Query psy2717
Match_columns 229
No_of_seqs 212 out of 1114
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 23:25:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2717.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2717hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00452 actin; Provisional 100.0 3.5E-66 7.5E-71 441.8 21.4 228 2-229 148-375 (375)
2 KOG0676|consensus 100.0 1.6E-66 3.4E-71 432.9 16.3 228 2-229 145-372 (372)
3 PTZ00466 actin-like protein; P 100.0 8.4E-65 1.8E-69 433.7 22.1 227 2-229 154-380 (380)
4 PTZ00281 actin; Provisional 100.0 1.3E-64 2.8E-69 433.0 19.7 228 2-229 149-376 (376)
5 PTZ00004 actin-2; Provisional 100.0 4.5E-63 9.7E-68 423.9 20.7 228 2-229 149-378 (378)
6 PF00022 Actin: Actin; InterP 100.0 7.5E-59 1.6E-63 400.7 19.3 227 2-229 142-393 (393)
7 PTZ00280 Actin-related protein 100.0 4.6E-58 1E-62 397.4 21.7 226 2-227 160-408 (414)
8 smart00268 ACTIN Actin. ACTIN 100.0 9.9E-58 2.2E-62 391.2 20.9 228 2-229 143-373 (373)
9 KOG0679|consensus 100.0 3.6E-55 7.7E-60 356.9 15.3 223 2-228 154-425 (426)
10 cd00012 ACTIN Actin; An ubiqui 100.0 2E-54 4.3E-59 370.5 20.8 226 2-227 143-371 (371)
11 KOG0677|consensus 100.0 9.9E-55 2.1E-59 338.9 14.8 227 1-227 148-386 (389)
12 KOG0680|consensus 100.0 3.2E-53 6.9E-58 338.4 17.1 225 3-229 153-399 (400)
13 COG5277 Actin and related prot 100.0 8.5E-51 1.8E-55 349.6 18.3 227 3-229 157-444 (444)
14 KOG0678|consensus 100.0 2.9E-38 6.3E-43 253.2 6.9 226 1-226 161-407 (415)
15 KOG0681|consensus 100.0 4.6E-35 1E-39 247.9 14.9 128 101-228 512-639 (645)
16 KOG0797|consensus 100.0 4.2E-33 9.1E-38 234.6 11.2 222 1-229 274-615 (618)
17 TIGR00904 mreB cell shape dete 99.9 1.2E-22 2.6E-27 171.8 6.4 175 2-202 150-326 (333)
18 PRK13930 rod shape-determining 99.9 1.7E-22 3.7E-27 170.9 6.9 175 2-202 152-327 (335)
19 PRK13929 rod-share determining 99.9 2.7E-22 5.8E-27 169.6 6.4 170 2-200 150-323 (335)
20 PRK13927 rod shape-determining 99.8 1E-21 2.2E-26 166.1 5.4 173 3-202 149-323 (334)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 8.9E-21 1.9E-25 158.0 6.5 169 4-201 147-319 (326)
22 PRK13928 rod shape-determining 99.8 3.3E-19 7.2E-24 150.9 8.2 175 2-202 147-322 (336)
23 COG1077 MreB Actin-like ATPase 99.6 1.3E-16 2.9E-21 129.5 3.3 174 4-201 155-329 (342)
24 TIGR02529 EutJ ethanolamine ut 99.3 2.4E-12 5.2E-17 103.8 6.6 129 4-199 110-238 (239)
25 PRK15080 ethanolamine utilizat 99.3 3.1E-11 6.7E-16 99.0 10.2 131 4-201 137-267 (267)
26 PRK09472 ftsA cell division pr 99.3 1.5E-11 3.2E-16 107.2 7.6 164 4-202 206-387 (420)
27 TIGR01174 ftsA cell division p 99.2 5.4E-11 1.2E-15 102.2 8.8 136 4-172 198-339 (371)
28 COG0849 ftsA Cell division ATP 99.1 3.4E-10 7.4E-15 97.3 7.2 157 4-203 205-380 (418)
29 CHL00094 dnaK heat shock prote 98.9 7.4E-09 1.6E-13 94.5 8.8 166 3-203 188-376 (621)
30 PRK01433 hscA chaperone protei 98.9 1.1E-08 2.4E-13 92.6 9.7 157 4-203 195-356 (595)
31 PRK00290 dnaK molecular chaper 98.8 1.2E-08 2.6E-13 93.4 9.1 166 3-203 186-374 (627)
32 TIGR02350 prok_dnaK chaperone 98.8 1.3E-08 2.8E-13 92.7 9.0 166 3-203 184-372 (595)
33 PTZ00400 DnaK-type molecular c 98.8 2.1E-08 4.5E-13 92.2 10.0 166 3-203 227-415 (663)
34 PTZ00186 heat shock 70 kDa pre 98.8 1.6E-08 3.4E-13 92.5 8.9 170 3-203 213-401 (657)
35 PLN03184 chloroplast Hsp70; Pr 98.8 1.2E-08 2.5E-13 93.9 7.9 166 3-203 225-413 (673)
36 TIGR01991 HscA Fe-S protein as 98.8 2.4E-08 5.2E-13 90.8 9.7 167 4-203 183-360 (599)
37 PRK05183 hscA chaperone protei 98.7 3.6E-08 7.8E-13 89.9 8.5 164 4-203 203-376 (616)
38 PRK13411 molecular chaperone D 98.7 3.7E-08 7.9E-13 90.4 8.5 167 4-203 188-376 (653)
39 PTZ00009 heat shock 70 kDa pro 98.7 4.7E-08 1E-12 89.8 7.6 167 3-203 195-381 (653)
40 PRK13410 molecular chaperone D 98.7 6.4E-08 1.4E-12 88.9 8.2 166 3-203 188-376 (668)
41 TIGR01175 pilM type IV pilus a 98.6 2.4E-07 5.3E-12 78.8 10.1 118 4-172 190-307 (348)
42 PF00012 HSP70: Hsp70 protein; 98.6 1.4E-07 3.1E-12 86.0 7.0 168 3-203 189-376 (602)
43 PF11104 PilM_2: Type IV pilus 98.6 9E-07 2E-11 75.2 11.4 118 4-172 182-299 (340)
44 PRK13917 plasmid segregation p 98.4 2.7E-06 5.9E-11 72.4 10.7 47 4-50 187-233 (344)
45 PRK11678 putative chaperone; P 98.4 1.7E-06 3.8E-11 75.9 9.0 62 128-202 385-446 (450)
46 COG4972 PilM Tfp pilus assembl 98.1 2.8E-05 6.1E-10 64.2 9.4 118 4-172 195-312 (354)
47 TIGR03739 PRTRC_D PRTRC system 98.0 9.4E-06 2E-10 68.4 5.9 47 4-50 169-215 (320)
48 COG0443 DnaK Molecular chapero 97.8 0.00012 2.6E-09 66.5 8.3 167 3-203 173-357 (579)
49 TIGR00241 CoA_E_activ CoA-subs 97.7 0.00014 2.9E-09 59.2 7.5 43 150-200 206-248 (248)
50 COG4820 EutJ Ethanolamine util 97.6 0.0001 2.3E-09 56.9 4.5 130 2-198 140-269 (277)
51 PF06406 StbA: StbA protein; 97.3 0.00018 4E-09 60.6 3.0 48 3-50 165-213 (318)
52 KOG0100|consensus 96.6 0.019 4.2E-07 49.2 9.4 46 4-49 227-275 (663)
53 TIGR03286 methan_mark_15 putat 96.1 0.0033 7.2E-08 54.1 2.4 48 147-202 355-402 (404)
54 KOG0101|consensus 96.1 0.032 7E-07 50.5 8.6 168 5-203 200-383 (620)
55 TIGR03192 benz_CoA_bzdQ benzoy 95.8 0.0057 1.2E-07 50.6 2.3 49 146-202 238-287 (293)
56 TIGR02261 benz_CoA_red_D benzo 95.5 0.014 3.1E-07 47.5 3.4 50 149-201 213-262 (262)
57 COG1924 Activator of 2-hydroxy 95.3 0.015 3.1E-07 49.4 2.9 44 151-202 346-389 (396)
58 PF14450 FtsA: Cell division p 95.3 0.11 2.4E-06 37.2 7.1 58 5-73 2-70 (120)
59 TIGR02259 benz_CoA_red_A benzo 95.1 0.025 5.5E-07 48.6 3.7 52 147-201 381-432 (432)
60 PRK10719 eutA reactivating fac 94.9 0.014 3E-07 51.2 1.8 50 3-54 147-207 (475)
61 PRK13317 pantothenate kinase; 94.8 0.041 9E-07 45.4 4.2 51 147-202 222-273 (277)
62 PF02541 Ppx-GppA: Ppx/GppA ph 93.5 0.16 3.5E-06 42.0 5.2 40 2-43 112-151 (285)
63 KOG0104|consensus 92.0 2.1 4.5E-05 39.9 10.3 45 5-49 218-275 (902)
64 PF01968 Hydantoinase_A: Hydan 91.7 0.18 4E-06 41.9 3.3 23 3-25 78-100 (290)
65 KOG0103|consensus 91.5 1.3 2.9E-05 40.7 8.6 46 4-50 198-247 (727)
66 TIGR03123 one_C_unchar_1 proba 89.1 0.37 8.1E-06 40.5 3.0 25 3-27 129-153 (318)
67 PRK11031 guanosine pentaphosph 88.9 0.61 1.3E-05 41.9 4.4 38 3-42 133-170 (496)
68 KOG0102|consensus 88.7 1.7 3.7E-05 39.0 6.7 144 4-169 214-375 (640)
69 PF06277 EutA: Ethanolamine ut 87.8 0.63 1.4E-05 41.1 3.6 48 5-54 146-204 (473)
70 PF01869 BcrAD_BadFG: BadF/Bad 87.4 0.073 1.6E-06 43.7 -2.3 48 151-201 224-271 (271)
71 TIGR03706 exo_poly_only exopol 86.5 0.64 1.4E-05 38.9 2.9 39 3-43 126-164 (300)
72 COG1548 Predicted transcriptio 86.2 0.52 1.1E-05 38.2 2.1 21 3-23 131-151 (330)
73 PF08841 DDR: Diol dehydratase 83.5 3 6.6E-05 34.4 5.3 54 5-69 137-191 (332)
74 PRK10854 exopolyphosphatase; P 82.7 1.3 2.9E-05 39.9 3.4 37 3-41 138-174 (513)
75 COG0248 GppA Exopolyphosphatas 80.2 1.2 2.5E-05 40.0 2.1 39 3-43 130-168 (492)
76 COG2441 Predicted butyrate kin 75.5 5.7 0.00012 32.8 4.5 45 5-49 166-214 (374)
77 PF03702 UPF0075: Uncharacteri 71.6 2.8 6E-05 36.1 2.0 25 148-172 285-309 (364)
78 PRK05082 N-acetylmannosamine k 70.8 8.4 0.00018 31.8 4.7 50 151-201 237-286 (291)
79 PF02782 FGGY_C: FGGY family o 64.8 6.2 0.00013 30.3 2.6 47 148-203 150-196 (198)
80 PRK13310 N-acetyl-D-glucosamin 63.6 13 0.00028 30.8 4.5 51 151-201 249-300 (303)
81 TIGR00555 panK_eukar pantothen 61.5 10 0.00023 31.3 3.5 68 127-199 209-278 (279)
82 COG4962 CpaF Flp pilus assembl 61.4 66 0.0014 27.6 8.2 78 92-178 113-200 (355)
83 PRK09557 fructokinase; Reviewe 61.0 16 0.00035 30.2 4.7 50 151-200 248-298 (301)
84 COG0278 Glutaredoxin-related p 59.0 29 0.00063 24.0 4.6 57 151-212 18-78 (105)
85 PRK09698 D-allose kinase; Prov 58.6 25 0.00055 29.0 5.4 51 151-201 240-294 (302)
86 COG4819 EutA Ethanolamine util 58.0 18 0.00039 30.8 4.2 68 5-74 148-237 (473)
87 smart00732 YqgFc Likely ribonu 55.1 38 0.00081 22.6 5.0 46 4-49 3-49 (99)
88 PRK09585 anmK anhydro-N-acetyl 54.4 11 0.00024 32.5 2.5 22 150-171 289-310 (365)
89 PTZ00340 O-sialoglycoprotein e 54.2 9.1 0.0002 32.7 2.0 50 148-202 264-319 (345)
90 PF09693 Phage_XkdX: Phage unc 50.7 8 0.00017 21.8 0.8 10 210-219 26-35 (40)
91 PRK15027 xylulokinase; Provisi 46.9 22 0.00047 31.8 3.4 48 148-203 387-434 (484)
92 COG0533 QRI7 Metal-dependent p 46.7 17 0.00038 30.9 2.5 50 148-202 262-317 (342)
93 TIGR01669 phage_XkdX phage unc 46.4 10 0.00022 22.0 0.8 15 205-219 25-40 (45)
94 TIGR01312 XylB D-xylulose kina 46.2 34 0.00073 30.4 4.5 47 148-203 391-437 (481)
95 COG0145 HyuA N-methylhydantoin 46.2 19 0.0004 33.8 2.8 22 4-25 280-301 (674)
96 TIGR03286 methan_mark_15 putat 45.8 41 0.00089 29.5 4.7 45 7-51 149-193 (404)
97 PRK14878 UGMP family protein; 45.6 26 0.00057 29.6 3.5 34 149-187 243-276 (323)
98 TIGR01319 glmL_fam conserved h 45.1 12 0.00026 33.2 1.4 21 5-25 252-272 (463)
99 PF08735 DUF1786: Putative pyr 44.9 66 0.0014 26.3 5.5 23 3-25 168-190 (254)
100 PF13941 MutL: MutL protein 44.7 11 0.00024 33.5 1.1 26 4-29 250-275 (457)
101 KOG2708|consensus 44.1 61 0.0013 26.2 5.0 56 127-189 233-291 (336)
102 PRK00976 hypothetical protein; 43.8 34 0.00074 29.0 3.8 43 150-202 266-310 (326)
103 TIGR00744 ROK_glcA_fam ROK fam 42.7 42 0.0009 27.9 4.3 51 151-201 255-308 (318)
104 PF03727 Hexokinase_2: Hexokin 41.5 34 0.00074 27.6 3.5 42 159-203 198-240 (243)
105 TIGR03722 arch_KAE1 universal 40.1 27 0.00058 29.5 2.7 34 149-187 244-277 (322)
106 TIGR03192 benz_CoA_bzdQ benzoy 38.8 75 0.0016 26.6 5.1 45 6-52 36-83 (293)
107 PTZ00294 glycerol kinase-like 38.4 51 0.0011 29.7 4.4 46 148-202 407-452 (504)
108 TIGR00103 DNA_YbaB_EbfC DNA-bi 38.3 6.6 0.00014 27.2 -1.0 49 113-163 54-102 (102)
109 PF00370 FGGY_N: FGGY family o 37.0 40 0.00086 26.9 3.2 29 5-33 3-32 (245)
110 PRK13318 pantothenate kinase; 35.7 1.3E+02 0.0028 24.4 6.0 47 5-51 3-51 (258)
111 PRK13321 pantothenate kinase; 34.7 1.5E+02 0.0032 24.1 6.2 47 5-51 3-51 (256)
112 TIGR01234 L-ribulokinase L-rib 34.5 80 0.0017 28.7 5.0 46 149-203 437-483 (536)
113 TIGR01311 glycerol_kin glycero 34.5 68 0.0015 28.7 4.6 47 148-203 400-446 (493)
114 PF14824 Sirohm_synth_M: Siroh 34.4 42 0.00092 17.6 1.9 22 151-174 8-29 (30)
115 COG4012 Uncharacterized protei 34.4 85 0.0018 26.0 4.5 23 3-25 228-250 (342)
116 COG3967 DltE Short-chain dehyd 33.9 29 0.00063 27.6 1.8 20 149-168 5-26 (245)
117 PF07520 SrfB: Virulence facto 33.3 49 0.0011 32.4 3.5 65 151-216 770-849 (1002)
118 TIGR00329 gcp_kae1 metallohydr 33.3 41 0.00088 28.2 2.8 34 149-187 260-293 (305)
119 PRK10331 L-fuculokinase; Provi 33.0 69 0.0015 28.5 4.3 47 148-203 390-436 (470)
120 PRK04123 ribulokinase; Provisi 32.1 90 0.002 28.4 5.0 46 149-203 440-486 (548)
121 PF07318 DUF1464: Protein of u 31.5 72 0.0016 27.3 3.9 48 151-202 264-314 (343)
122 PF07318 DUF1464: Protein of u 30.9 56 0.0012 28.0 3.1 46 3-48 155-204 (343)
123 COG4012 Uncharacterized protei 29.3 1.3E+02 0.0027 25.0 4.7 43 4-47 3-45 (342)
124 PRK00047 glpK glycerol kinase; 29.2 97 0.0021 27.8 4.6 47 148-203 404-450 (498)
125 TIGR00177 molyb_syn molybdenum 29.1 36 0.00078 24.9 1.6 37 127-174 55-91 (144)
126 PLN02295 glycerol kinase 29.0 77 0.0017 28.6 4.0 47 148-203 413-459 (512)
127 KOG2960|consensus 28.8 37 0.0008 27.2 1.6 79 142-225 70-153 (328)
128 TIGR02628 fuculo_kin_coli L-fu 28.8 86 0.0019 27.8 4.2 48 148-204 394-441 (465)
129 TIGR01314 gntK_FGGY gluconate 28.1 1E+02 0.0022 27.7 4.6 47 148-203 402-448 (505)
130 PRK14623 hypothetical protein; 27.2 50 0.0011 23.1 1.9 47 116-166 53-104 (106)
131 TIGR00744 ROK_glcA_fam ROK fam 26.9 1.4E+02 0.003 24.7 5.0 25 5-29 1-26 (318)
132 TIGR01315 5C_CHO_kinase FGGY-f 26.5 84 0.0018 28.6 3.8 47 148-203 444-490 (541)
133 PF01869 BcrAD_BadFG: BadF/Bad 26.2 1.3E+02 0.0028 24.4 4.5 21 7-27 3-24 (271)
134 PRK10939 autoinducer-2 (AI-2) 26.1 66 0.0014 29.1 3.0 47 148-203 410-456 (520)
135 PF12401 DUF3662: Protein of u 26.1 9.2 0.0002 27.2 -2.0 47 176-223 52-98 (116)
136 PLN02669 xylulokinase 25.0 64 0.0014 29.6 2.7 46 149-203 447-492 (556)
137 KOG0683|consensus 24.8 93 0.002 26.8 3.4 74 141-225 185-278 (380)
138 PLN02666 5-oxoprolinase 24.1 71 0.0015 32.5 3.0 19 4-23 316-334 (1275)
139 TIGR03281 methan_mark_12 putat 23.8 1E+02 0.0022 26.0 3.4 43 150-202 265-310 (326)
140 cd00758 MoCF_BD MoCF_BD: molyb 23.7 53 0.0011 23.6 1.6 9 151-159 62-70 (133)
141 PRK14625 hypothetical protein; 23.3 54 0.0012 23.0 1.5 36 126-164 65-105 (109)
142 TIGR00241 CoA_E_activ CoA-subs 23.1 2E+02 0.0044 23.0 5.1 44 6-49 4-47 (248)
143 PRK00292 glk glucokinase; Prov 23.0 1.5E+02 0.0033 24.7 4.5 47 1-49 1-50 (316)
144 KOG1794|consensus 23.0 1.7E+02 0.0036 24.7 4.4 72 127-202 243-315 (336)
145 COG4457 SrfB Uncharacterized p 22.2 94 0.002 29.3 3.1 36 127-169 765-800 (1014)
146 PF08260 Kinin: Insect kinin p 22.2 40 0.00086 12.0 0.3 6 189-194 2-7 (8)
147 PRK03011 butyrate kinase; Prov 22.0 1.1E+02 0.0023 26.4 3.4 44 149-196 297-340 (358)
148 KOG3445|consensus 21.5 1.1E+02 0.0025 22.4 2.8 31 155-187 34-64 (145)
149 COG1940 NagC Transcriptional r 21.3 2.3E+02 0.0049 23.5 5.2 48 2-49 6-60 (314)
150 TIGR02261 benz_CoA_red_D benzo 20.9 2E+02 0.0044 23.6 4.6 45 7-51 6-56 (262)
151 KOG1385|consensus 20.6 84 0.0018 27.7 2.4 16 2-17 213-228 (453)
152 COG1940 NagC Transcriptional r 20.3 2E+02 0.0044 23.8 4.7 53 151-203 251-307 (314)
153 PTZ00452 actin; Provisional 20.2 83 0.0018 27.2 2.4 19 1-19 4-22 (375)
154 PRK05082 N-acetylmannosamine k 20.1 3.1E+02 0.0066 22.4 5.7 47 3-49 2-51 (291)
No 1
>PTZ00452 actin; Provisional
Probab=100.00 E-value=3.5e-66 Score=441.78 Aligned_cols=228 Identities=50% Similarity=0.900 Sum_probs=215.1
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||+|||+|++.|+|+||+||+++++++.++++||+++|++|+++|.++++++....+.+++++|||++|||+.++.+++
T Consensus 148 ~tglVVDiG~~~t~v~PV~dG~~l~~~~~r~~~gG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~ 227 (375)
T PTZ00452 148 TIGLVVDSGEGVTHCVPVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDPQDEK 227 (375)
T ss_pred ceeeeecCCCCcceEEEEECCEEeccceEEeeccchHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccccCcHHHHH
Confidence 69999999999999999999999999999999999999999999999988888777788899999999999999988776
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCcc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYP 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~ 161 (229)
..........+.|+||||+.|.++.|||.+||+||+|++++.+..||+++|.++|.+||+|+|++|++||+|+||+|++|
T Consensus 228 ~~~~~~~~~~~~y~LPDg~~i~l~~er~~~~E~LF~P~~~g~~~~gi~~~i~~si~~c~~d~r~~L~~nIvL~GG~Sl~~ 307 (375)
T PTZ00452 228 RIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIKKCDLDLRQELCRNIVLSGGTTLFP 307 (375)
T ss_pred HHhhccCCcCceEECCCCCEEEeehHHhcCcccccChhhcCCCCCChhHHHHHHHHhCCHhHHHHhhccEEEeccccccc
Confidence 54333334467899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 162 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
||.+||++||+.+.|...+++|.++++|++++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 308 Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~vtk~eYeE~G~~i~~~k~~ 375 (375)
T PTZ00452 308 GIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGGSIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375 (375)
T ss_pred CHHHHHHHHHHHhCCCCceeEEecCCCcceeEEECchhhcCccchhhhEeEHHHHhccCcceeeeecC
Confidence 99999999999999988899999999999999999999999999999999999999999999999997
No 2
>KOG0676|consensus
Probab=100.00 E-value=1.6e-66 Score=432.86 Aligned_cols=228 Identities=75% Similarity=1.182 Sum_probs=218.3
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||||||+|++.|+++|||||+++++++.++++||+++|+||+..|.++++++....++++++++||++||++.|+++++
T Consensus 145 ttG~VvD~G~gvt~~vPI~eG~~lp~ai~~ldl~G~dlt~~l~~~L~~~g~s~~~~~~~eIv~diKeklCyvald~~~e~ 224 (372)
T KOG0676|consen 145 TTGLVVDSGDGVTHVVPIYEGYALPHAILRLDLAGRDLTDYLLKQLRKRGYSFTTSAEFEIVRDIKEKLCYVALDFEEEE 224 (372)
T ss_pred eeEEEEEcCCCceeeeecccccccchhhheecccchhhHHHHHHHHHhcccccccccHHHHHHHhHhhhcccccccchhh
Confidence 69999999999999999999999999999999999999999999999999889888999999999999999999999888
