RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2713
(143 letters)
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 83.9 bits (206), Expect = 2e-21
Identities = 50/133 (37%), Positives = 74/133 (55%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
P ++ +VGLPARGKT ++ KL+RYL + ++ F+V YRR ++ Y S + F DN E
Sbjct: 2 PTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYKSFEFFLPDNEE 61
Query: 66 GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
G IR+ A A D K+L +G + T T +R+ + F + G+K FVE I
Sbjct: 62 GLKIRKQCALAALNDVRKFLSEEGGHVAVFDATNTTRERRAMIFNFGEQNGYKTFFVESI 121
Query: 126 VQDEEILEHNIKQ 138
D E++ NI Q
Sbjct: 122 CVDPEVIAANIVQ 134
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 40.0 bits (92), Expect = 2e-05
Identities = 21/139 (15%), Positives = 38/139 (27%), Gaps = 10/139 (7%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR---KHLELYNSHDIFRVDNT 64
VV + G+P G T + L K+ S + K L + D R +
Sbjct: 3 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDP 62
Query: 65 EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQI--HDYFARKMGFKVLFV 122
E Q A + +D + + + + L +
Sbjct: 63 ETQKRIQKMAGRKIAEM-----AKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLII 117
Query: 123 ELIVQDEEILEHNIKQSMC 141
+ +EIL +
Sbjct: 118 VVETTGDEILMRRMSDETR 136
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 40.0 bits (92), Expect = 3e-05
Identities = 16/138 (11%), Positives = 43/138 (31%), Gaps = 5/138 (3%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFS----VSAYRRKHLELYNSHDIFRVDN 63
+ + G+P GK+ + K+ L +K+ + + A K + ++ ++
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSV 62
Query: 64 TEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
+ ++ +A+ E+A + T + +
Sbjct: 63 EKQKKLQIDAAKGIAEEA-RAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIFL 121
Query: 124 LIVQDEEILEHNIKQSMC 141
L + IL + +
Sbjct: 122 LEADPKIILSRQKRDTTR 139
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 34.7 bits (79), Expect = 0.002
Identities = 24/129 (18%), Positives = 43/129 (33%), Gaps = 10/129 (7%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
VV +VG+ GKT KL RY + KV + + + + +
Sbjct: 6 GRVVLVVGVNGVGKTTTIAKLGRYY--QNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIP 63
Query: 66 GYNIRQ-LSAREAQEDATKWLKNDGEVAIIDGTTAT-------MEKRKQIHDYFARKMGF 117
+ DA + +K G + T ME+ K++ A+
Sbjct: 64 VIQGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPE 123
Query: 118 KVLFVELIV 126
+ V L++
Sbjct: 124 EPKEVWLVL 132
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 33.6 bits (76), Expect = 0.004
Identities = 19/128 (14%), Positives = 43/128 (33%), Gaps = 8/128 (6%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR-------RKHLELYNSHDI 58
P V+ +VG+ GKT KL++ + + +R + E + I
Sbjct: 11 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVI 70
Query: 59 FRVDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFK 118
+ + + + A + D + ME+ +++H +K+
Sbjct: 71 SHSEGADPAAVAFDAVAHALARNKDVVIID-TAGRLHTKKNLMEELRKVHRVVKKKIPDA 129
Query: 119 VLFVELIV 126
L++
Sbjct: 130 PHETLLVI 137
>d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS
kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 208
Score = 33.3 bits (75), Expect = 0.006
Identities = 29/131 (22%), Positives = 47/131 (35%), Gaps = 13/131 (9%)
Query: 1 LRQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFR 60
LR L + L GL A GK+ LA +L L R L + D+
Sbjct: 19 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFGL----NKDLGF 74
Query: 61 VDNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKR---KQIHDYFARKMGF 117
+ NIR++ + K + +AI + + R +Q+H+
Sbjct: 75 SEADRNENIRRI------AEVAKLFADSNSIAITSFISPYRKDRDTARQLHEVATPGEET 128
Query: 118 KVLFVELIVQD 128
+ FVE+ V
Sbjct: 129 GLPFVEVYVDV 139
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 33.1 bits (74), Expect = 0.006
Identities = 11/56 (19%), Positives = 15/56 (26%)
Query: 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD 57
R + L G GK +A L L +S + R L
Sbjct: 2 RATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFT 57
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 33.1 bits (74), Expect = 0.006
