cols=37 Identities=27% Similarity=0.359 Sum_probs=29.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++.+|+++|++||||||+++.|++ ++. .+++.|.+.+
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~-----~~id~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGI-----NVIDADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTC-----EEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCC-----EEEEccHHHH
Confidence 468999999999999999999987 543 4556665433
No 83
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.97 E-value=2.4e-10 Score=78.14 Aligned_cols=34 Identities=24% Similarity=0.385 Sum_probs=28.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
++|+|.|++||||||+++.|++.+...++++..+
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v~~~ 34 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRAAGRSVATL 34 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHEEEEEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEE
Confidence 3799999999999999999999987655544433
No 84
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.95 E-value=1.5e-10 Score=78.95 Aligned_cols=43 Identities=33% Similarity=0.341 Sum_probs=34.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.++.+|.++|++||||||+++.|+..+...+.++..++.|.+.
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 4568999999999999999999999886556656666666553
No 85
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.95 E-value=1.3e-08 Score=69.33 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
++|++-|+.||||||.++.|+++|...++++....
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 47899999999999999999999988888776553
No 86
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.94 E-value=5.6e-09 Score=71.18 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=30.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
++.+|.++|+|||||||+++.|++.+. ...++..|++.
T Consensus 20 ~~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~~ 57 (207)
T 2qt1_A 20 KTFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDFF 57 (207)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGGB
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCccc
Confidence 457899999999999999999987652 34566777653
No 87
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.94 E-value=5.9e-10 Score=75.84 Aligned_cols=36 Identities=19% Similarity=0.248 Sum_probs=28.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.+|.++|++||||||+++.|++ ++ ..++..|++.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g-----~~~i~~d~~~~~ 37 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG-----AYVLDADKLIHS 37 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT-----CEEEEHHHHHHG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC-----CEEEEccHHHHH
Confidence 4799999999999999999998 65 345666665443
No 88
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.92 E-value=9.4e-09 Score=69.02 Aligned_cols=119 Identities=13% Similarity=0.176 Sum_probs=61.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKWL 85 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (143)
..+|+++|+|||||||+++.|+..+. .....++.|++...... .....++. .... ........+.......
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~---~g~i~i~~d~~~~~~~~-~~~~~~~~-~~~~----~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPG---VPKVHFHSDDLWGYIKH-GRIDPWLP-QSHQ----QNRMIMQIAADVAGRY 79 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSS---SCEEEECTTHHHHTCCS-SCCCTTSS-SHHH----HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccC---CCeEEEcccchhhhhhc-ccccCCcc-chhh----hhHHHHHHHHHHHHHH
Confidence 57999999999999999999987632 11224455554332110 00112211 1101 0111111111111112
Q ss_pred hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 86 KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 86 ~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
...+..+++|..... ...+.+.. .+..+..+.+.++.++++.|-..|.
T Consensus 80 ~~~~~~~~~~~~~~~-~~l~~~~~-----~~~~~~~ls~~~~~~v~~~R~~~r~ 127 (191)
T 1zp6_A 80 AKEGYFVILDGVVRP-DWLPAFTA-----LARPLHYIVLRTTAAEAIERCLDRG 127 (191)
T ss_dssp HHTSCEEEECSCCCT-TTTHHHHT-----TCSCEEEEEEECCHHHHHHHHHTTC
T ss_pred hccCCeEEEeccCcH-HHHHHHHh-----cCCCeEEEEecCCHHHHHHHHHhcC
Confidence 234556788875432 12222221 1344556788899999999988773
No 89
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.92 E-value=9.6e-09 Score=71.94 Aligned_cols=31 Identities=16% Similarity=0.371 Sum_probs=27.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
++.+|+++|+|||||||+++.|+++++...+
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 3679999999999999999999999876544
No 90
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=98.91 E-value=2.6e-08 Score=75.39 Aligned_cols=45 Identities=29% Similarity=0.474 Sum_probs=40.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
+|.+|+++|++||||||++..|+.++...+.++.++..|.++...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa 143 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGA 143 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhH
Confidence 578999999999999999999999998889999999999887653
No 91
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.90 E-value=8e-09 Score=75.32 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=34.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHcc--CCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTW--TDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~--~~~~~~~~~~d~~~ 46 (143)
.+|.+|.++|++||||||+++.|+..+.. .+..+.+++.|.+.
T Consensus 90 ~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~ 134 (321)
T 3tqc_A 90 KVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134 (321)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccc
Confidence 45789999999999999999999988863 23456778888763
No 92
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=98.88 E-value=1.2e-08 Score=74.32 Aligned_cols=36 Identities=36% Similarity=0.422 Sum_probs=29.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
++.+|+++|++||||||+|..|++.++. .+++.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~-----~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPC-----ELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCE-----EEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCC-----cEEeccch
Confidence 3569999999999999999999999764 45555543
No 93
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=98.88 E-value=1.6e-08 Score=69.07 Aligned_cols=35 Identities=14% Similarity=0.168 Sum_probs=29.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCce
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSK 38 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~ 38 (143)
|+..+|.+.|++||||||+|+.|+++|+..+++.+
T Consensus 4 m~~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D~~ 38 (201)
T 3fdi_A 4 MKQIIIAIGREFGSGGHLVAKKLAEHYNIPLYSKE 38 (201)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHTTCCEECHH
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHhCcCEECHH
Confidence 55679999999999999999999999988766533
No 94
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.85 E-value=2.8e-08 Score=68.95 Aligned_cols=38 Identities=24% Similarity=0.365 Sum_probs=31.9
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHcc-CCCCcee
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKV 39 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~ 39 (143)
.++++.+|++.|++||||||+++.|++++.. .++++..
T Consensus 17 ~~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~ 55 (223)
T 3ld9_A 17 QGPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVV 55 (223)
T ss_dssp --CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeE
Confidence 3456789999999999999999999999987 7776665
No 95
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.83 E-value=8.3e-09 Score=70.65 Aligned_cols=27 Identities=19% Similarity=0.246 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++.+|+++|++||||||+++.|+..+.
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 357999999999999999999998864
No 96
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=98.83 E-value=6.3e-08 Score=67.16 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=30.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
++.+|.+.|++||||||+|+.|++.++...++.+++
T Consensus 13 ~~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~ 48 (223)
T 3hdt_A 13 KNLIITIEREYGSGGRIVGKKLAEELGIHFYDDDIL 48 (223)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHH
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHH
Confidence 457999999999999999999999998776655443
No 97
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.81 E-value=5.2e-08 Score=73.67 Aligned_cols=45 Identities=29% Similarity=0.466 Sum_probs=39.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~ 49 (143)
+|.+|+++|++||||||++..|+..+...+.++.++..|.++...
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a 140 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAA 140 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhH
Confidence 578999999999999999999999998888889899888776653
No 98
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=98.80 E-value=7.4e-08 Score=65.21 Aligned_cols=27 Identities=22% Similarity=0.279 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..++.++|++||||||+++.|+..++
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 457999999999999999999998753
No 99
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.78 E-value=3.9e-08 Score=66.03 Aligned_cols=26 Identities=23% Similarity=0.287 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+.+++++|++||||||+++.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999998764
No 100
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=98.75 E-value=4.6e-08 Score=70.97 Aligned_cols=37 Identities=32% Similarity=0.375 Sum_probs=30.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
|++.+|+++||+||||||+|..|++.++ ..+++.|.+
T Consensus 1 m~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds~ 37 (322)
T 3exa_A 1 MKEKLVAIVGPTAVGKTKTSVMLAKRLN-----GEVISGDSM 37 (322)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHTTT-----EEEEECCGG
T ss_pred CCCcEEEEECCCcCCHHHHHHHHHHhCc-----cceeecCcc
Confidence 5678999999999999999999999865 456677754
No 101
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=98.72 E-value=4.2e-08 Score=71.92 Aligned_cols=35 Identities=26% Similarity=0.514 Sum_probs=30.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+.+|+++|++||||||+|..|++.++ ..+++.|.+
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~-----~~iis~Ds~ 41 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFN-----GEIISGDSM 41 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT-----EEEEECCSS
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcC-----Cceeccccc
Confidence 46999999999999999999999976 456777765
No 102
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.72 E-value=6.3e-09 Score=74.89 Aligned_cols=43 Identities=14% Similarity=0.316 Sum_probs=33.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++.+|.++|++||||||+|+.|++.++..+.++.+++.|++.+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r 46 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 46 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhc
Confidence 4678999999999999999999998876667778888888764
No 103
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=98.71 E-value=8.1e-08 Score=69.61 Aligned_cols=45 Identities=22% Similarity=0.372 Sum_probs=37.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.++.+|+++|++||||||++..|+..+...+.++.++..|.++..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~ 146 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAA 146 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHH
Confidence 356899999999999999999999988766777778877766543
No 104
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.70 E-value=1.2e-07 Score=64.00 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=21.4
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.|+++||||||||||++.|.+.+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 589999999999999999987753
No 105
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.68 E-value=2.1e-07 Score=62.00 Aligned_cols=43 Identities=21% Similarity=0.164 Sum_probs=33.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~ 47 (143)
+...++++|+|||||||+++.++..+. ..+.....++..++..
T Consensus 37 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~ 80 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF 80 (180)
T ss_dssp GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH
Confidence 356899999999999999999998874 4566666666665543
No 106
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=98.68 E-value=1.2e-07 Score=68.67 Aligned_cols=35 Identities=37% Similarity=0.526 Sum_probs=29.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+|.+|+++||+||||||+|..|++.++ ..+++.|.
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~-----~~iis~Ds 43 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILP-----VELISVDS 43 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSC-----EEEEECCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC-----CcEEeccc
Confidence 467999999999999999999999965 45667665
No 107
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=98.67 E-value=9.5e-09 Score=69.76 Aligned_cols=35 Identities=26% Similarity=0.332 Sum_probs=28.6
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+|.++|++||||||+|+.|++.++... ++.|.+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~-----~d~d~~~~ 38 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPY-----LSSGLLYR 38 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCE-----EEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCce-----eccchHHH
Confidence 899999999999999999999987544 45555443
No 108
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=98.66 E-value=7.8e-09 Score=72.17 Aligned_cols=39 Identities=31% Similarity=0.342 Sum_probs=30.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
++|.+|++.|+|||||||+++.|++.++.. .++.|.+.+
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~-----~~d~g~~~r 45 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGAR-----YLDTGAMYR 45 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCE-----EEEHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCC-----cccCCcHHH
Confidence 356799999999999999999999998754 345555433
No 109
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=98.65 E-value=9.6e-09 Score=70.77 Aligned_cols=37 Identities=24% Similarity=0.411 Sum_probs=29.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+.+|.++|+|||||||+++.|++.++... ++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~-----~d~g~i~~ 41 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHL-----LDSGAIYR 41 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEE-----EEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCc-----ccCcceee
Confidence 46899999999999999999999887543 45555443
No 110
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=98.65 E-value=3e-07 Score=70.74 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=37.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
.++.+|+++|+|||||||++..|+..+...+.++.+++.|.++..
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r~a 143 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFRAG 143 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSSH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccchh
Confidence 356799999999999999999999999877888999988876554
No 111
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=98.59 E-value=1.2e-08 Score=70.10 Aligned_cols=39 Identities=26% Similarity=0.380 Sum_probs=30.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
|+|.+|+++|++||||||+++.|++.++.. .++.|.+.+
T Consensus 1 m~~~~i~i~G~~gsGkst~~~~l~~~~g~~-----~~~~d~~~~ 39 (219)
T 2h92_A 1 MKAINIALDGPAAAGKSTIAKRVASELSMI-----YVDTGAMYR 39 (219)
T ss_dssp --CCCEEEECCTTSSHHHHHHHHHHHTTCE-----EEEHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHhcCCc-----eecCChHHH
Confidence 457899999999999999999999988754 455555533
No 112
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.58 E-value=4.9e-07 Score=65.86 Aligned_cols=44 Identities=23% Similarity=0.288 Sum_probs=37.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
.++.+|+++|++||||||++..|+..+...+.++.++..|.++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~ 146 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRA 146 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcch
Confidence 35689999999999999999999998877778888887776544
No 113
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=98.57 E-value=7.9e-08 Score=65.65 Aligned_cols=42 Identities=26% Similarity=0.392 Sum_probs=33.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.++.+|.++|++||||||+++.|+..+...|.+...+..|.+
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~ 61 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGF 61 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCC
Confidence 346799999999999999999999888643445666776654
No 114
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=98.57 E-value=2.4e-07 Score=70.11 Aligned_cols=45 Identities=36% Similarity=0.485 Sum_probs=39.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAYRRK 48 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~~~~ 48 (143)
.+|.+|+++|++||||||++..|+..+... +.++.++..|.++..
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~ 143 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPA 143 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCcc
Confidence 357899999999999999999999999887 999999999876554
No 115
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=98.57 E-value=3.1e-07 Score=66.27 Aligned_cols=43 Identities=23% Similarity=0.262 Sum_probs=36.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR 47 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~ 47 (143)
++.+|+++|++||||||++..|+..+. ..|.++.++..|.++.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~ 147 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRI 147 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSST
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccc
Confidence 467999999999999999999998886 3688888888876543
No 116
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=98.54 E-value=3.4e-07 Score=68.51 Aligned_cols=34 Identities=21% Similarity=0.344 Sum_probs=28.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+.+|+++|++||||||+|..|++.++. .+++.|.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~-----~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNG-----EVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTE-----EEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCC-----eEeecCc
Confidence 468999999999999999999999863 4567665
No 117
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=98.52 E-value=3.2e-08 Score=69.70 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=26.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHK 36 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~ 36 (143)
..+|.++|++||||||+++.|++.|+...++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 4689999999999999999999998765443
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=98.52 E-value=6.8e-08 Score=69.52 Aligned_cols=43 Identities=21% Similarity=0.267 Sum_probs=33.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCC--CCceeE-ehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD--HKSKVF-SVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~--~~~~~~-~~d~~~ 46 (143)
.++.+|.++|++||||||+++.|++.+...+ .+...+ +.|++.
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~ 74 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFY 74 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGB
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEecccccc
Confidence 4578999999999999999999999886432 334445 787763
No 119
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.49 E-value=1.8e-07 Score=63.72 Aligned_cols=30 Identities=13% Similarity=0.128 Sum_probs=26.0
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+++..+|+|+|++|||||||++.|.+.+.
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456778999999999999999999998764
No 120
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.49 E-value=1.3e-05 Score=54.53 Aligned_cols=124 Identities=13% Similarity=0.122 Sum_probs=63.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccc--cCchhhhhHHHH---HHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR--VDNTEGYNIRQL---SAREAQE 79 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~---~~~~~~~ 79 (143)
++.+|+++|.|||||+|+|..+.+.++.. .+.+++..+..+.......+.++-. .+..-....+.. +......
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~--~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~R~~m~~~g~~~R~ 87 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGAD--VCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAFRKDMIRWGEEKRQ 87 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTT--TEEEECTHHHHHHHHHHTTTCCCC-------CCSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCC--CceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHHHHHHHHHHHHHHh
Confidence 45799999999999999999999877643 3456666654432111111222100 000000001111 1111111
Q ss_pred H---H-HHHH--hcCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHHHHHHh
Q psy2713 80 D---A-TKWL--KNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHN 135 (143)
Q Consensus 80 ~---~-~~~l--~~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~ 135 (143)
. . +... .....++|+|+.-...+ -+.+.+ . ++..+.+|.+.++.++-.+|.