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCcc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYP 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~ 161 (229)
............|+||||+.+.++++||.+||+||+|+..|.+..+|++++.+||.+||+|+|++|++||+|+||+|++|
T Consensus 225 ~~~~~~~~l~~~y~lPDg~~i~i~~erf~~pE~lFqP~~~g~e~~gi~~~~~~sI~kcd~dlrk~L~~nivLsGGtT~~p 304 (372)
T KOG0676|consen 225 ETANTSSSLESSYELPDGQKITIGNERFRCPEVLFQPSLLGMESPGIHELTVNSIMKCDIDLRKDLYENIVLSGGTTMFP 304 (372)
T ss_pred hcccccccccccccCCCCCEEecCCcccccchhcCChhhcCCCCCchhHHHHHHHHhCChhHhHHHHhheEEeCCcccch
Confidence 76333445566799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 162 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
||.+||++||+.+.|++.+++|+++|+|.+++|+||||+||+++|+++||||+||+|.|++++|||||
T Consensus 305 Gl~~Rl~kEl~~l~P~~~~ikv~~pp~r~~s~WlGgSIlaslstfq~~witk~eY~e~g~~~~~rk~f 372 (372)
T KOG0676|consen 305 GLADRLQKELQALAPSTIKIKVIAPPERKYSAWLGGSILASLSTFQQMWITKEEYEEHGPSIIHRKCF 372 (372)
T ss_pred hHHHHHHHHHhhcCCCCcceEEecCcccccceecCceeEeecchHhhccccHHHHhhhCCceeeeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=8.4e-65 Score=433.71 Aligned_cols=227 Identities=46% Similarity=0.796 Sum_probs=214.0
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||+|||+|++.|+|+||+||+++.+++.++++||+++|++|+++|.++++.+++..+.++++++||++|||+.|+..++
T Consensus 154 ~tglVVD~G~~~t~v~PV~~G~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~v~~iKe~~c~v~~d~~~e~ 233 (380)
T PTZ00466 154 TNGTVLDCGDGVCHCVSIYEGYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEK 233 (380)
T ss_pred ceEEEEeCCCCceEEEEEECCEEeecceeEecCchhHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCeEecCChHHHH
Confidence 69999999999999999999999999999999999999999999999988878777888999999999999999987766
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCcc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYP 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~ 161 (229)
+.. ........|+||||+.|.++.|||++||+||+|+++|.+..||+++|.+||.+||+|.|++|++||+|+||+|++|
T Consensus 234 ~~~-~~~~~~~~y~LPdg~~i~l~~er~~~~E~LF~P~~~g~~~~gl~~~i~~sI~~c~~d~r~~L~~nIvL~GG~Sl~~ 312 (380)
T PTZ00466 234 NSS-EKALTTLPYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRADMDLRRTLYSHIVLSGGTTMFH 312 (380)
T ss_pred hhc-cccccceeEECCCCcEEEEchHHhcCcccccCccccCCCCCCHHHHHHHHHHhCChhhHHHHhhcEEEeCCccccC
Confidence 532 2223357899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 162 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
||.+||++||+.+.|...+++|..+++|++++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 313 Gf~~RL~~EL~~l~p~~~~v~v~~~~~r~~~aW~GgSilasl~~f~~~~itk~eYeE~G~~iv~rk~~ 380 (380)
T PTZ00466 313 GFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSILASLATFKKIWISKQEFDEYGSVILHRKTF 380 (380)
T ss_pred CHHHHHHHHHHHhCCCCceEEEecCCCCceeEEECchhhcCccchhhhEeEHHHHhhhCcHhheeecC
Confidence 99999999999999988899999999999999999999999999999999999999999999999997
No 4
>PTZ00281 actin; Provisional
Probab=100.00 E-value=1.3e-64 Score=432.95 Aligned_cols=228 Identities=85% Similarity=1.276 Sum_probs=215.1
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||||||+|++.|+|+||+||+++.++++++++||+++|++|+++|.++++++....+.+++++|||++|||+.+++.++
T Consensus 149 ~tglVVDiG~~~t~v~PV~dG~~~~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~ 228 (376)
T PTZ00281 149 TTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVALDFEAEM 228 (376)
T ss_pred ceEEEEECCCceEEEEEEEecccchhheeeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHhcEEecCCchHHH
Confidence 69999999999999999999999999999999999999999999999988888777788999999999999998887776
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCcc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYP 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~ 161 (229)
+.........+.|+||||+.|.++.|||.+||+||+|+..+.+..+|+++|.++|.+||+|+|++|++||+|+||+|++|
T Consensus 229 ~~~~~~~~~~~~y~LPdg~~i~i~~er~~~~E~LF~P~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~~~ 308 (376)
T PTZ00281 229 QTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYNSIMKCDVDIRKDLYGNVVLSGGTTMFP 308 (376)
T ss_pred HhhhcCcccceeEECCCCCEEEeeHHHeeCcccccChhhcCCCCCCHHHHHHHHHHhCChhHHHHHHhhccccCccccCc
Confidence 64433334567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 162 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
||.+||++||+.+.|...+++|+.+++|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 309 Gf~~RL~~El~~~~p~~~~v~v~~~~~r~~~aW~Ggsilasl~~f~~~~vtk~eY~E~G~~~~~~k~~ 376 (376)
T PTZ00281 309 GIADRMNKELTALAPSTMKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376 (376)
T ss_pred CHHHHHHHHHHHhCCCCcceEEecCCCCceeEEECcccccCcccHhhceeeHHHHhhhCchheeeecC
Confidence 99999999999999988899999999999999999999999999999999999999999999999997
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=4.5e-63 Score=423.90 Aligned_cols=228 Identities=68% Similarity=1.147 Sum_probs=213.5
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||+|||+|++.|+|+||+||+++.+++.++++||++++++|+++|.++++.+....+.++++++||++|||+.|+++++
T Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~~~ 228 (378)
T PTZ00004 149 TTGIVLDSGDGVSHTVPIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDFDEEM 228 (378)
T ss_pred ceEEEEECCCCcEEEEEEECCEEeecceeeecccHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHhhcceeecCCHHHHH
Confidence 69999999999999999999999999999999999999999999999988777777778899999999999999998876
Q ss_pred HHhhcCC-CCcceEeCCCCceeeecCccccccccccCCCCCCCC-CCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCC
Q psy2717 82 ATAAAST-SLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTM 159 (229)
Q Consensus 82 ~~~~~~~-~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~ 159 (229)
....... .....|+||||+.+.++.+||.+||+||+|+.++.+ ..||+++|.+||.+||+|+|+.|++||+|+||+|+
T Consensus 229 ~~~~~~~~~~~~~y~lPdg~~i~l~~er~~~~E~LF~P~~~~~~~~~gi~~~i~~sI~~~~~d~r~~L~~nIvl~GG~s~ 308 (378)
T PTZ00004 229 GNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQSINKCDIDIRKDLYGNIVLSGGTTM 308 (378)
T ss_pred hhhhcCccccceEEECCCCCEEEEcHHHeeCcccccChhhcCccccCChHHHHHHHHHhCChhHHHHHHhhEEeccchhc
Confidence 5432221 235789999999999999999999999999998888 89999999999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 160 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 160 i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
+|||.+||++||+.+.|...+++|..+++|.+++|+||||+|++++|+++||||+||+|+|+++++||||
T Consensus 309 ~~Gf~~RL~~EL~~~~p~~~~~~v~~~~~~~~~aW~Ggsilas~~~f~~~~vtk~eYeE~G~~~~~rk~~ 378 (378)
T PTZ00004 309 YRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWIGGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378 (378)
T ss_pred CcCHHHHHHHHHHHhCCCCccEEEecCCCCceeEEECcccccCccchhhhEeEHHHHhhhCcceEEeecC
Confidence 9999999999999999988889999999999999999999999999999999999999999999999997
No 6
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=7.5e-59 Score=400.69 Aligned_cols=227 Identities=49% Similarity=0.938 Sum_probs=199.4
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCC-----------------CCchhHHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYS-----------------FTTTAEREIVR 64 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~-----------------~~~~~~~~~~~ 64 (229)
+||||||+|++.|+|+||+||+++.++++++++||++++++|+++|.+++.. +....+..+++
T Consensus 142 ~tglVVD~G~~~t~v~pV~dG~~~~~~~~~~~~GG~~lt~~l~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (393)
T PF00022_consen 142 TTGLVVDIGYSSTSVVPVVDGYVLPHSIKRSPIGGDDLTEYLKELLKERNIQINPSYLIKSKSPVEGESYNNSDDEEIVE 221 (393)
T ss_dssp SSEEEEEESSS-EEEEEEETTEE-GGGBEEES-SHHHHHHHHHHHHHHT-SS--GCCCCCCHCCC-TCHHSSHHHHHHHH
T ss_pred ccccccccceeeeeeeeeeeccccccccccccccHHHHHHHHHHHHHhhccccccccccccccccccccccchhhhccch
Confidence 6899999999999999999999999999999999999999999999997322 22345678899
Q ss_pred HHHHhcccccccHHHHHHHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCC-------CHHHHHHHHHh
Q psy2717 65 DIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC-------GIHETVYNSIM 137 (229)
Q Consensus 65 ~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~-------~l~~~I~~si~ 137 (229)
++|+++|+++.++..... ..........|+||||+.+.++.+|+.+||+||+|...+.+.. +|+++|.++|+
T Consensus 222 ~ik~~~~~v~~~~~~~~~-~~~~~~~~~~~~lPdg~~i~~~~er~~~~E~LF~p~~~~~~~~~~~~~~~gL~~~I~~si~ 300 (393)
T PF00022_consen 222 EIKEECCYVSEDPDEEQE-EQASENPEKSYELPDGQTIILGKERFRIPEILFNPSLIGIDSASEPSEFMGLPELILDSIS 300 (393)
T ss_dssp HHHHHHHSGGSSHHHHHH-HHHCSTTTEEEE-TTSSEEEESTHHHHHHHTTTSGGGGTSSSTS---SSSCHHHHHHHHHH
T ss_pred hccchhhhcccccccccc-cccccccceecccccccccccccccccccccccccccccccccccccccchhhhhhhhhhh
Confidence 999999999988764111 1122355788999999999999999999999999998877765 99999999999
Q ss_pred cCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC-CCccceehhhhHhhcccccccccccHHHH
Q psy2717 138 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP-ERKYSVWIGGSILASLSTFQQMWISKQEY 216 (229)
Q Consensus 138 ~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~-~~~~~~w~Ggsila~l~~~~~~~Itr~ey 216 (229)
+||+|.|++|++||+||||+|++|||.+||++||+.+.|...+++|+.++ +|.+++|+||||+|++++|+++||||+||
T Consensus 301 ~~~~d~r~~l~~nIvl~GG~S~i~G~~eRL~~eL~~~~~~~~~~~v~~~~~~~~~~aW~Ggsilasl~~f~~~~itr~eY 380 (393)
T PF00022_consen 301 KCPIDLRKELLSNIVLTGGSSLIPGFKERLQQELRSLLPSSTKVKVIAPPSDRQFAAWIGGSILASLSSFQSFWITREEY 380 (393)
T ss_dssp TSTTTTHHHHHTTEEEESGGGGSTTHHHHHHHHHHHHSGTTSTEEEE--T-TTTSHHHHHHHHHHTSGGGGGTSEEHHHH
T ss_pred ccccccccccccceEEecccccccchHHHHHHHhhhhhhccccceeccCchhhhhcccccceeeeccccccceeeeHHHH
Confidence 99999999999999999999999999999999999999888899999998 99999999999999999999999999999
Q ss_pred hhcCccchhhccC
Q psy2717 217 DESGPGIVHRKCF 229 (229)
Q Consensus 217 ~e~G~~~~~~k~~ 229 (229)
+|+|+++++||||
T Consensus 381 eE~G~~~i~rkc~ 393 (393)
T PF00022_consen 381 EEYGPSIIHRKCF 393 (393)
T ss_dssp HHHGGGGHHHHT-
T ss_pred hCcCcceeeecCC
Confidence 9999999999997
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=4.6e-58 Score=397.40 Aligned_cols=226 Identities=34% Similarity=0.621 Sum_probs=203.0
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||||||+|++.|+|+||+||++++++++++++||+++|++|+++|.+++.++......++++++||++||++.++.+++
T Consensus 160 ~tglVVDiG~~~T~i~PV~~G~~l~~~~~~~~~GG~~lt~~L~~lL~~~~~~~~~~~~~~~~~~iKe~~c~v~~d~~~e~ 239 (414)
T PTZ00280 160 LTGTVIDSGDGVTHVIPVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDIAKEF 239 (414)
T ss_pred eeEEEEECCCCceEEEEEECCEEcccceEEecCcHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHhcCcccCcHHHHH
Confidence 58999999999999999999999999999999999999999999999988777666678899999999999999988777
Q ss_pred HHhhc-CCCCcceEeCCC---Cc--eeeecCccccccccccCCCCCCCC-CCCHHHHHHHHHhcCCHHHHHHhhcCeEEe
Q psy2717 82 ATAAA-STSLEKSYELPD---GQ--VITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVLS 154 (229)
Q Consensus 82 ~~~~~-~~~~~~~~~lpd---g~--~i~~~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~si~~~~~d~r~~l~~nIilt 154 (229)
..... +......|++|| |+ .+.++.+||.+||+||+|+.++.+ ..+|+++|.++|++||+|+|++|++||+|+
T Consensus 240 ~~~~~~~~~~~~~~~~~d~~~g~~~~i~l~~erf~~~E~LF~P~~~~~~~~~gl~e~i~~sI~~~~~d~r~~L~~nIvL~ 319 (414)
T PTZ00280 240 EKYDSDPKNHFKKYTAVNSVTKKPYTVDVGYERFLGPEMFFHPEIFSSEWTTPLPEVVDDAIQSCPIDCRRPLYKNIVLS 319 (414)
T ss_pred HHhhcCcccccceEECCCCCCCCccEEEechHHhcCcccccChhhcCCccCCCHHHHHHHHHHhCChhhHHHHhhcEEEe
Confidence 64322 122345788887 33 789999999999999999987654 459999999999999999999999999999
Q ss_pred cCCCCccchHHHHHHHHHhhC----------------CCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhh
Q psy2717 155 GGTTMYPGIADRMQKEITALA----------------PSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDE 218 (229)
Q Consensus 155 GG~s~i~Gl~~RL~~el~~~~----------------~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e 218 (229)
||+|++|||.+||++||+.++ |...+++|..+++|.+++|+||||+|++++|+++||||+||+|
T Consensus 320 GG~s~~~Gf~eRL~~El~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~W~GgSilas~~~f~~~~itk~eY~E 399 (414)
T PTZ00280 320 GGSTMFKGFDKRLQRDVRKRVDRRLKKAEELSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDE 399 (414)
T ss_pred CCcccCcCHHHHHHHHHHHhccccccccccccccccCCCCceEEEecCCccceeEEEChhhcccCcchhhheEEHHHHhc
Confidence 999999999999999999986 3456789999999999999999999999999999999999999
Q ss_pred cCccchhhc
Q psy2717 219 SGPGIVHRK 227 (229)
Q Consensus 219 ~G~~~~~~k 227 (229)
+|+++++|+
T Consensus 400 ~G~~i~~~~ 408 (414)
T PTZ00280 400 YGPSICRYN 408 (414)
T ss_pred cChHheeec
Confidence 999999987
No 8
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=9.9e-58 Score=391.16 Aligned_cols=228 Identities=62% Similarity=1.071 Sum_probs=212.0
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
.||+|||||++.|+|+||+||+++.++++++++||++++++|+++|++++..++...+.++++++|+++|+++.++.+++
T Consensus 143 ~~~lVVDiG~~~t~v~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~ 222 (373)
T smart00268 143 TTGLVIDSGDGVTHVVPVVDGYVLPHAIKRIDIAGRDLTDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKEM 222 (373)
T ss_pred CEEEEEecCCCcceEEEEECCEEchhhheeccCcHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhhhheeeecCChHHHH
Confidence 68999999999999999999999999999999999999999999999876666666778899999999999999887776
Q ss_pred HHhhc---CCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCC
Q psy2717 82 ATAAA---STSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTT 158 (229)
Q Consensus 82 ~~~~~---~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s 158 (229)
..... .......|++|||+.+.++.+|+.+||+||+|+..+.+..+|+++|.++|++||+|+|++|++||+||||+|
T Consensus 223 ~~~~~~~~~~~~~~~~~lpdg~~~~~~~er~~~~E~lf~p~~~~~~~~~i~~~i~~~i~~~~~d~r~~l~~nIvltGG~s 302 (373)
T smart00268 223 KKARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFKPELIGLEQKGIHELVYESIQKCDIDVRKDLYENIVLSGGST 302 (373)
T ss_pred HHhhhcccccccceeEECCCCCEEEEChHHeeCchhcCCchhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCeEeecccc
Confidence 54321 234457899999999999999999999999999999889999999999999999999999999999999999
Q ss_pred CccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 159 MYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 159 ~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
++|||.+||++||+.+.|...++++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||||
T Consensus 303 ~i~Gl~~RL~~el~~~~p~~~~v~v~~~~~~~~~~W~G~silas~~~f~~~~vtk~eY~E~G~~i~~~k~~ 373 (373)
T smart00268 303 LIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGGSILASLSTFEDMWITKKEYEEHGSQIVERKCF 373 (373)
T ss_pred cCcCHHHHHHHHHHHhCCCCceeEEecCCCCccceEeCcccccCccchhhhEEEHHHHhhhCcceEEeecC
Confidence 99999999999999999987889999899999999999999999999999999999999999999999998
No 9
>KOG0679|consensus
Probab=100.00 E-value=3.6e-55 Score=356.89 Aligned_cols=223 Identities=39% Similarity=0.691 Sum_probs=192.5
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCc-------------------------
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTT------------------------- 56 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~------------------------- 56 (229)
.||||||||++.|+|+||+||+++.+++++.++||++|+..++++|...+..+..
T Consensus 154 stalVvDiGa~~~svsPV~DG~Vlqk~vvks~laGdFl~~~~~q~l~~~~iei~P~y~ia~k~~v~~g~~an~~~~~~~~ 233 (426)
T KOG0679|consen 154 STALVVDIGATHTSVSPVHDGYVLQKGVVKSPLAGDFLNDQCRQLLEPKNIEIIPMYNIASKEPVREGYPANAVLRVSIP 233 (426)
T ss_pred CceEEEEecCCCceeeeeecceEeeeeeEecccchHHHHHHHHHHHhhcCcccCcHHHhhhcccccccCcchhhhcCChh
Confidence 4899999999999999999999999999999999999999999999887643221
Q ss_pred --------hhHHHHHHHHHHhcccccccHHHHHHHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCC------
Q psy2717 57 --------TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLG------ 122 (229)
Q Consensus 57 --------~~~~~~~~~iK~~~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~------ 122 (229)
.....++++.|+.++.++...-++-. ......++|++|||++.++|.+||++||.||+|+.+.