Identities = 17/117 (14%), Positives = 32/117 (27%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
T ++ L G + GK+ + L L V S+ ++ F D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGG 61
Query: 65 EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLF 121
+ A + + G IID ++ F + +
Sbjct: 62 VSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVG 118
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 32.9 bits (74), Expect = 0.007
Identities = 20/138 (14%), Positives = 35/138 (25%), Gaps = 33/138 (23%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
P VV VG P GK+ + +
Sbjct: 14 PEVVVAVGFPGAGKSTFIQEHLVSAGY--------------------------------V 41
Query: 66 GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
N L + + + + G+ +ID T + R + + G
Sbjct: 42 HVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDVPSRARYIQCA-KDAGVPCRCFNFC 100
Query: 126 VQDEEILEHNIKQSMCSP 143
E+ +N + M P
Sbjct: 101 ATIEQARHNNRFREMTDP 118
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 31.6 bits (70), Expect = 0.019
Identities = 17/130 (13%), Positives = 38/130 (29%), Gaps = 8/130 (6%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
++ +G P GK+ A + + ++ + + + G
Sbjct: 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGM 63
Query: 68 NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
+ + + + II T E+R + +KV V
Sbjct: 64 QFDTA-------KSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYG-WKVEHKVFDVP 115
Query: 128 DEEILEHNIK 137
E+++ N K
Sbjct: 116 WTELVKRNSK 125
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.6 bits (71), Expect = 0.021
Identities = 11/42 (26%), Positives = 18/42 (42%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYR 46
P V+ +VG+ GKT KL+R + + +R
Sbjct: 8 APFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 49
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 30.9 bits (69), Expect = 0.035
Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49
P V+ LVG+ GK A KL+ + KV V A +
Sbjct: 11 IPYVIMLVGVQGTGKATTAGKLAYFY--KKKGFKVGLVGADVYRP 53
>d1e0ba_ b.34.13.2 (A:) Heterochromatin protein 1, HP1 {Fission
yeast (Schizosaccharomyces pombe), SWI6 [TaxId: 4896]}
Length = 61
Score = 29.0 bits (65), Expect = 0.040
Identities = 12/37 (32%), Positives = 15/37 (40%), Gaps = 4/37 (10%)
Query: 24 HKLSRYLTWT-DHKSKVFSVSAYRR---KHLELYNSH 56
L YLTW S S ++ K L+ Y SH
Sbjct: 24 GTLEIYLTWKNGAISHHPSTITNKKCPQKMLQFYESH 60
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.8 bits (68), Expect = 0.041
Identities = 16/136 (11%), Positives = 33/136 (24%), Gaps = 12/136 (8%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
+ + G GK+ +L+ L + + Y +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQLDNS----AYIEGDIINHMVVGGYRPPWESDELLALTW 59
Query: 68 NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
D T ++D E A+ ++ F+ L
Sbjct: 60 KN--------ITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTN 111
Query: 128 DEEILEHNIKQSMCSP 143
EE+L + +
Sbjct: 112 REELLRRDALRKKDEQ 127
>d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli
[TaxId: 562]}
Length = 308
Score = 30.4 bits (68), Expect = 0.059
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS--AYRRKHLELYNSHDIFRVD 62
P ++++ G A GK+ A L L+ +V ++ + + L + +
Sbjct: 79 IPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKG 138
Query: 63 NTEGYNIRQL 72
E Y++ +L
Sbjct: 139 FPESYDMHRL 148
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 30.0 bits (66), Expect = 0.071
Identities = 19/137 (13%), Positives = 43/137 (31%), Gaps = 13/137 (9%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHD---IFRVDNT 64
V+ ++G P GK KL + ++ S R S I
Sbjct: 10 VIFVLGGPGAGKGTQCEKLVKDYSFV-----HLSAGDLLRAEQGRAGSQYGELIKNCIKE 64
Query: 65 EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVEL 124
++++ + + +K + +IDG M++ + + F+
Sbjct: 65 GQIVPQEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAISFE-----RDIVESKFILF 119
Query: 125 IVQDEEILEHNIKQSMC 141
E+I+ + +
Sbjct: 120 FDCPEDIMLERLLERGK 136
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.7 bits (65), Expect = 0.092
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYN 54
LV+ + GL GKT LA++LS+ L VF + + + + Y+
Sbjct: 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYH 70