T Consensus 88 ~d~~~~~~~~~~~~~~~~vII~dvR~~~E-v~~fr~-~---~g~~~~iirI~as~~~R~~Rg 144 (202)
T 3ch4_B 88 ADPGFFCRKIVEGISQPIWLVSDTRRVSD-IQWFRE-A---YGAVTQTVRVVALEQSRQQRG 144 (202)
T ss_dssp HCTTTTHHHHSBTCCCSEEEECCCCSHHH-HHHHHH-H---HGGGEEEEEEEECHHHHHHTT
T ss_pred cCchHHHHHHHHhcCCCcEEEeCCCCHHH-HHHHHH-h---CCCcEEEEEEECCHHHHHHHh
Confidence 0 0 1111 11234788888766554 233333 2 244477788889988877774
No 121
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=98.49 E-value=2e-06 Score=62.05 Aligned_cols=42 Identities=33% Similarity=0.519 Sum_probs=36.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
+.+|+++|++|+||||++..|+..+...+.++.++..|.++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r~ 139 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYRP 139 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCCH
Confidence 678999999999999999999998877788888888876544
No 122
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.48 E-value=7.6e-08 Score=65.20 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=24.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+++.+|+++|+|||||||+++.|+..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456799999999999999999999876
No 123
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=98.48 E-value=1.7e-07 Score=63.88 Aligned_cols=39 Identities=33% Similarity=0.521 Sum_probs=29.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.++.+|.++|++||||||+++.|+..++. ...++..|.+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~---~i~~v~~d~~ 42 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE---RVALLPMDHY 42 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG---GEEEEEGGGC
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC---CeEEEecCcc
Confidence 45679999999999999999999988752 2345555543
No 124
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.47 E-value=9.3e-07 Score=60.98 Aligned_cols=28 Identities=25% Similarity=0.261 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..+|++.|++||||||+++.|++++..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4679999999999999999999999975
No 125
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=98.46 E-value=6.4e-08 Score=67.36 Aligned_cols=39 Identities=21% Similarity=0.392 Sum_probs=30.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
.++.+|.++|++||||||+++.|++.++.. .++.|.+.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~-----~~d~d~~~~ 52 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFT-----YLDTGAMYR 52 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCE-----EEEHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCc-----eecCCCeeE
Confidence 356789999999999999999999988754 445555543
No 126
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=98.46 E-value=1.5e-07 Score=62.54 Aligned_cols=38 Identities=21% Similarity=0.135 Sum_probs=33.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.++|++||||||++..|+..+...++++.++..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 45899999999999999999999988778888887654
No 127
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.45 E-value=1.2e-07 Score=63.37 Aligned_cols=28 Identities=14% Similarity=0.189 Sum_probs=24.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+..+++++|++||||||+++.|...+.
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4567999999999999999999998753
No 128
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.44 E-value=4.3e-06 Score=63.08 Aligned_cols=44 Identities=27% Similarity=0.315 Sum_probs=38.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++.+|+++|++||||||++..|+..+...+.++.++..|.++..
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~a 140 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPA 140 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCch
Confidence 56789999999999999999999999877888888888866544
No 129
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=98.43 E-value=1.3e-06 Score=67.06 Aligned_cols=43 Identities=26% Similarity=0.391 Sum_probs=32.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.++.+|+|+|++||||||+++.|+..+...+-++.+...|.++
T Consensus 291 ~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 291 KAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred cCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 3568999999999999999999998876545445444455443
No 130
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=98.42 E-value=2.3e-06 Score=61.33 Aligned_cols=29 Identities=31% Similarity=0.460 Sum_probs=25.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..++|+|+||+||||+|+.+++.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l~~~~ 95 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLLHRLG 95 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 45799999999999999999999886543
No 131
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=98.42 E-value=1.7e-07 Score=72.16 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
...+|+|+|+|||||||+|+.|+++|+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 4579999999999999999999999986
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=9.2e-07 Score=66.21 Aligned_cols=29 Identities=34% Similarity=0.457 Sum_probs=25.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|.||||+|||++|+.+|..++..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~ 209 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCK 209 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCE
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCC
Confidence 46789999999999999999999998654
No 133
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.40 E-value=9.6e-07 Score=66.78 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|.||||+|||++|+.+|..++..
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~ 242 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNAT 242 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998654
No 134
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=98.38 E-value=4.5e-07 Score=62.40 Aligned_cols=42 Identities=17% Similarity=0.101 Sum_probs=34.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.+..++++|+||+||||+++.+++.+...+.+...++.+++.
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~ 92 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHA 92 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHH
Confidence 356899999999999999999999887767777777766543
No 135
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.38 E-value=1.1e-06 Score=66.50 Aligned_cols=29 Identities=34% Similarity=0.453 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|+||||+|||++|+.+|..++..
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~ 242 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGAN 242 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998754
No 136
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=98.37 E-value=2.6e-07 Score=66.41 Aligned_cols=30 Identities=20% Similarity=0.343 Sum_probs=26.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
.|..+++.|+||+|||++|+.+++.++...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l~~~~ 64 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKMGINP 64 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHHTCCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 467899999999999999999999986443
No 137
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=98.37 E-value=6.5e-07 Score=64.80 Aligned_cols=42 Identities=19% Similarity=0.372 Sum_probs=32.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~~ 45 (143)
.++.+|.++|++||||||+++.|+..+. -..-.+.+++.|.+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~ 121 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGF 121 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCc
Confidence 3467999999999999999999998876 22334556666654
No 138
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.37 E-value=1.2e-06 Score=66.06 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=25.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|.||||+|||++|+.+|..++..
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~ 233 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAA 233 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998654
No 139
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=98.36 E-value=3.8e-06 Score=57.33 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++++|+||+||||+++.+++.+...
T Consensus 45 ~~~~ll~G~~G~GKT~l~~~~~~~~~~~ 72 (250)
T 1njg_A 45 HHAYLFSGTRGVGKTSIARLLAKGLNCE 72 (250)
T ss_dssp CSEEEEECSTTSCHHHHHHHHHHHHHCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4589999999999999999999888643
No 140
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.35 E-value=7.2e-07 Score=60.31 Aligned_cols=41 Identities=24% Similarity=0.145 Sum_probs=33.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~ 47 (143)
..++++|+||+||||+|+.++..+...+.+...++...+..
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~ 95 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFR 95 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHH
Confidence 68999999999999999999998876667666677665443
No 141
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.32 E-value=6.7e-06 Score=55.92 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=26.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+++++|+|||||||++..++. ..+..+.+++.+
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~---~~~~~v~~i~~~ 54 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGL---LSGKKVAYVDTE 54 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHH---HHCSEEEEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHH---HcCCcEEEEECC
Confidence 46899999999999999999987 223444555543
No 142
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=98.32 E-value=4.4e-06 Score=59.25 Aligned_cols=28 Identities=32% Similarity=0.425 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++|+|+||+||||+|+.+++.++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~ 77 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA 77 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4567999999999999999999998754
No 143
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=1.8e-06 Score=65.60 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=26.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|.||||+|||++|+.+|..++..
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~ 270 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDAT 270 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCE
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCC
Confidence 46789999999999999999999998754
No 144
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=98.30 E-value=2.3e-07 Score=70.22 Aligned_cols=44 Identities=34% Similarity=0.526 Sum_probs=37.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRK 48 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~ 48 (143)
++.+|+++|+|||||||++..|+..+...+.++.++..|.++..
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r~~ 141 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYRPA 141 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCCTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccCch
Confidence 46799999999999999999999988777788888888866544
No 145
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=98.30 E-value=2.1e-05 Score=57.02 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=31.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+++++|.||+||||++..++......+.++.+|+.+
T Consensus 68 G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE 105 (315)
T 3bh0_A 68 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 105 (315)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECC
Confidence 46899999999999999999997765556667777654
No 146
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=2.3e-06 Score=64.48 Aligned_cols=29 Identities=38% Similarity=0.488 Sum_probs=25.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.|.-|+|+||||+|||++|+.+|..++..
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~ 243 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSAT 243 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCE
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCC
Confidence 46789999999999999999999998754
No 147
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=98.28 E-value=7.8e-07 Score=59.37 Aligned_cols=37 Identities=22% Similarity=0.202 Sum_probs=30.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
..+++++|++||||||+.+.|...+...+.++..+..
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~ 42 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKH 42 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEee
Confidence 4588999999999999999999888666666666644
No 148
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.27 E-value=6.4e-06 Score=60.67 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=30.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|+|||||||++..++..+...+..+.+++.+
T Consensus 61 G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 61 GRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 46899999999999999999997765556666666554
No 149
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.27 E-value=5.4e-07 Score=62.77 Aligned_cols=27 Identities=22% Similarity=0.320 Sum_probs=24.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++.+|++.|++||||||+++.|++++.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999974
No 150
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.26 E-value=2.5e-06 Score=62.95 Aligned_cols=38 Identities=18% Similarity=0.146 Sum_probs=30.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++.+.|+|||||||++..++..+...+-++..++.+
T Consensus 61 G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E 98 (356)
T 3hr8_A 61 GRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAE 98 (356)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecc
Confidence 46899999999999999999998775555555555543
No 151
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.26 E-value=7.5e-07 Score=62.27 Aligned_cols=29 Identities=24% Similarity=0.458 Sum_probs=25.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
++.+|.++|++||||||+++.|+..++..
T Consensus 24 ~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 24 RPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 45789999999999999999999987654
No 152
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=98.26 E-value=6.5e-06 Score=59.73 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.-|+|+|+||+|||++|+.+++.++.
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~~ 77 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEANS 77 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHCC
Confidence 467999999999999999999998754
No 153
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.26 E-value=7.8e-07 Score=65.04 Aligned_cols=42 Identities=24% Similarity=0.396 Sum_probs=34.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.++.++.++|++||||||+++.|+..+...+-++.+...|.+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 457899999999999999999999888666666666666544
No 154
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=98.25 E-value=2.1e-05 Score=58.05 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=31.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|+|||||||+|..++..+...+.++.+++.+
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46899999999999999999998775556667777663
No 155
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.25 E-value=1.1e-05 Score=59.10 Aligned_cols=38 Identities=26% Similarity=0.253 Sum_probs=32.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|.||+||||++..++..+...+.++.+|+.+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlE 83 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLE 83 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCC
Confidence 35899999999999999999998776567777788765
No 156
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.25 E-value=1.4e-06 Score=61.08 Aligned_cols=40 Identities=28% Similarity=0.529 Sum_probs=35.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+++.+++++|.+||||||++..|+..+. .+.++.++..|.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~-~g~~v~vvd~D~ 51 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLE-DNYKVAYVNLDT 51 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHT-TTSCEEEEECCS
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHH-CCCeEEEEeCCC
Confidence 4567999999999999999999999998 888888887663
No 157
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=98.24 E-value=5.9e-06 Score=59.60 Aligned_cols=109 Identities=12% Similarity=0.144 Sum_probs=70.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+|-|.-||||||.++.|.+.+.-.++++..+........ ..+++ ...+..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~~~Pt~eE~------~~~yl-------------------~R~~~~ 139 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVALTKPTETER------GQWYF-------------------QRYVAT 139 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEeCCcChHHH------hchHH-------------------HHHHHh
Confidence 47899999999999999999999999888876666544331111 01111 112223
Q ss_pred HhcCCeEEEEeCCchhH------------HHHHH-------HHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhh
Q psy2713 85 LKNDGEVAIIDGTTATM------------EKRKQ-------IHDYFARKMGFKVLFVELIVQDEEILEHNIKQS 139 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~------------~~r~~-------~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~ 139 (143)
+-..|.++|+|-+.... ...+. +.. ++...|.+++-+++.+|.++-.+|...|.
T Consensus 140 LP~~G~IvIfDRswYs~v~~~rv~g~~~~~e~~~~~~~In~FE~-~L~~~G~~~lKf~L~Is~eeq~kR~~~R~ 212 (304)
T 3czq_A 140 FPTAGEFVLFDRSWYNRAGVEPVMGFCTPDQYEQFLKEAPRFEE-MIANEGIHLFKFWINIGREMQLKRFHDRR 212 (304)
T ss_dssp CCCTTCEEEEEECGGGGTTHHHHHTSSCHHHHHHHHHHHHHHHH-HHHHHTCEEEEEEEECCHHHHHHHHHHHH
T ss_pred cccCCeEEEEECCcchHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHHhCCCeeEEEEEECCHHHHHHHHHHhh
Confidence 32458888888664221 11111 111 23345889999999999999999987664
No 158
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.23 E-value=1.2e-06 Score=56.84 Aligned_cols=37 Identities=11% Similarity=0.053 Sum_probs=28.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
...++++|++||||||+++.++..+...+.+...++.
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~ 72 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDA 72 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEET
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcH
Confidence 3578899999999999999999887544544444433
No 159
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=98.23 E-value=1.1e-06 Score=58.03 Aligned_cols=28 Identities=29% Similarity=0.358 Sum_probs=24.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++++|+||+||||+++.+++.+..
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 69 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRIIN 69 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3567899999999999999999998754
No 160
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=98.22 E-value=1.5e-05 Score=59.08 Aligned_cols=39 Identities=15% Similarity=0.141 Sum_probs=31.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..++++.|+|||||||+|..++......+..+.+++.+.
T Consensus 74 G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~ 112 (366)
T 1xp8_A 74 GRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH 112 (366)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 458899999999999999999987655566677776653
No 161
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=98.21 E-value=2.4e-06 Score=62.03 Aligned_cols=42 Identities=19% Similarity=0.342 Sum_probs=32.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC-C-CCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-D-HKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~-~~~~~~~~d~~ 45 (143)
.++.+|.++|++||||||+++.|+..+... | .++.++..|.+
T Consensus 88 ~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~ 131 (312)
T 3aez_A 88 PVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGF 131 (312)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGG
T ss_pred CCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCcc
Confidence 456799999999999999999999877432 2 34566777654
No 162
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=98.21 E-value=9.8e-06 Score=56.14 Aligned_cols=23 Identities=30% Similarity=0.316 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
..++.+.|++||||||+++.|+.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 46899999999999999999984
No 163
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=98.21 E-value=1.1e-06 Score=63.58 Aligned_cols=40 Identities=30% Similarity=0.313 Sum_probs=31.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+|.++|++||||||+++.|+..+...+-++.+...|.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 4679999999999999999999988865555555555443
No 164
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.19 E-value=1.3e-06 Score=63.20 Aligned_cols=41 Identities=27% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
++.++.++|++||||||+++.|+..+...+-++.+...|.+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~ 139 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeeccc
Confidence 56799999999999999999999887544444444444433
No 165
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.17 E-value=3.6e-07 Score=64.49 Aligned_cols=27 Identities=19% Similarity=0.222 Sum_probs=24.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++.+|+|.|++||||||+++.|++.+.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 357999999999999999999998873
No 166
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=98.17 E-value=1.7e-06 Score=58.12 Aligned_cols=36 Identities=19% Similarity=0.194 Sum_probs=28.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
+..+++++|+|||||||++..++..+...+.++.++
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 456899999999999999988887765555555444
No 167
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=98.17 E-value=1.5e-06 Score=64.20 Aligned_cols=43 Identities=28% Similarity=0.353 Sum_probs=32.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.++.+|.|+|++||||||+++.|+..+...+-++.+...|.++
T Consensus 155 ~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 155 RKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp SSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 3568999999999999999999998876545445555545443
No 168
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.15 E-value=1.2e-06 Score=59.47 Aligned_cols=26 Identities=35% Similarity=0.414 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+++++|++||||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 46899999999999999999998763
No 169
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=98.15 E-value=2e-05 Score=59.66 Aligned_cols=40 Identities=18% Similarity=0.216 Sum_probs=30.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~d~~ 45 (143)
+..++|+|+||+||||+++.++..+... +.+...++...+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~ 171 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKF 171 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHH
Confidence 4578999999999999999999887433 444555565544
No 170
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=98.15 E-value=5.1e-05 Score=57.58 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=31.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+++++|.||+||||++..++......+.++.+|+.+
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 46899999999999999999998775557777787665
No 171
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=98.15 E-value=1.3e-06 Score=61.16 Aligned_cols=28 Identities=32% Similarity=0.406 Sum_probs=24.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++++|+||+||||+|+.+++.++.
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~~ 65 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQV 65 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3457899999999999999999998754
No 172
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=98.14 E-value=8.9e-06 Score=59.91 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.-|+|+|+||+|||++|+.+++.++.
T Consensus 84 ~~~iLL~GppGtGKT~la~ala~~~~~ 110 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLAKAVATEANS 110 (355)
T ss_dssp CCCEEEECSTTSCHHHHHHHHHHHHTC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCC
Confidence 356899999999999999999999853
No 173
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.13 E-value=2.7e-06 Score=62.72 Aligned_cols=41 Identities=24% Similarity=0.324 Sum_probs=34.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.++.+|+++|.||+||||++..|+..+...+.++.++..|.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~Dp 117 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVDP 117 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC-
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecCC
Confidence 34678999999999999999999998877788888887763
No 174
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=98.13 E-value=8.9e-07 Score=58.92 Aligned_cols=36 Identities=25% Similarity=0.367 Sum_probs=28.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
.++.++|++||||||+++.|...+...+++...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~ 38 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKR 38 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEE
Confidence 578999999999999999999988665555555443
No 175
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=98.13 E-value=1.9e-06 Score=56.80 Aligned_cols=28 Identities=29% Similarity=0.286 Sum_probs=24.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++++|+||+||||+++.+++.+..