T Consensus 234 d~tes~~~y~~~~v~~e~ke~v~qv~dtp~de~~---~~~i~~~~~efP~g~~~~~G~er~ripe~lF~Ps~v~~~s~~~ 310 (426)
T KOG0679|consen 234 DLTESYHNYMEQRVYQEFKESVLQVSDTPFDEEV---AAQIPTKHFEFPDGYTLDFGAERFRIPEYLFKPSLVKSSSKEA 310 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccc---cccCCCccccCCCCcccccCcceeecchhhcCcchhccccccc
Confidence 01233566777777766533221111 1225578999999999999999999999999998642
Q ss_pred ------CCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC---CCccce
Q psy2717 123 ------MESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSV 193 (229)
Q Consensus 123 ------~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~---~~~~~~ 193 (229)
....|+++++..||..||.|+|..|+.||++|||+|+|+||.+||.+||..+.|.+ ++++++.. +|++++
T Consensus 311 ~~~~~~n~~lG~~~lv~sSi~~cDvdiR~~L~~nVivtGGtSliqG~s~RL~~ELs~~~P~s-rlki~as~~t~eR~~~~ 389 (426)
T KOG0679|consen 311 GATSHINTMLGLPHLVYSSINMCDVDIRSSLLGNVIVTGGTSLIQGFSERLNKELSKRAPSS-RLKIIASGHTVERRFQS 389 (426)
T ss_pred cCCCCCccccCchHHHHhhhccChHHHHHHhhccEEEecCcchhhhHHHHHHHHHHHhCCcc-eEEEEecCceeeehhhh
Confidence 23479999999999999999999999999999999999999999999999999998 99999864 899999
Q ss_pred ehhhhHhhcccccccccccHHHHhhcCc-cchhhcc
Q psy2717 194 WIGGSILASLSTFQQMWISKQEYDESGP-GIVHRKC 228 (229)
Q Consensus 194 w~Ggsila~l~~~~~~~Itr~ey~e~G~-~~~~~k~ 228 (229)
|+||||||||++|+++||+|+||+|.|. +.+.|||
T Consensus 390 WlGGSILASLgtFqq~WiSKqEYEE~G~d~~ve~rc 425 (426)
T KOG0679|consen 390 WLGGSILASLGTFQQLWISKQEYEEVGKDQLVERRC 425 (426)
T ss_pred hhhhHHHhccccHHHHhhhHHHHHHhhhHHHHhhcC
Confidence 9999999999999999999999999999 9999998
No 10
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=2e-54 Score=370.48 Aligned_cols=226 Identities=62% Similarity=1.060 Sum_probs=207.3
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+||||||||++.|+|+||+||+++.+++.++++||++++++++++|++++..++...+.+.++++|+++|+++.++..+.
T Consensus 143 ~~~lVVDiG~~~t~i~pv~~G~~~~~~~~~~~~GG~~l~~~l~~~l~~~~~~~~~~~~~~~~~~iKe~~~~v~~~~~~~~ 222 (371)
T cd00012 143 TTGLVVDSGDGVTHVVPVYDGYVLPHAIKRLDLAGRDLTRYLKELLRERGYELNSSDEREIVRDIKEKLCYVALDIEEEQ 222 (371)
T ss_pred CeEEEEECCCCeeEEEEEECCEEchhhheeccccHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHHhheeecCCHHHHH
Confidence 68999999999999999999999999999999999999999999999987666667778899999999999998887665
Q ss_pred HHh-hcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCc
Q psy2717 82 ATA-AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMY 160 (229)
Q Consensus 82 ~~~-~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i 160 (229)
.+. .........|.||||+.+.++.+||.+||+||+|...+....+|+++|.++|.+||+|.|+.+++||+||||+|++
T Consensus 223 ~~~~~~~~~~~~~~~lpd~~~i~~~~er~~~~E~lF~p~~~~~~~~~i~~~i~~~i~~~~~~~~~~l~~~Ivl~GG~s~~ 302 (371)
T cd00012 223 DKSAKETSLLEKTYELPDGRTIKVGNERFRAPEILFNPSLIGSEQVGISEAIYSSINKCDIDLRKDLYSNIVLSGGSTLF 302 (371)
T ss_pred HhhhccCCccceeEECCCCeEEEEChHHhhChHhcCChhhcCCCcCCHHHHHHHHHHhCCHhHHHHHHhCEEEeCCccCC
Confidence 221 1223446789999999999999999999999999988888899999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhCCC--CCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhc
Q psy2717 161 PGIADRMQKEITALAPS--TIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRK 227 (229)
Q Consensus 161 ~Gl~~RL~~el~~~~~~--~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k 227 (229)
|||.+||++||..+.|. ...+++..+++|.+++|+|||++|++++|+++||||+||+|+|+++++||
T Consensus 303 ~gl~~rl~~el~~~~~~~~~~~~~~~~~~~~~~~aw~G~si~as~~~~~~~~itk~eY~E~G~~~~~~k 371 (371)
T cd00012 303 PGFGERLQKELLKLAPPSKDTKVKVIAPPERKYSVWLGGSILASLSTFQQLWITKEEYEEHGPSIVHRK 371 (371)
T ss_pred cCHHHHHHHHHHHhCCcccceEEEEccCCCccccEEeCchhhcCchhhhheEeeHHHHhhhCchhEecC
Confidence 99999999999999987 55678888889999999999999999999999999999999999999987
No 11
>KOG0677|consensus
Probab=100.00 E-value=9.9e-55 Score=338.93 Aligned_cols=227 Identities=46% Similarity=0.811 Sum_probs=209.1
Q ss_pred CcceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHH
Q psy2717 1 MATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80 (229)
Q Consensus 1 ~~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 80 (229)
+.||+|||-|.+.|+|+|||+|+++++-..+++++|+++|.||.+||..+|+.|+...+++.++++||++||++.|.+.+
T Consensus 148 L~tGvVvDSGDGVTHi~PVye~~~l~HLtrRldvAGRdiTryLi~LLl~rGYafN~tADFETVR~iKEKLCYisYd~e~e 227 (389)
T KOG0677|consen 148 LLTGVVVDSGDGVTHIVPVYEGFVLPHLTRRLDVAGRDITRYLIKLLLRRGYAFNHTADFETVREIKEKLCYISYDLELE 227 (389)
T ss_pred ccceEEEecCCCeeEEeeeecceehhhhhhhccccchhHHHHHHHHHHhhccccccccchHHHHHHHhhheeEeechhhh
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999888777
Q ss_pred HHHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCc
Q psy2717 81 MATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMY 160 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i 160 (229)
.+.+-.......+|+||||+.|.+|.|||.+||+||+|.+++-+.+|++++++.+|+..++|.|.+++++|+|+||+++.
T Consensus 228 ~kLalETTvLv~~YtLPDGRvIkvG~ERFeAPE~LFqP~Li~VE~~G~aellF~~iQaaDiD~R~~lYkhIVLSGGstMY 307 (389)
T KOG0677|consen 228 QKLALETTVLVESYTLPDGRVIKVGGERFEAPEALFQPHLINVEGPGVAELLFNTIQAADIDIRSELYKHIVLSGGSTMY 307 (389)
T ss_pred hHhhhhheeeeeeeecCCCcEEEecceeccCchhhcCcceeccCCCcHHHHHHHHHHHhccchHHHHHhHeeecCCcccC
Confidence 65554455567899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHhhCC-----------CCCeEEEECCCCCccceehhhhHhhcc-cccccccccHHHHhhcCccchhhc
Q psy2717 161 PGIADRMQKEITALAP-----------STIKIKIIAPPERKYSVWIGGSILASL-STFQQMWISKQEYDESGPGIVHRK 227 (229)
Q Consensus 161 ~Gl~~RL~~el~~~~~-----------~~~~v~v~~~~~~~~~~w~Ggsila~l-~~~~~~~Itr~ey~e~G~~~~~~k 227 (229)
|||+.||++||+++.- ..+++++-.||.|.+.+|+||+++|++ ..-+++|+||+||+|.|.+++.+.
T Consensus 308 PGLPSRLEkElkqlyl~rVL~~d~~~l~KfkiRIEdPPrRKhMVflGGAVLA~imkD~d~fW~skqeyqE~G~~~l~k~ 386 (389)
T KOG0677|consen 308 PGLPSRLEKELKQLYLDRVLKGDTDKLKKFKIRIEDPPRRKHMVFLGGAVLAGIMKDKDEFWMSKQEYQEEGINVLNKL 386 (389)
T ss_pred CCCcHHHHHHHHHHHHHHHHcCChhhhhheEEeccCCCccceeEEEchHHHHHHhcCCccceecHHHHHhhhHHHHHhh
Confidence 9999999999988631 124677888999999999999999986 556799999999999999988764
No 12
>KOG0680|consensus
Probab=100.00 E-value=3.2e-53 Score=338.41 Aligned_cols=225 Identities=31% Similarity=0.547 Sum_probs=207.5
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMA 82 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~ 82 (229)
..+|||.|++-|+|+|+.+|.+..++++|+++||+.||++|++.+..+.+ +...+..++++|||.+|||++|+.+.+.
T Consensus 153 c~lVIDsGysfThIip~v~g~~~~qaV~RiDvGGK~LTn~LKE~iSyR~l--NvmdET~vVNeiKEdvcfVSqnF~~~m~ 230 (400)
T KOG0680|consen 153 CCLVIDSGYSFTHIIPVVKGIPYYQAVKRIDVGGKALTNLLKETISYRHL--NVMDETYVVNEIKEDVCFVSQNFKEDMD 230 (400)
T ss_pred eEEEEeCCCceEEEehhhcCcchhhceEEeecchHHHHHHHHHHhhhhhh--cccchhhhhhhhhhheEEechhhHHHHH
Confidence 46899999999999999999999999999999999999999999998764 4467778999999999999999998887
Q ss_pred HhhcC---CCCcceEeCCCC-------------------ceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCC
Q psy2717 83 TAAAS---TSLEKSYELPDG-------------------QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCD 140 (229)
Q Consensus 83 ~~~~~---~~~~~~~~lpdg-------------------~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~ 140 (229)
.+... +.....|.|||- +.|+++.|||.+||+||+|+.++++++||+++|.+||..||
T Consensus 231 ~~~~k~~~~~~~i~YvLPDF~T~k~Gyvr~~~vk~~~d~qii~L~nErF~IPEilF~Psdi~I~q~GIpEAV~esl~~~P 310 (400)
T KOG0680|consen 231 IAKTKFQENKVMIDYVLPDFSTSKRGYVRNEDVKLPEDEQIITLTNERFTIPEILFSPSDIGIQQPGIPEAVLESLSMLP 310 (400)
T ss_pred HHhhccccceeEEEEecCCcccccceeEecCCCCCCCCcceeeecccccccchhhcChhhcCcccCCchHHHHHHHHhCH
Confidence 65433 233467888872 45788999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcC
Q psy2717 141 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESG 220 (229)
Q Consensus 141 ~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G 220 (229)
.++|..|+.||+++||++++|||.+||..||+.++|..+.++|..|.+|..-+|-||+-++.+.+|..+||||+||+|+|
T Consensus 311 e~~~p~l~~NIv~iGGn~~fPgF~~RL~~Elr~l~P~d~~v~V~~p~dp~~~~W~~g~~~~~~~~~~~~~itR~dy~E~G 390 (400)
T KOG0680|consen 311 EEVRPLLLENIVCIGGNSNFPGFRQRLARELRSLLPADWEVSVSVPEDPITFAWEGGSEFAKTDSFEKAVITREDYEEHG 390 (400)
T ss_pred HHHHHHHHhcEEEecCccCCcchHHHHHHHHHhhCCccceEEEecCCCcceeeehhccccccCcchhcceecHhhHhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccchhhccC
Q psy2717 221 PGIVHRKCF 229 (229)
Q Consensus 221 ~~~~~~k~~ 229 (229)
++.+.+|.|
T Consensus 391 ~~~~~~~~~ 399 (400)
T KOG0680|consen 391 PSWCTKKRF 399 (400)
T ss_pred chhhhhhcc
Confidence 999999875
No 13
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=8.5e-51 Score=349.56 Aligned_cols=227 Identities=49% Similarity=0.869 Sum_probs=203.8
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHh-----cCCCCCch---hHHHHHHHHHHhcc---
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTE-----RGYSFTTT---AEREIVRDIKEKLC--- 71 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~-----~~~~~~~~---~~~~~~~~iK~~~~--- 71 (229)
||||||+|++.|+|+||+||.++.++++++++||+++|.+|+++|.. +++.+... .+.++++.+|+++|
T Consensus 157 ~g~ViD~G~~~t~v~PV~DG~~l~~a~~ri~~gG~~it~~l~~lL~~~~~~~~~~~l~~e~~~~~~ei~~~ik~e~~~~~ 236 (444)
T COG5277 157 TGLVIDSGDSVTHVIPVVDGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCETD 236 (444)
T ss_pred ceEEEEcCCCceeeEeeeccccccccceeeecCcHHHHHHHHHHHhhcccccCCcccccccccccHHHHHHHHHhhcccc
Confidence 89999999999999999999999999999999999999999999998 55555544 56899999999999
Q ss_pred ----cccccHHHHHHHhhc----------------CCCCcceEeCCCCceeeecCc-cccccccccCCC--CCCCCCCC-
Q psy2717 72 ----YVALDFEQEMATAAA----------------STSLEKSYELPDGQVITIGNE-RFRCPEALFQPS--FLGMESCG- 127 (229)
Q Consensus 72 ----~v~~~~~~~~~~~~~----------------~~~~~~~~~lpdg~~i~~~~~-r~~~~E~lF~p~--~~~~~~~~- 127 (229)
|+..+..++.+.... .......+.+|||..+.++.+ ||++||.+|+|. ..+.+..+
T Consensus 237 ~~~~y~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~i~~~~e~rf~~pE~lF~pe~~~~~l~~~~~ 316 (444)
T COG5277 237 DESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEERFKAPEILFKPELPISGLEEAGK 316 (444)
T ss_pred ccccchhhcchHHHHHHhhhhhhhcccccccccchhccccccccCCCCceEeechhhhhhcchhhcCCcccccccccccc
Confidence 877665444332111 123346788999999999998 999999999999 66655555
Q ss_pred --------------------------HHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeE
Q psy2717 128 --------------------------IHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKI 181 (229)
Q Consensus 128 --------------------------l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v 181 (229)
|++++.++|..||.|.|+.|++||+||||+|++|||.+||.+||+.+.|....+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~gl~e~v~~si~~~~~~~r~~l~~nivitGGts~~pg~~~Rl~~el~~~~p~~~~v 396 (444)
T COG5277 317 IDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQICDEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKV 396 (444)
T ss_pred chhhhhhhhhhccccccccccccccchHHHHHHHHHhccHHHHHHHhhCEEEecCccCCCCHHHHHHHHHHhhcCCCCce
Confidence 999999999999999999999999999999999999999999999999998899
Q ss_pred EEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhccC
Q psy2717 182 KIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 182 ~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
.|..+++|.+.+|+||||+|++++|+++||||+||+|+|+.+++++||
T Consensus 397 ~v~~~~~~~~~~W~GaSila~~~~~~~~~itk~eY~e~G~~~~~~~~~ 444 (444)
T COG5277 397 SVIPPPDPSLDAWLGASILASLETFQQLWITKEEYEEHGPDILQEKRF 444 (444)
T ss_pred eeecCCchhhccccchhhhccccchhheEeeHHHhhhhhhHHHhhccC
Confidence 999999999999999999999999999999999999999999999986
No 14
>KOG0678|consensus
Probab=100.00 E-value=2.9e-38 Score=253.16 Aligned_cols=226 Identities=31% Similarity=0.556 Sum_probs=188.4
Q ss_pred CcceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHH
Q psy2717 1 MATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80 (229)
Q Consensus 1 ~~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 80 (229)
+.||+|||-|.+.|+|.||.|||++.++++++|++|+++|-+++++|++++...+.....+.++.+|+++||+.+|+..+
T Consensus 161 ~ltG~VidsGdgvThvipvaEgyVigScik~iPiagrdiT~fiQ~llRer~~~iP~e~sl~tak~iKe~ycy~cPdivke 240 (415)
T KOG0678|consen 161 FLTGIVIDSGDGVTHVIPVAEGYVIGSCIKHIPIAGRDITYFIQQLLREREVGIPPEQSLETAKAIKEKYCYTCPDIVKE 240 (415)
T ss_pred eeeeEEEecCCCeeEEEEeecceEEeeeeccccccCCchhHHHHHHhhCCCCCCChHHhhhhhHHHHhhhcccCcHHHHH
Confidence 36999999999999999999999999999999999999999999999998876666777899999999999999998777
Q ss_pred HHHhhcCCC-CcceE---eCCCC--ceeeecCccccccccccCCCCCCCC-CCCHHHHHHHHHhcCCHHHHHHhhcCeEE
Q psy2717 81 MATAAASTS-LEKSY---ELPDG--QVITIGNERFRCPEALFQPSFLGME-SCGIHETVYNSIMKCDVDIRKDLYANTVL 153 (229)
Q Consensus 81 ~~~~~~~~~-~~~~~---~lpdg--~~i~~~~~r~~~~E~lF~p~~~~~~-~~~l~~~I~~si~~~~~d~r~~l~~nIil 153 (229)
..+....+. ..+.| ..-.| ..++++.|||..||++|+|.....+ ...|++.+...|++||+|.|+-||+||++
T Consensus 241 f~k~d~ep~K~ikq~~~~~~i~~~~~~vDvgyerFlgpEiff~Pe~a~~d~~~~~~~~vd~~Iq~~pIdvrr~ly~nivl 320 (415)
T KOG0678|consen 241 FAKYDREPAKWIKQYTGINVITGKKFVVDVGYERFLGPEIFFHPEFANPDFLTPLSEVVDWVIQHCPIDVRRPLYKNIVL 320 (415)
T ss_pred HHHhccCHHHHHHHHhccchhcCCceeecccHHhhcChhhhcCccccCCccCcchHHHhhhhhhhCCcccchhhhhHHhh
Confidence 654321100 00111 11223 3466789999999999999976554 46799999999999999999999999999
Q ss_pred ecCCCCccchHHHHHHHHHhhCC--------------CCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhc
Q psy2717 154 SGGTTMYPGIADRMQKEITALAP--------------STIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDES 219 (229)
Q Consensus 154 tGG~s~i~Gl~~RL~~el~~~~~--------------~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~ 219 (229)
.||.+++++|..|++.+++.+.. ....+.++...-.++++|.|||+++|.+.|-..+-||++|+|+
T Consensus 321 sggst~fk~fgr~lqrD~kr~vd~rl~~s~~lsg~k~~~vdvqvish~~qr~avwfggs~lastpef~~~~~tk~~yee~ 400 (415)
T KOG0678|consen 321 SGGSTMFKDFGRRLQRDLKRLVDTRLAESEGLSGIKSKPVDVQVLSHLLQRTAVWFGGSKLASTPEFVPACHTKEDYEEY 400 (415)
T ss_pred ccchHHHHHhhhhccHHHHHHHHHHHHHhcccccCCCCCceeehhhhhhhhcceeccCccccCCcccccccCcchhhhhh
Confidence 99999999999999999987542 1123555655566899999999999999999999999999999
Q ss_pred Cccchhh
Q psy2717 220 GPGIVHR 226 (229)
Q Consensus 220 G~~~~~~ 226 (229)
|++|++.
T Consensus 401 g~si~r~ 407 (415)
T KOG0678|consen 401 GPSICRT 407 (415)
T ss_pred Chhhhhc
Confidence 9999864
No 15
>KOG0681|consensus
Probab=100.00 E-value=4.6e-35 Score=247.89 Aligned_cols=128 Identities=28% Similarity=0.591 Sum_probs=121.1
Q ss_pred eeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCe
Q psy2717 101 VITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIK 180 (229)
Q Consensus 101 ~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~ 180 (229)
.+.++-||+++||++|+|+++|.++.||.+++..++.+-|.|.+..|.+||+||||+|++||+++||..||..+.|-...
T Consensus 512 qlh~nVEriRvPEIiFqPsiiG~dQaGl~Ei~~~il~r~p~~eq~~lV~nVllTGG~s~~pGmkeRi~kElt~mrP~gS~ 591 (645)
T KOG0681|consen 512 QLHLNVERIRVPEIIFQPSIIGIDQAGLAEIMDTILRRYPHDEQEKLVSNVLLTGGCSQLPGMKERIKKELTSMRPVGSS 591 (645)
T ss_pred hhhhcceeeccceeeeccccccchhhhHHHHHHHHHHhCchhhhHhhhhheEeecccccCcCHHHHHHHHhheecccCCc
Confidence 34577899999999999999999999999999999999999999999999999999999999999999999999998889
Q ss_pred EEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccchhhcc
Q psy2717 181 IKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKC 228 (229)
Q Consensus 181 v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~~~~k~ 228 (229)
++|+.+.+|...||.|||.+|.-.+|..-|+||+||+|+|+..++..|
T Consensus 592 i~V~rasdP~LDAW~GA~~~a~n~~f~~~~~Tr~dy~E~G~e~~kEh~ 639 (645)
T KOG0681|consen 592 INVVRASDPVLDAWRGASAWAANPTFTLTQITRKDYEEKGEEYLKEHV 639 (645)
T ss_pred eEEEecCCcchhhhhhhHHhhcCcccchhhhhHHhhhhhhHHHHHHHh
Confidence 999999999999999999999999999999999999999998877544
No 16
>KOG0797|consensus
Probab=100.00 E-value=4.2e-33 Score=234.56 Aligned_cols=222 Identities=22% Similarity=0.476 Sum_probs=171.9
Q ss_pred CcceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCC-----CchhHHHHHHHHHHhcccccc
Q psy2717 1 MATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSF-----TTTAEREIVRDIKEKLCYVAL 75 (229)
Q Consensus 1 ~~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~-----~~~~~~~~~~~iK~~~~~v~~ 75 (229)
+.|+||||||+++|+|+||-||..++++..++++||+||+..+..+|.+.++++ ....++.+++++|+++|.+..