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 29.5 bits (65), Expect = 0.096
Identities = 22/132 (16%), Positives = 42/132 (31%), Gaps = 6/132 (4%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYN 68
V L+G P GK A KL+ L + + + +
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPSD 62
Query: 69 IRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQD 128
+ + + + I+DG ++E+ K +H+ + G + V
Sbjct: 63 LTNELVDDRLNNP-----DAANGFILDGYPRSVEQAKALHEML-ERRGTDIDAVLEFRVS 116
Query: 129 EEILEHNIKQSM 140
EE+L +K
Sbjct: 117 EEVLLERLKGRG 128
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 29.7 bits (66), Expect = 0.096
Identities = 20/113 (17%), Positives = 37/113 (32%), Gaps = 7/113 (6%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIF-RVDNT 64
+ LVGL GKT A KL+ Y + V+A ++ + +V
Sbjct: 10 RNLWFLVGLQGSGKTTTAAKLALYY--KGKGRRPLLVAADTQRPAAREQLRLLGEKVGVP 67
Query: 65 EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGF 117
+ S + + + + I+ T R QI + ++
Sbjct: 68 VLEVMDGESPESIRRRVEEKARLEARDLILVDTA----GRLQIDEPLMGELAR 116
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 29.6 bits (65), Expect = 0.098
Identities = 16/115 (13%), Positives = 28/115 (24%), Gaps = 16/115 (13%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
++A GKT L KL L + + + +
Sbjct: 4 LLAFAAWSGTGKTTLLKKLIPAL---------------CARGIRPGLIKHTHHDMDVDKP 48
Query: 68 NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFV 122
R+A T + A++ T E Q ++ V
Sbjct: 49 GKDSYELRKAGAAQTIVA-SQQRWALMTETPDEEELDLQFLASRMDTSKLDLILV 102
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 29.3 bits (64), Expect = 0.12
Identities = 14/62 (22%), Positives = 19/62 (30%)
Query: 4 FTPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDN 63
F V L GL GKT ++ L YL R+ + R +N
Sbjct: 17 FRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQGLNKNLGFSPEDREEN 76
Query: 64 TE 65
Sbjct: 77 VR 78
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 29.2 bits (64), Expect = 0.16
Identities = 8/37 (21%), Positives = 17/37 (45%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSV 42
P ++ + G A GK+ + K+ + L + + V
Sbjct: 2 PFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQV 38
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.4 bits (62), Expect = 0.22
Identities = 16/136 (11%), Positives = 37/136 (27%), Gaps = 7/136 (5%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
P VV ++G P GK + R +SA E + + T
Sbjct: 6 PNVVFVLGGPGSGKGTQCANIVRDF-------GWVHLSAGDLLRQEQQSGSKDGEMIATM 58
Query: 66 GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
N + + + + + + E+ + + +
Sbjct: 59 IKNGEIVPSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFD 118
Query: 126 VQDEEILEHNIKQSMC 141
+E + + +K+
Sbjct: 119 CPEEVMTQRLLKRGES 134
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.4 bits (62), Expect = 0.25
Identities = 13/120 (10%), Positives = 29/120 (24%), Gaps = 9/120 (7%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGY 67
++ L G P GK+ +A L+ + + D + + +
Sbjct: 6 ILLLSGHPGSGKSTIAEALANLPGV-----PKVHFHSDDLWGYIKHGRIDPWLPQSHQQN 60
Query: 68 NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
+ + D +G I+DG ++
Sbjct: 61 RMI----MQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIE 116
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 200
Score = 28.3 bits (63), Expect = 0.28
Identities = 20/130 (15%), Positives = 40/130 (30%), Gaps = 15/130 (11%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDI-----FRVD 62
VV G GKT L +S YL + V + K + +I V+
Sbjct: 29 VVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKVKGKIFFLPEEIIVPRKISVE 88
Query: 63 NTEGYNIRQLSAREAQEDATKWLKNDGEVAI---IDGTTATMEKRKQIHDYFARKMGFKV 119
+ + + + L++ + + + + +R Q+
Sbjct: 89 DYLKAVASLYGVKVNKNEIMDALESVEVLDLKKKLGELSQGTIRRVQLASTLLVNA---- 144
Query: 120 LFVELIVQDE 129
E+ V D+
Sbjct: 145 ---EIYVLDD 151
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 27.7 bits (60), Expect = 0.37
Identities = 7/44 (15%), Positives = 15/44 (34%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE 51
+ L+G+ GK+ +A +++ L K
Sbjct: 8 IYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMAS 51