T Consensus 42 ~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 42 TKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 3457899999999999999999998744
No 176
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=98.13 E-value=2.8e-06 Score=60.95 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=28.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++|+|+||+||||+|+.|++.+.........++..
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~ 84 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 84 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGG
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecc
Confidence 4799999999999999999999885543334444443
No 177
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.12 E-value=1.5e-06 Score=60.90 Aligned_cols=27 Identities=37% Similarity=0.495 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.-++++|+||+||||+|+.++..++.
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~ 71 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKV 71 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 456999999999999999999988753
No 178
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=98.12 E-value=3.2e-06 Score=61.21 Aligned_cols=40 Identities=15% Similarity=0.042 Sum_probs=31.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+..++++|+||+||||+++.+++.+...+.+...++.+++
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~ 76 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDF 76 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHH
Confidence 3578999999999999999999988544555666666654
No 179
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.11 E-value=2e-06 Score=57.53 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+.++|++||||||+.+.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999998875
No 180
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.11 E-value=6.9e-05 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.270 Sum_probs=29.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC------CCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT------DHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~------~~~~~~~~~d~ 44 (143)
..+++++|+|||||||++..++...... +..+.+++.+.
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4589999999999999999999765332 34555665543
No 181
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=98.11 E-value=1.2e-06 Score=63.12 Aligned_cols=28 Identities=29% Similarity=0.305 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..|+|+|+||+||||+|+.++..++.
T Consensus 48 ~~~~vLL~Gp~GtGKT~la~ala~~~~~ 75 (301)
T 3cf0_A 48 PSKGVLFYGPPGCGKTLLAKAIANECQA 75 (301)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTC
T ss_pred CCceEEEECCCCcCHHHHHHHHHHHhCC
Confidence 3568999999999999999999998753
No 182
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.11 E-value=1.6e-06 Score=59.36 Aligned_cols=26 Identities=12% Similarity=0.317 Sum_probs=23.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..+++.|+||+||||+|..|++.+.
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhC
Confidence 45799999999999999999999874
No 183
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=98.11 E-value=5.2e-05 Score=55.53 Aligned_cols=28 Identities=36% Similarity=0.405 Sum_probs=24.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+..++++|+||+||||+++.+++.+.
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 3466899999999999999999998873
No 184
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.10 E-value=2e-06 Score=59.41 Aligned_cols=27 Identities=15% Similarity=0.148 Sum_probs=23.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..+++++|++||||||+.+.|...+.
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 356999999999999999999998764
No 185
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=98.10 E-value=1.4e-06 Score=64.26 Aligned_cols=29 Identities=34% Similarity=0.461 Sum_probs=25.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.+..++|.|+||+|||++|+.|++.++..
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~ 78 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVP 78 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 35679999999999999999999998544
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=98.10 E-value=8.6e-06 Score=65.85 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=25.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.|.-|+|.|+||+|||++|+.++..++.
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~ 264 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 4678999999999999999999988754
No 187
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.09 E-value=4.7e-06 Score=60.31 Aligned_cols=42 Identities=14% Similarity=0.145 Sum_probs=35.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc-cCCCCceeEehhhhhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT-WTDHKSKVFSVSAYRR 47 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~-~~~~~~~~~~~d~~~~ 47 (143)
...++|.|+||+|||++|..++..+. ..+.++..++..++..
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~ 194 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAI 194 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHH
Confidence 46899999999999999999999887 7777777777766544
No 188
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=98.08 E-value=2.3e-06 Score=60.54 Aligned_cols=30 Identities=33% Similarity=0.407 Sum_probs=25.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..+..++++|+||+||||+|+.+++.++..
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~~~ 91 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESNFP 91 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHTCS
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 345689999999999999999999987543
No 189
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=98.08 E-value=1.4e-05 Score=58.90 Aligned_cols=27 Identities=26% Similarity=0.427 Sum_probs=24.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+..|+|+|+||+||||+|+.+++.++
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 356899999999999999999998874
No 190
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=98.07 E-value=1.6e-06 Score=65.66 Aligned_cols=31 Identities=26% Similarity=0.349 Sum_probs=26.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.+.-|+|+|+||+||||+|+.|++.++..++
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~ 79 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCce
Confidence 3567999999999999999999999865443
No 191
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=98.07 E-value=5e-05 Score=52.44 Aligned_cols=38 Identities=18% Similarity=0.101 Sum_probs=27.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH-ccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL-TWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l-~~~~~~~~~~~~d 43 (143)
..+++++|.||+|||++|.+++... ...+..+.+++.+
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 4689999999999999999987542 2334555566543
No 192
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=98.07 E-value=1.6e-06 Score=61.91 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..+++.|+||+||||+|+.+++.++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~ 80 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSA 80 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCC
Confidence 568999999999999999999998753
No 193
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=98.07 E-value=2e-06 Score=63.35 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=25.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
...|+++|+|||||||+++.|++.++..+
T Consensus 24 ~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 24 RVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred eeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 45699999999999999999999887654
No 194
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.07 E-value=1.2e-06 Score=60.52 Aligned_cols=26 Identities=27% Similarity=0.344 Sum_probs=17.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHH-HHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLS-RYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~-~~l 30 (143)
+..++.++|++||||||+++.|+ ..+
T Consensus 26 ~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 26 VGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 34689999999999999999999 765
No 195
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=98.07 E-value=0.00011 Score=55.73 Aligned_cols=113 Identities=17% Similarity=0.172 Sum_probs=59.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehhh----hhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVSA----YRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQED 80 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
..+++++|.||+||||++..++..... .+.++.+|+.+. +...+.....+.+.-... .+..-... ...+..
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~~~~~l~~R~~~~~~~i~~~~l~--~g~l~~~~--~~~~~~ 275 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVR--LGQLTDRD--FSRLVD 275 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSSCHHHHHHHHHHHHTTCCTTTCC--GGGCCHHH--HHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHcCCCHHHHh--CCCCCHHH--HHHHHH
Confidence 368999999999999999999977643 366777776642 222211111111111000 00000000 111223
Q ss_pred HHHHHhcCCeEEEEeCCchh-HHHHHHHHHHHHhhcCCEEEEEEe
Q psy2713 81 ATKWLKNDGEVAIIDGTTAT-MEKRKQIHDYFARKMGFKVLFVEL 124 (143)
Q Consensus 81 ~~~~l~~~~~~vi~d~~~~~-~~~r~~~~~~~~~~~~~~~~~v~~ 124 (143)
+...+.. ....+.|.+..+ .+.+..+.. +.++++..+++|.-
T Consensus 276 a~~~l~~-~~l~i~d~~~~s~~~l~~~~~~-l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 276 VASRLSE-APIYIDDTPDLTLMEVRARARR-LVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHT-SCEEEECCTTCBHHHHHHHHHH-HHHHSCCCEEEEEC
T ss_pred HHHHHhc-CCEEEECCCCCCHHHHHHHHHH-HHHHcCCCEEEEcC
Confidence 3333433 345555654333 344555666 77777888877754
No 196
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.06 E-value=1.4e-05 Score=58.27 Aligned_cols=23 Identities=35% Similarity=0.390 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.++++.|+||+||||+|.+++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 56799999999999999999876
No 197
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=98.06 E-value=1.6e-05 Score=58.21 Aligned_cols=28 Identities=25% Similarity=0.250 Sum_probs=24.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++++|+||+||||+++.+++.+.+.
T Consensus 38 ~~~~ll~G~~G~GKT~la~~la~~l~~~ 65 (373)
T 1jr3_A 38 HHAYLFSGTRGVGKTSIARLLAKGLNCE 65 (373)
T ss_dssp CSEEEEESCTTSSHHHHHHHHHHHHSCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4578999999999999999999998653
No 198
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=98.05 E-value=4.4e-05 Score=55.68 Aligned_cols=29 Identities=31% Similarity=0.449 Sum_probs=25.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
+..++|+|+||+||||+|+.+++.+....
T Consensus 24 ~~a~L~~G~~G~GKt~~a~~la~~l~~~~ 52 (334)
T 1a5t_A 24 HHALLIQALPGMGDDALIYALSRYLLCQQ 52 (334)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHTCSS
T ss_pred ceeEEEECCCCchHHHHHHHHHHHHhCCC
Confidence 56799999999999999999999987543
No 199
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=98.05 E-value=3.7e-05 Score=51.68 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus 3 vi~v~s~kgG~GKTt~a~~la~~la~~g~~vlliD~D~ 40 (206)
T 4dzz_A 3 VISFLNPKGGSGKTTAVINIATALSRSGYNIAVVDTDP 40 (206)
T ss_dssp EEEECCSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 44555588999999999999999988899999998874
No 200
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=98.04 E-value=4e-06 Score=57.04 Aligned_cols=26 Identities=27% Similarity=0.174 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...|+++|++||||||+|..|+++..
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC
Confidence 46799999999999999999998753
No 201
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=98.03 E-value=2.7e-06 Score=60.59 Aligned_cols=25 Identities=36% Similarity=0.408 Sum_probs=22.3
Q ss_pred EEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
-+++.|+|||||||+++.|+..++.
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3999999999999999999987653
No 202
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.03 E-value=3e-06 Score=61.84 Aligned_cols=27 Identities=41% Similarity=0.400 Sum_probs=23.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++++|+||+||||+++.++..++.
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l~~ 77 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASELQT 77 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHHTC
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHhCC
Confidence 357899999999999999999998853
No 203
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=98.03 E-value=1.7e-06 Score=60.88 Aligned_cols=30 Identities=37% Similarity=0.393 Sum_probs=25.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
+.-++++|+||+||||+|+.+++.++...+
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345889999999999999999998865443
No 204
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=98.03 E-value=4.2e-05 Score=58.78 Aligned_cols=111 Identities=12% Similarity=0.063 Sum_probs=70.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATK 83 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (143)
..+.+|+|-|..||||+|.++.|.+.+.-.|+++..+........ ..+++ ...+.
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~~~Pt~~E~------~~~yl-------------------~R~~~ 95 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSFLRPSDEEL------ERPPQ-------------------WRFWR 95 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECSSCCHHHH------TSCTT-------------------HHHHH
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhc------cCChh-------------------hhHHH
Confidence 347899999999999999999999999887776666644433222 11221 11222
Q ss_pred HHhcCCeEEEEeCCchhHH------------HHH----H---HHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 84 WLKNDGEVAIIDGTTATME------------KRK----Q---IHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 84 ~l~~~~~~vi~d~~~~~~~------------~r~----~---~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
.+-..|.++|+|-+....- ..+ . +.. ++...|+.++.+++.+|.++-.+|...|..
T Consensus 96 ~lP~~G~IvIfdRSwYs~~~v~rv~g~~~~~~~~~~~~~i~~FE~-~L~~~g~~i~KffL~is~eeq~kRl~~R~~ 170 (500)
T 3czp_A 96 RLPPKGRTGIFFGNWYSQMLYARVEGHIKEAKLDQAIDAAERFER-MLCDEGALLFKFWFHLSKKQLKERLKALEK 170 (500)
T ss_dssp HCCCTTCEEEEESCHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHH-HHHHTTCEEEEEEEECCHHHHHHCC-----
T ss_pred hCCCCCeEEEEeCchhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHhcCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 3434578888887643221 111 1 122 355568999999999999999999888754
No 205
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=98.03 E-value=3.9e-06 Score=57.45 Aligned_cols=38 Identities=18% Similarity=0.245 Sum_probs=28.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++++.|+|||||||+++.++..+...+-++.+++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 36899999999999999999996654334445555543
No 206
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=98.02 E-value=0.00016 Score=54.17 Aligned_cols=24 Identities=29% Similarity=0.339 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++.++|+||||||||+..|+-.
T Consensus 178 Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 178 GSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCChHHHHHHHHHH
Confidence 358999999999999999988744
No 207
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.01 E-value=2.9e-06 Score=58.37 Aligned_cols=26 Identities=23% Similarity=0.273 Sum_probs=23.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+..++.++|++||||||+.+.|+..+
T Consensus 22 ~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 22 NIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 34689999999999999999999865
No 208
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=98.01 E-value=3.7e-06 Score=54.17 Aligned_cols=41 Identities=20% Similarity=0.359 Sum_probs=26.7
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcH
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDE 129 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (143)
....+++|.+.........+.+ .+++.+.++++|---++..
T Consensus 81 ~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~p~ilv~nK~Dl~ 121 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQADYEVAE-YLRRKGKPVILVATKVDDP 121 (161)
T ss_dssp SEEEEEEESSSCCCHHHHHHHH-HHHHHTCCEEEEEECCCSG
T ss_pred CEEEEEEECCCcccHhHHHHHH-HHHhcCCCEEEEEECcccc
Confidence 3556778988744444455666 6666678887776666654
No 209
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.01 E-value=3.6e-06 Score=54.18 Aligned_cols=27 Identities=26% Similarity=0.318 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.-|++.|+||+|||++|+.+.+....
T Consensus 24 ~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 24 DIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp CSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 345899999999999999999877543
No 210
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=98.00 E-value=2.8e-06 Score=60.73 Aligned_cols=28 Identities=29% Similarity=0.464 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++|+|+||+||||+|+.+++.++.
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~~ 76 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLANA 76 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3567899999999999999999999854
No 211
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=98.00 E-value=5.4e-05 Score=54.04 Aligned_cols=110 Identities=16% Similarity=0.172 Sum_probs=72.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+|-|..||||++..+.|.+.+.-.|+++..+......+. ..+++ ...+..
T Consensus 74 ~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~~~Pt~eE~------~~~yl-------------------wR~~~~ 128 (289)
T 3rhf_A 74 KRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAFKAPTDEEK------SHDFL-------------------WRIEKQ 128 (289)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred CcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEECCCCChhhh------cCCHH-------------------HHHHHh
Confidence 47899999999999999999999999877776666644332221 11111 112233
Q ss_pred HhcCCeEEEEeCCchhHH------------H-------HHHHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATME------------K-------RKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~~------------~-------r~~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+-..|.++|+|-+-+..- . -..+.. ++...|+.++=+++.++.++-.+|-..|..
T Consensus 129 lP~~G~I~IFdRSwY~~vlverV~g~~~~~~~~~~~~~I~~FE~-~L~~~G~~ilKf~LhIskeEQ~kR~~~R~~ 202 (289)
T 3rhf_A 129 VPAAGMVGVFDRSQYEDVLIHRVHGWADAAELERRYAAINDFES-RLTEQGTTIVKVMLNISKDEQKKRLIARLD 202 (289)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHTTSSCHHHHHHHHHHHHHHHH-HHHHTTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCchhhhHhHHHHhcCCCHHHHHHHHHHHHHHHH-HHHhCCCEEEEEEEECCHHHHHHHHHHHhc
Confidence 334578888877653221 0 112333 444568888888889999998888877653
No 212
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.00 E-value=5.1e-06 Score=57.44 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=29.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+++++|+|||||||++.+++..+...+..+.+++.+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e 60 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALE 60 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 46899999999999999999987654445556666554
No 213
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=98.00 E-value=3.9e-06 Score=61.07 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.-|+|+|+||+|||++|+.+++.+
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CceEEEECCCCccHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 214
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=98.00 E-value=1.4e-05 Score=57.76 Aligned_cols=27 Identities=26% Similarity=0.400 Sum_probs=24.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+.++++.|+||+||||+++.+++.++
T Consensus 47 ~~~~~L~~G~~G~GKT~la~~la~~l~ 73 (324)
T 3u61_B 47 IPHIILHSPSPGTGKTTVAKALCHDVN 73 (324)
T ss_dssp CCSEEEECSSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEeeCcCCCCHHHHHHHHHHHhC
Confidence 456889999999999999999999874
No 215
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=97.99 E-value=3.6e-06 Score=56.87 Aligned_cols=26 Identities=35% Similarity=0.353 Sum_probs=22.8
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
.++++|+||+||||+++.+++.+...