T Consensus 274 lss~CVVdiGAQkTsIaCVEdGvs~~ntri~L~YGGdDitr~f~~ll~rs~FPy~d~~v~~~~d~lLl~~LKe~Fc~l~~ 353 (618)
T KOG0797|consen 274 LSSACVVDIGAQKTSIACVEDGVSLPNTRIILPYGGDDITRCFLWLLRRSGFPYQDCDVLAPIDWLLLNQLKEKFCHLRA 353 (618)
T ss_pred ccceeEEEccCcceeEEEeecCccccCceEEeccCCchHHHHHHHHHHhcCCCcccccccccccHHHHHHHHHHhccccH
Confidence 579999999999999999999999999999999999999999999999987543 346688999999999998754
Q ss_pred cHHHHHHHhhcCCCCcceEeCCCC----ceeeecCccccccccccCCCCCCC----------------------------
Q psy2717 76 DFEQEMATAAASTSLEKSYELPDG----QVITIGNERFRCPEALFQPSFLGM---------------------------- 123 (229)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~lpdg----~~i~~~~~r~~~~E~lF~p~~~~~---------------------------- 123 (229)
....-... ...+.-||+ +++.+++|...+|-.||.|.+++.
T Consensus 354 a~~~vQ~~-------~F~~R~pn~~~~kytfk~~DE~mlAPlaLF~P~lf~~~~tk~~~~q~~~q~d~~d~fd~e~~~~~ 426 (618)
T KOG0797|consen 354 AELGVQLT-------VFSYREPNPPTLKYTFKLGDEVMLAPLALFYPNLFVIEGTKSHKNQSFPQPDREDLFDYEYLLED 426 (618)
T ss_pred hhhhhhhh-------hhhccCCCCcceeeeeeccchhhccchhhhhhhhhhccccccccccccCCCCcccccchhhhhhh
Confidence 32111000 011111222 123345555555555665543210
Q ss_pred -----------------------------------------------------------------------C----CCCH
Q psy2717 124 -----------------------------------------------------------------------E----SCGI 128 (229)
Q Consensus 124 -----------------------------------------------------------------------~----~~~l 128 (229)
. ...+
T Consensus 427 ~~~~~~~~~g~~~l~ls~~i~~~~~~~~~l~~~~d~~Elg~t~~d~f~p~~~s~~gslaa~~i~n~~~~~~~f~gl~l~l 506 (618)
T KOG0797|consen 427 TWKQDFGGGGNDGLQLSDSIGFSNRIRDQLPEKPDKEELGVTLKDNFAPLEKSIVGSLAAASIMNKKGLYESFYGLLLAL 506 (618)
T ss_pred cccccccccccccccccccccccccccccccccccchhhccccccccCCchhhhhhhhhhhhhhcccceeccccchhhcc
Confidence 0 1245
Q ss_pred HHHHHHHHhcCC-HHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCC----CeEEEECCC---CCccceehhhhHh
Q psy2717 129 HETVYNSIMKCD-VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST----IKIKIIAPP---ERKYSVWIGGSIL 200 (229)
Q Consensus 129 ~~~I~~si~~~~-~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~----~~v~v~~~~---~~~~~~w~Ggsil 200 (229)
.++|..||..|- .|.+++|++.|+++||+.++|||.+-|++.+....|.. ..|.|+.+| ||++.+|+||+|+
T Consensus 507 dqsii~sid~~~sdd~~rKl~sSil~Vgga~~~~g~~~~LEeRi~n~~pp~~~~I~~VsVip~prdMdp~~VaWKGaaIl 586 (618)
T KOG0797|consen 507 DQSIISSIDSALSDDTKRKLFSSILLVGGAGLFPGLVAALEERILNAIPPGREAIDTVSVIPPPRDMDPQFVAWKGAAIL 586 (618)
T ss_pred chhHHHhhhhhccchhhHhhhhHHHhhcccccchhHHHHHHHHHhccCCccccccCceeecCCCcCCCchheEecchhhh
Confidence 566777777653 48899999999999999999999999999998877652 257888766 7999999999999
Q ss_pred hcccccccccccHHHHhhcCccchhhccC
Q psy2717 201 ASLSTFQQMWISKQEYDESGPGIVHRKCF 229 (229)
Q Consensus 201 a~l~~~~~~~Itr~ey~e~G~~~~~~k~~ 229 (229)
|.+..-.++||++.||.-+|.++++.||.
T Consensus 587 a~l~~~~ELwI~~~dW~~~G~RvL~~k~~ 615 (618)
T KOG0797|consen 587 AILDFVRELWIENSDWQVHGVRVLQYKKY 615 (618)
T ss_pred hHHHHHHHHheechhHhhhhhhhhhhccc
Confidence 99999999999999999999999999874
No 17
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.87 E-value=1.2e-22 Score=171.76 Aligned_cols=175 Identities=14% Similarity=0.184 Sum_probs=132.1
Q ss_pred cceeEEecCCCeeEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPY-GNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 80 (229)
.+++|||+|+++|++++| ++|++.... +++||+++|+.|.+++.++ +......+.+|++|+++|++..+...+
T Consensus 150 ~~~lVvDiG~gttdvs~v~~~~~~~~~~---~~lGG~did~~l~~~l~~~---~~~~~~~~~ae~lK~~l~~~~~~~~~~ 223 (333)
T TIGR00904 150 TGSMVVDIGGGTTEVAVISLGGIVVSRS---IRVGGDEFDEAIINYIRRT---YNLLIGEQTAERIKIEIGSAYPLNDEP 223 (333)
T ss_pred ceEEEEEcCCCeEEEEEEEeCCEEecCC---ccchHHHHHHHHHHHHHHH---hcccCCHHHHHHHHHHHhccccccccc
Confidence 468999999999999999 888877654 4899999999999998754 222233567999999999886542211
Q ss_pred HHHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhc-CeEEecCCCC
Q psy2717 81 MATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA-NTVLSGGTTM 159 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~-nIiltGG~s~ 159 (229)
.. ... ......+.+|++..+ ..+ .+.|++|.|- .++.+.|.+++++|+++.+.++++ +|+||||+|+
T Consensus 224 ~~-~~~-~~~~~~~~~~~~~~i--~~~--~~~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~l~~~~IvL~GGss~ 291 (333)
T TIGR00904 224 RK-MEV-RGRDLVTGLPRTIEI--TSV--EVREALQEPV------NQIVEAVKRTLEKTPPELAADIVERGIVLTGGGAL 291 (333)
T ss_pred cc-eee-cCccccCCCCeEEEE--CHH--HHHHHHHHHH------HHHHHHHHHHHHhCCchhhhhhccCCEEEECcccc
Confidence 10 000 011123556766543 333 5678888874 468999999999999999999997 7999999999
Q ss_pred ccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 160 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 160 i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
+|||.+||++++ .+++..+.+|..++-+||++++.
T Consensus 292 ipgl~e~l~~~~--------~~~v~~~~~P~~~va~Ga~~~~~ 326 (333)
T TIGR00904 292 LRNLDKLLSKET--------GLPVIVADDPLLCVAKGTGKALE 326 (333)
T ss_pred hhhHHHHHHHHH--------CCCceecCChHHHHHHHHHHHHh
Confidence 999999999999 44556667788899999998863
No 18
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.87 E-value=1.7e-22 Score=170.94 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=131.1
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
.+++|||+|+++|+++||.+|.++. ....++||+++|++|.+++.++ +.+. ...+.++++|+++|++..+...+.
T Consensus 152 ~~~lVvDiG~gttdvs~v~~g~~~~--~~~~~lGG~~id~~l~~~l~~~-~~~~--~~~~~ae~~K~~~~~~~~~~~~~~ 226 (335)
T PRK13930 152 VGNMVVDIGGGTTEVAVISLGGIVY--SESIRVAGDEMDEAIVQYVRRK-YNLL--IGERTAEEIKIEIGSAYPLDEEES 226 (335)
T ss_pred CceEEEEeCCCeEEEEEEEeCCEEe--ecCcCchhHHHHHHHHHHHHHH-hCCC--CCHHHHHHHHHHhhcCcCCCCCce
Confidence 3579999999999999999999885 3568999999999999999865 2221 234678999999999875532110
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcC-eEEecCCCCc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN-TVLSGGTTMY 160 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~n-IiltGG~s~i 160 (229)
... ......+.+|+ .+.++.+++ .|++|.|. .++.+.|.++|.+|+++.+.++++| |+|+||+|++
T Consensus 227 ~~~---~~~~~~~~~~~--~~~i~~~~~--~e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~i 293 (335)
T PRK13930 227 MEV---RGRDLVTGLPK--TIEISSEEV--REALAEPL------QQIVEAVKSVLEKTPPELAADIIDRGIVLTGGGALL 293 (335)
T ss_pred EEE---ECccCCCCCCe--eEEECHHHH--HHHHHHHH------HHHHHHHHHHHHhCCHHHhhHHHhCCEEEECchhcc
Confidence 000 00011223343 445555655 37888763 4789999999999999999999998 9999999999
Q ss_pred cchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 161 PGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 161 ~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
|||.+||.+++. +++..+.+|..++-+|+++++.
T Consensus 294 pg~~~~l~~~~~--------~~v~~~~~p~~ava~Ga~~~~~ 327 (335)
T PRK13930 294 RGLDKLLSEETG--------LPVHIAEDPLTCVARGTGKALE 327 (335)
T ss_pred hhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 999999999993 3444455677888899998873
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.86 E-value=2.7e-22 Score=169.56 Aligned_cols=170 Identities=18% Similarity=0.327 Sum_probs=126.2
Q ss_pred cceeEEecCCCeeEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPY-GNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~ 80 (229)
.+++|||+|+++|+++++ ++|..... .+++||+++|++|.+++.+. +.+. .+.+.+|++|+++|++..++.++
T Consensus 150 ~~~lvvDiG~gtt~v~vi~~~~~~~~~---~~~~GG~~id~~l~~~l~~~-~~~~--~~~~~AE~iK~~l~~~~~~~~~~ 223 (335)
T PRK13929 150 VANVVVDIGGGTTEVAIISFGGVVSCH---SIRIGGDQLDEDIVSFVRKK-YNLL--IGERTAEQVKMEIGYALIEHEPE 223 (335)
T ss_pred ceEEEEEeCCCeEEEEEEEeCCEEEec---CcCCHHHHHHHHHHHHHHHH-hCcC--cCHHHHHHHHHHHcCCCCCCCCc
Confidence 368999999999999999 66655443 35899999999999999763 2222 23568999999999986543211
Q ss_pred HHHhhcCCCCcceEeCCCCceeeecCcccc--ccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhc-CeEEecCC
Q psy2717 81 MATAAASTSLEKSYELPDGQVITIGNERFR--CPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA-NTVLSGGT 157 (229)
Q Consensus 81 ~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~--~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~-nIiltGG~ 157 (229)
..... .....+.+| ..+.++.++|. ++|.+|+ +.++|.++|.+|+++.+.++++ +|+||||+
T Consensus 224 ~~~v~---g~~~~~~~p--~~i~i~~~~~~~~i~~~l~~----------i~~~i~~~L~~~~~~l~~~~~~~gIvLtGG~ 288 (335)
T PRK13929 224 TMEVR---GRDLVTGLP--KTITLESKEIQGAMRESLLH----------ILEAIRATLEDCPPELSGDIVDRGVILTGGG 288 (335)
T ss_pred eEEEe---CCccCCCCC--eEEEEcHHHHHHHHHHHHHH----------HHHHHHHHHHhCCcccchhhcCCCEEEEchh
Confidence 00000 001112344 35677777776 5777775 8999999999999999999998 69999999
Q ss_pred CCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHh
Q psy2717 158 TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSIL 200 (229)
Q Consensus 158 s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsil 200 (229)
|++|||.+||++++ .+++....+|..++-+|+..+
T Consensus 289 s~lpgl~e~l~~~~--------~~~v~~~~~P~~~Va~Ga~~~ 323 (335)
T PRK13929 289 ALLNGIKEWLSEEI--------VVPVHVAANPLESVAIGTGRS 323 (335)
T ss_pred hhhhhHHHHHHHHH--------CCCceeCCCHHHHHHHHHHHH
Confidence 99999999999999 334445567788888996654
No 20
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.84 E-value=1e-21 Score=166.10 Aligned_cols=173 Identities=16% Similarity=0.190 Sum_probs=126.7
Q ss_pred ceeEEecCCCeeEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPY-GNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
+++|||+|+++|+++|+ ++|++..++ +++||+++|+.|.++|.++. .+ ..+.+.++++|+++|++..+.+...
T Consensus 149 ~~lvvDiGggttdvs~v~~~~~~~~~~---~~lGG~~id~~l~~~l~~~~-~~--~~~~~~ae~iK~~~~~~~~~~~~~~ 222 (334)
T PRK13927 149 GSMVVDIGGGTTEVAVISLGGIVYSKS---VRVGGDKFDEAIINYVRRNY-NL--LIGERTAERIKIEIGSAYPGDEVLE 222 (334)
T ss_pred eEEEEEeCCCeEEEEEEecCCeEeeCC---cCChHHHHHHHHHHHHHHHh-Cc--CcCHHHHHHHHHHhhccCCCCCCce
Confidence 46999999999999999 788776654 47999999999999997541 12 2335679999999998864321000
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcC-eEEecCCCCc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN-TVLSGGTTMY 160 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~n-IiltGG~s~i 160 (229)
..- ......+.+|+ .+.++.++|. |++|.|. .++.+.|.++|.+|+++.+.+++++ |+|+||+|++
T Consensus 223 --~~~-~~~~~~~~~~~--~~~i~~~~~~--e~i~~~~------~~i~~~i~~~l~~~~~~~~~~~~~~~IvL~GG~s~i 289 (334)
T PRK13927 223 --MEV-RGRDLVTGLPK--TITISSNEIR--EALQEPL------SAIVEAVKVALEQTPPELAADIVDRGIVLTGGGALL 289 (334)
T ss_pred --EEE-eCcccCCCCCe--EEEECHHHHH--HHHHHHH------HHHHHHHHHHHHHCCchhhhhhhcCCEEEECchhhh
Confidence 000 00001122332 4556666664 7888764 4799999999999999999999975 9999999999
Q ss_pred cchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 161 PGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 161 ~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
|||.+||++++. +++....+|..++-.|+++++.
T Consensus 290 pgl~~~l~~~~~--------~~v~~~~~P~~ava~Ga~~~~~ 323 (334)
T PRK13927 290 RGLDKLLSEETG--------LPVHVAEDPLTCVARGTGKALE 323 (334)
T ss_pred hHHHHHHHHHHC--------CCcEecCCHHHHHHHHHHHHHh
Confidence 999999999983 3444456667888899888763
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.82 E-value=8.9e-21 Score=157.98 Aligned_cols=169 Identities=16% Similarity=0.217 Sum_probs=123.9
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
-+|||||+++|+|+.+..|.++.+ +.+++||+++++.+.++++++ ++.......+|++|++++++....++..
T Consensus 147 ~miVDIG~GtTdiavislggiv~s--~si~~gG~~~DeaI~~~ir~~---y~l~Ig~~tAE~iK~~~g~~~~~~~~~~-- 219 (326)
T PF06723_consen 147 SMIVDIGGGTTDIAVISLGGIVAS--RSIRIGGDDIDEAIIRYIREK---YNLLIGERTAEKIKIEIGSASPPEEEES-- 219 (326)
T ss_dssp EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHHHHH---HSEE--HHHHHHHHHHH-BSS--HHHHE--
T ss_pred eEEEEECCCeEEEEEEECCCEEEE--EEEEecCcchhHHHHHHHHHh---hCcccCHHHHHHHHHhcceeeccCCCce--
Confidence 489999999999999999998864 678999999999999999987 4456678899999999998864432210
Q ss_pred hhcCCCCcceEeCCCCceee--ec-CccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcC-eEEecCCCC
Q psy2717 84 AAASTSLEKSYELPDGQVIT--IG-NERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN-TVLSGGTTM 159 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~--~~-~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~n-IiltGG~s~ 159 (229)
....-..+-+|.+.. +. .+-..+.+..+. .+.++|.+.|.++|||+..++++| |+||||+|+
T Consensus 220 -----~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~---------~I~~~i~~~Le~~pPel~~DI~~~GI~LtGGga~ 285 (326)
T PF06723_consen 220 -----MEVRGRDLITGLPKSIEITSSEVREAIEPPVD---------QIVEAIKEVLEKTPPELAADILENGIVLTGGGAL 285 (326)
T ss_dssp -----EEEEEEETTTTCEEEEEEEHHHHHHHHHHHHH---------HHHHHHHHHHHTS-HHHHHHHHHH-EEEESGGGG
T ss_pred -----EEEECccccCCCcEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHhCCHHHHHHHHHCCEEEEChhhh
Confidence 011223345565433 33 233344444443 489999999999999999999987 999999999
Q ss_pred ccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 160 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 160 i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
++||.++|++++ .++|...++|.+++-.|+..+.
T Consensus 286 l~Gl~~~i~~~~--------~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 286 LRGLDEYISEET--------GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp SBTHHHHHHHHH--------SS-EEE-SSTTTHHHHHHHHTT
T ss_pred hccHHHHHHHHH--------CCCEEEcCCHHHHHHHHHHHHH
Confidence 999999999999 6788888899999999977654
No 22
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.78 E-value=3.3e-19 Score=150.91 Aligned_cols=175 Identities=15% Similarity=0.251 Sum_probs=124.7
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
..++|||+|+++|+|++|.+|.++.. ..+++||+++|+.|.+.+.++ +......+.+|++|++++.+..+..++.
T Consensus 147 ~~~lVvDiGggttdvsvv~~g~~~~~--~~~~lGG~did~~i~~~l~~~---~~~~~~~~~ae~lK~~~~~~~~~~~~~~ 221 (336)
T PRK13928 147 SGNMVVDIGGGTTDIAVLSLGGIVTS--SSIKVAGDKFDEAIIRYIRKK---YKLLIGERTAEEIKIKIGTAFPGAREEE 221 (336)
T ss_pred CeEEEEEeCCCeEEEEEEEeCCEEEe--CCcCCHHHHHHHHHHHHHHHH---hchhcCHHHHHHHHHHhcccccccCCcE
Confidence 45899999999999999999987755 367999999999999999754 2112234569999999887743311000
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhc-CeEEecCCCCc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYA-NTVLSGGTTMY 160 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~-nIiltGG~s~i 160 (229)
..- ......+.+|++ +.++.+++. |+++.+- ..+.+.|.+++.+++++.+.+.++ +|+||||+|++
T Consensus 222 --~~v-~g~~~~~~~~~~--~~i~~~~~~--eii~~~~------~~i~~~i~~~l~~~~~~~~~~~i~~~IvL~GG~s~i 288 (336)
T PRK13928 222 --MEI-RGRDLVTGLPKT--ITVTSEEIR--EALKEPV------SAIVQAVKSVLERTPPELSADIIDRGIIMTGGGALL 288 (336)
T ss_pred --EEE-ecccccCCCceE--EEECHHHHH--HHHHHHH------HHHHHHHHHHHHhCCccccHhhcCCCEEEECcccch
Confidence 000 000001123332 445555444 5555542 358889999999999999989998 79999999999
Q ss_pred cchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 161 PGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 161 ~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
||+.++|++++. ++|....+|..++-+||++++.
T Consensus 289 pgi~e~l~~~~~--------~~v~~~~~P~~ava~Gaa~~~~ 322 (336)
T PRK13928 289 HGLDKLLAEETK--------VPVYIAEDPISCVALGTGKMLE 322 (336)
T ss_pred hhHHHHHHHHHC--------CCceecCCHHHHHHHHHHHHHh
Confidence 999999999993 3444556788999999888763
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.63 E-value=1.3e-16 Score=129.49 Aligned_cols=174 Identities=14% Similarity=0.161 Sum_probs=127.0
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
..|||||+++|+|..+..|-++.. .++.+||+.+++.+.++++++ ++.......+|+||.+.+++.++...+..+
T Consensus 155 ~mvvDIGgGTTevaVISlggiv~~--~Sirv~GD~~De~Ii~yvr~~---~nl~IGe~taE~iK~eiG~a~~~~~~~~~~ 229 (342)
T COG1077 155 SMVVDIGGGTTEVAVISLGGIVSS--SSVRVGGDKMDEAIIVYVRKK---YNLLIGERTAEKIKIEIGSAYPEEEDEELE 229 (342)
T ss_pred CEEEEeCCCceeEEEEEecCEEEE--eeEEEecchhhHHHHHHHHHH---hCeeecHHHHHHHHHHhcccccccCCccce
Confidence 689999999999999988777754 456799999999999999987 555666788999999999986543221110
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcC-eEEecCCCCccc
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN-TVLSGGTTMYPG 162 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~n-IiltGG~s~i~G 162 (229)
..-. -.+....+|....++....+-..-|.+. .|.++|...+.+||+|+-.+++++ |++|||+|+++|
T Consensus 230 ~eV~-Grdl~~GlPk~i~i~s~ev~eal~~~v~----------~Iveair~~Le~tpPeL~~DI~ergivltGGGalLrg 298 (342)
T COG1077 230 MEVR-GRDLVTGLPKTITINSEEIAEALEEPLN----------GIVEAIRLVLEKTPPELAADIVERGIVLTGGGALLRG 298 (342)
T ss_pred eeEE-eeecccCCCeeEEEcHHHHHHHHHHHHH----------HHHHHHHHHHhhCCchhcccHhhCceEEecchHHhcC
Confidence 0000 0001112333222222222222223333 589999999999999999999999 999999999999
Q ss_pred hHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 163 IADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 163 l~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|.+.|.+|. .+.|+-.++|-.++-+|+....