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 27.6 bits (60), Expect = 0.54
Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKH 49
P L G P GKT L + T V ++++H
Sbjct: 32 PTAFLLGGQPGSGKTSLRSAIFE---ETQGNVIVIDNDTFKQQH 72
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 27.3 bits (59), Expect = 0.63
Identities = 19/143 (13%), Positives = 31/143 (21%), Gaps = 17/143 (11%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYN 68
+ + G P GKT L K+ L V K +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 69 IRQLSAREAQEDATKW-----------------LKNDGEVAIIDGTTATMEKRKQIHDYF 111
K+ +V IID K+ D
Sbjct: 63 FFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122
Query: 112 ARKMGFKVLFVELIVQDEEILEH 134
+ M + V + ++
Sbjct: 123 RQIMHDPNVNVVATIPIRDVHPL 145
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.9 bits (58), Expect = 0.64
Identities = 8/106 (7%), Positives = 26/106 (24%), Gaps = 4/106 (3%)
Query: 9 VALVGLPARGKTVLAHKLSRY----LTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
+ ++GL GKT + K + ++ T + + ++ R
Sbjct: 5 LLMLGLDNAGKTTILKKFNGEDVDTISPTLGFNIKTLEHRGFKLNIWDVGGQKSLRSYWR 64
Query: 65 EGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDY 110
+ + +++ + +
Sbjct: 65 NYFESTDGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLLIFA 110
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 26.9 bits (58), Expect = 0.87
Identities = 14/45 (31%), Positives = 17/45 (37%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL 52
V L G P GKT L HK S L + F R+ +
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRI 47
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 26.4 bits (57), Expect = 0.95
Identities = 15/103 (14%), Positives = 31/103 (30%), Gaps = 7/103 (6%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTW-------TDHKSKVFSVSAYRRKHLELYNSHDIFRV 61
+ +G GK+ LA L++ L + VS + E + ++
Sbjct: 3 IVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQEQKM 62
Query: 62 DNTEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKR 104
+ + A L+ G + ++KR
Sbjct: 63 ADFFSSCEKACIATGGGFVNVSNLEKAGFCIYLKADFEYLKKR 105
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 26.6 bits (57), Expect = 0.96
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTW 32
+ LVG GK+ + +L++ L
Sbjct: 5 IFLVGPMGAGKSTIGRQLAQQLNM 28
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 26.5 bits (57), Expect = 1.1
Identities = 21/136 (15%), Positives = 43/136 (31%), Gaps = 25/136 (18%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
PLVV ++G P GK ++ +T HL ++ ++ R
Sbjct: 1 PLVVFVLGGPGAGKGTQCARIVEKYGYT---------------HL---SAGELLR----- 37
Query: 66 GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELI 125
+ R+ + E K++K V + + + Q A+K F +
Sbjct: 38 --DERKNPDSQYGELIEKYIKEGKIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRN 95
Query: 126 VQDEEILEHNIKQSMC 141
+ + +
Sbjct: 96 QDNLQGWNKTMDGKAD 111
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 26.5 bits (57), Expect = 1.1
Identities = 9/24 (37%), Positives = 14/24 (58%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTW 32
LVGLP GK+ + +L++ L
Sbjct: 4 AVLVGLPGSGKSTIGRRLAKALGV 27
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 26.3 bits (57), Expect = 1.4
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYL 30
PL + G GK+ + ++ +L
Sbjct: 26 CPLFIFFSGPQGSGKSFTSIQIYNHL 51
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 26.0 bits (56), Expect = 1.8
Identities = 15/116 (12%), Positives = 33/116 (28%), Gaps = 4/116 (3%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTE 65
PL V + G PA GK + + + R + + + +
Sbjct: 3 PLKVMISGAPASGKGTQCELIKTKYQLA----HISAGDLLRAEIAAGSENGKRAKEFMEK 58
Query: 66 GYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLF 121
G + ++ + ++DG + + + R F +L
Sbjct: 59 GQLVPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIRPDTFILLD 114
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 25.8 bits (55), Expect = 1.9
Identities = 8/38 (21%), Positives = 11/38 (28%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAY 45
+ L G GK+ L H L+ Y
Sbjct: 36 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLY 73
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 25.7 bits (55), Expect = 1.9