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~ 65 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGE 65 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 48999999999999999999887443
No 216
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=97.99 E-value=3e-06 Score=62.67 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=24.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+||||+|+.+++.++.
T Consensus 72 ~~~ill~Gp~GtGKT~la~~la~~l~~ 98 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMAQTLAKHLDI 98 (376)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457999999999999999999998854
No 217
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.99 E-value=5.9e-06 Score=59.47 Aligned_cols=42 Identities=29% Similarity=0.340 Sum_probs=35.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
++.+|.++|++||||||++..|+..+...+.++.++..|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~ 138 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc
Confidence 467889999999999999999999887667777777776544
No 218
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.98 E-value=4.5e-06 Score=56.79 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..++.+.|++||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998763
No 219
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.97 E-value=9.2e-06 Score=56.24 Aligned_cols=37 Identities=24% Similarity=0.202 Sum_probs=31.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+..+++++|+||+||||.+..++.++...+.++.++.
T Consensus 11 ~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 11 IGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3479999999999999999999998877777777773
No 220
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.96 E-value=7.7e-06 Score=55.66 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++++++++|+||||||++|..+...
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 3569999999999999999887544
No 221
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=97.95 E-value=5.8e-05 Score=57.97 Aligned_cols=38 Identities=5% Similarity=-0.066 Sum_probs=32.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d 43 (143)
..++++.|.||+||||++.+++...... +.++.+++.+
T Consensus 242 G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 242 GEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp TCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 4689999999999999999999887655 7778888765
No 222
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=97.94 E-value=7.4e-06 Score=57.27 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
-++++|+|||||||+++.++..+.
T Consensus 51 g~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999998875
No 223
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.93 E-value=1e-05 Score=53.03 Aligned_cols=27 Identities=26% Similarity=0.302 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..++.+.|+.||||||+.+.|+..++
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 346899999999999999999998873
No 224
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=97.92 E-value=7.9e-06 Score=59.93 Aligned_cols=27 Identities=30% Similarity=0.379 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+|||++|+.+++.+..
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999864
No 225
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.92 E-value=1.2e-05 Score=61.09 Aligned_cols=41 Identities=7% Similarity=0.154 Sum_probs=26.3
Q ss_pred CCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcH
Q psy2713 88 DGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDE 129 (143)
Q Consensus 88 ~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~ 129 (143)
....+++|+.........++.+ .+++.+.+++++.--++..
T Consensus 104 d~il~VvD~~~~~~~~d~~l~~-~l~~~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 104 DVIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNT 144 (456)
T ss_dssp SEEEEEEESSSCSCHHHHHHHH-HHTTCCSCEEEEEECC---
T ss_pred CEEEEEEeCCCCCChHHHHHHH-HHHHcCCCEEEEEECccch
Confidence 3556778887644444566777 8887888888776656543
No 226
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=97.91 E-value=9.7e-06 Score=57.00 Aligned_cols=39 Identities=18% Similarity=0.187 Sum_probs=29.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..|+++|+||+|||++|+.+++.+.........+++..
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~ 67 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAA 67 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGG
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCC
Confidence 356889999999999999999988754444445555443
No 227
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=97.91 E-value=8.2e-06 Score=61.99 Aligned_cols=26 Identities=38% Similarity=0.474 Sum_probs=24.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+.-++|.|+||+|||++|+.+++.++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~ 88 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELG 88 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhC
Confidence 46799999999999999999999986
No 228
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.91 E-value=1.1e-05 Score=57.66 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=28.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEeh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSV 42 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~ 42 (143)
..+++++|+|||||||+++.|+..+... +.++.+++.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 4589999999999999999999776433 545555544
No 229
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=97.91 E-value=5.7e-06 Score=60.11 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=24.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..++++|+||+||||+|+.+++.++..
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~~~ 82 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMSAN 82 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTTCC
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 4568999999999999999999887543
No 230
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.90 E-value=1.2e-05 Score=59.24 Aligned_cols=38 Identities=32% Similarity=0.478 Sum_probs=30.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..+|.++|+|||||||+.+.|...+...+.++.++..|
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 57899999999999999999998775555566666554
No 231
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.90 E-value=1.6e-05 Score=54.16 Aligned_cols=37 Identities=19% Similarity=0.182 Sum_probs=27.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEeh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~ 42 (143)
+...|+++|.+||||||+...|...+... .+..++..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~-~~~~~i~~ 65 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNE-VKIGAMLG 65 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTT-SCEEEEEC
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccC-CeEEEEec
Confidence 35689999999999999999999876433 34444443
No 232
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=97.90 E-value=1.1e-05 Score=58.28 Aligned_cols=27 Identities=33% Similarity=0.433 Sum_probs=22.7
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+++++..|.++|.||||||||...|..
T Consensus 6 ~~~~~g~v~ivG~~nvGKSTLin~l~g 32 (308)
T 3iev_A 6 HHMKVGYVAIVGKPNVGKSTLLNNLLG 32 (308)
T ss_dssp -CCEEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCcHHHHHHHHhC
Confidence 345567999999999999999999973
No 233
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.89 E-value=1.5e-05 Score=55.25 Aligned_cols=39 Identities=21% Similarity=0.069 Sum_probs=33.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..|++.|.||+||||++-.++..+...|.++.++..|.
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~ 44 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVET 44 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 467999999999999999999999888888887777764
No 234
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.89 E-value=8.3e-06 Score=55.80 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+++.|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3689999999999999999998754
No 235
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.88 E-value=3e-05 Score=56.41 Aligned_cols=36 Identities=11% Similarity=0.067 Sum_probs=26.9
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC--CCCceeEeh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT--DHKSKVFSV 42 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~--~~~~~~~~~ 42 (143)
-++.+.|+|||||||++.+++...... +-.+..++.
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~ 66 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDS 66 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 378999999999999999998765432 444555544
No 236
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.88 E-value=1.7e-05 Score=53.60 Aligned_cols=37 Identities=24% Similarity=0.203 Sum_probs=32.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+..+++++|++||||||.+..++.++...+.++.++.
T Consensus 7 ~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 7 HGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3579999999999999999999999877788888874
No 237
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.88 E-value=9.9e-06 Score=60.27 Aligned_cols=27 Identities=26% Similarity=0.139 Sum_probs=24.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++.++++.|+|||||||+++.|+..++
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 456899999999999999999998764
No 238
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.87 E-value=0.00018 Score=54.67 Aligned_cols=38 Identities=21% Similarity=0.394 Sum_probs=30.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc-CCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW-TDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~-~~~~~~~~~~d 43 (143)
..++++.|.||+||||++..++..+.. .+.++.+++.+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E 241 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLE 241 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 468999999999999999999987643 46667777654
No 239
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.87 E-value=1.3e-05 Score=56.77 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..+++++|++||||||+.+.|+..+.
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhCC
Confidence 346899999999999999999998764
No 240
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.86 E-value=1.4e-05 Score=58.56 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=32.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..+|.++|+||+||||+...|+..+...+.+..++..|.
T Consensus 55 ~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 55 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 4578999999999999999999988765666666766553
No 241
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=97.86 E-value=8.7e-05 Score=57.07 Aligned_cols=110 Identities=12% Similarity=0.089 Sum_probs=74.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhhhhhhhhcCCCCccccCchhhhhHHHHHHHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYNIRQLSAREAQEDATKW 84 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (143)
.+.+|+|-|.-||||+|..+.|.+.+.-.++++..+......+. ..+++ ...+..
T Consensus 299 ~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~~~Pt~~E~------~~~yl-------------------~R~~~~ 353 (500)
T 3czp_A 299 HSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPIAAPTEEER------AQPYL-------------------WRFWRH 353 (500)
T ss_dssp CEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEECCSCCHHHH------TSCTT-------------------HHHHTT
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEeCCCChhhh------cchHH-------------------HHHHHh
Confidence 46899999999999999999999999888887777655443322 11222 111222
Q ss_pred HhcCCeEEEEeCCchhH------------HHHH-------HHHHHHHhhcCCEEEEEEeecCcHHHHHHhhhhhc
Q psy2713 85 LKNDGEVAIIDGTTATM------------EKRK-------QIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSM 140 (143)
Q Consensus 85 l~~~~~~vi~d~~~~~~------------~~r~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~r~~~r~~ 140 (143)
+-..|.++|+|-+.... ...+ .+.. ++...|+.++-+++.+|.++-.+|...|..
T Consensus 354 lP~~G~i~IfDRswY~~~~v~rv~g~~~~~~~~~~~~~i~~FE~-~L~~~g~~i~Kf~L~is~eeQ~~R~~~R~~ 427 (500)
T 3czp_A 354 IPARRQFTIFDRSWYGRVLVERIEGFCAPADWLRAYGEINDFEE-QLSEYGIIVVKFWLAIDKQTQMERFKEREK 427 (500)
T ss_dssp CCCTTCEEEEESCGGGGGTHHHHHTSSCHHHHHHHHHHHHHHHH-HHHHHTEEEEEEEEECCHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEeCcchhhHHHHHHhcCCCHHHHHHHHHHHHHHHH-HHhhCCCeEEEEEEECCHHHHHHHHHHHhc
Confidence 33458888888765322 1111 1222 344568999999999999999999888754
No 242
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=97.85 E-value=1.3e-05 Score=56.83 Aligned_cols=24 Identities=42% Similarity=0.437 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
-++++|+|||||||+++.|+..+.
T Consensus 75 gvll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcChHHHHHHHHHHHcC
Confidence 489999999999999999998875
No 243
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.85 E-value=1.1e-05 Score=59.18 Aligned_cols=38 Identities=21% Similarity=0.246 Sum_probs=28.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccC---CCCceeEeh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWT---DHKSKVFSV 42 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~---~~~~~~~~~ 42 (143)
.+..++++|+||+||||+++.+++.+... +.....++.
T Consensus 44 ~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~ 84 (386)
T 2qby_A 44 KPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINT 84 (386)
T ss_dssp CCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEEC
Confidence 45689999999999999999999887432 333444444
No 244
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.84 E-value=1.5e-05 Score=58.57 Aligned_cols=26 Identities=19% Similarity=0.335 Sum_probs=23.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.+..++++|+||+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999999887
No 245
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=97.84 E-value=6.4e-06 Score=56.99 Aligned_cols=25 Identities=28% Similarity=0.529 Sum_probs=22.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..+|.+.|++||||||+++.|+..
T Consensus 19 ~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 19 QPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CceEEEEECCCCCCHHHHHHHHHhc
Confidence 4579999999999999999999865
No 246
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.83 E-value=1.7e-05 Score=58.11 Aligned_cols=39 Identities=31% Similarity=0.491 Sum_probs=30.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+..++.++|+|||||||+.+.|...+...+-+..++..|
T Consensus 54 ~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 54 RAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 457899999999999999999998775444555555544
No 247
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.83 E-value=1.3e-05 Score=57.96 Aligned_cols=26 Identities=31% Similarity=0.613 Sum_probs=23.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+..++.|+|++||||||+++.|+..+
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 34689999999999999999999886
No 248
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=97.82 E-value=2.6e-05 Score=58.92 Aligned_cols=41 Identities=7% Similarity=0.145 Sum_probs=26.6
Q ss_pred CeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecCcHH
Q psy2713 89 GEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQDEE 130 (143)
Q Consensus 89 ~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~~~~ 130 (143)
...+++|...........+.+ ++++.+.+++++---++...
T Consensus 85 ~il~vvD~~~~~~~~d~~~~~-~l~~~~~pvilv~NK~D~~~ 125 (436)
T 2hjg_A 85 VIIFMVNGREGVTAADEEVAK-ILYRTKKPVVLAVNKLDNTE 125 (436)
T ss_dssp EEEEEEETTTCSCHHHHHHHH-HHTTCCSCEEEEEECCCC--
T ss_pred EEEEEEeCCCCCCHHHHHHHH-HHHHcCCCEEEEEECccCcc
Confidence 455778987643344456777 78777888887766666543
No 249
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=97.82 E-value=1.3e-05 Score=61.41 Aligned_cols=28 Identities=36% Similarity=0.482 Sum_probs=24.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
|.-|+|+|+||+||||+|+.++..++..
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~ 76 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVP 76 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 4568999999999999999999887543
No 250
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.82 E-value=7.5e-06 Score=59.73 Aligned_cols=24 Identities=29% Similarity=0.342 Sum_probs=22.1
Q ss_pred EEEEccCCCChhHHHHHHHHHHcc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
++|+|+||+||||+++.+++.+..
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~~ 72 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIYG 72 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHHcC
Confidence 899999999999999999998753
No 251
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.81 E-value=1.2e-05 Score=54.25 Aligned_cols=30 Identities=40% Similarity=0.415 Sum_probs=24.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
++.++|++||||||+.+.|+..+...|+..
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~~~Gi~~ 32 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPV 32 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCC
T ss_pred EEEEECCCCChHHHHHHHHHhhcccCCEEE
Confidence 688999999999999999998774333333
No 252
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.80 E-value=2.6e-05 Score=57.34 Aligned_cols=34 Identities=26% Similarity=0.277 Sum_probs=27.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC-CCCceeEe
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFS 41 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~ 41 (143)
.++++|+||+||||+++.+++.+... +.....++
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 89999999999999999999988654 34444444
No 253
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.80 E-value=0.00039 Score=47.00 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|++||||||+...|...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999865
No 254
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=97.79 E-value=8.6e-05 Score=57.01 Aligned_cols=27 Identities=30% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+.-|+|+|+||+|||++|+.++..++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~ 263 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG 263 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC
Confidence 456799999999999999999998864
No 255
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=97.78 E-value=1.2e-05 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.232 Sum_probs=20.0
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+++++|.+||||||+|.+|+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~ 22 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD 22 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS
T ss_pred CEEEECCCCCcHHHHHHHHHhc
Confidence 3789999999999999999865
No 256
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=97.78 E-value=1e-05 Score=60.11 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=24.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
+..|+|+|+||+|||++|+.+++.++..
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~ 175 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNAT 175 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCE
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCc
Confidence 4689999999999999999999987543
No 257
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=97.77 E-value=1.5e-05 Score=60.43 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=23.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.-|+|+|+||+|||++|+.++..+
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~ 191 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEA 191 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHc
Confidence 4689999999999999999999987
No 258
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.77 E-value=1.7e-05 Score=61.15 Aligned_cols=27 Identities=33% Similarity=0.402 Sum_probs=24.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++|+|+||+||||+|+.+++.++.
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~~ 103 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELGY 103 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 468999999999999999999998853
No 259
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.77 E-value=1.4e-05 Score=55.14 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++.++|+|||||||++..++..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 468999999999999999999975
No 260
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.76 E-value=1.9e-05 Score=57.40 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.9
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.++++|+||+||||+++.+++.+.
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998864
No 261
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=97.76 E-value=7.4e-06 Score=59.59 Aligned_cols=28 Identities=11% Similarity=-0.001 Sum_probs=25.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+..++++|+||+|||++++.+++.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567899999999999999999999884
No 262
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=97.76 E-value=1.9e-05 Score=52.19 Aligned_cols=27 Identities=26% Similarity=0.492 Sum_probs=23.5
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+++++..|+++|.+||||||+.+.|..
T Consensus 3 ~~~~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 3 SHMKSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CCCCEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 355667899999999999999999975
No 263
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=97.75 E-value=1.7e-05 Score=56.27 Aligned_cols=26 Identities=23% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
++..|++.||||+|||++|..|+..+
T Consensus 103 ~~n~~~l~GppgtGKt~~a~ala~~~ 128 (267)
T 1u0j_A 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHhhh
Confidence 34689999999999999999999864
No 264
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.75 E-value=1.8e-05 Score=57.77 Aligned_cols=25 Identities=24% Similarity=0.273 Sum_probs=22.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+. ++++|+||+||||+++.++..+.
T Consensus 37 ~~-~ll~Gp~G~GKTtl~~~la~~l~ 61 (354)
T 1sxj_E 37 PH-LLLYGPNGTGKKTRCMALLESIF 61 (354)
T ss_dssp CC-EEEECSTTSSHHHHHHTHHHHHS
T ss_pred Ce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 44 89999999999999999999663
No 265
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=97.74 E-value=1.9e-05 Score=55.24 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
++|.++|.+||||||+|+.|.+.++..