T Consensus 299 lD~~i~~et--------~~pv~ia~~pL~~Va~G~G~~l 329 (342)
T COG1077 299 LDRLLSEET--------GVPVIIADDPLTCVAKGTGKAL 329 (342)
T ss_pred chHhHHhcc--------CCeEEECCChHHHHHhccchhh
Confidence 999999998 7788888999888888865543
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.33 E-value=2.4e-12 Score=103.85 Aligned_cols=129 Identities=17% Similarity=0.191 Sum_probs=91.6
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
.+|||+|+++|+++.+.+|.++.. ..+++||+++|+.+.+.+. .+.+.+|.+|..... .++..
T Consensus 110 ~~vvDiGggtt~i~i~~~G~i~~~--~~~~~GG~~it~~Ia~~~~---------i~~~~AE~~K~~~~~-----~~~~~- 172 (239)
T TIGR02529 110 GAVVDVGGGTTGISILKKGKVIYS--ADEPTGGTHMSLVLAGAYG---------ISFEEAEEYKRGHKD-----EEEIF- 172 (239)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEE--EeeecchHHHHHHHHHHhC---------CCHHHHHHHHHhcCC-----HHHHH-
Confidence 589999999999999999988753 5678999999998876553 124667888876431 11100
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
...+.+. ..+.+.|.+++.+.++ ..|+||||+|++||+
T Consensus 173 --------------------------~~i~~~~---------~~i~~~i~~~l~~~~~-------~~v~LtGG~a~ipgl 210 (239)
T TIGR02529 173 --------------------------PVVKPVY---------QKMASIVKRHIEGQGV-------KDLYLVGGACSFSGF 210 (239)
T ss_pred --------------------------HHHHHHH---------HHHHHHHHHHHHhCCC-------CEEEEECchhcchhH
Confidence 0001111 1255566666665544 369999999999999
Q ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhH
Q psy2717 164 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 199 (229)
Q Consensus 164 ~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsi 199 (229)
.++|.+.+ .++|..+.+|.+++-+|+++
T Consensus 211 ~e~l~~~l--------g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 211 ADVFEKQL--------GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHh--------CCCcccCCCCCeehhheeec
Confidence 99999999 44555677888998888764
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.27 E-value=3.1e-11 Score=99.01 Aligned_cols=131 Identities=14% Similarity=0.138 Sum_probs=90.9
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
++|||||+++|+++-+.+|.++.. ...++||+++|+.+.+.+.- +.+.+|.+|..... .+++.
T Consensus 137 ~~vvDIGggtt~i~v~~~g~~~~~--~~~~~GG~~it~~Ia~~l~i---------~~~eAE~lK~~~~~-----~~~~~- 199 (267)
T PRK15080 137 GAVVDIGGGTTGISILKDGKVVYS--ADEPTGGTHMSLVLAGAYGI---------SFEEAEQYKRDPKH-----HKEIF- 199 (267)
T ss_pred cEEEEeCCCcEEEEEEECCeEEEE--ecccCchHHHHHHHHHHhCC---------CHHHHHHHHhccCC-----HHHHH-
Confidence 689999999999999999988764 46799999999998876531 24557777765320 00000
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
.+.+.+++ .+.+.|.+++.+.+ .+.|+||||+|++||+
T Consensus 200 --------------------------~ii~~~~~---------~i~~~i~~~l~~~~-------~~~IvLtGG~s~lpgl 237 (267)
T PRK15080 200 --------------------------PVVKPVVE---------KMASIVARHIEGQD-------VEDIYLVGGTCCLPGF 237 (267)
T ss_pred --------------------------HHHHHHHH---------HHHHHHHHHHhcCC-------CCEEEEECCcccchhH
Confidence 00111111 24445555555432 3579999999999999
Q ss_pred HHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 164 ADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 164 ~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
.+.+.+.+ .+++..+++|.+++-+|+.+++
T Consensus 238 ~e~l~~~l--------g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 238 EEVFEKQT--------GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHh--------CCCcccCCCchHHHHHHHHhhC
Confidence 99999999 3344456788899999988764
No 26
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.25 E-value=1.5e-11 Score=107.16 Aligned_cols=164 Identities=20% Similarity=0.205 Sum_probs=104.9
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
-+|||+|+++|+++.+.+|.++.. ..+++||+++|+.+.+.|.- ..+.+|.+|.+++....+..
T Consensus 206 v~vvDiGggtTdisv~~~G~l~~~--~~i~~GG~~it~dIa~~l~i---------~~~~AE~lK~~~g~~~~~~~----- 269 (420)
T PRK09472 206 VCVVDIGGGTMDIAVYTGGALRHT--KVIPYAGNVVTSDIAYAFGT---------PPSDAEAIKVRHGCALGSIV----- 269 (420)
T ss_pred eEEEEeCCCceEEEEEECCEEEEE--eeeechHHHHHHHHHHHhCc---------CHHHHHHHHHhcceeccccC-----
Confidence 589999999999999999998843 66899999999999865531 24678999988765422210
Q ss_pred hhcCCCCcceEeCC--CCc-eeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHH-----hhcCeEEec
Q psy2717 84 AAASTSLEKSYELP--DGQ-VITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKD-----LYANTVLSG 155 (229)
Q Consensus 84 ~~~~~~~~~~~~lp--dg~-~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~-----l~~nIiltG 155 (229)
.....+++| ++. ...+. +....+++.. ....|.++|.+++..++.+++.. +.+.|+|||
T Consensus 270 -----~~~~~i~v~~~~~~~~~~i~--~~~l~~ii~~------r~~ei~~~i~~~l~~~~~~l~~~g~~~~~~~givLtG 336 (420)
T PRK09472 270 -----GKDESVEVPSVGGRPPRSLQ--RQTLAEVIEP------RYTELLNLVNEEILQLQEQLRQQGVKHHLAAGIVLTG 336 (420)
T ss_pred -----CCCceeEecCCCCCCCeEEc--HHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCcccCCCEEEEeC
Confidence 001223332 111 11111 1111111111 01235567777777777666543 345599999
Q ss_pred CCCCccchHHHHHHHHHhhCCCCCeEEEECC----------CCCccceehhhhHhhc
Q psy2717 156 GTTMYPGIADRMQKEITALAPSTIKIKIIAP----------PERKYSVWIGGSILAS 202 (229)
Q Consensus 156 G~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~----------~~~~~~~w~Ggsila~ 202 (229)
|+|++||+.+.+.+.+.. ++++..| .+|.|++-+|...++.
T Consensus 337 G~a~lpgi~e~~~~~f~~------~vri~~P~~~~g~~~~~~~P~~ata~Gl~~~~~ 387 (420)
T PRK09472 337 GAAQIEGLAACAQRVFHT------QVRIGAPLNITGLTDYAQEPYYSTAVGLLHYGK 387 (420)
T ss_pred chhccccHHHHHHHHhCC------CeEEeCCcccCCChhhcCCcHHHHHHHHHHHhh
Confidence 999999999999988842 3333222 3578888899888865
No 27
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.21 E-value=5.4e-11 Score=102.17 Aligned_cols=136 Identities=20% Similarity=0.225 Sum_probs=86.6
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
-+|||+|+++|+++.+.+|.+.. ...+++||+++|+.+.+.+.- ..+.+|++|.+++....+..
T Consensus 198 ~~vvDiG~gtt~i~i~~~g~~~~--~~~i~~GG~~it~~i~~~l~~---------~~~~AE~lK~~~~~~~~~~~----- 261 (371)
T TIGR01174 198 VCLIDIGGGTTDIAVYTGGSIRY--TKVIPIGGNHITKDIAKALRT---------PLEEAERIKIKYGCASIPLE----- 261 (371)
T ss_pred EEEEEeCCCcEEEEEEECCEEEE--EeeecchHHHHHHHHHHHhCC---------CHHHHHHHHHHeeEecccCC-----
Confidence 48999999999999999998765 466899999999998775431 25678999999886532210
Q ss_pred hhcCCCCcceEeCCC---CceeeecCccc-cccccccCCCCCCCCCCCHHHHHH-HHHhcCCHHHHHHhhcC-eEEecCC
Q psy2717 84 AAASTSLEKSYELPD---GQVITIGNERF-RCPEALFQPSFLGMESCGIHETVY-NSIMKCDVDIRKDLYAN-TVLSGGT 157 (229)
Q Consensus 84 ~~~~~~~~~~~~lpd---g~~i~~~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~-~si~~~~~d~r~~l~~n-IiltGG~ 157 (229)
.....++++. +....+....+ .+.+..+ ..+.+.|. +.+.+.+.+ .. ..+ |+||||+
T Consensus 262 -----~~~~~i~~~~~~~~~~~~is~~~l~~ii~~~~---------~ei~~~i~~~~L~~~~~~--~~-i~~gIvLtGG~ 324 (371)
T TIGR01174 262 -----GPDENIEIPSVGERPPRSLSRKELAEIIEARA---------EEILEIVKQKELRKSGFK--EE-LNGGIVLTGGG 324 (371)
T ss_pred -----CCCCEEEeccCCCCCCeEEcHHHHHHHHHHHH---------HHHHHHHHHHHHHhcCCc--cc-CCCEEEEeChH
Confidence 0112233321 11222222111 1111111 12555554 666555443 22 345 9999999
Q ss_pred CCccchHHHHHHHHH
Q psy2717 158 TMYPGIADRMQKEIT 172 (229)
Q Consensus 158 s~i~Gl~~RL~~el~ 172 (229)
|++||+.+++.+.+.
T Consensus 325 S~ipgi~~~l~~~~~ 339 (371)
T TIGR01174 325 AQLEGIVELAEKVFD 339 (371)
T ss_pred HcccCHHHHHHHHhC
Confidence 999999999999884
No 28
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.06 E-value=3.4e-10 Score=97.27 Aligned_cols=157 Identities=20% Similarity=0.235 Sum_probs=101.5
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
.++||+|+++|+|+.+.+|.+... ..+|+||+++|+.+.+.|.- +.+.+|+||.+++....+..
T Consensus 205 v~lIDiG~GTTdIai~~~G~l~~~--~~ipvgG~~vT~DIa~~l~t---------~~~~AE~iK~~~g~a~~~~~----- 268 (418)
T COG0849 205 VALIDIGGGTTDIAIYKNGALRYT--GVIPVGGDHVTKDIAKGLKT---------PFEEAERIKIKYGSALISLA----- 268 (418)
T ss_pred eEEEEeCCCcEEEEEEECCEEEEE--eeEeeCccHHHHHHHHHhCC---------CHHHHHHHHHHcCccccCcC-----
Confidence 589999999999999999999976 45899999999999887653 25779999999875533211
Q ss_pred hhcCCCCcceEeCC--CCce-eeecC------ccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEe
Q psy2717 84 AAASTSLEKSYELP--DGQV-ITIGN------ERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLS 154 (229)
Q Consensus 84 ~~~~~~~~~~~~lp--dg~~-i~~~~------~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIilt 154 (229)
.....++.| ++.. ..+.. .+-+++| +-+++...|.+.-.+ ..+...|+||
T Consensus 269 -----~~~~~i~v~~vg~~~~~~~t~~~ls~II~aR~~E--------------i~~lV~~~l~~~g~~--~~~~~gvVlT 327 (418)
T COG0849 269 -----DDEETIEVPSVGSDIPRQVTRSELSEIIEARVEE--------------ILELVKAELRKSGLP--NHLPGGVVLT 327 (418)
T ss_pred -----CCcceEecccCCCcccchhhHHHHHHHHHhhHHH--------------HHHHHHHHHHHcCcc--ccCCCeEEEE
Confidence 112223322 1111 11100 1112222 334555555544322 5566779999
Q ss_pred cCCCCccchHHHHHHHHHhhCCCCCeEEEEC----------CCCCccceehhhhHhhcc
Q psy2717 155 GGTTMYPGIADRMQKEITALAPSTIKIKIIA----------PPERKYSVWIGGSILASL 203 (229)
Q Consensus 155 GG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~----------~~~~~~~~w~Ggsila~l 203 (229)
||++.+||+.+--..-+.. ++++-. ..+|.|++-+|.-.++.+
T Consensus 328 GG~a~l~Gi~elA~~if~~------~vRig~P~~~~Gl~d~~~~p~fs~avGl~~~~~~ 380 (418)
T COG0849 328 GGGAQLPGIVELAERIFGR------PVRLGVPLNIVGLTDIARNPAFSTAVGLLLYGAL 380 (418)
T ss_pred CchhcCccHHHHHHHhcCC------ceEeCCCccccCchhhccCchhhhhHHHHHHHhh
Confidence 9999999998865554432 223322 235789999998887765
No 29
>CHL00094 dnaK heat shock protein 70
Probab=98.88 E-value=7.4e-09 Score=94.55 Aligned_cols=166 Identities=20% Similarity=0.230 Sum_probs=94.0
Q ss_pred ceeEEecCCCeeEEEEeeCCe-e--ccccceeecccHHHHHHHHHHHHHhc-----CCCCCch-----hHHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGY-A--LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-----AEREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~-~--~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-----~~~~~~~~iK~~ 69 (229)
.-+|+|+|+++++|+.+..+. . +..+....++||+++++.|.+++.++ +.+.... .-...+|.+|+.
T Consensus 188 ~vlV~DlGgGT~DvSv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~ 267 (621)
T CHL00094 188 TILVFDLGGGTFDVSILEVGDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKKEGIDLSKDRQALQRLTEAAEKAKIE 267 (621)
T ss_pred EEEEEEcCCCeEEEEEEEEcCCEEEEEEEecCCCcChHHHHHHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHHHHh
Confidence 358999999999998884332 1 11122345899999999999887643 1111110 011234556666
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC------CC-cee--eecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP------DG-QVI--TIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp------dg-~~i--~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++... ...+.+| +| ..+ .+..++|. ..+.+++ .+.+.|.+++.+.
T Consensus 268 LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a 322 (621)
T CHL00094 268 LSNLT----------------QTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLIN---------RCRIPVENALKDA 322 (621)
T ss_pred cCCCC----------------ceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 54221 1111121 11 112 23333331 1122221 2344455555544
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.. ...-.+.|+|+||+|++|++.+.|.+.+.. ++....+|..++..||+++|..
T Consensus 323 ~~--~~~~i~~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~~pdeava~GAA~~aa~ 376 (621)
T CHL00094 323 KL--DKSDIDEVVLVGGSTRIPAIQELVKKLLGK--------KPNQSVNPDEVVAIGAAVQAGV 376 (621)
T ss_pred CC--ChhhCcEEEEECCccCChHHHHHHHHHhCC--------CcCcCCCchhHHHhhhHHHHHH
Confidence 22 223347799999999999999999987732 2333456678889999998864
No 30
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.87 E-value=1.1e-08 Score=92.64 Aligned_cols=157 Identities=16% Similarity=0.175 Sum_probs=96.6
Q ss_pred eeEEecCCCeeEEEEe--eCCeec-cccceeecccHHHHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHhcccccccHHH
Q psy2717 4 RKLSTVSLHNKYSNPY--GNGYAL-PHAILRLDLAGRDLTDYLMKILTERGYSFTT-TAEREIVRDIKEKLCYVALDFEQ 79 (229)
Q Consensus 4 glVVDiG~~~t~v~pV--~~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~-~~~~~~~~~iK~~~~~v~~~~~~ 79 (229)
-+|+|+|+++++|+.+ .+|..- ..+.--..+||+++++.|.+++.++- .... ......++..|+.++.-.
T Consensus 195 vlV~DlGGGT~DvSi~~~~~~~~~V~at~gd~~lGG~d~D~~l~~~~~~~~-~~~~~~~~~~~~ekaK~~LS~~~----- 268 (595)
T PRK01433 195 YLVYDLGGGTFDVSILNIQEGIFQVIATNGDNMLGGNDIDVVITQYLCNKF-DLPNSIDTLQLAKKAKETLTYKD----- 268 (595)
T ss_pred EEEEECCCCcEEEEEEEEeCCeEEEEEEcCCcccChHHHHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHhcCCCc-----
Confidence 4899999999999887 344321 11112347999999999999987652 1111 112234555665543211
Q ss_pred HHHHhhcCCCCcceEeCCCCceeeecCccc-cccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCC
Q psy2717 80 EMATAAASTSLEKSYELPDGQVITIGNERF-RCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTT 158 (229)
Q Consensus 80 ~~~~~~~~~~~~~~~~lpdg~~i~~~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s 158 (229)
.+.. ..+.+..+.| ...+.+|+ .+.+.|.+++.... ..=.+.|+|+||+|
T Consensus 269 -------------~~~~---~~~~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~----~~~Id~ViLvGGss 319 (595)
T PRK01433 269 -------------SFNN---DNISINKQTLEQLILPLVE---------RTINIAQECLEQAG----NPNIDGVILVGGAT 319 (595)
T ss_pred -------------cccc---ceEEEcHHHHHHHHHHHHH---------HHHHHHHHHHhhcC----cccCcEEEEECCcc
Confidence 0111 1344554444 22233332 25556666666554 11247799999999
Q ss_pred CccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 159 MYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 159 ~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
++|.+.+.|.+.+. .++....+|..++-.||++.|..
T Consensus 320 riP~v~~~l~~~f~--------~~~~~~~npdeaVA~GAAi~a~~ 356 (595)
T PRK01433 320 RIPLIKDELYKAFK--------VDILSDIDPDKAVVWGAALQAEN 356 (595)
T ss_pred cChhHHHHHHHHhC--------CCceecCCchHHHHHHHHHHHHH
Confidence 99999999997762 23444566778889999998864
No 31
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.85 E-value=1.2e-08 Score=93.38 Aligned_cols=166 Identities=16% Similarity=0.212 Sum_probs=95.1
Q ss_pred ceeEEecCCCeeEEEEeeC--Cee-ccccceeecccHHHHHHHHHHHHHhc-----CCCCCch-h----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYGN--GYA-LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-A----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~--G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-~----~~~~~~~iK~~ 69 (229)
+-+|+|+|+++++|+.+.- |.. +..+....++||+++++.|.+++.++ +.++... . -...++.+|+.
T Consensus 186 ~vlV~D~GggT~dvsv~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~ 265 (627)
T PRK00290 186 KILVYDLGGGTFDVSILEIGDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENGIDLRKDKMALQRLKEAAEKAKIE 265 (627)
T ss_pred EEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCcChHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHH
Confidence 4689999999999988733 221 12222335799999999999887643 1111110 0 01234555555
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC----C--C-c--eeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP----D--G-Q--VITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--g-~--~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++.-. ...+.+| | | . .+.+..+.|. ..+.+++ .+.+.|.+++...
T Consensus 266 LS~~~----------------~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~---------~~~~~i~~~l~~a 320 (627)
T PRK00290 266 LSSAQ----------------QTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVE---------RTIEPCKQALKDA 320 (627)
T ss_pred cCCCC----------------eEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 43211 1111111 1 2 1 2334333331 1222332 3555666666655
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
... ..-...|+|+||+|++|.+.++|.+.+.. .+....+|..++..||+++|..
T Consensus 321 ~~~--~~~id~ViLvGGssriP~v~~~l~~~fg~--------~~~~~~npdeava~GAa~~aa~ 374 (627)
T PRK00290 321 GLS--VSDIDEVILVGGSTRMPAVQELVKEFFGK--------EPNKGVNPDEVVAIGAAIQGGV 374 (627)
T ss_pred CCC--hhhCcEEEEECCcCCChHHHHHHHHHhCC--------CCCcCcCChHHHHHhHHHHHHH
Confidence 332 22357799999999999999999887721 2233456678899999998753
No 32
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.84 E-value=1.3e-08 Score=92.66 Aligned_cols=166 Identities=17% Similarity=0.236 Sum_probs=95.7
Q ss_pred ceeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-----CCCCCch-h----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-A----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-~----~~~~~~~iK~~ 69 (229)
+-+|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.+++.++ +.++... . -...++..|+.
T Consensus 184 ~vlV~D~Gggt~dvsv~~~~~~~~~v~~~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~ 263 (595)
T TIGR02350 184 KILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEGIDLSKDKMALQRLKEAAEKAKIE 263 (595)
T ss_pred EEEEEECCCCeEEEEEEEecCCeEEEEEecCCcccCchhHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHH
Confidence 458999999999998873 3322 12222235799999999998887643 1111110 0 11234555655
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC----C--C-c--eeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP----D--G-Q--VITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--g-~--~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++... ...+.+| | | . .+.+..+.|. ..+.+++ .+.+.|.+++.+.
T Consensus 264 LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~---------~~~~~i~~~l~~a 318 (595)
T TIGR02350 264 LSSVL----------------STEINLPFITADASGPKHLEMTLTRAKFEELTADLVE---------RTKEPVRQALKDA 318 (595)
T ss_pred cCCCC----------------ceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 54211 1111111 1 1 1 2334443331 2222332 3555666666554
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
... ..-.+.|+|+||+|++|++.+.+.+.+. .++....+|..++..||++.|..