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKS 37
+ + + G P GKT +A ++ L H
Sbjct: 5 GINILITGTPGTGKTSMAEMIAAELDGFQHLE 36
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 25.8 bits (55), Expect = 2.0
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 2 RQFTPLVVALVGLPARGKTVLAHKLSRYLTWT 33
R F VA++G + GK+VL +KL+ T
Sbjct: 3 RPFFAKTVAILGGESSGKSVLVNKLAAVFNTT 34
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 25.7 bits (55), Expect = 2.1
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTW 32
+ +VG G T + +L+R L +
Sbjct: 5 IFMVGARGCGMTTVGRELARALGY 28
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 25.7 bits (55), Expect = 2.1
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLEL 52
+ ++GL GKT + ++L T + F+V K+L+L
Sbjct: 20 ILILGLDGAGKTTILYRLQIGEVVTTKPTIGFNVETLSYKNLKL 63
>d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle
domain {Thermus thermophilus [TaxId: 274]}
Length = 180
Score = 25.4 bits (54), Expect = 2.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
V LVG P GK+ L ++R
Sbjct: 4 VGLVGYPNAGKSSLLAAMTR 23
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 24.9 bits (53), Expect = 3.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTW 32
+ L G P GKT L +L+
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGL 30
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor
beta-subunit {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 209
Score = 25.0 bits (53), Expect = 3.3
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 8 VVALVGLPARGKTVLAHKLSR 28
+ + G GKT L L+
Sbjct: 5 SIIIAGPQNSGKTSLLTLLTT 25
>d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus
[TaxId: 274]}
Length = 191
Score = 24.9 bits (53), Expect = 3.3
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRY 29
P+++ + G GK+ +A L +
Sbjct: 3 PIIIGITGNIGSGKSTVAALLRSW 26
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 25.0 bits (53), Expect = 3.4
Identities = 5/27 (18%), Positives = 15/27 (55%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32
+ +A+ G + GK+ +A +++ +
Sbjct: 3 TIQIAIDGPASSGKSTVAKIIAKDFGF 29
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 24.9 bits (53), Expect = 4.3
Identities = 18/140 (12%), Positives = 35/140 (25%), Gaps = 9/140 (6%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLE-LYNSHDIFRV----DN 63
V L G GK+ L KL + FSVS R + D + V
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQ----EHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQ 58
Query: 64 TEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVE 123
+ + E + K ++ Q + +
Sbjct: 59 RDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFV 118
Query: 124 LIVQDEEILEHNIKQSMCSP 143
+ + + ++ +
Sbjct: 119 QPPSLDVLEQRLRLRNTETE 138
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 24.9 bits (54), Expect = 4.5
Identities = 6/42 (14%), Positives = 15/42 (35%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRR 47
++++ G G + + H + K+ A+ R
Sbjct: 4 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHR 45
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 24.6 bits (52), Expect = 4.6
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWT 33
V+ + G GK L ++ L W
Sbjct: 5 VITIDGPSGAGKGTLCKAMAEALQWH 30
>d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 24.7 bits (52), Expect = 4.7
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
+A+VG P GK+ L +KL
Sbjct: 8 IAIVGRPNVGKSTLLNKLLG 27
>d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus
thermophilus [TaxId: 274]}
Length = 178
Score = 24.7 bits (52), Expect = 5.0
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 8 VVALVGLPARGKTVLAHKLSR 28
VA+VG P GK+ L + L
Sbjct: 7 FVAIVGKPNVGKSTLLNNLLG 27
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 24.6 bits (52), Expect = 5.3
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 6 PLVVALVGLPARGKTVLAHKLSRYLTW 32
P V + G GKT + +Y
Sbjct: 9 PFTVLIEGNIGSGKTTYLNHFEKYKND 35
>d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle
domain {Bacillus subtilis [TaxId: 1423]}
Length = 185
Score = 24.5 bits (52), Expect = 5.4
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