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~ 28 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAV 28 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCe
Confidence 589999999999999999999876543
No 266
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=97.74 E-value=1.6e-05 Score=55.43 Aligned_cols=25 Identities=16% Similarity=0.250 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 31 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 31 GEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999997543
No 267
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.74 E-value=2e-05 Score=61.21 Aligned_cols=28 Identities=32% Similarity=0.483 Sum_probs=24.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+...++|+|+||+||||+|+.|+..++.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 134 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR 134 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 3458999999999999999999998854
No 268
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=97.74 E-value=3.5e-05 Score=56.63 Aligned_cols=41 Identities=20% Similarity=0.157 Sum_probs=36.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.++.++++.|..|+||||+|..|+..+...+.++-+++.|.
T Consensus 24 ~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 24 DGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp CSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 45678999999999999999999999988899999998886
No 269
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=97.72 E-value=1.9e-05 Score=56.81 Aligned_cols=27 Identities=37% Similarity=0.407 Sum_probs=23.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..++++|+||+||||+|+.+++.++.
T Consensus 38 ~~~vll~G~~GtGKT~la~~i~~~~~~ 64 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLAHVIAHELGV 64 (324)
T ss_dssp CCCCEEECCTTCCCHHHHHHHHHHHTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998753
No 270
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=97.71 E-value=3.3e-05 Score=56.17 Aligned_cols=39 Identities=21% Similarity=0.272 Sum_probs=35.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+.++++.|..|+||||+|..|+..+...|.++.+++.|.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 579999999999999999999999888899999988875
No 271
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=97.70 E-value=3e-05 Score=57.55 Aligned_cols=27 Identities=15% Similarity=0.295 Sum_probs=24.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..+++++|++||||||+.+.|+..+.
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 346899999999999999999998764
No 272
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.70 E-value=2.1e-05 Score=59.78 Aligned_cols=26 Identities=38% Similarity=0.526 Sum_probs=23.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..++|.|+||+||||+|+.|++.++.
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 46899999999999999999998754
No 273
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=97.70 E-value=4.9e-05 Score=55.63 Aligned_cols=39 Identities=18% Similarity=0.104 Sum_probs=35.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
++.++++.|..|+||||+|..++..+...|.++.+++.|
T Consensus 15 ~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 15 SLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 467899999999999999999999998889999999888
No 274
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=97.70 E-value=5.2e-05 Score=51.77 Aligned_cols=27 Identities=30% Similarity=0.384 Sum_probs=23.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+...|+++|.+||||||+...+...+.
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456788999999999999999998753
No 275
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=97.70 E-value=1.9e-05 Score=54.52 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997443
No 276
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.69 E-value=5.3e-05 Score=60.93 Aligned_cols=39 Identities=23% Similarity=0.269 Sum_probs=30.1
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.++|+|+||+|||++|+.|++.+...+.+...+++..+.
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~ 561 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYM 561 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcc
Confidence 699999999999999999999885444445555555443
No 277
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.69 E-value=2.5e-05 Score=50.84 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
|++..|++.|.||+||||+.+.|..
T Consensus 1 m~~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 1 MKSYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp CCEEEEEEECSTTSSHHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 3456799999999999999999974
No 278
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.69 E-value=2.4e-05 Score=54.67 Aligned_cols=24 Identities=21% Similarity=0.319 Sum_probs=21.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.++.+.|++||||||+.+.|+-.+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998544
No 279
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.69 E-value=0.0002 Score=61.96 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=32.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..+++++|+||+||||+|.+++......+..+.+++.+.
T Consensus 383 G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vlyis~E~ 421 (1706)
T 3cmw_A 383 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEccC
Confidence 468999999999999999999977665667777776654
No 280
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=97.69 E-value=1.4e-05 Score=57.97 Aligned_cols=26 Identities=23% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
-++|.|+||+|||++|+.+++.++..
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~ 73 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLD 73 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 58999999999999999999987643
No 281
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=97.69 E-value=2.2e-05 Score=52.29 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+|+|.||+||||+|..|.++
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999999875
No 282
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=97.68 E-value=2.2e-05 Score=53.73 Aligned_cols=23 Identities=30% Similarity=0.239 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.++.+.|++||||||+.+.|+-.
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 47899999999999999999865
No 283
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=97.68 E-value=1.4e-05 Score=58.16 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=22.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
-++|+|+||+|||++|+.+++.+.
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~ 70 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLP 70 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSC
T ss_pred eEEEECCCCccHHHHHHHHHHhCc
Confidence 489999999999999999999875
No 284
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.68 E-value=0.00021 Score=61.85 Aligned_cols=39 Identities=15% Similarity=0.186 Sum_probs=32.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..+|++.|+||+||||+|..++......+.++.+++.+.
T Consensus 732 G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 732 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 468999999999999999999987766666777776654
No 285
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=97.68 E-value=4.2e-05 Score=54.92 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=34.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++++|.++|..|+||||+|..|+..+...+.++.++..|.
T Consensus 40 ~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 40 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred CceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3467777799999999999999999988889998888774
No 286
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.67 E-value=2.3e-05 Score=54.64 Aligned_cols=25 Identities=32% Similarity=0.340 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 31 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 31 GALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997554
No 287
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=97.67 E-value=3.2e-05 Score=62.55 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=24.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
|.-|+|.||||+|||.+|+.++..++..
T Consensus 511 ~~gvLl~GPPGtGKT~lAkaiA~e~~~~ 538 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLAKAIANECQAN 538 (806)
T ss_dssp CSCCEEESSTTSSHHHHHHHHHHTTTCE
T ss_pred CceEEEecCCCCCchHHHHHHHHHhCCc
Confidence 4568999999999999999999987654
No 288
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=97.67 E-value=3.7e-05 Score=54.10 Aligned_cols=45 Identities=11% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
+.+++.+.+..+..|+||||+|..|+..+...|.++.++..|...
T Consensus 15 ~~~~~vI~v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD~D~~~ 59 (262)
T 2ph1_A 15 GKIKSRIAVMSGKGGVGKSTVTALLAVHYARQGKKVGILDADFLG 59 (262)
T ss_dssp TTCSCEEEEECSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCSSC
T ss_pred ccCCeEEEEEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCC
Confidence 345556677788899999999999999998888888888877543
No 289
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=97.66 E-value=2.9e-05 Score=55.07 Aligned_cols=26 Identities=35% Similarity=0.367 Sum_probs=22.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+++++|+|||||||++..++..+.
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 35899999999999999999997553
No 290
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=97.66 E-value=1.2e-05 Score=51.60 Aligned_cols=24 Identities=17% Similarity=0.030 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.-|++.|+||+|||++|+.+.+..
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CcEEEECCCCccHHHHHHHHHHhC
Confidence 458899999999999999987553
No 291
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.66 E-value=3.6e-05 Score=56.82 Aligned_cols=27 Identities=22% Similarity=0.272 Sum_probs=23.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
..+++++|++||||||+.+.|...+..
T Consensus 123 ~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 123 RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 358999999999999999999887753
No 292
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=97.66 E-value=5.5e-05 Score=55.16 Aligned_cols=41 Identities=15% Similarity=0.067 Sum_probs=36.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.+.++++.|..|+||||+|..|+..+...|.++.+++.|..
T Consensus 18 ~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~~ 58 (329)
T 2woo_A 18 SLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDPA 58 (329)
T ss_dssp TCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCTT
T ss_pred CCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCCC
Confidence 35788999999999999999999999888999999988753
No 293
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=97.65 E-value=2.9e-05 Score=59.73 Aligned_cols=26 Identities=42% Similarity=0.474 Sum_probs=23.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
|.-++|+|+||+||||+++.|+..++
T Consensus 64 p~GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 64 PKGVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC
Confidence 34599999999999999999998875
No 294
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=97.64 E-value=3.1e-05 Score=59.06 Aligned_cols=27 Identities=30% Similarity=0.370 Sum_probs=23.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+.-++|+|+||+|||++|+.|++.+..
T Consensus 201 ~~~~LL~G~pG~GKT~la~~la~~l~~ 227 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIAEGLAQQIIN 227 (468)
T ss_dssp SCEEEEESCTTTTTHHHHHHHHHHHHS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHHHHh
Confidence 446789999999999999999999743
No 295
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.64 E-value=0.00027 Score=62.06 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=32.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+..++++.|+||+||||+|.+++......+..+.+++.+.
T Consensus 382 ~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~ 421 (2050)
T 3cmu_A 382 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 421 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCC
Confidence 3469999999999999999999987766666777776654
No 296
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=97.64 E-value=2.3e-05 Score=55.86 Aligned_cols=25 Identities=28% Similarity=0.348 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3579999999999999999997543
No 297
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.63 E-value=3e-05 Score=54.19 Aligned_cols=25 Identities=24% Similarity=0.473 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4589999999999999999998554
No 298
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=97.63 E-value=2.7e-05 Score=55.23 Aligned_cols=25 Identities=36% Similarity=0.549 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3579999999999999999997543
No 299
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=97.63 E-value=4e-05 Score=54.83 Aligned_cols=23 Identities=39% Similarity=0.486 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++++|+||+||||+|+.+++.+.
T Consensus 41 ~ll~G~~G~GKt~la~~l~~~l~ 63 (319)
T 2chq_A 41 LLFSGPPGTGKTATAIALARDLF 63 (319)
T ss_dssp EEEESSSSSSHHHHHHHHHHHHH
T ss_pred EEEECcCCcCHHHHHHHHHHHhc
Confidence 89999999999999999999874
No 300
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.63 E-value=7.6e-05 Score=51.26 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=32.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+..+.+++|++||||||.+..++.++...+.++.++.
T Consensus 27 ~G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 27 NGWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp SCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 3478999999999999999999999887788888874
No 301
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=97.63 E-value=0.00021 Score=47.22 Aligned_cols=24 Identities=33% Similarity=0.285 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+||||||+...|...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 23 KGEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp TCEEEEEEBTTSSHHHHHHHHHTS
T ss_pred CeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999998744
No 302
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=97.62 E-value=3.3e-05 Score=55.41 Aligned_cols=24 Identities=38% Similarity=0.434 Sum_probs=22.0
Q ss_pred EEEEEccCCCChhHHHHHHHHHHc
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.++++|+||+||||+|+.+++.+.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999998874
No 303
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.62 E-value=0.00063 Score=59.82 Aligned_cols=40 Identities=15% Similarity=0.176 Sum_probs=34.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++..|+++|+||+||||+|..++......+.++..++.++
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~ 1465 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 1465 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEccc
Confidence 3578999999999999999999987777788888887653
No 304
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.62 E-value=2.9e-05 Score=54.92 Aligned_cols=25 Identities=16% Similarity=0.278 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997544
No 305
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=97.62 E-value=4.6e-05 Score=54.97 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+..|+++|+||+|||++|+.+.+.....+.....+++.
T Consensus 25 ~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~ 62 (304)
T 1ojl_A 25 DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCA 62 (304)
T ss_dssp TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECS
T ss_pred CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCC
Confidence 45689999999999999999998765444444445443
No 306
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=97.61 E-value=3.7e-05 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.333 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++.+.|++||||||+.+.|+-.
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999854
No 307
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=97.61 E-value=8.5e-05 Score=55.97 Aligned_cols=28 Identities=14% Similarity=0.071 Sum_probs=24.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
+..+++++|++||||||+.+.|...+..
T Consensus 166 ~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred cCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 3468999999999999999999988754
No 308
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=97.61 E-value=3.2e-05 Score=54.78 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 3589999999999999999997543
No 309
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=97.60 E-value=3.1e-05 Score=54.30 Aligned_cols=25 Identities=28% Similarity=0.549 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999997554
No 310
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.60 E-value=4.2e-05 Score=54.26 Aligned_cols=24 Identities=29% Similarity=0.355 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++.+.|++||||||+.+.|+-.
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 358999999999999999999854
No 311
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=97.60 E-value=4.6e-05 Score=48.87 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.-|+++|.+||||||+.+.+...
T Consensus 2 ~~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 2 TEYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECCCCCCHHHHHHHHHhC
Confidence 3456999999999999999999754
No 312
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.60 E-value=2.4e-05 Score=63.45 Aligned_cols=28 Identities=29% Similarity=0.396 Sum_probs=24.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..|+|+|+|||||||+|+.|+..++.
T Consensus 237 ~~~~vLL~Gp~GtGKTtLarala~~l~~ 264 (806)
T 1ypw_A 237 PPRGILLYGPPGTGKTLIARAVANETGA 264 (806)
T ss_dssp CCCEEEECSCTTSSHHHHHHHHHHTTTC
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCC
Confidence 4567999999999999999999987653
No 313
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=97.59 E-value=3.5e-05 Score=54.78 Aligned_cols=25 Identities=36% Similarity=0.405 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997554
No 314
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.59 E-value=3.5e-05 Score=54.42 Aligned_cols=25 Identities=36% Similarity=0.519 Sum_probs=21.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+-.+
T Consensus 46 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 46 GTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3589999999999999999998554
No 315
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.59 E-value=3.4e-05 Score=53.84 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997543
No 316
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.58 E-value=2.7e-05 Score=57.00 Aligned_cols=30 Identities=17% Similarity=0.128 Sum_probs=26.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
++..+|.|-|+-||||||+++.|++++...
T Consensus 5 ~~~~fI~~EG~dGaGKTT~~~~La~~L~~~ 34 (334)
T 1p6x_A 5 VTIVRIYLDGVYGIGKSTTGRVMASAASGG 34 (334)
T ss_dssp EEEEEEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccC
Confidence 345799999999999999999999998763
No 317
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=97.58 E-value=4.5e-05 Score=55.36 Aligned_cols=24 Identities=29% Similarity=0.338 Sum_probs=21.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.+++++|++||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 589999999999999999998653
No 318
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=97.58 E-value=3.5e-05 Score=54.30 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999997543
No 319
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=97.58 E-value=5.1e-05 Score=48.75 Aligned_cols=26 Identities=19% Similarity=0.258 Sum_probs=22.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
|++.-|+++|.+||||||+...+...
T Consensus 1 m~~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 1 MREYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHcC
Confidence 34567999999999999999998753
No 320
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=97.58 E-value=3.6e-05 Score=53.33 Aligned_cols=24 Identities=29% Similarity=0.333 Sum_probs=21.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.++.++|++||||||+.+.|+-.+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 579999999999999999998554
No 321
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=97.58 E-value=7.6e-05 Score=53.78 Aligned_cols=23 Identities=39% Similarity=0.507 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
...|+++|.||+|||||.+.|..
T Consensus 7 ~g~V~ivG~~nvGKSTLln~l~g 29 (301)
T 1wf3_A 7 SGFVAIVGKPNVGKSTLLNNLLG 29 (301)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999974
No 322
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.57 E-value=5.7e-05 Score=54.08 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.6
Q ss_pred EEEEccCCCChhHHHHHHHHHHc
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
++++|+||+||||+|+.+++.+.
T Consensus 45 ~ll~G~~G~GKt~la~~l~~~l~ 67 (323)
T 1sxj_B 45 MIISGMPGIGKTTSVHCLAHELL 67 (323)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhc
Confidence 89999999999999999998874
No 323
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=97.57 E-value=3.8e-05 Score=54.17 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999997543
No 324
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=97.57 E-value=7.4e-05 Score=49.60 Aligned_cols=28 Identities=18% Similarity=0.328 Sum_probs=23.6
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
...++.-|+++|.+|||||||...|...
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3445677999999999999999999864
No 325
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=97.57 E-value=3.1e-05 Score=53.20 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3578999999999999999997543
No 326
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=97.56 E-value=9.9e-05 Score=50.97 Aligned_cols=42 Identities=12% Similarity=0.044 Sum_probs=34.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccC-CCCceeEehhhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWT-DHKSKVFSVSAY 45 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~-~~~~~~~~~d~~ 45 (143)
+++.+.+..+..|+||||+|..|+..+... +.++.++..|..