T Consensus 319 ~~~--~~~i~~V~LvGGssriP~v~~~i~~~f~--------~~~~~~~~pdeava~GAa~~aa~ 372 (595)
T TIGR02350 319 GLS--ASDIDEVILVGGSTRIPAVQELVKDFFG--------KEPNKSVNPDEVVAIGAAIQGGV 372 (595)
T ss_pred CCC--HhHCcEEEEECCcccChHHHHHHHHHhC--------CcccCCcCcHHHHHHHHHHHHHH
Confidence 321 2235779999999999999999998763 23344556778899999998854
No 33
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.83 E-value=2.1e-08 Score=92.16 Aligned_cols=166 Identities=19% Similarity=0.250 Sum_probs=95.7
Q ss_pred ceeEEecCCCeeEEEEee--CCeec-cccceeecccHHHHHHHHHHHHHhc-----CCCCCch-h----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYAL-PHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-A----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-~----~~~~~~~iK~~ 69 (229)
.-+|+|+|+++++|+.+. +|... ..+.--.++||+++++.|.+++.++ +.+.... . -...++.+|+.
T Consensus 227 ~vlV~DlGgGT~DvSv~~~~~g~~~v~a~~gd~~LGG~d~D~~l~~~l~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~ 306 (663)
T PTZ00400 227 TIAVYDLGGGTFDISILEILGGVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQGIDLKKDKLALQRLREAAETAKIE 306 (663)
T ss_pred EEEEEeCCCCeEEEEEEEecCCeeEEEecccCCCcCHHHHHHHHHHHHHHHhhhhcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 358999999999998773 55432 2222335899999999999887653 1111110 0 01234555555
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC----C--C-c--eeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP----D--G-Q--VITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp----d--g-~--~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++.-. ...+.+| | | . .+.+..+.|. ..+.+|. .+.+.|.+++.++
T Consensus 307 LS~~~----------------~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~---------~~~~~i~~~L~~a 361 (663)
T PTZ00400 307 LSSKT----------------QTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLK---------KTIEPCEKCIKDA 361 (663)
T ss_pred cCCCC----------------ceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 53211 1111111 1 1 1 2334433331 2222332 2455566666654
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.. ...-...|+|+||+|++|++.++|.+.+.. ++....+|..++-.||++.|..
T Consensus 362 ~~--~~~~i~~ViLvGGssriP~v~~~l~~~f~~--------~~~~~~npdeaVA~GAAi~aa~ 415 (663)
T PTZ00400 362 GV--KKDELNDVILVGGMTRMPKVSETVKKIFGK--------EPSKGVNPDEAVAMGAAIQAGV 415 (663)
T ss_pred CC--CHHHCcEEEEECCccCChHHHHHHHHHhCC--------CcccCCCCccceeeccHHHHHh
Confidence 32 223357899999999999999999887732 2233456677888899998854
No 34
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.82 E-value=1.6e-08 Score=92.55 Aligned_cols=170 Identities=16% Similarity=0.177 Sum_probs=95.5
Q ss_pred ceeEEecCCCeeEEEEee--CCeec-cccceeecccHHHHHHHHHHHHHhc-----CCCCCc-hh----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYAL-PHAILRLDLAGRDLTDYLMKILTER-----GYSFTT-TA----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~-~~----~~~~~~~iK~~ 69 (229)
.-+|+|+|+++++|+.+. +|..- ..+.--..+||+++++.|.+++.++ +.+... .. -...+|..|+.
T Consensus 213 ~vlV~DlGGGT~DvSil~~~~g~~~V~at~Gd~~LGG~DfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~ 292 (657)
T PTZ00186 213 LIAVYDLGGGTFDISVLEIAGGVFEVKATNGDTHLGGEDFDLALSDYILEEFRKTSGIDLSKERMALQRVREAAEKAKCE 292 (657)
T ss_pred EEEEEECCCCeEEEEEEEEeCCEEEEEEecCCCCCCchhHHHHHHHHHHHHHhhhcCCCcccCHHHHHHHHHHHHHHHHH
Confidence 358999999999998874 56432 2222245899999999998877643 111110 00 11234555555
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC--CC---ceeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcCCHHH
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP--DG---QVITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKCDVDI 143 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp--dg---~~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~ 143 (229)
++..... ....++-.. || ..+.+..+.|. ..+.||+ .+.+.+.+++.....+
T Consensus 293 LS~~~~~------------~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~---------r~~~~v~~~L~~a~~~- 350 (657)
T PTZ00186 293 LSSAMET------------EVNLPFITANADGAQHIQMHISRSKFEGITQRLIE---------RSIAPCKQCMKDAGVE- 350 (657)
T ss_pred hCCCCce------------EEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC-
Confidence 5432100 000111111 12 12334443331 2233332 2344555555543322
Q ss_pred HHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 144 RKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 144 r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..-...|+|+||+|+||.+.+.|.+.+.. +.....+|..++-+||+++|..
T Consensus 351 -~~dId~VvLVGGssriP~V~~~l~~~fg~--------~~~~~~nPdeaVA~GAAi~a~~ 401 (657)
T PTZ00186 351 -LKEINDVVLVGGMTRMPKVVEEVKKFFQK--------DPFRGVNPDEAVALGAATLGGV 401 (657)
T ss_pred -hhhCCEEEEECCcccChHHHHHHHHHhCC--------CccccCCCchHHHHhHHHHHHH
Confidence 23346799999999999999999987732 1123345677888999999863
No 35
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.81 E-value=1.2e-08 Score=93.85 Aligned_cols=166 Identities=18% Similarity=0.232 Sum_probs=93.4
Q ss_pred ceeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-----CCCCCc-hh----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTT-TA----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~-~~----~~~~~~~iK~~ 69 (229)
.-+|+|+|+++++|+.+. +|.. +..+.-..++||+++++.|.+++.++ +.+... .. -...+|..|+.
T Consensus 225 ~vlV~DlGgGT~DvSi~~~~~~~~eVla~~gd~~LGG~dfD~~L~~~~~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~ 304 (673)
T PLN03184 225 TILVFDLGGGTFDVSVLEVGDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKDEGIDLLKDKQALQRLTEAAEKAKIE 304 (673)
T ss_pred EEEEEECCCCeEEEEEEEecCCEEEEEEecCCCccCHHHHHHHHHHHHHHHHHhhcCCCcccCHHHHHHHHHHHHHHHHh
Confidence 358999999999998873 2321 11122235899999999999887653 111110 00 01234555555
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC------CC-cee--eecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP------DG-QVI--TIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp------dg-~~i--~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++... ...+.+| +| ..+ .+..+.|. ..+.+++ .+.+.|.+++...
T Consensus 305 LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~---------r~~~~i~~~L~~a 359 (673)
T PLN03184 305 LSSLT----------------QTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLD---------RCKTPVENALRDA 359 (673)
T ss_pred cCCCC----------------cceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 44221 1111111 12 122 23333331 1222332 2445566666555
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..+. .=...|+|+||+|++|.+.++|.+.+.. .+....+|..++-.||++.|..
T Consensus 360 ~~~~--~dId~ViLvGGssriP~V~~~i~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 413 (673)
T PLN03184 360 KLSF--KDIDEVILVGGSTRIPAVQELVKKLTGK--------DPNVTVNPDEVVALGAAVQAGV 413 (673)
T ss_pred CCCh--hHccEEEEECCccccHHHHHHHHHHhCC--------CcccccCcchHHHHHHHHHHHH
Confidence 4322 2247899999999999999999987732 1222345567888999998753
No 36
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.81 E-value=2.4e-08 Score=90.81 Aligned_cols=167 Identities=20% Similarity=0.221 Sum_probs=94.8
Q ss_pred eeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-CCCCCchh-H----HHHHHHHHHhccccc
Q psy2717 4 RKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTER-GYSFTTTA-E----REIVRDIKEKLCYVA 74 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-~~~~~~~~-~----~~~~~~iK~~~~~v~ 74 (229)
-+|+|+|+++++|+.+. +|.. +..+.....+||+++++.|.+++.++ +.+..... . ...++..|+.++.-.
T Consensus 183 vlV~DlGgGT~DvSi~~~~~~~~~vla~~gd~~lGG~d~D~~l~~~l~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~ 262 (599)
T TIGR01991 183 YAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQLGISADLNPEDQRLLLQAARAAKEALTDAE 262 (599)
T ss_pred EEEEEcCCCeEEEEEEEEcCCeEEEEEEcCCCCCCHHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHHHHHHHHhCCCCc
Confidence 48999999999998773 4432 11122235899999999999998754 22211110 0 112344444433110
Q ss_pred ccHHHHHHHhhcCCCCcceEeCCCCce--eeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeE
Q psy2717 75 LDFEQEMATAAASTSLEKSYELPDGQV--ITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 152 (229)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~lpdg~~--i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIi 152 (229)
.....++. +|.. +.+..+.| |-++.|-+ ..+.+.|.+++..... ...-...|+
T Consensus 263 --------------~~~i~i~~-~g~~~~~~itr~ef---e~l~~~ll-----~~i~~~i~~~L~~a~~--~~~~id~Vi 317 (599)
T TIGR01991 263 --------------SVEVDFTL-DGKDFKGKLTRDEF---EALIQPLV-----QKTLSICRRALRDAGL--SVEEIKGVV 317 (599)
T ss_pred --------------eEEEEEEE-CCcEEEEEEeHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC--ChhhCCEEE
Confidence 01112222 3332 23333333 22222210 1245556666654422 122357799
Q ss_pred EecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 153 LSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 153 ltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
|+||+|++|++.++|.+.+.. .+....+|..++-.||++.|..
T Consensus 318 LvGGssriP~V~~~l~~~f~~--------~~~~~~npdeaVA~GAai~a~~ 360 (599)
T TIGR01991 318 LVGGSTRMPLVRRAVAELFGQ--------EPLTDIDPDQVVALGAAIQADL 360 (599)
T ss_pred EECCcCCChHHHHHHHHHhCC--------CCCCCCCCcHHHHHHHHHHHHH
Confidence 999999999999999987632 2233556778889999998854
No 37
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.74 E-value=3.6e-08 Score=89.90 Aligned_cols=164 Identities=17% Similarity=0.113 Sum_probs=91.2
Q ss_pred eeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhcC-CCCCch-h----HHHHHHHHHHhccccc
Q psy2717 4 RKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTERG-YSFTTT-A----EREIVRDIKEKLCYVA 74 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~~-~~~~~~-~----~~~~~~~iK~~~~~v~ 74 (229)
-+|+|+|+++++|+.+- .|.. +..+.--..+||+++++.|.+.+.++. .+.... . -...++..|+.++.-
T Consensus 203 vlV~DlGGGT~DvSv~~~~~~~~evlat~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~- 281 (616)
T PRK05183 203 IAVYDLGGGTFDISILRLSKGVFEVLATGGDSALGGDDFDHLLADWILEQAGLSPRLDPEDQRLLLDAARAAKEALSDA- 281 (616)
T ss_pred EEEEECCCCeEEEEEEEeeCCEEEEEEecCCCCcCHHHHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHHHHhcCCC-
Confidence 47999999999998873 3332 122223357999999999999887642 111100 0 011233444433211
Q ss_pred ccHHHHHHHhhcCCCCcceEeCCCCceeeecCccc-cccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEE
Q psy2717 75 LDFEQEMATAAASTSLEKSYELPDGQVITIGNERF-RCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVL 153 (229)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~lpdg~~i~~~~~r~-~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIil 153 (229)
....+.+++-.. .+..+.| ...+.++. .+.+.|.+++..... ...-...|+|
T Consensus 282 ---------------~~~~i~i~~~~~-~itr~efe~l~~~l~~---------~~~~~i~~~L~~a~~--~~~~i~~ViL 334 (616)
T PRK05183 282 ---------------DSVEVSVALWQG-EITREQFNALIAPLVK---------RTLLACRRALRDAGV--EADEVKEVVM 334 (616)
T ss_pred ---------------ceEEEEEecCCC-eEcHHHHHHHHHHHHH---------HHHHHHHHHHHHcCC--CcccCCEEEE
Confidence 112223322110 1222222 11122221 244555555554322 1122467999
Q ss_pred ecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 154 SGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 154 tGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
+||+|++|.+.++|.+.+.. .+....+|..++-.||++.|..
T Consensus 335 vGGssriP~v~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~a~~ 376 (616)
T PRK05183 335 VGGSTRVPLVREAVGEFFGR--------TPLTSIDPDKVVAIGAAIQADI 376 (616)
T ss_pred ECCcccChHHHHHHHHHhcc--------CcCcCCCchHHHHHHHHHHHHH
Confidence 99999999999999887632 2233456778888999998863
No 38
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.74 E-value=3.7e-08 Score=90.43 Aligned_cols=167 Identities=18% Similarity=0.228 Sum_probs=93.4
Q ss_pred eeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-----CCCCCchh-----HHHHHHHHHHhc
Q psy2717 4 RKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTTA-----EREIVRDIKEKL 70 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~~-----~~~~~~~iK~~~ 70 (229)
-+|+|+|+++++|+.+- +|.. +..+.--..+||+++++.|.+++.++ +.++.... -...++..|+.+
T Consensus 188 vlV~DlGgGT~dvsi~~~~~~~~~V~at~gd~~LGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~L 267 (653)
T PRK13411 188 ILVFDLGGGTFDVSILQLGDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEGIDLSQDKMALQRLREAAEKAKIEL 267 (653)
T ss_pred EEEEEcCCCeEEEEEEEEeCCEEEEEEEecCCCcCHHHHHHHHHHHHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhc
Confidence 48999999999998762 3322 22222234799999999998887643 11111100 112344555554
Q ss_pred ccccccHHHHHHHhhcCCCCcceEeC----CC---Cc--eeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCH
Q psy2717 71 CYVALDFEQEMATAAASTSLEKSYEL----PD---GQ--VITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDV 141 (229)
Q Consensus 71 ~~v~~~~~~~~~~~~~~~~~~~~~~l----pd---g~--~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~ 141 (229)
+.- ....+.+ .| +. .+.+..+.| |-++.|-+ ..+.+.|.+++.....
T Consensus 268 S~~----------------~~~~i~i~~~~~d~~~~~~~~~~itR~~f---e~l~~~l~-----~~~~~~i~~~L~~a~~ 323 (653)
T PRK13411 268 SSM----------------LTTSINLPFITADETGPKHLEMELTRAKF---EELTKDLV-----EATIEPMQQALKDAGL 323 (653)
T ss_pred CCC----------------CceEEEEeeeccCCCCCeeEEEEEcHHHH---HHHHHHHH-----HHHHHHHHHHHHHcCC
Confidence 321 1111111 11 11 223343333 22222210 1245566666655432
Q ss_pred HHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 142 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 142 d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..+-.+.|+|+||+|++|.+.++|.+.+.. .++....+|..++-.||++.|..
T Consensus 324 --~~~~id~ViLvGGssriP~v~~~l~~~f~~-------~~~~~~~npdeaVA~GAAi~aa~ 376 (653)
T PRK13411 324 --KPEDIDRVILVGGSTRIPAVQEAIQKFFGG-------KQPDRSVNPDEAVALGAAIQAGV 376 (653)
T ss_pred --CHHHCcEEEEECCCCCcchHHHHHHHHcCC-------cCcCCCCCchHHHHHHHHHHHHh
Confidence 233457899999999999999999877631 12333456677888899998853
No 39
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.68 E-value=4.7e-08 Score=89.78 Aligned_cols=167 Identities=16% Similarity=0.168 Sum_probs=96.4
Q ss_pred ceeEEecCCCeeEEEEee--CCeec-cccceeecccHHHHHHHHHHHHHhcC------CCCCc-hh----HHHHHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYAL-PHAILRLDLAGRDLTDYLMKILTERG------YSFTT-TA----EREIVRDIKE 68 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~~------~~~~~-~~----~~~~~~~iK~ 68 (229)
+-+|+|+|+++++|+.+. +|..- ..+.-...+||+++++.|.+++.++- .++.. .. -...++.+|+
T Consensus 195 ~vlv~D~GggT~dvsv~~~~~~~~~v~a~~gd~~lGG~d~D~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~ 274 (653)
T PTZ00009 195 NVLIFDLGGGTFDVSLLTIEDGIFEVKATAGDTHLGGEDFDNRLVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKR 274 (653)
T ss_pred EEEEEECCCCeEEEEEEEEeCCeEEEEEecCCCCCChHHHHHHHHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHHHH
Confidence 468999999999998873 44322 11122358999999999988876431 11111 00 1123455555
Q ss_pred hcccccccHHHHHHHhhcCCCCcceEeC---CCCc--eeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcCCHH
Q psy2717 69 KLCYVALDFEQEMATAAASTSLEKSYEL---PDGQ--VITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKCDVD 142 (229)
Q Consensus 69 ~~~~v~~~~~~~~~~~~~~~~~~~~~~l---pdg~--~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d 142 (229)
.++.. ....+.+ .++. .+.+..+.|. ..+.+|+ .+.+.|.++|..+..+
T Consensus 275 ~LS~~----------------~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~---------~~~~~i~~~L~~a~~~ 329 (653)
T PTZ00009 275 TLSSS----------------TQATIEIDSLFEGIDYNVTISRARFEELCGDYFR---------NTLQPVEKVLKDAGMD 329 (653)
T ss_pred hCCCC----------------ceEEEEEEeccCCceEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHcCCC
Confidence 54321 1122222 2332 2334444442 2233333 2455666777655433
Q ss_pred HHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 143 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 143 ~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
. .-.+.|+|+||+|++|.+.++|.+.+... ++....+|..++-.||++.|..
T Consensus 330 ~--~~i~~ViLvGGssriP~v~~~i~~~f~~~-------~~~~~~npdeaVA~GAa~~aa~ 381 (653)
T PTZ00009 330 K--RSVHEVVLVGGSTRIPKVQSLIKDFFNGK-------EPCKSINPDEAVAYGAAVQAAI 381 (653)
T ss_pred H--HHCcEEEEECCCCCChhHHHHHHHHhCCC-------CCCCCCCcchHHhhhhhhhHHH
Confidence 2 23578999999999999999998776321 2233445667888899988753
No 40
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.68 E-value=6.4e-08 Score=88.87 Aligned_cols=166 Identities=19% Similarity=0.222 Sum_probs=91.7
Q ss_pred ceeEEecCCCeeEEEEee--CCee-ccccceeecccHHHHHHHHHHHHHhc-----CCCCCch-h----HHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYG--NGYA-LPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-A----EREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~--~G~~-~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-~----~~~~~~~iK~~ 69 (229)
+-+|+|+|+++++|+.+. +|.. +..+.-...+||+++++.|.+.+.++ +.++... . -...++.+|+.
T Consensus 188 ~vlV~DlGgGT~Dvsv~~~~~g~~~V~at~gd~~lGG~dfD~~l~~~l~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~ 267 (668)
T PRK13410 188 TVLVFDLGGGTFDVSLLEVGNGVFEVKATSGDTQLGGNDFDKRIVDWLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIE 267 (668)
T ss_pred EEEEEECCCCeEEEEEEEEcCCeEEEEEeecCCCCChhHHHHHHHHHHHHHHHhhhCCCcccCHHHHHHHHHHHHHHHHh
Confidence 358999999999998873 3432 22222235799999999998887643 1111110 0 01233445554
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCC------CC-c--eeeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcC
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELP------DG-Q--VITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKC 139 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lp------dg-~--~i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~ 139 (229)
++... ...+.+| +| . ...+..+.|. ..+.++. .+.+.|.+++...
T Consensus 268 LS~~~----------------~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~---------r~~~~i~~~L~~a 322 (668)
T PRK13410 268 LSGVS----------------VTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLD---------RLLRPVKRALKDA 322 (668)
T ss_pred cCCCC----------------ceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHH---------HHHHHHHHHHHHc
Confidence 43211 1112221 11 1 1223333331 1222332 2445555555543
Q ss_pred CHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 140 ~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.. ...-...|+|+||+|++|.+.+.+.+.+.. .+....+|..++-+||++.|..
T Consensus 323 g~--~~~dId~VvLVGGssRiP~V~~~l~~~fg~--------~~~~~~npdeaVA~GAAi~aa~ 376 (668)
T PRK13410 323 GL--SPEDIDEVVLVGGSTRMPMVQQLVRTLIPR--------EPNQNVNPDEVVAVGAAIQAGI 376 (668)
T ss_pred CC--ChhhCcEEEEECCccccHHHHHHHHHHcCC--------CcccCCCCchHHHHhHHHHHHh
Confidence 21 223356799999999999999999876521 2223345667888999998864
No 41
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.63 E-value=2.4e-07 Score=78.85 Aligned_cols=118 Identities=14% Similarity=0.158 Sum_probs=77.4
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
.++||||+++|+++.+.+|.+.. .+.+++||+++++.+.+.+. + +.+.++++|.+..+.. ++..+
T Consensus 190 ~~lvdiG~~~t~l~i~~~g~~~~--~r~i~~G~~~i~~~i~~~~~-----~----~~~~Ae~~k~~~~~~~-~~~~~--- 254 (348)
T TIGR01175 190 AALVDIGATSSTLNLLHPGRMLF--TREVPFGTRQLTSELSRAYG-----L----NPEEAGEAKQQGGLPL-LYDPE--- 254 (348)
T ss_pred EEEEEECCCcEEEEEEECCeEEE--EEEeechHHHHHHHHHHHcC-----C----CHHHHHHHHhcCCCCC-chhHH---
Confidence 78999999999999999999885 47789999999998876542 1 2456778887543221 00000
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
+.+..+ ..|..-|.+++.-.-........+.|+||||++.++||
T Consensus 255 ---------------------------~~~~~~---------~~l~~eI~~~l~~~~~~~~~~~i~~I~LtGgga~~~gl 298 (348)
T TIGR01175 255 ---------------------------VLRRFK---------GELVDEIRRSLQFFTAQSGTNSLDGLVLAGGGATLSGL 298 (348)
T ss_pred ---------------------------HHHHHH---------HHHHHHHHHHHHhhcCCCCCcccceEEEECccccchhH
Confidence 000001 01334445555322111122235679999999999999
Q ss_pred HHHHHHHHH
Q psy2717 164 ADRMQKEIT 172 (229)
Q Consensus 164 ~~RL~~el~ 172 (229)
.+.|++++.