V LVG P+ GK+ L +S
Sbjct: 4 VGLVGFPSVGKSTLLSVVSS 23
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 24.3 bits (51), Expect = 5.6
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
V + G P GK+ L + L+
Sbjct: 4 VVIAGRPNAGKSSLLNALAG 23
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 24.6 bits (53), Expect = 5.7
Identities = 9/36 (25%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSA 44
G GKT LA L K +V+
Sbjct: 157 WLFKGPIDSGKTTLAAALLELC-----GGKALNVNL 187
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 24.6 bits (52), Expect = 6.2
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 7 LVVALVGLPARGKTVLAHKLSRYLT 31
++V VG GKT L + RYL
Sbjct: 1 MIVVFVGTAGSGKTTLTGEFGRYLE 25
>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
middle domains {Thermotoga maritima [TaxId: 2336]}
Length = 171
Score = 24.3 bits (51), Expect = 6.3
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
V +VG P GK+ L +KL +
Sbjct: 3 VLIVGRPNVGKSTLFNKLVK 22
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 24.2 bits (51), Expect = 6.4
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 9 VALVGLPARGKTVLAHKLSR 28
V VGL GKT+L +L
Sbjct: 3 VLFVGLCDSGKTLLFVRLLT 22
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 24.4 bits (52), Expect = 6.7
Identities = 10/65 (15%), Positives = 14/65 (21%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNT 64
L + + G P GK+ L K V +V D
Sbjct: 53 NTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLA 112
Query: 65 EGYNI 69
Sbjct: 113 RAEAA 117
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 24.3 bits (52), Expect = 6.9
Identities = 21/119 (17%), Positives = 36/119 (30%), Gaps = 6/119 (5%)
Query: 5 TPLVVALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVS-AYRRKHLELYNSHDIFRVDN 63
+ L VA+ G GK+ + L R + + + V +H + + +
Sbjct: 55 SVLNVAVTGETGSGKSSFINTL-RGIGNEEEGAAKTGVVEVTMERHPYKHPNIPNVVFWD 113
Query: 64 TEGYNIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFV 122
G E K+ + D II T + I M + FV
Sbjct: 114 LPGIGSTNFPPDTYLE-KMKFYEYD--FFIIISATRFKKNDIDIAKAI-SMMKKEFYFV 168
>d3bi1a3 c.56.5.5 (A:57-117,A:351-593) Glutamate carboxypeptidase II
FOLH1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 304
Score = 24.1 bits (51), Expect = 7.1
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 68 NIRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQ 127
N++ E+ K+L N ++ + GT + KQI + ++ G + +
Sbjct: 1 NMKAFLDELKAENIKKFLYNFTQIPHLAGTEQNFQLAKQIQSQW-KEFGLDSVELAHYDV 59
Query: 128 DEEILE-HNI 136
E+ +N+
Sbjct: 60 LLEVTRIYNV 69
>d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 165
Score = 24.0 bits (51), Expect = 7.4
Identities = 8/33 (24%), Positives = 10/33 (30%)
Query: 8 VVALVGLPARGKTVLAHKLSRYLTWTDHKSKVF 40
V +VG GKT L K +
Sbjct: 3 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTV 35
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 23.7 bits (50), Expect = 8.1
Identities = 16/135 (11%), Positives = 39/135 (28%), Gaps = 5/135 (3%)
Query: 9 VALVGLPARGKTVLAHKLSRYLTWTDHKSKVFSVSAYRRKHLELYNSHDIFRVDNTEGYN 68
L+G P GK A KL++ + R + + +
Sbjct: 6 AVLLGPPGAGKGTQAPKLAKNFCVC-----HLATGDMLRAMVASGSELGKKLKATMDAGK 60
Query: 69 IRQLSAREAQEDATKWLKNDGEVAIIDGTTATMEKRKQIHDYFARKMGFKVLFVELIVQD 128
+ + ++DG T+ + + + D ++ +E + D
Sbjct: 61 LVSDEMVLELIEKNLETPPCKNGFLLDGFPRTVRQAEMLDDLMEKRKEKLDSVIEFSIPD 120
Query: 129 EEILEHNIKQSMCSP 143
++ + + S
Sbjct: 121 SLLIRRITGRLIHSD 135
>d1zkia1 d.38.1.5 (A:4-129) Hypothetical protein PA5202 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 126
Score = 23.4 bits (50), Expect = 8.1
Identities = 4/43 (9%), Positives = 15/43 (34%), Gaps = 3/43 (6%)
Query: 101 MEKRKQIHDYFARKMGFKVLFVELIVQDEEILEHNIKQSMCSP 143
M R+Q+ ++ +G + + + + + +
Sbjct: 1 MPAREQMISAYSELVGLDPVSLG---DGVAEVRLPMAAHLRNR 40
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.134 0.390
Gapped
Lambda K H
0.267 0.0465 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 533,277
Number of extensions: 23229
Number of successful extensions: 245
Number of sequences better than 10.0: 1
Number of HSP's gapped: 245
Number of HSP's successfully gapped: 99
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.9 bits)