T Consensus 3 ~~~vI~v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD~D~~ 45 (245)
T 3ea0_A 3 AKRVFGFVSAKGGDGGSCIAANFAFALSQEPDIHVLAVDISLP 45 (245)
T ss_dssp CCEEEEEEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEECCTT
T ss_pred CCeEEEEECCCCCcchHHHHHHHHHHHHhCcCCCEEEEECCCC
Confidence 445566667789999999999999999887 999999988754
No 327
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=97.56 E-value=9.4e-05 Score=53.25 Aligned_cols=40 Identities=20% Similarity=0.362 Sum_probs=33.4
Q ss_pred CCeEEEEEcc-CCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGL-PARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~-pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+|+++|. +|+||||+|..|+..+...+.++.++..|.
T Consensus 103 ~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~ 143 (299)
T 3cio_A 103 ENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFIDADL 143 (299)
T ss_dssp SCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3467777775 899999999999999987888888887775
No 328
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=97.56 E-value=4e-05 Score=50.33 Aligned_cols=28 Identities=21% Similarity=0.345 Sum_probs=23.1
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
|.+.++.-|+++|.+|+|||||...+..
T Consensus 1 m~~~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 1 MPQSKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp -CCEEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCceEEEEEECcCCCCHHHHHHHHHc
Confidence 3445567899999999999999999984
No 329
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.56 E-value=6.6e-05 Score=58.75 Aligned_cols=41 Identities=17% Similarity=0.148 Sum_probs=36.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
..+.+++++|.+|+||||+|..|+..+...|.++-+++.|.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 34578999999999999999999999988899999998884
No 330
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=97.56 E-value=3.9e-05 Score=56.62 Aligned_cols=26 Identities=35% Similarity=0.517 Sum_probs=22.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...+.++|++||||||+++.|+..+.
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 35789999999999999999998764
No 331
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=97.56 E-value=4.1e-05 Score=54.22 Aligned_cols=25 Identities=16% Similarity=0.268 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999997543
No 332
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=9.4e-05 Score=54.23 Aligned_cols=38 Identities=21% Similarity=0.158 Sum_probs=28.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHcc------CCCCceeEehh
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTW------TDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~------~~~~~~~~~~d 43 (143)
..++.++|+|||||||++..++..... .+..+.+++.+
T Consensus 122 G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E 165 (343)
T 1v5w_A 122 MAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTE 165 (343)
T ss_dssp SEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECC
Confidence 468999999999999999999976322 23445555554
No 333
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=97.54 E-value=6.8e-05 Score=51.58 Aligned_cols=40 Identities=20% Similarity=0.150 Sum_probs=33.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus 2 ~~~i~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (237)
T 1g3q_A 2 GRIISIVSGKGGTGKTTVTANLSVALGDRGRKVLAVDGDL 41 (237)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred ceEEEEecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeCCC
Confidence 3455566778899999999999999987888888888775
No 334
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=97.54 E-value=4.3e-05 Score=53.66 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999997544
No 335
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=97.53 E-value=3.2e-05 Score=57.11 Aligned_cols=26 Identities=27% Similarity=0.387 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..+++++|++||||||+.+.|...+.
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35899999999999999999987654
No 336
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=97.53 E-value=0.00024 Score=46.92 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.-|+++|.+|+|||||.+.+...+
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 569999999999999998776554
No 337
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=5.1e-05 Score=55.81 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|+|||||||++..++..+
T Consensus 131 G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 131 QAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999775
No 338
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=97.53 E-value=8.6e-05 Score=54.65 Aligned_cols=39 Identities=15% Similarity=0.114 Sum_probs=35.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d 43 (143)
...++++.|..|+||||+|..|+..+. ..+.++.+++.|
T Consensus 17 ~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~D 57 (348)
T 3io3_A 17 SLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLISTD 57 (348)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEECC
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 457999999999999999999999998 889999999887
No 339
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=97.53 E-value=0.00011 Score=54.21 Aligned_cols=40 Identities=15% Similarity=0.113 Sum_probs=36.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc--cCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT--WTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~--~~~~~~~~~~~d~ 44 (143)
.+.++++.|..|+||||+|..|+..+. ..|.++.+++.|.
T Consensus 17 ~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~D~ 58 (354)
T 2woj_A 17 THKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLISTDP 58 (354)
T ss_dssp SCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEECCS
T ss_pred CcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEECCC
Confidence 357899999999999999999999998 8899999998885
No 340
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=97.53 E-value=3.6e-05 Score=62.44 Aligned_cols=30 Identities=27% Similarity=0.215 Sum_probs=25.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
+..++|.|+||+||||+|+.|+..++...+
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 456899999999999999999999865544
No 341
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=97.52 E-value=5.8e-05 Score=52.17 Aligned_cols=36 Identities=22% Similarity=0.201 Sum_probs=32.0
Q ss_pred EEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
|.+.|..|+||||+|..|+..+...|.++-++..|.
T Consensus 3 I~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~ 38 (254)
T 3kjh_A 3 LAVAGKGGVGKTTVAAGLIKIMASDYDKIYAVDGDP 38 (254)
T ss_dssp EEEECSSSHHHHHHHHHHHHHHTTTCSCEEEEEECT
T ss_pred EEEecCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 455999999999999999999988899998887775
No 342
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.52 E-value=4.7e-05 Score=54.39 Aligned_cols=25 Identities=36% Similarity=0.339 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3578999999999999999998544
No 343
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=97.52 E-value=3.5e-05 Score=57.17 Aligned_cols=31 Identities=29% Similarity=0.161 Sum_probs=23.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
++..+|.|-|+-||||||+++.|++++...+
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~g 77 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDD 77 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 3456899999999999999999999886544
No 344
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=97.52 E-value=8.8e-05 Score=51.91 Aligned_cols=40 Identities=18% Similarity=0.233 Sum_probs=33.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus 2 ~~~I~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (263)
T 1hyq_A 2 VRTITVASGKGGTGKTTITANLGVALAQLGHDVTIVDADI 41 (263)
T ss_dssp CEEEEEEESSSCSCHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCCHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 3456666889999999999999999987788888887774
No 345
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=97.51 E-value=4.8e-05 Score=53.56 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3579999999999999999998544
No 346
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=97.50 E-value=7.3e-05 Score=49.43 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+.+.+++|++||||||+...|.-.+.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHc
Confidence 34889999999999999999987653
No 347
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.50 E-value=6.9e-05 Score=53.22 Aligned_cols=24 Identities=25% Similarity=0.393 Sum_probs=21.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..+.++|++||||||+.+.|....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 358899999999999999999665
No 348
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=97.50 E-value=6.5e-05 Score=55.49 Aligned_cols=25 Identities=24% Similarity=0.368 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3589999999999999999998543
No 349
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=97.50 E-value=0.00011 Score=51.51 Aligned_cols=38 Identities=21% Similarity=0.182 Sum_probs=32.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++|.+.|..|+||||+|..|+..+...|.++.++..|.
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 35566899999999999999999988899998887774
No 350
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=97.50 E-value=0.00011 Score=52.38 Aligned_cols=38 Identities=18% Similarity=0.176 Sum_probs=32.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++|.+.|..|+||||+|..|+..+...+.++.++..|.
T Consensus 3 kvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~ 40 (289)
T 2afh_E 3 RQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDP 40 (289)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECS
T ss_pred eEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 45666899999999999999999987888888887774
No 351
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=97.49 E-value=8e-05 Score=51.88 Aligned_cols=40 Identities=20% Similarity=0.243 Sum_probs=33.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus 2 ~~vi~v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~D~ 41 (260)
T 3q9l_A 2 ARIIVVTSGKGGVGKTTSSAAIATGLAQKGKKTVVIDFAI 41 (260)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCcEEEEECCC
Confidence 4456666788899999999999999988888888887775
No 352
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=97.49 E-value=0.00013 Score=51.74 Aligned_cols=39 Identities=15% Similarity=0.215 Sum_probs=32.6
Q ss_pred CeEEEEEc-cCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 6 PLVVALVG-LPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 6 ~~~i~l~G-~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
+.+|+++| .+|+||||+|..|+..+...+.++.++..|.
T Consensus 82 ~kvI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID~D~ 121 (271)
T 3bfv_A 82 VQSIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVDGDM 121 (271)
T ss_dssp CCEEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CeEEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEeCCC
Confidence 45677765 5899999999999999988888888888774
No 353
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=97.49 E-value=7.3e-05 Score=48.06 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.-|+++|.+||||||+.+.+...
T Consensus 3 ~~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 3 ALHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHhC
Confidence 4567999999999999999999753
No 354
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=97.49 E-value=6.4e-05 Score=49.75 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=22.2
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+++.-|+++|.+||||||+...|...
T Consensus 19 ~~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 19 MTEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceeEEEEECcCCCCHHHHHHHHHcC
Confidence 34467999999999999999999854
No 355
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=97.49 E-value=0.00029 Score=48.42 Aligned_cols=37 Identities=19% Similarity=0.184 Sum_probs=28.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
+..+.+++|++||||||.+-..+.++...+.++.++.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 3579999999999999966666666666677777763
No 356
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=97.49 E-value=0.00015 Score=50.29 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=32.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
.+..+.+++|++||||||-+..++.++...+.++.++.
T Consensus 17 ~~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 17 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp -CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34579999999999999999999988877788887774
No 357
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=97.48 E-value=7.5e-05 Score=48.10 Aligned_cols=25 Identities=16% Similarity=0.248 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.-|+++|.+||||||+.+.+...
T Consensus 2 ~~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 2 REYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceeEEEEECCCCCCHHHHHHHHHcC
Confidence 4567999999999999999999753
No 358
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=97.48 E-value=9.2e-05 Score=49.14 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
...-|+++|.+||||||+...|..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999974
No 359
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=97.48 E-value=7.2e-05 Score=49.96 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..|+++|++||||||+.+.+...
T Consensus 30 ~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 30 FKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 47899999999999999999864
No 360
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=97.48 E-value=6.4e-05 Score=49.18 Aligned_cols=29 Identities=24% Similarity=0.417 Sum_probs=23.9
Q ss_pred CCCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 1 LRQFTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 1 ~~~~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
|..++..-|++.|.+|+|||||...+...
T Consensus 2 m~~~~~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 2 MRSIPELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp CCCCCEEEEEEECCGGGCHHHHHHHHHHS
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34455677999999999999999999853
No 361
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=97.48 E-value=7.9e-05 Score=50.62 Aligned_cols=24 Identities=21% Similarity=0.260 Sum_probs=20.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|||||||...|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998643
No 362
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.47 E-value=0.0001 Score=57.66 Aligned_cols=35 Identities=17% Similarity=0.210 Sum_probs=29.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeE
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~ 40 (143)
..++++.|+||+||||++..+...+...+.++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 45899999999999999999998887666655544
No 363
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.47 E-value=4.9e-05 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~ 27 (143)
+...|+++|.+||||||+.+.|.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~ 47 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLT 47 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 45689999999999999999886
No 364
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=97.47 E-value=9e-05 Score=59.61 Aligned_cols=27 Identities=33% Similarity=0.445 Sum_probs=23.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+.-++|+|+||+|||++|+.|++.+.
T Consensus 200 ~~~~vLL~G~pGtGKT~la~~la~~l~ 226 (758)
T 3pxi_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQII 226 (758)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHH
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHh
Confidence 345689999999999999999999973
No 365
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=97.46 E-value=5.6e-05 Score=53.52 Aligned_cols=23 Identities=30% Similarity=0.374 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.++.+.|++||||||+.+.|+-.
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl 53 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGL 53 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999754
No 366
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=97.46 E-value=3.3e-05 Score=59.44 Aligned_cols=25 Identities=28% Similarity=0.392 Sum_probs=22.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.-|+|+|+||+|||++|+.|++.+.
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBS
T ss_pred CeeEeecCchHHHHHHHHHHHHHHh
Confidence 4689999999999999999998764
No 367
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=97.45 E-value=9.6e-05 Score=48.37 Aligned_cols=28 Identities=25% Similarity=0.126 Sum_probs=21.8
Q ss_pred CCCCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 2 RQFTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 2 ~~~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++..-|+++|.+|+||||+...+...
T Consensus 4 ~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 4 SASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3445677999999999999999998743
No 368
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=97.44 E-value=7.3e-05 Score=48.70 Aligned_cols=24 Identities=21% Similarity=0.329 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++.-|+++|.+||||||+...+..
T Consensus 13 ~~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 13 RKFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHc
Confidence 346799999999999999999974
No 369
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=97.44 E-value=8.4e-05 Score=55.31 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCC
Confidence 3589999999999999999998543
No 370
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=97.44 E-value=8.7e-05 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.271 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCC
Confidence 3589999999999999999998543
No 371
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=97.44 E-value=8.8e-05 Score=54.93 Aligned_cols=25 Identities=16% Similarity=0.267 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3579999999999999999998543
No 372
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=97.44 E-value=7.6e-05 Score=55.08 Aligned_cols=24 Identities=25% Similarity=0.362 Sum_probs=21.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.++.+.|++||||||+.+.|+-.+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 579999999999999999998543
No 373
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.43 E-value=0.00011 Score=49.01 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=21.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.+..-|+++|.+|+|||||...+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567999999999999999999854
No 374
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=97.43 E-value=0.0001 Score=51.74 Aligned_cols=38 Identities=16% Similarity=0.167 Sum_probs=32.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.+.+..+..|+||||+|..|+..+. .+.++.++..|..
T Consensus 29 vI~v~s~kGGvGKTT~a~~LA~~la-~g~~VlliD~D~~ 66 (267)
T 3k9g_A 29 IITIASIKGGVGKSTSAIILATLLS-KNNKVLLIDMDTQ 66 (267)
T ss_dssp EEEECCSSSSSCHHHHHHHHHHHHT-TTSCEEEEEECTT
T ss_pred EEEEEeCCCCchHHHHHHHHHHHHH-CCCCEEEEECCCC
Confidence 4455578899999999999999998 8999999988753
No 375
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=97.43 E-value=0.0001 Score=48.01 Aligned_cols=25 Identities=28% Similarity=0.413 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+++.-|+++|.+|||||||...+..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 4456799999999999999999974
No 376
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=97.43 E-value=7.7e-05 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..|+++|++||||||+.+.|...
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 56899999999999999999864
No 377
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=97.43 E-value=9.1e-05 Score=54.80 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3589999999999999999998543
No 378
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=97.43 E-value=0.0005 Score=49.62 Aligned_cols=25 Identities=12% Similarity=0.193 Sum_probs=22.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
...++|+|+||+||||+|+.+++..
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 5689999999999999999999864
No 379
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=97.42 E-value=0.00012 Score=47.77 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|||||||.+.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999999864
No 380
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.42 E-value=0.0001 Score=48.35 Aligned_cols=25 Identities=28% Similarity=0.440 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..-|+++|.||+|||||.+.|...
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3467999999999999999999753
No 381
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.41 E-value=8.2e-05 Score=53.40 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 64 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 64 GQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3589999999999999999997543
No 382
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=97.41 E-value=4.6e-05 Score=55.16 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+..+
T Consensus 80 Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 80 GQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCEEEEECCCCchHHHHHHHHHcCC
Confidence 3589999999999999999997654
No 383
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=97.40 E-value=0.0001 Score=54.71 Aligned_cols=25 Identities=20% Similarity=0.208 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCChHHHHHHHHHcCC
Confidence 3588999999999999999998543
No 384
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=97.40 E-value=0.00013 Score=47.60 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++..|+++|.+||||||+...+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 456799999999999999999974
No 385
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=97.40 E-value=4.9e-05 Score=55.57 Aligned_cols=30 Identities=30% Similarity=0.209 Sum_probs=23.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCC
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTD 34 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~ 34 (143)
...+|.|-|+-||||||+++.|++++...+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 357899999999999999999999886544
No 386
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=97.40 E-value=0.00013 Score=48.42 Aligned_cols=25 Identities=24% Similarity=0.236 Sum_probs=21.7
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
...-|+++|.+||||||+...|...
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999999754
No 387
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=97.40 E-value=0.0015 Score=48.83 Aligned_cols=31 Identities=19% Similarity=0.356 Sum_probs=25.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~ 37 (143)
.-+.+.|+||+||||+++.|++.+...+-+.