T Consensus 299 ~~~l~~~l~ 307 (348)
T TIGR01175 299 DAAIYQRLG 307 (348)
T ss_pred HHHHHHHHC
Confidence 999999994
No 42
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.56 E-value=1.4e-07 Score=85.98 Aligned_cols=168 Identities=21% Similarity=0.241 Sum_probs=97.1
Q ss_pred ceeEEecCCCeeEEEEe--eCCeec-cccceeecccHHHHHHHHHHHHHhc-----CCCCCch-----hHHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPY--GNGYAL-PHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-----AEREIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV--~~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-----~~~~~~~~iK~~ 69 (229)
+-+|+|+|+++++|+.+ .+|..- ........+||+++++.|.+++.++ +.+.... .-...++.+|+.
T Consensus 189 ~vlv~D~Gggt~dvs~~~~~~~~~~v~~~~~~~~lGG~~~D~~l~~~~~~~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~ 268 (602)
T PF00012_consen 189 TVLVVDFGGGTFDVSVVEFSNGQFEVLATAGDNNLGGRDFDEALAEYLLEKFKKKYKIDLRENPRAMARLLEAAEKAKEQ 268 (602)
T ss_dssp EEEEEEEESSEEEEEEEEEETTEEEEEEEEEETTCSHHHHHHHHHHHHHHHHHHHHSS-GTCSHHHHHHHHHHHHHHHHH
T ss_pred ceeccccccceEeeeehhcccccccccccccccccccceecceeeccccccccccccccccccccccccccccccccccc
Confidence 45899999999999887 355432 2222346899999999999988653 1111110 011234445555
Q ss_pred cccccccHHHHHHHhhcCCCCcceEe----CCCCce--eeecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcCCHH
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYE----LPDGQV--ITIGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKCDVD 142 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~----lpdg~~--i~~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d 142 (229)
++.-. .....+. .++|.. +.+..+.|. ..+.+++ .+.++|.+++..+...
T Consensus 269 Ls~~~--------------~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~---------~~~~~i~~~l~~~~~~ 325 (602)
T PF00012_consen 269 LSSND--------------NTEITISIESLYDDGEDFSITITREEFEELCEPLLE---------RIIEPIEKALKDAGLK 325 (602)
T ss_dssp TTTSS--------------SSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHH---------HTHHHHHHHHHHTT--
T ss_pred ccccc--------------ccccccccccccccccccccccccceeccccccccc---------cccccccccccccccc
Confidence 43210 1111111 122433 334444332 2233333 2566777777655332
Q ss_pred HHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 143 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 143 ~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..=...|+|+||+|.+|.+.+.|.+.+. -.+....+|..++-.||+++|..
T Consensus 326 --~~~i~~V~lvGG~sr~p~v~~~l~~~f~--------~~~~~~~~p~~aVA~GAa~~a~~ 376 (602)
T PF00012_consen 326 --KEDIDSVLLVGGSSRIPYVQEALKELFG--------KKISKSVNPDEAVARGAALYAAI 376 (602)
T ss_dssp --GGGESEEEEESGGGGSHHHHHHHHHHTT--------SEEB-SS-TTTHHHHHHHHHHHH
T ss_pred --ccccceeEEecCcccchhhhhhhhhccc--------cccccccccccccccccccchhh
Confidence 2334679999999999999999987763 13444556778888999998853
No 43
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=98.56 E-value=9e-07 Score=75.22 Aligned_cols=118 Identities=17% Similarity=0.275 Sum_probs=71.1
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
-++||||+..|.++-+.+|.++.. +.+++||+++++.+.+.+. .+.+.++.+|.... .+.+...
T Consensus 182 ~~lvdiG~~~t~~~i~~~g~~~f~--R~i~~G~~~l~~~i~~~~~---------i~~~~Ae~~k~~~~-l~~~~~~---- 245 (340)
T PF11104_consen 182 VALVDIGASSTTVIIFQNGKPIFS--RSIPIGGNDLTEAIARELG---------IDFEEAEELKRSGG-LPEEYDQ---- 245 (340)
T ss_dssp EEEEEE-SS-EEEEEEETTEEEEE--EEES-SHHHHHHHHHHHTT-----------HHHHHHHHHHT-------HH----
T ss_pred EEEEEecCCeEEEEEEECCEEEEE--EEEeeCHHHHHHHHHHhcC---------CCHHHHHHHHhcCC-CCcchHH----
Confidence 379999999999999999999854 7789999999999887532 12455666665432 1111000
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
.+.+..++ .|..-|..++.-.-......-.+.|+||||+|.++||
T Consensus 246 --------------------------~~l~~~~~---------~l~~EI~rsl~~y~~~~~~~~i~~I~L~Ggga~l~gL 290 (340)
T PF11104_consen 246 --------------------------DALRPFLE---------ELAREIRRSLDFYQSQSGGESIERIYLSGGGARLPGL 290 (340)
T ss_dssp --------------------------HHHHHHHH---------HHHHHHHHHHHHHHHH------SEEEEESGGGGSTTH
T ss_pred --------------------------HHHHHHHH---------HHHHHHHHHHHHHHhcCCCCCCCEEEEECCccchhhH
Confidence 00011111 1445555555432222233456779999999999999
Q ss_pred HHHHHHHHH
Q psy2717 164 ADRMQKEIT 172 (229)
Q Consensus 164 ~~RL~~el~ 172 (229)
.+.|.++|.
T Consensus 291 ~~~l~~~l~ 299 (340)
T PF11104_consen 291 AEYLSEELG 299 (340)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHHC
Confidence 999999993
No 44
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=98.41 E-value=2.7e-06 Score=72.36 Aligned_cols=47 Identities=4% Similarity=-0.022 Sum_probs=42.4
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhc
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTER 50 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~ 50 (229)
-+|||||+.+|+++.+.++.+.......++.|..++-+.+.+.+.++
T Consensus 187 ilvIDIG~~TtD~~v~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 233 (344)
T PRK13917 187 VSVIDFGSGTTDLDTIQNLKRVEEESFVIPKGTIDVYKRIASHISKK 233 (344)
T ss_pred EEEEEcCCCcEEEEEEeCcEEcccccccccchHHHHHHHHHHHHHhh
Confidence 48999999999999999999998888889999999999999999543
No 45
>PRK11678 putative chaperone; Provisional
Probab=98.38 E-value=1.7e-06 Score=75.94 Aligned_cols=62 Identities=24% Similarity=0.239 Sum_probs=41.0
Q ss_pred HHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 128 IHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 128 l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
+.++|.+++.+.... ...|+||||+|.+|++.+.+.+.+.. .++.. .++-.++-.|.++.|.
T Consensus 385 i~~~i~~~L~~a~~~-----~d~VvLvGGsSriP~V~~~l~~~fg~-------~~v~~-g~~~~sVa~Gla~~a~ 446 (450)
T PRK11678 385 ILELVQLALDQAQVK-----PDVIYLTGGSARSPLIRAALAQQLPG-------IPIVG-GDDFGSVTAGLARWAQ 446 (450)
T ss_pred HHHHHHHHHHHcCCC-----CCEEEEcCcccchHHHHHHHHHHCCC-------CcEEe-CCCcchHHHHHHHHHH
Confidence 445555555443321 25699999999999999998877621 22322 3445677789888774
No 46
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.09 E-value=2.8e-05 Score=64.21 Aligned_cols=118 Identities=14% Similarity=0.175 Sum_probs=76.9
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMAT 83 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~~~ 83 (229)
.+|+|||+..|.+..+++|.++.. +..++||+++++.+.+... + +.+.++++|.... .+.+|..+...
T Consensus 195 vav~~Igat~s~l~vi~~gk~ly~--r~~~~g~~Qlt~~i~r~~~-----L----~~~~a~~~k~~~~-~P~~y~~~vl~ 262 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKILYT--REVPVGTDQLTQEIQRAYS-----L----TEEKAEEIKRGGT-LPTDYGSEVLR 262 (354)
T ss_pred heeeeecccceEEEEEECCeeeeE--eeccCcHHHHHHHHHHHhC-----C----ChhHhHHHHhCCC-CCCchhHHHHH
Confidence 468999999999999999999975 7889999999998877542 2 1344566665432 22233222110
Q ss_pred hhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 84 AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 84 ~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
+ |. ..|.+-|.++|+---..--..-...|+|+||++.+.|+
T Consensus 263 ------------------------~-------f~--------~~l~~ei~Rslqfy~~~s~~~~id~i~LaGggA~l~gL 303 (354)
T COG4972 263 ------------------------P-------FL--------GELTQEIRRSLQFYLSQSEMVDIDQILLAGGGASLEGL 303 (354)
T ss_pred ------------------------H-------HH--------HHHHHHHHHHHHHHHhccccceeeEEEEecCCcchhhH
Confidence 0 10 12455555555421000001124579999999999999
Q ss_pred HHHHHHHHH
Q psy2717 164 ADRMQKEIT 172 (229)
Q Consensus 164 ~~RL~~el~ 172 (229)
.+-+.+.|.
T Consensus 304 ~~~i~qrl~ 312 (354)
T COG4972 304 AAAIQQRLS 312 (354)
T ss_pred HHHHHHHhC
Confidence 999999984
No 47
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.03 E-value=9.4e-06 Score=68.44 Aligned_cols=47 Identities=4% Similarity=-0.164 Sum_probs=42.0
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhc
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTER 50 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~ 50 (229)
-+|||||+.+|+++.+-++.+....+..++.|-..+.+.+++.|.++
T Consensus 169 ~lVIDIG~~TtD~~~~~~~~~~~~~s~s~~~G~~~~~~~I~~~i~~~ 215 (320)
T TIGR03739 169 SLIIDPGYFTFDWLVARGMRLVQKRSGSVNGGMSDIYRLLAAEISKD 215 (320)
T ss_pred EEEEecCCCeeeeehccCCEEcccccCCchhHHHHHHHHHHHHHHhh
Confidence 48999999999999888888888877788999999999999998765
No 48
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.00012 Score=66.45 Aligned_cols=167 Identities=16% Similarity=0.142 Sum_probs=87.3
Q ss_pred ceeEEecCCCeeEEEEeeC--C-eeccccceeecccHHHHHHHHHHHHHhcCC---CCCchhHH-------HHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPYGN--G-YALPHAILRLDLAGRDLTDYLMKILTERGY---SFTTTAER-------EIVRDIKEK 69 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~--G-~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~---~~~~~~~~-------~~~~~iK~~ 69 (229)
+=+|+|+|+++++++-|-= | +.+..+.....+||++++..|...+..+-. ......+. +.++..|+.
T Consensus 173 ~vlV~DlGGGTfDvSll~~~~g~~ev~at~gd~~LGGddfD~~l~~~~~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~ 252 (579)
T COG0443 173 TVLVYDLGGGTFDVSLLEIGDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGKGGIDLRSDKAALQRLREAAEKAKIE 252 (579)
T ss_pred EEEEEEcCCCCEEEEEEEEcCCEEEEeecCCCcccCchhHHHHHHHHHHHHhhccCCccccccHHHHHHHHHHHHHHHHH
Confidence 3489999999999988833 3 223334455789999999999888765311 01111111 233444444
Q ss_pred cccccccHHHHHHHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCH-----HHH
Q psy2717 70 LCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDV-----DIR 144 (229)
Q Consensus 70 ~~~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~-----d~r 144 (229)
++.... ....++.-++. +++.. .....-|++. +.+++.+++..|.. .++
T Consensus 253 LS~~~~--------------~~i~~~~~~~~-~~~~~---~ltR~~~E~l--------~~dll~r~~~~~~~al~~a~l~ 306 (579)
T COG0443 253 LSSATQ--------------TSINLPSIGGD-IDLLK---ELTRAKFEEL--------ILDLLERTIEPVEQALKDAGLE 306 (579)
T ss_pred cccccc--------------cccchhhcccc-chhhh---hhhHHHHHHH--------HHHHHHHHHHHHHHHHHHcCCC
Confidence 432211 01111111111 11111 1111112211 22333333332221 112
Q ss_pred HHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 145 KDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 145 ~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..=..-|+++||+|.||=..+.+.+.+. -......+|.-++-+||++.|..
T Consensus 307 ~~~I~~VilvGGstriP~V~~~v~~~f~--------~~~~~~inpdeava~GAa~qa~~ 357 (579)
T COG0443 307 KSDIDLVILVGGSTRIPAVQELVKEFFG--------KEPEKSINPDEAVALGAAIQAAV 357 (579)
T ss_pred hhhCceEEEccceeccHHHHHHHHHHhC--------ccccccCCccHHHHHHHHHHHHh
Confidence 2334559999999999999998887774 12333455666777787776653
No 49
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.72 E-value=0.00014 Score=59.17 Aligned_cols=43 Identities=28% Similarity=0.613 Sum_probs=36.8
Q ss_pred CeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHh
Q psy2717 150 NTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSIL 200 (229)
Q Consensus 150 nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsil 200 (229)
.|+++||.+..+++.++|.+.| ..++..++++.+.+-+|++++
T Consensus 206 ~Vvl~GGva~n~~l~~~l~~~l--------g~~v~~~~~~~~~~AlGaAl~ 248 (248)
T TIGR00241 206 PIVFTGGVSKNKGLVKALEKKL--------GMKVITPPEPQIVGAVGAALL 248 (248)
T ss_pred CEEEECccccCHHHHHHHHHHh--------CCcEEcCCCccHHHHHHHHhC
Confidence 6999999999999999999998 456777888878888898763
No 50
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=97.58 E-value=0.0001 Score=56.86 Aligned_cols=130 Identities=18% Similarity=0.221 Sum_probs=86.3
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhcccccccHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~~~~v~~~~~~~~ 81 (229)
..|-|||+|+++|-|+.+-+|.++..+- -+-||.+++-.|.- .++ .+.|.+|++|...-
T Consensus 140 ~dg~VVDiGGGTTGIsi~kkGkViy~AD--EpTGGtHmtLvlAG---~yg------i~~EeAE~~Kr~~k---------- 198 (277)
T COG4820 140 DDGGVVDIGGGTTGISIVKKGKVIYSAD--EPTGGTHMTLVLAG---NYG------ISLEEAEQYKRGHK---------- 198 (277)
T ss_pred CCCcEEEeCCCcceeEEEEcCcEEEecc--CCCCceeEEEEEec---ccC------cCHhHHHHhhhccc----------
Confidence 4688999999999999999999997643 57899888765432 112 23466777764320
Q ss_pred HHhhcCCCCcceEeCCCCceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCcc
Q psy2717 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYP 161 (229)
Q Consensus 82 ~~~~~~~~~~~~~~lpdg~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~ 161 (229)
++ .|-|-...... .-.++.+..-|..-++ ..+.|+||+++.|
T Consensus 199 ----------------~~------~Eif~~v~PV~---------eKMAeIv~~hie~~~i-------~dl~lvGGac~~~ 240 (277)
T COG4820 199 ----------------KG------EEIFPVVKPVY---------EKMAEIVARHIEGQGI-------TDLWLVGGACMQP 240 (277)
T ss_pred ----------------cc------hhcccchhHHH---------HHHHHHHHHHhccCCC-------cceEEecccccCc
Confidence 00 01111100111 1256666777766554 3589999999999
Q ss_pred chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhh
Q psy2717 162 GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 198 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggs 198 (229)
|+.+-++++| ..+|+.|..|.|..=+|-+
T Consensus 241 g~e~~Fe~~l--------~l~v~~P~~p~y~TPLgIA 269 (277)
T COG4820 241 GVEELFEKQL--------ALQVHLPQHPLYMTPLGIA 269 (277)
T ss_pred cHHHHHHHHh--------ccccccCCCcceechhhhh
Confidence 9999999999 5677777777776666633
No 51
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=97.29 E-value=0.00018 Score=60.58 Aligned_cols=48 Identities=10% Similarity=0.007 Sum_probs=34.3
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccc-eeecccHHHHHHHHHHHHHhc
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAI-LRLDLAGRDLTDYLMKILTER 50 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~-~~~~~GG~~l~~~l~~ll~~~ 50 (229)
+-+|||||+.+|+++.|.++....+.+ ...+.|-..+.+.+++.|.+.
T Consensus 165 ~~lVVDIGG~T~Dv~~v~~~~~~~~~~~~~~~~Gvs~~~~~I~~~l~~~ 213 (318)
T PF06406_consen 165 SVLVVDIGGRTTDVAVVRGGLPDISKCSGTPEIGVSDLYDAIAQALRSA 213 (318)
T ss_dssp EEEEEEE-SS-EEEEEEEGGG--EEEEEEETTSSTHHHHHHHHHHTT--
T ss_pred cEEEEEcCCCeEEeeeecCCccccchhccCCchhHHHHHHHHHHHHHHh
Confidence 568999999999999998766544333 345789999999999988763
No 52
>KOG0100|consensus
Probab=96.63 E-value=0.019 Score=49.17 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=31.1
Q ss_pred eeEEecCCCeeEEEE--eeCCeec-cccceeecccHHHHHHHHHHHHHh
Q psy2717 4 RKLSTVSLHNKYSNP--YGNGYAL-PHAILRLDLAGRDLTDYLMKILTE 49 (229)
Q Consensus 4 glVVDiG~~~t~v~p--V~~G~~~-~~~~~~~~~GG~~l~~~l~~ll~~ 49 (229)
=+|.|.|+++-+|+- |-+|..- ..+---..+||.+.++++.+++.+
T Consensus 227 ilVfDLGGGTFDVSlLtIdnGVFeVlaTnGDThLGGEDFD~rvm~~fik 275 (663)
T KOG0100|consen 227 ILVFDLGGGTFDVSLLTIDNGVFEVLATNGDTHLGGEDFDQRVMEYFIK 275 (663)
T ss_pred EEEEEcCCceEEEEEEEEcCceEEEEecCCCcccCccchHHHHHHHHHH
Confidence 379999999988754 4555421 111223579999999888777643
No 53
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.15 E-value=0.0033 Score=54.05 Aligned_cols=48 Identities=25% Similarity=0.512 Sum_probs=42.0
Q ss_pred hhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 147 LYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 147 l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
+-+.|+++||.++.+|+.+.|.+.| ..+++.|++|++..-+||+++|+
T Consensus 355 i~~~VvftGGva~N~gvv~ale~~L--------g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 355 VREPVILVGGTSLIEGLVKALGDLL--------GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred CCCcEEEECChhhhHHHHHHHHHHh--------CCcEEECCcccHHHHHHHHHHhc
Confidence 3445999999999999999999999 45677799999999999999984
No 54
>KOG0101|consensus
Probab=96.14 E-value=0.032 Score=50.55 Aligned_cols=168 Identities=17% Similarity=0.184 Sum_probs=87.9
Q ss_pred eEEecCCCeeEEEEe-eC-Ce-eccccceeecccHHHHHHHHHHHHHhc-----CCCCCch-----hHHHHHHHHHHhcc
Q psy2717 5 KLSTVSLHNKYSNPY-GN-GY-ALPHAILRLDLAGRDLTDYLMKILTER-----GYSFTTT-----AEREIVRDIKEKLC 71 (229)
Q Consensus 5 lVVDiG~~~t~v~pV-~~-G~-~~~~~~~~~~~GG~~l~~~l~~ll~~~-----~~~~~~~-----~~~~~~~~iK~~~~ 71 (229)
+|.|.|+++.+|.++ .+ |. .+....--.++||.++++.|.+.+... +.+.... .-+..+|..|..+.
T Consensus 200 lI~DlGggtfdvs~l~i~gG~~~vkat~gd~~lGGedf~~~l~~h~~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS 279 (620)
T KOG0101|consen 200 LIFDLGGGTFDVSVLSLEGGIFEVKATAGDTHLGGEDFDNKLVNHFAAEFKRKAGKDIGGNARALRRLRTACERAKRTLS 279 (620)
T ss_pred EEEEcCCCceeeeeEEeccchhhhhhhcccccccchhhhHHHHHHHHHHHHHhhccccccchHHHHHHHHHHHHHHhhhc
Confidence 899999999999888 33 32 223333346899999999888776432 1111000 01122334444432
Q ss_pred cccccHHHHHHHhhcCCCCcceEeCCCCceee--ecCcccc-ccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhh
Q psy2717 72 YVALDFEQEMATAAASTSLEKSYELPDGQVIT--IGNERFR-CPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLY 148 (229)
Q Consensus 72 ~v~~~~~~~~~~~~~~~~~~~~~~lpdg~~i~--~~~~r~~-~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~ 148 (229)
-... .. ...=.|-+|..+. +...||. ...-||.. ..+.+..++...-. -+.-.