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v 205 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSIAYNHPDC 205 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHHHHHCTTS
T ss_pred cEEEEecCCCCChhHHHHHHHHHHhhcCCCe
Confidence 4688999999999999999998775544333
No 388
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=97.39 E-value=0.00011 Score=47.40 Aligned_cols=25 Identities=20% Similarity=0.344 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
...-|+++|.+||||||+.+.|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3456899999999999999999854
No 389
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=97.39 E-value=0.0001 Score=54.59 Aligned_cols=27 Identities=22% Similarity=0.284 Sum_probs=23.6
Q ss_pred CCeEEEE--EccCCCChhHHHHHHHHHHc
Q psy2713 5 TPLVVAL--VGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 5 ~~~~i~l--~G~pGsGKSTla~~l~~~l~ 31 (143)
.+..+++ +|+||+||||+++.+++.+.
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~ 77 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVS 77 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHH
Confidence 4568888 99999999999999998764
No 390
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=97.39 E-value=9.3e-05 Score=54.93 Aligned_cols=25 Identities=20% Similarity=0.194 Sum_probs=21.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 29 GEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCcHHHHHHHHHHcCC
Confidence 3578999999999999999998543
No 391
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.38 E-value=0.00011 Score=60.00 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=27.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
..++|+|+||+|||++|+.|++.+...+.+...+++.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~ 625 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMT 625 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEech
Confidence 4799999999999999999999884433333344443
No 392
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=97.38 E-value=0.00012 Score=47.54 Aligned_cols=24 Identities=38% Similarity=0.443 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.+.-|+++|.||+|||||.+.+..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 346799999999999999999873
No 393
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=97.38 E-value=0.00014 Score=48.02 Aligned_cols=25 Identities=32% Similarity=0.449 Sum_probs=21.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.+..-|+++|.+|+||||+.+.+..
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~ 38 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLAS 38 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhc
Confidence 4457899999999999999999863
No 394
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=97.38 E-value=4.9e-05 Score=55.50 Aligned_cols=25 Identities=20% Similarity=0.331 Sum_probs=22.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+++++|++||||||+.+.|+..+.
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 5799999999999999999987653
No 395
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.38 E-value=0.00011 Score=58.98 Aligned_cols=28 Identities=29% Similarity=0.238 Sum_probs=24.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHcc
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTW 32 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~ 32 (143)
.+..++++|+||+||||+++.+++.+..
T Consensus 206 ~~~~vlL~G~~GtGKT~la~~la~~l~~ 233 (758)
T 1r6b_X 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQ 233 (758)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEcCCCCCHHHHHHHHHHHHHh
Confidence 4557899999999999999999998754
No 396
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.37 E-value=0.00011 Score=47.33 Aligned_cols=24 Identities=21% Similarity=0.378 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+||||||+...+...
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 3 SIKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999754
No 397
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=97.37 E-value=0.00011 Score=57.74 Aligned_cols=27 Identities=30% Similarity=0.492 Sum_probs=23.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccC
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWT 33 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~ 33 (143)
..++|.|+||+||||+|+.|+..+...
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~~ 87 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPTE 87 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCCS
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCcc
Confidence 478999999999999999999987543
No 398
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=97.37 E-value=0.00019 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.459 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++.-|+++|.+||||||+...+..
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 356799999999999999999974
No 399
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=97.36 E-value=0.0001 Score=48.31 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=21.4
Q ss_pred CCCeEEEEEccCCCChhHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~ 27 (143)
.++.-|+++|.+||||||+...+.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 456789999999999999998886
No 400
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=97.36 E-value=0.00012 Score=54.65 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 3589999999999999999998543
No 401
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=97.36 E-value=0.00013 Score=51.45 Aligned_cols=25 Identities=40% Similarity=0.478 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+...|+++|.|||||||+.+.|...
T Consensus 2 ~~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 2 VLKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999743
No 402
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=97.36 E-value=9.1e-05 Score=51.86 Aligned_cols=43 Identities=21% Similarity=0.188 Sum_probs=33.2
Q ss_pred CCCCeEEEE-EccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 3 QFTPLVVAL-VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 3 ~~~~~~i~l-~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
+.+..+|.+ .+..|+||||+|..|+..+...+.++.++..|..
T Consensus 3 ~~~~~vI~v~s~kGGvGKTt~a~~LA~~la~~g~~VlliD~D~~ 46 (257)
T 1wcv_1 3 RAKVRRIALANQKGGVGKTTTAINLAAYLARLGKRVLLVDLDPQ 46 (257)
T ss_dssp --CCCEEEECCSSCCHHHHHHHHHHHHHHHHTTCCEEEEECCTT
T ss_pred CCCCEEEEEEeCCCCchHHHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 334445555 5788999999999999999878899999888753
No 403
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=97.36 E-value=0.0002 Score=51.92 Aligned_cols=39 Identities=18% Similarity=0.181 Sum_probs=35.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+.++|.++|-=|+||||++-.|+..|...|.++-++.+|
T Consensus 47 ~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~D 85 (314)
T 3fwy_A 47 GAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCD 85 (314)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEES
T ss_pred CceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 457999999999999999999999998889999999888
No 404
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=97.35 E-value=0.00013 Score=47.53 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+||||||+...+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998754
No 405
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=97.35 E-value=0.00016 Score=47.91 Aligned_cols=26 Identities=31% Similarity=0.346 Sum_probs=21.7
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++..-|+++|.+|||||||...+...
T Consensus 18 ~~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 18 GPELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CCEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34467999999999999999888754
No 406
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=97.35 E-value=0.00013 Score=48.84 Aligned_cols=24 Identities=33% Similarity=0.389 Sum_probs=21.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|||||||...|...
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEEECCCCcCHHHHHHHHHhC
Confidence 456999999999999999999854
No 407
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=97.35 E-value=6.7e-05 Score=55.04 Aligned_cols=31 Identities=26% Similarity=0.219 Sum_probs=26.7
Q ss_pred CCCeEEEEEccCCCChhHHH-HHHHHHHccCC
Q psy2713 4 FTPLVVALVGLPARGKTVLA-HKLSRYLTWTD 34 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla-~~l~~~l~~~~ 34 (143)
++..+|+|-|+-||||||++ +.|++.+...+
T Consensus 10 ~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 10 MGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp EEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred CCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 34579999999999999999 99999887554
No 408
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.34 E-value=0.00012 Score=52.95 Aligned_cols=24 Identities=25% Similarity=0.322 Sum_probs=22.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..+++++|+|||||||+|..++..
T Consensus 98 g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 98 QSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999999975
No 409
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.34 E-value=0.00062 Score=51.41 Aligned_cols=24 Identities=33% Similarity=0.498 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.||||||||.+.|...
T Consensus 180 ~~kvaivG~~gvGKSTLln~l~g~ 203 (439)
T 1mky_A 180 AIKVAIVGRPNVGKSTLFNAILNK 203 (439)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CceEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999743
No 410
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.34 E-value=0.00019 Score=54.48 Aligned_cols=28 Identities=25% Similarity=0.244 Sum_probs=25.2
Q ss_pred EEEEEccCCCChhHHHHHHHHHHccCCC
Q psy2713 8 VVALVGLPARGKTVLAHKLSRYLTWTDH 35 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~l~~~~~ 35 (143)
.+++.|+|||||||++..+++.+...+.
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l~~~~~ 74 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEALISTGE 74 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhcCC
Confidence 8999999999999999999998866555
No 411
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=97.33 E-value=0.00011 Score=48.62 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.7
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.-|+++|.||||||||.+.+..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4589999999999999999974
No 412
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=97.33 E-value=7.8e-05 Score=54.86 Aligned_cols=25 Identities=16% Similarity=0.307 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCccHHHHHHHHHcCC
Confidence 3589999999999999999998443
No 413
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=97.33 E-value=7.4e-05 Score=57.66 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
...++++|++||||||+.+.|...+.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999987653
No 414
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=97.33 E-value=0.00027 Score=56.76 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=23.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
..++|+|+||+|||++|+.+++.++
T Consensus 489 ~~~ll~G~~GtGKT~la~~la~~l~ 513 (758)
T 1r6b_X 489 GSFLFAGPTGVGKTEVTVQLSKALG 513 (758)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhc
Confidence 3699999999999999999999984
No 415
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=97.33 E-value=0.00014 Score=47.68 Aligned_cols=25 Identities=24% Similarity=0.222 Sum_probs=21.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..-|+++|.+|||||||.+.|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3457999999999999999999853
No 416
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=97.32 E-value=0.00011 Score=47.37 Aligned_cols=24 Identities=25% Similarity=0.429 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++.-|+++|.+|+||||+...+..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 456799999999999999999975
No 417
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=97.30 E-value=0.00028 Score=47.95 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=31.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.+.+..+..|+||||+|..|+..+...| ++.++..|..
T Consensus 2 vI~v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q 39 (209)
T 3cwq_A 2 IITVASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPN 39 (209)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTT
T ss_pred EEEEEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCC
Confidence 3456678999999999999999998888 8888877743
No 418
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=97.30 E-value=0.00014 Score=47.34 Aligned_cols=24 Identities=25% Similarity=0.290 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+||||||+...+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456999999999999999999743
No 419
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=97.30 E-value=0.00013 Score=47.02 Aligned_cols=21 Identities=38% Similarity=0.580 Sum_probs=18.8
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.-|+++|.||+||||+.+.+.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 458999999999999999885
No 420
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=97.30 E-value=0.00017 Score=52.08 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=22.8
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.++++.|++|+||||+++.+++.+.
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~ 55 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELN 55 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcC
Confidence 3899999999999999999998875
No 421
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=97.30 E-value=0.00014 Score=46.95 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=18.9
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.-|+++|.+||||||+...+.
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999986
No 422
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=97.29 E-value=0.00021 Score=48.15 Aligned_cols=26 Identities=23% Similarity=0.092 Sum_probs=21.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+...-|+++|.+|+|||||...+...
T Consensus 7 ~~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 7 SKFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34467999999999999999999753
No 423
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=97.29 E-value=0.00016 Score=46.63 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
..-|+++|.+||||||+.+.+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 45689999999999999999974
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=97.29 E-value=0.00016 Score=47.27 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=20.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+||||||+...+...
T Consensus 12 ~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 12 NAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999753
No 425
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=97.29 E-value=0.00016 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.367 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+.-|+++|.+||||||+...+..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35689999999999999999974
No 426
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.29 E-value=0.00016 Score=52.05 Aligned_cols=24 Identities=21% Similarity=0.322 Sum_probs=21.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|. .+
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hh
Confidence 3578999999999999999998 54
No 427
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=97.29 E-value=0.00016 Score=47.56 Aligned_cols=25 Identities=28% Similarity=0.377 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.-|+++|.+||||||+...|...
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cEEEEEEECCCCCCHHHHHHHHHhC
Confidence 3467999999999999999999854
No 428
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=97.29 E-value=0.0002 Score=47.02 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+||||||+...+...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999854
No 429
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.29 E-value=0.00015 Score=53.62 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
.++.++|+|||||||+.+.|.-.+
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 578999999999999999998443
No 430
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=97.28 E-value=0.00018 Score=48.03 Aligned_cols=24 Identities=25% Similarity=0.223 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|||||||...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998753
No 431
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=97.28 E-value=0.00017 Score=46.57 Aligned_cols=24 Identities=29% Similarity=0.362 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+||||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999854
No 432
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.28 E-value=0.00027 Score=54.62 Aligned_cols=36 Identities=17% Similarity=0.327 Sum_probs=27.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
..++++.|+|||||||+++.++..+...+-++..+.
T Consensus 281 G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~ 316 (525)
T 1tf7_A 281 DSIILATGATGTGKTLLVSRFVENACANKERAILFA 316 (525)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEE
Confidence 358999999999999999999976654444444443
No 433
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=97.27 E-value=0.00016 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+||||||+.+.+...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 456999999999999999999754
No 434
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=97.27 E-value=0.00024 Score=47.35 Aligned_cols=24 Identities=38% Similarity=0.504 Sum_probs=21.0
Q ss_pred CCCeEEEEEccCCCChhHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~ 27 (143)
.+..-|+++|.+||||||+...+.
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~ 50 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLK 50 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHC
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 345679999999999999999885
No 435
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=97.27 E-value=0.00017 Score=51.40 Aligned_cols=38 Identities=21% Similarity=0.227 Sum_probs=32.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
.+.+..+..|+||||+|..|+..+...+.++.++..|.
T Consensus 6 vI~v~s~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 43 (286)
T 2xj4_A 6 VIVVGNEKGGAGKSTIAVHLVTALLYGGAKVAVIDLDL 43 (286)
T ss_dssp EEEECCSSSCTTHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 44555678899999999999999988888898888876
No 436
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=97.26 E-value=0.00019 Score=47.55 Aligned_cols=24 Identities=25% Similarity=0.364 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|+|||||...+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 357999999999999999998754
No 437
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.26 E-value=0.00049 Score=51.99 Aligned_cols=21 Identities=43% Similarity=0.654 Sum_probs=19.2
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~ 28 (143)
.|+++|.|++|||||...|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~ 23 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVK 23 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999973
No 438
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.26 E-value=0.00017 Score=49.81 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+.-|+++|.+|+||||+.+.|..
T Consensus 29 ~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 29 QLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHcC
Confidence 45799999999999999999974
No 439
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=97.26 E-value=0.00013 Score=55.62 Aligned_cols=25 Identities=36% Similarity=0.449 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+++.|+..+
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3578999999999999999998654
No 440
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.26 E-value=0.00016 Score=51.97 Aligned_cols=25 Identities=36% Similarity=0.384 Sum_probs=21.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.+...|.++|.||+|||||.+.|..
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHC
Confidence 3456899999999999999999974
No 441
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=97.25 E-value=0.00022 Score=47.63 Aligned_cols=25 Identities=24% Similarity=0.364 Sum_probs=21.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..-|+++|.+|+|||||...+...
T Consensus 27 ~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 27 KAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp -CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHhC
Confidence 3467999999999999999999743
No 442
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=97.25 E-value=0.0002 Score=47.20 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=21.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
...-|+++|.+|+|||||.+.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999854
No 443
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=97.25 E-value=8.1e-05 Score=54.88 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=21.6
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.+.|++||||||+.+.|+-.+
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3589999999999999999998543
No 444
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=97.25 E-value=0.00046 Score=49.36 Aligned_cols=39 Identities=13% Similarity=0.191 Sum_probs=32.0
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhhh
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~ 45 (143)
.+.+..+.+|+||||+|..|+..+...+.++.++..|..
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID~D~~ 132 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLIDCDMR 132 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEECCTT
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEeccCC
Confidence 444555568999999999999999888899988888754
No 445
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=97.25 E-value=0.00042 Score=46.89 Aligned_cols=38 Identities=16% Similarity=0.122 Sum_probs=27.9
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
.+..+.+++|++||||||-..+....+...+.++.++.
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~k 55 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 55 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEc
Confidence 34579999999999999666665555555567777775
No 446
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=97.25 E-value=0.0002 Score=46.97 Aligned_cols=25 Identities=28% Similarity=0.250 Sum_probs=21.6
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++..-|+++|.+|+|||||...+..
T Consensus 3 ~~~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 3 PQAIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CcEEEEEEECCCCCCHHHHHHHHHc
Confidence 3456799999999999999999874
No 447
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=97.23 E-value=0.00023 Score=49.79 Aligned_cols=24 Identities=29% Similarity=0.487 Sum_probs=21.1
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++..|+++|.+||||||+...|..
T Consensus 21 ~~~~I~lvG~~g~GKStl~n~l~~ 44 (260)
T 2xtp_A 21 SELRIILVGKTGTGKSAAGNSILR 44 (260)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHhC
Confidence 346799999999999999999974
No 448
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=97.23 E-value=0.0002 Score=46.54 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=20.7
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+||||||+.+.|...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999854
No 449
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=97.23 E-value=0.00018 Score=46.92 Aligned_cols=21 Identities=19% Similarity=0.403 Sum_probs=19.3
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.-|+++|.+||||||+...|.
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHh
Confidence 569999999999999999986
No 450
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=97.23 E-value=0.00021 Score=53.73 Aligned_cols=24 Identities=29% Similarity=0.372 Sum_probs=21.3
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.++.++|++||||||+.+.|.-.
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCC
Confidence 458999999999999999999853
No 451
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.22 E-value=0.0002 Score=54.09 Aligned_cols=21 Identities=29% Similarity=0.330 Sum_probs=19.3
Q ss_pred EEEEccCCCChhHHHHHHHHH
Q psy2713 9 VALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 9 i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.++|++|||||||.+.|...
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 899999999999999999743
No 452
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.22 E-value=0.00017 Score=48.53 Aligned_cols=25 Identities=32% Similarity=0.246 Sum_probs=21.4
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.+.-|+++|.+|||||||...+...
T Consensus 24 ~~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 24 IRKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred cCcEEEEECcCCCCHHHHHHHHhcC
Confidence 3457999999999999999999753
No 453
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=97.22 E-value=0.00023 Score=47.08 Aligned_cols=23 Identities=22% Similarity=0.356 Sum_probs=20.5
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
..-|+++|.+|||||||...+..
T Consensus 20 ~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 20 IFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHc
Confidence 35799999999999999999874
No 454
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=97.21 E-value=0.00022 Score=51.42 Aligned_cols=25 Identities=20% Similarity=0.251 Sum_probs=22.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
.+++++|++|+||||+++.+++.++
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~ 56 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP 56 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC
Confidence 5799999999999999999998753
No 455
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=97.21 E-value=0.00017 Score=58.75 Aligned_cols=26 Identities=27% Similarity=0.408 Sum_probs=22.8
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHc
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLT 31 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~ 31 (143)
+..++++|+||+||||+++.+++.+.
T Consensus 191 ~~~vlL~G~pG~GKT~la~~la~~l~ 216 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIVEGLAQRIV 216 (854)
T ss_dssp CCCCEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCceEEEcCCCCCHHHHHHHHHHHHh
Confidence 34578999999999999999999873
No 456
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.21 E-value=0.00024 Score=47.66 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.3
Q ss_pred CCeEEEEEccCCCChhHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~ 27 (143)
++.-|+++|.+||||||+.+.+.
T Consensus 24 ~~~ki~lvG~~~vGKSsLi~~l~ 46 (198)
T 1f6b_A 24 KTGKLVFLGLDNAGKTTLLHMLK 46 (198)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHh
Confidence 34568999999999999999986
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.21 E-value=0.0003 Score=46.45 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.8
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.+..-|+++|.+||||||+...+..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3467899999999999999999973
No 458
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=97.21 E-value=0.00065 Score=51.53 Aligned_cols=40 Identities=23% Similarity=0.361 Sum_probs=27.8
Q ss_pred cCCeEEEEeCCchhHHHHHHHHHHHHhhcCCEEEEEEeecC
Q psy2713 87 NDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127 (143)
Q Consensus 87 ~~~~~vi~d~~~~~~~~r~~~~~~~~~~~~~~~~~v~~~~~ 127 (143)
.....+++|++....+.-..+.. .+.+.+.+++++---+|
T Consensus 278 ad~~llviD~~~~~~~~~~~~~~-~~~~~~~~~ilv~NK~D 317 (456)
T 4dcu_A 278 SEVVAVVLDGEEGIIEQDKRIAG-YAHEAGKAVVIVVNKWD 317 (456)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHH-HHHHTTCEEEEEEECGG
T ss_pred CCEEEEEEeCCCCcCHHHHHHHH-HHHHcCCCEEEEEEChh
Confidence 34566888988765556667777 77778888877655444
No 459
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=97.20 E-value=0.0002 Score=47.18 Aligned_cols=21 Identities=24% Similarity=0.420 Sum_probs=18.9
Q ss_pred EEEEEccCCCChhHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~ 28 (143)
-|+++|.+||||||+...+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTG 23 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 478999999999999999874
No 460
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=97.20 E-value=0.00023 Score=46.82 Aligned_cols=24 Identities=33% Similarity=0.409 Sum_probs=20.6
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+..-|+++|.+|||||||...+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999974
No 461
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.20 E-value=0.00024 Score=47.27 Aligned_cols=23 Identities=35% Similarity=0.440 Sum_probs=20.2
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+.-|++.|.+||||||+.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45789999999999999999985
No 462
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=97.20 E-value=0.00033 Score=51.99 Aligned_cols=35 Identities=14% Similarity=0.118 Sum_probs=28.1
Q ss_pred eEEEEEccCCCChhHHHHHHHHHHccCCCCceeEe
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS 41 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~ 41 (143)
..++++|++||||||+++.+...+...+..+.++.
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 46789999999999999999977766666555554
No 463
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=97.20 E-value=0.00025 Score=45.58 Aligned_cols=22 Identities=41% Similarity=0.465 Sum_probs=19.5
Q ss_pred EEEEEccCCCChhHHHHHHHHH
Q psy2713 8 VVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 8 ~i~l~G~pGsGKSTla~~l~~~ 29 (143)
-|++.|.+|+||||+...+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
No 464
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=97.20 E-value=0.00025 Score=46.69 Aligned_cols=22 Identities=18% Similarity=0.221 Sum_probs=20.2
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.-|+++|.+|||||||...|..
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999985
No 465
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=97.20 E-value=0.00024 Score=47.91 Aligned_cols=25 Identities=36% Similarity=0.374 Sum_probs=20.9
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+..-|+++|.+|+|||||...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4567999999999999999999854
No 466
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=97.20 E-value=0.00024 Score=46.30 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+|+||||+...+...
T Consensus 10 ~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 10 AFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHhC
Confidence 457999999999999999999753
No 467
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=97.19 E-value=0.00023 Score=46.77 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+||||||+.+.+...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56999999999999999999754
No 468
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=97.19 E-value=0.00025 Score=50.27 Aligned_cols=25 Identities=36% Similarity=0.636 Sum_probs=22.1
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
|++..|+++|.|||||||+.+.|..
T Consensus 1 M~~~~I~lvG~~n~GKSTLin~l~g 25 (274)
T 3i8s_A 1 MKKLTIGLIGNPNSGKTTLFNQLTG 25 (274)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhC
Confidence 4567899999999999999999964
No 469
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=97.18 E-value=0.00023 Score=51.24 Aligned_cols=24 Identities=21% Similarity=0.336 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..++.+.|+|||||||+.+.|+..
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~ 192 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPG 192 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTT
T ss_pred CCeEEEECCCCCcHHHHHHHhccc
Confidence 357899999999999999999744
No 470
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=97.18 E-value=0.00027 Score=47.30 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|||||||...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 457999999999999999999754
No 471
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=97.17 E-value=0.00028 Score=46.43 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=21.3
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.++.-|+++|.+||||||+...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~ 40 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNG 40 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhc
Confidence 3457799999999999999999874
No 472
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.17 E-value=0.00031 Score=45.39 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
+.+.+++|+.||||||+...|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999998655
No 473
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.17 E-value=0.00036 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
...-|+++|.+|||||||...|..
T Consensus 7 ~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 7 NDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CeeEEEEECCCCCcHHHHHHHHHc
Confidence 346799999999999999999975
No 474
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=97.16 E-value=0.00025 Score=47.04 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+.-|+++|.+|||||||...+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999863
No 475
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=97.15 E-value=0.00028 Score=46.74 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||.+.|...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 476
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.14 E-value=0.00026 Score=54.73 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.1
Q ss_pred CeEEEEEccCCCChhHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKL 26 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l 26 (143)
..+++++|++||||||+++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 468999999999999999995
No 477
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.14 E-value=0.00035 Score=54.21 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=22.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
...+|.++|++|+||||+|+.+++
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999996
No 478
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=97.14 E-value=0.00028 Score=49.28 Aligned_cols=24 Identities=21% Similarity=0.304 Sum_probs=20.8
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++.-|+|+|.||+||||+...|..
T Consensus 20 ~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 20 STRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred CceEEEEECCCCCcHHHHHHHHhC
Confidence 345799999999999999999863
No 479
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.13 E-value=0.013 Score=39.55 Aligned_cols=125 Identities=10% Similarity=0.062 Sum_probs=67.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh----hhhhhhhhc-------CCCCccccCchhhhhHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA----YRRKHLELY-------NSHDIFRVDNTEGYNIRQLSA 74 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~----~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 74 (143)
+-+|++.+.+|.||||.|-.++-+.-..|.++.++.... +.+...... .+.. |.....+... ....+
T Consensus 28 ~g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~g-f~~~~~~~~~-~~~~a 105 (196)
T 1g5t_A 28 RGIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATG-FTWETQNREA-DTAAC 105 (196)
T ss_dssp CCCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTT-CCCCGGGHHH-HHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccc-cccCCCCcHH-HHHHH
Confidence 347888888899999999999977766688888873221 111111100 0111 2111111111 11223
Q ss_pred HHHHHHHHHHHh-cCCeEEEEeCCchh----HHHHHHHHHHHHh-hcCCEEEEEEeecCcHHHHH
Q psy2713 75 REAQEDATKWLK-NDGEVAIIDGTTAT----MEKRKQIHDYFAR-KMGFKVLFVELIVQDEEILE 133 (143)
Q Consensus 75 ~~~~~~~~~~l~-~~~~~vi~d~~~~~----~~~r~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~ 133 (143)
...+..+.+.+. ..-+.+|+|..+.- .-..+.+.+ .+. ++.-.-+++-...+.++++.
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~-~l~~Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVIS-ALNARPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHH-HHHTSCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHH-HHHhCcCCCEEEEECCCCcHHHHH
Confidence 445555666663 33578999998642 111233444 443 33333456777777777665
No 480
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=97.13 E-value=0.00045 Score=49.20 Aligned_cols=40 Identities=15% Similarity=0.027 Sum_probs=32.4
Q ss_pred eEEEEE--ccCCCChhHHHHHHHHHHccCCCCceeEehhhhh
Q psy2713 7 LVVALV--GLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46 (143)
Q Consensus 7 ~~i~l~--G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~~~ 46 (143)
.+.+.. +..|+||||+|..|+..+...+.++.++..|...
T Consensus 36 ~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlliD~D~q~ 77 (298)
T 2oze_A 36 AIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMIDKDLQA 77 (298)
T ss_dssp CEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred EEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEEeCCCCC
Confidence 344444 5999999999999999998888999998887543
No 481
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=97.13 E-value=0.00036 Score=47.76 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.0
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++.-|+++|.+|+|||||...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999999864
No 482
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.13 E-value=0.00033 Score=54.51 Aligned_cols=24 Identities=38% Similarity=0.519 Sum_probs=21.5
Q ss_pred CCeEEEEEccCCCChhHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
...+|.++|++|+||||+|..++.
T Consensus 146 ~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 146 EPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCceEEEEcCCCCCHHHHHHHHHh
Confidence 457899999999999999999974
No 483
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=97.13 E-value=0.00019 Score=51.96 Aligned_cols=23 Identities=30% Similarity=0.247 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.||+||||+|..|.++
T Consensus 148 ~gvli~G~sG~GKStlal~l~~~ 170 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLINK 170 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHTT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46999999999999999998754
No 484
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=97.12 E-value=0.00032 Score=51.86 Aligned_cols=38 Identities=13% Similarity=0.042 Sum_probs=31.2
Q ss_pred CeEEEE-EccCCCChhHHHHHHHHHHccCCCCceeEehh
Q psy2713 6 PLVVAL-VGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS 43 (143)
Q Consensus 6 ~~~i~l-~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d 43 (143)
+.+|.+ .|..|+||||+|..|+..+...+.++.++..|
T Consensus 143 ~kvIav~s~KGGvGKTT~a~nLA~~La~~g~rVlliD~D 181 (373)
T 3fkq_A 143 SSVVIFTSPCGGVGTSTVAAACAIAHANMGKKVFYLNIE 181 (373)
T ss_dssp CEEEEEECSSTTSSHHHHHHHHHHHHHHHTCCEEEEECC
T ss_pred ceEEEEECCCCCChHHHHHHHHHHHHHhCCCCEEEEECC
Confidence 455555 46999999999999999887778888888876
No 485
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=97.12 E-value=0.00037 Score=46.86 Aligned_cols=25 Identities=28% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCeEEEEEccCCCChhHHHHHHHHH
Q psy2713 5 TPLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 5 ~~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
++.-|+++|.+||||||+...+...
T Consensus 29 ~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 29 QAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CeEEEEEECcCCCCHHHHHHHHHhC
Confidence 4567999999999999999998753
No 486
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=97.11 E-value=0.00026 Score=49.78 Aligned_cols=25 Identities=40% Similarity=0.507 Sum_probs=21.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHH
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
++..-|+++|.|||||||+...|..
T Consensus 3 ~~~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 3 LHMVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp CEEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHC
Confidence 3456799999999999999999974
No 487
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=97.11 E-value=0.00026 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=21.2
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-++++|.||+||||+|..|.++
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 56999999999999999999876
No 488
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=97.11 E-value=0.00031 Score=46.43 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||...|...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999754
No 489
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=97.11 E-value=0.00023 Score=47.61 Aligned_cols=21 Identities=38% Similarity=0.507 Sum_probs=19.2
Q ss_pred eEEEEEccCCCChhHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLS 27 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~ 27 (143)
.-|+++|.+|||||||.+.+.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHH
Confidence 579999999999999999884
No 490
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=97.10 E-value=0.00034 Score=46.40 Aligned_cols=23 Identities=17% Similarity=0.329 Sum_probs=20.6
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||...+...
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~ 46 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADD 46 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHhcC
Confidence 46999999999999999999854
No 491
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=97.10 E-value=0.00056 Score=53.49 Aligned_cols=41 Identities=17% Similarity=0.154 Sum_probs=35.5
Q ss_pred CCCeEEEEEccCCCChhHHHHHHHHHHccCCCCceeEehhh
Q psy2713 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44 (143)
Q Consensus 4 ~~~~~i~l~G~pGsGKSTla~~l~~~l~~~~~~~~~~~~d~ 44 (143)
++..++++.|.+|+||||+|..++..+...|.++.+++.|.
T Consensus 325 ~~~~~~~~~~~~g~Gktt~a~~lA~~l~~~g~~vllvD~Dp 365 (589)
T 1ihu_A 325 NEHGLIMLMGKGGVGKTTMAAAIAVRLADMGFDVHLTTSDP 365 (589)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESCC
T ss_pred cCCeEEEEecCCCCChhhHHHHHHHHHHHCCCcEEEEeCCC
Confidence 34568899999999999999999999988888888887774
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.09 E-value=0.00031 Score=54.97 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=22.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRYL 30 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~l 30 (143)
..++.++|++||||||+.+.|+..+
T Consensus 369 G~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 369 GKTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3579999999999999999998665
No 493
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=97.09 E-value=0.0003 Score=46.99 Aligned_cols=22 Identities=18% Similarity=0.406 Sum_probs=19.8
Q ss_pred eEEEEEccCCCChhHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~ 28 (143)
.-|+++|.+|||||||...|..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~ 30 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYAD 30 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 5699999999999999999874
No 494
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=97.09 E-value=0.00025 Score=46.88 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.0
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+|+|||||...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999754
No 495
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=97.09 E-value=0.00031 Score=46.51 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=20.5
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||...|...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999853
No 496
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=97.09 E-value=0.00035 Score=47.32 Aligned_cols=23 Identities=35% Similarity=0.358 Sum_probs=20.4
Q ss_pred CeEEEEEccCCCChhHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSR 28 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~ 28 (143)
+.-|+++|.+|+|||||...+..
T Consensus 34 ~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 34 SVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 35799999999999999999973
No 497
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=97.08 E-value=0.00033 Score=46.52 Aligned_cols=24 Identities=25% Similarity=0.376 Sum_probs=20.9
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
..-|+++|.+|+|||||...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 356999999999999999999754
No 498
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=97.08 E-value=0.00036 Score=46.20 Aligned_cols=23 Identities=30% Similarity=0.469 Sum_probs=20.4
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||...+...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999753
No 499
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=97.08 E-value=0.00038 Score=46.16 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred eEEEEEccCCCChhHHHHHHHHH
Q psy2713 7 LVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 7 ~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
.-|+++|.+|+|||||...+...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 500
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=97.08 E-value=0.00034 Score=46.44 Aligned_cols=24 Identities=38% Similarity=0.391 Sum_probs=21.1
Q ss_pred CeEEEEEccCCCChhHHHHHHHHH
Q psy2713 6 PLVVALVGLPARGKTVLAHKLSRY 29 (143)
Q Consensus 6 ~~~i~l~G~pGsGKSTla~~l~~~ 29 (143)
+.-|+++|.+|+||||+...+...
T Consensus 23 ~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 23 ALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 357999999999999999999854
Done!