T Consensus 280 ~~~~---~~----------i~vdsL~~g~d~~~~itrarfe~l~~dlf~~---------~~~~v~~~L~da~~--dk~~i 335 (620)
T KOG0101|consen 280 SSTQ---AS----------IEIDSLYEGIDFYTSITRARFEELNADLFRS---------TLEPVEKALKDAKL--DKSDI 335 (620)
T ss_pred cccc---ce----------eccchhhccccccceeehhhhhhhhhHHHHH---------HHHHHHHHHHhhcc--CccCC
Confidence 1110 00 0000123333322 2233332 23445542 23334444443221 12234
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.-|+|+||+|.+|.+..-+++=+.. -.+..+-+|.-.+-.||++-|.+
T Consensus 336 ~~vvlVGGstriPk~~~ll~d~f~~-------k~~~~sinpDeavA~GAavqaa~ 383 (620)
T KOG0101|consen 336 DEVVLVGGSTRIPKVQKLLEDFFNG-------KELNKSINPDEAVAYGAAVQAAI 383 (620)
T ss_pred ceeEEecCcccchHHHHHHHHHhcc-------cccccCCCHHHHHHhhHHHHhhh
Confidence 5699999999999998877765532 12223445666777888887765
No 55
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=95.84 E-value=0.0057 Score=50.56 Aligned_cols=49 Identities=16% Similarity=0.406 Sum_probs=40.5
Q ss_pred HhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEE-CCCCCccceehhhhHhhc
Q psy2717 146 DLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKII-APPERKYSVWIGGSILAS 202 (229)
Q Consensus 146 ~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~-~~~~~~~~~w~Ggsila~ 202 (229)
.+-..|+++||.+.-+|+.+.|+++| ..++. .|++|++..-+||+++|.
T Consensus 238 ~i~~~v~~~GGva~N~~l~~al~~~L--------g~~v~~~p~~p~~~GAlGAAL~A~ 287 (293)
T TIGR03192 238 GVEEGFFITGGIAKNPGVVKRIERIL--------GIKAVDTKIDSQIAGALGAALFGY 287 (293)
T ss_pred CCCCCEEEECcccccHHHHHHHHHHh--------CCCceeCCCCccHHHHHHHHHHHH
Confidence 44567999999999999999999999 33444 466789999999999983
No 56
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=95.50 E-value=0.014 Score=47.52 Aligned_cols=50 Identities=16% Similarity=0.387 Sum_probs=40.1
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
.+|+++||.++-+|+.+.|+++|... ...+.+..+++|++..-+||++++
T Consensus 213 ~~v~~~GGva~n~~~~~~le~~l~~~---~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 213 GTVLCTGGLALDAGLLEALKDAIQEA---KMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred CcEEEECcccccHHHHHHHHHHhccC---CcceEecCCCcchHHHHHHHHHcC
Confidence 36999999999999999999999432 114556667889999999999875
No 57
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=95.30 E-value=0.015 Score=49.39 Aligned_cols=44 Identities=25% Similarity=0.468 Sum_probs=41.5
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
|+++||+++..++.+-+++.+ ..+|+.|+.+++..-+||+++++
T Consensus 346 iv~~GGva~n~av~~ale~~l--------g~~V~vP~~~ql~GAiGAAL~a~ 389 (396)
T COG1924 346 IVLQGGVALNKAVVRALEDLL--------GRKVIVPPYAQLMGAIGAALIAK 389 (396)
T ss_pred EEEECcchhhHHHHHHHHHHh--------CCeeecCCccchhhHHHHHHHHh
Confidence 999999999999999999999 67899999999999999999985
No 58
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=95.27 E-value=0.11 Score=37.20 Aligned_cols=58 Identities=16% Similarity=0.097 Sum_probs=40.3
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceeeccc--------HHHHH--HHHHHHHHhcCCCCCchhHHHHHHHH-HHhcccc
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRLDLA--------GRDLT--DYLMKILTERGYSFTTTAEREIVRDI-KEKLCYV 73 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~~~G--------G~~l~--~~l~~ll~~~~~~~~~~~~~~~~~~i-K~~~~~v 73 (229)
++||||+++|.++...++.... ...+++| |.+++ +.+.+-|+.- .+.+|++ |.++..+
T Consensus 2 ~~iDiGs~~~~~~i~~~~~~~~--~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a---------~~~AE~~~k~~i~~v 70 (120)
T PF14450_consen 2 VVIDIGSSKTKVAIAEDGSDGY--IRVLGVGEVPSKGIKGGHITDIEDISKAIKIA---------IEEAERLAKCEIGSV 70 (120)
T ss_dssp EEEEE-SSSEEEEEEETTEEEE--EEEES----------HHHHH--HHHHHHHT-----------HHHHHHH-HHHH--S
T ss_pred EEEEcCCCcEEEEEEEeCCCCc--EEEEEEecccccccCCCEEEEHHHHHHHHHHH---------HHHHHHHhCCeeeEE
Confidence 6899999999999998887775 4668999 99999 8888777643 3456777 6665543
No 59
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=95.07 E-value=0.025 Score=48.56 Aligned_cols=52 Identities=19% Similarity=0.293 Sum_probs=42.6
Q ss_pred hhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 147 LYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 147 l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
+-..|+++||.++-+||...|.+.|....+ ..+|+.|++|++..-+||+++|
T Consensus 381 i~~~VvftGGvA~N~gvv~aLe~~L~~~~~---~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 381 ITDQFTFTGGVAKNEAAVKELRKLIKENYG---EVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred CCCCEEEECCccccHHHHHHHHHHHccccC---CCeEecCCCccHHHHHHHHHhC
Confidence 456799999999999999999999954322 2467778899999999999875
No 60
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=94.90 E-value=0.014 Score=51.16 Aligned_cols=50 Identities=16% Similarity=0.118 Sum_probs=39.3
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHH-----------HHHHHHHhcCCCC
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTD-----------YLMKILTERGYSF 54 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~-----------~l~~ll~~~~~~~ 54 (229)
.-++||||+++|+++.+.+|.++.. ..+++||+++|. ..+.++.+.+.++
T Consensus 147 gVa~IDIGgGTT~iaVf~~G~l~~T--~~l~vGG~~IT~D~~~~i~yis~~~~~l~~~~~~~~ 207 (475)
T PRK10719 147 RVLNIDIGGGTANYALFDAGKVIDT--ACLNVGGRLIETDSQGRVTYISPPGQMILDELGLAI 207 (475)
T ss_pred ceEEEEeCCCceEEEEEECCEEEEE--EEEecccceEEECCCCCEEEEChHHHHHHHHcCCCc
Confidence 4589999999999999999999976 448999997765 3566666665443
No 61
>PRK13317 pantothenate kinase; Provisional
Probab=94.81 E-value=0.041 Score=45.43 Aligned_cols=51 Identities=24% Similarity=0.169 Sum_probs=41.9
Q ss_pred hhcCeEEec-CCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 147 LYANTVLSG-GTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 147 l~~nIiltG-G~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
-.++|+++| |.+..|++.++|.+.++. ...+++.|+++++..-+||++++.
T Consensus 222 ~~~~Ivf~G~gla~n~~l~~~l~~~l~~-----~~~~~~~p~~~~~~gAlGAaL~a~ 273 (277)
T PRK13317 222 NIENIVYIGSTLTNNPLLQEIIESYTKL-----RNCTPIFLENGGYSGAIGALLLAT 273 (277)
T ss_pred CCCeEEEECcccccCHHHHHHHHHHHhc-----CCceEEecCCCchhHHHHHHHHhh
Confidence 347899999 799999999999987742 145677788899999999998874
No 62
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=93.45 E-value=0.16 Score=42.04 Aligned_cols=40 Identities=15% Similarity=0.085 Sum_probs=32.7
Q ss_pred cceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHH
Q psy2717 2 ATRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYL 43 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l 43 (229)
..++|+|||+++|.++.+.+|.+... ..+|+|.-.+++.+
T Consensus 112 ~~~lviDIGGGStEl~~~~~~~~~~~--~Sl~lG~vrl~e~~ 151 (285)
T PF02541_consen 112 KNGLVIDIGGGSTELILFENGKVVFS--QSLPLGAVRLTERF 151 (285)
T ss_dssp SSEEEEEEESSEEEEEEEETTEEEEE--EEES--HHHHHHHH
T ss_pred CCEEEEEECCCceEEEEEECCeeeEe--eeeehHHHHHHHHH
Confidence 36899999999999999999998853 67899998888765
No 63
>KOG0104|consensus
Probab=91.96 E-value=2.1 Score=39.93 Aligned_cols=45 Identities=13% Similarity=0.041 Sum_probs=31.1
Q ss_pred eEEecCCCeeEEEEeeCCee----cc---ccce------eecccHHHHHHHHHHHHHh
Q psy2717 5 KLSTVSLHNKYSNPYGNGYA----LP---HAIL------RLDLAGRDLTDYLMKILTE 49 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~----~~---~~~~------~~~~GG~~l~~~l~~ll~~ 49 (229)
+|-|+|+++|..+.|.--.+ .. ..++ ...+||..++..|+.+|.+
T Consensus 218 i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLGG~e~~~rLr~~l~~ 275 (902)
T KOG0104|consen 218 IFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLGGLEMTMRLRDHLAN 275 (902)
T ss_pred EEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccchHHHHHHHHHHHHH
Confidence 68899999999988832111 10 0111 1368999999999999875
No 64
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=91.72 E-value=0.18 Score=41.92 Aligned_cols=23 Identities=4% Similarity=-0.113 Sum_probs=19.0
Q ss_pred ceeEEecCCCeeEEEEeeCCeec
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYAL 25 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~ 25 (229)
.+++||||+.+|+|.+|.+|.+.
T Consensus 78 ~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 78 NAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp SEEEEEE-SS-EEEEEEETTEE-
T ss_pred CEEEEeCCCCEEEEEEEECCeee
Confidence 57999999999999999999986
No 65
>KOG0103|consensus
Probab=91.53 E-value=1.3 Score=40.67 Aligned_cols=46 Identities=17% Similarity=0.179 Sum_probs=33.1
Q ss_pred eeEEecCCCeeEEEEe-eC-Ce--eccccceeecccHHHHHHHHHHHHHhc
Q psy2717 4 RKLSTVSLHNKYSNPY-GN-GY--ALPHAILRLDLAGRDLTDYLMKILTER 50 (229)
Q Consensus 4 glVVDiG~~~t~v~pV-~~-G~--~~~~~~~~~~~GG~~l~~~l~~ll~~~ 50 (229)
=+.||+|++.++++.. +. |. ++.++.. -.+||++.++.|.+.+.+.
T Consensus 198 v~fvD~GHS~~q~si~aF~kG~lkvl~ta~D-~~lGgr~fDe~L~~hfa~e 247 (727)
T KOG0103|consen 198 VVFVDIGHSSYQVSIAAFTKGKLKVLATAFD-RKLGGRDFDEALIDHFAKE 247 (727)
T ss_pred EEEEecccccceeeeeeeccCcceeeeeecc-cccccchHHHHHHHHHHHH
Confidence 3679999999998766 22 32 3333333 2799999999999888754
No 66
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=89.08 E-value=0.37 Score=40.55 Aligned_cols=25 Identities=8% Similarity=-0.028 Sum_probs=22.8
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccc
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPH 27 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~ 27 (229)
.++++|||+.+|+|+||.+|.+...
T Consensus 129 ~~I~~DmGGTTtDi~~i~~G~p~~~ 153 (318)
T TIGR03123 129 ECLFVDMGSTTTDIIPIIDGEVAAK 153 (318)
T ss_pred CEEEEEcCccceeeEEecCCEeeee
Confidence 5799999999999999999998854
No 67
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=88.88 E-value=0.61 Score=41.88 Aligned_cols=38 Identities=8% Similarity=-0.009 Sum_probs=31.4
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDY 42 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~ 42 (229)
+++|||||+++|.++-+-+|.+.. ...+++|.-.+++.
T Consensus 133 ~~lviDIGGGStEl~~~~~~~~~~--~~Sl~lG~vrl~e~ 170 (496)
T PRK11031 133 QRLVVDIGGASTELVTGTGAQATS--LFSLSMGCVTWLER 170 (496)
T ss_pred CEEEEEecCCeeeEEEecCCceee--eeEEeccchHHHHH
Confidence 479999999999999998888764 46789998877654
No 68
>KOG0102|consensus
Probab=88.66 E-value=1.7 Score=38.99 Aligned_cols=144 Identities=17% Similarity=0.225 Sum_probs=76.7
Q ss_pred eeEEecCCCeeEEEE--eeCCeecc-ccceeecccHHHHHHHHHHHHHhcC---CCCCchhHHHHHHHHHHhcccccccH
Q psy2717 4 RKLSTVSLHNKYSNP--YGNGYALP-HAILRLDLAGRDLTDYLMKILTERG---YSFTTTAEREIVRDIKEKLCYVALDF 77 (229)
Q Consensus 4 glVVDiG~~~t~v~p--V~~G~~~~-~~~~~~~~GG~~l~~~l~~ll~~~~---~~~~~~~~~~~~~~iK~~~~~v~~~~ 77 (229)
-.|-|+|+++.+|.- |.+|...- .+-.....||.+++.++..++-..- .......+...+..+++..
T Consensus 214 iaV~dLgggtfdisilei~~gvfevksTngdtflggedfd~~~~~~~v~~fk~~~gidl~kd~~a~qrl~eaa------- 286 (640)
T KOG0102|consen 214 IAVFDLGGGTFDISILEIEDGVFEVKSTNGDTHLGGEDFDNALVRFIVSEFKKEEGIDLTKDRMALQRLREAA------- 286 (640)
T ss_pred eEEEEcCCceeeeeeehhccceeEEEeccCccccChhHHHHHHHHHHHHhhhcccCcchhhhHHHHHHHHHHH-------
Confidence 368899999988755 47776442 2334567899999999999886431 1122233444455555431
Q ss_pred HHHHHHhhcCCCCcceEeCC----CC---ceeeecCccccccccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHh---
Q psy2717 78 EQEMATAAASTSLEKSYELP----DG---QVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDL--- 147 (229)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~lp----dg---~~i~~~~~r~~~~E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l--- 147 (229)
|-.+...+........+| |. +.+.+...|-. |. .-++.+|.+.|.-|-.++|..=
T Consensus 287 --EkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~e-----fe--------~~v~~lI~Rti~p~~~aL~dA~~~~ 351 (640)
T KOG0102|consen 287 --EKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGE-----FE--------ELVPSLIARTIEPCKKALRDASLSS 351 (640)
T ss_pred --HhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHH-----HH--------HhhHHHHHhhhhHHHHHHHhccCCh
Confidence 101111111111222222 21 22333222211 11 1145566666655544444322
Q ss_pred --hcCeEEecCCCCccchHHHHHH
Q psy2717 148 --YANTVLSGGTTMYPGIADRMQK 169 (229)
Q Consensus 148 --~~nIiltGG~s~i~Gl~~RL~~ 169 (229)
.+-|+|+||.+.+|-..+.+..
T Consensus 352 ~di~EV~lvggmtrmpkv~s~V~e 375 (640)
T KOG0102|consen 352 SDINEVILVGGMTRMPKVQSTVKE 375 (640)
T ss_pred hhhhhhhhhcchhhcHHHHHHHHH
Confidence 3459999999999988877654
No 69
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=87.84 E-value=0.63 Score=41.07 Aligned_cols=48 Identities=21% Similarity=0.323 Sum_probs=38.9
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceeecccHH-----------HHHHHHHHHHHhcCCCC
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRLDLAGR-----------DLTDYLMKILTERGYSF 54 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~-----------~l~~~l~~ll~~~~~~~ 54 (229)
+=+|||+++|.++-+-+|.++..++ +++||+ .+...++.++.+.+.++
T Consensus 146 ~NiDIGGGTtN~avf~~G~v~~T~c--l~IGGRLi~~d~~g~i~yis~~~~~l~~~~~~~~ 204 (473)
T PF06277_consen 146 ANIDIGGGTTNIAVFDNGEVIDTAC--LDIGGRLIEFDPDGRITYISPPIQRLLEELGLEL 204 (473)
T ss_pred EEEEeCCCceeEEEEECCEEEEEEE--EeeccEEEEEcCCCcEEEECHHHHHHHHHhCCCC
Confidence 3489999999999999999998766 789997 46677778888776543
No 70
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=87.37 E-value=0.073 Score=43.68 Aligned_cols=48 Identities=29% Similarity=0.471 Sum_probs=34.6
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|+++||...-..+.+.|.+.|++..+.. ++..+.+|.+.+..||.++|
T Consensus 224 v~l~GGv~~~~~~~~~l~~~l~~~~~~~---~~~~~~~~~~~~a~GAallA 271 (271)
T PF01869_consen 224 VVLSGGVFKNSPLVKALRDALKEKLPKV---PIIIPVEPQYDPAYGAALLA 271 (271)
T ss_dssp EEEESGGGGCHHHHHHHGGGS-HHHHCC---TCECECCGSSHHHHHHHHHH
T ss_pred EEEECCccCchHHHHHHHHHHHHhcCCC---ceEECCCCCccHHHHHHHhC
Confidence 9999999888777777766665554432 23345567899999999886
No 71
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=86.53 E-value=0.64 Score=38.85 Aligned_cols=39 Identities=10% Similarity=-0.158 Sum_probs=33.0
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYL 43 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l 43 (229)
.++|+|+|+++|.++-+.+|.+.. ...+|+|.-.+++.+
T Consensus 126 ~~~v~DiGGGSte~~~~~~~~~~~--~~Sl~lG~vrl~e~f 164 (300)
T TIGR03706 126 DGLVVDIGGGSTELILGKDFEPGE--GVSLPLGCVRLTEQF 164 (300)
T ss_pred CcEEEEecCCeEEEEEecCCCEeE--EEEEccceEEhHHhh
Confidence 469999999999999998887764 467899998888765
No 72
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=86.18 E-value=0.52 Score=38.24 Aligned_cols=21 Identities=14% Similarity=0.080 Sum_probs=19.7
Q ss_pred ceeEEecCCCeeEEEEeeCCe
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGY 23 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~ 23 (229)
|.+.||+|..+|+|.||.+|.
T Consensus 131 sci~VD~GSTTtDIIPi~~ge 151 (330)
T COG1548 131 SCILVDMGSTTTDIIPIKDGE 151 (330)
T ss_pred ceEEEecCCcccceEeecchh
Confidence 578999999999999999997
No 73
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=83.54 E-value=3 Score=34.41 Aligned_cols=54 Identities=20% Similarity=0.213 Sum_probs=35.6
Q ss_pred eEEecCCCeeEEEEee-CCeeccccceeecccHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q psy2717 5 KLSTVSLHNKYSNPYG-NGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEK 69 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~-~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~~~~~~~~~~~~~~~iK~~ 69 (229)
.|+|+|+++|+.+-|- +|.+.. .++-=+|+-+|..+..-|- ..+++++|+||..
T Consensus 137 aIlDmG~GSTDAsii~~~g~v~~---iHlAGAG~mVTmlI~sELG--------l~d~~lAE~IKky 191 (332)
T PF08841_consen 137 AILDMGGGSTDASIINRDGEVTA---IHLAGAGNMVTMLINSELG--------LEDRELAEDIKKY 191 (332)
T ss_dssp EEEEE-SSEEEEEEE-TTS-EEE---EEEE-SHHHHHHHHHHHCT---------S-HHHHHHHHHS
T ss_pred EEEecCCCcccHHHhCCCCcEEE---EEecCCchhhHHHHHHhhC--------CCCHHHHHHhhhc
Confidence 4899999999998884 444432 4456678889987765443 2357889999974
No 74
>PRK10854 exopolyphosphatase; Provisional
Probab=82.70 E-value=1.3 Score=39.89 Aligned_cols=37 Identities=3% Similarity=-0.202 Sum_probs=29.2
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTD 41 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~ 41 (229)
.++|||||+++|.++-+-+|.+... ...++|.-.+++
T Consensus 138 ~~lvvDIGGGStEl~~~~~~~~~~~--~S~~lG~vrl~e 174 (513)
T PRK10854 138 RKLVIDIGGGSTELVIGENFEPILV--ESRRMGCVSFAQ 174 (513)
T ss_pred CeEEEEeCCCeEEEEEecCCCeeEe--EEEecceeeHHh
Confidence 4899999999999999988875543 445788766666
No 75
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=80.25 E-value=1.2 Score=40.00 Aligned_cols=39 Identities=13% Similarity=-0.090 Sum_probs=28.4
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYL 43 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l 43 (229)
.++|+|||+++|.++-+-+..+.. ...+++|.-.+++.+
T Consensus 130 ~~lv~DIGGGStEl~~g~~~~~~~--~~Sl~~G~v~lt~~~ 168 (492)
T COG0248 130 DGLVIDIGGGSTELVLGDNFEIGL--LISLPLGCVRLTERF 168 (492)
T ss_pred CEEEEEecCCeEEEEEecCCccce--eEEeecceEEeehhh
Confidence 589999999999999887665553 355677755554443
No 76
>COG2441 Predicted butyrate kinase [Energy production and conversion]
Probab=75.46 E-value=5.7 Score=32.79 Aligned_cols=45 Identities=13% Similarity=0.025 Sum_probs=31.6
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceee----cccHHHHHHHHHHHHHh
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRL----DLAGRDLTDYLMKILTE 49 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~----~~GG~~l~~~l~~ll~~ 49 (229)
+.|.+|..-|.++.|.+|.++..-.-+. -.||-.++..+.-.|.+
T Consensus 166 IavE~G~aytaavaV~nGkIVDGmgGttgf~gylg~g~MD~ElAYaLa~ 214 (374)
T COG2441 166 IAVEIGFAYTAAVAVKNGKIVDGMGGTTGFTGYLGGGAMDGELAYALAN 214 (374)
T ss_pred HHHhhhccceeEEEEECCEEEeccCCccCcccccccccccHHHHHHHHH
Confidence 4578999999999999999996533222 34555566666655553
No 77
>PF03702 UPF0075: Uncharacterised protein family (UPF0075); InterPro: IPR005338 Anhydro-N-acetylmuramic acid kinase catalyzes the specific phosphorylation of 1,6-anhydro-N-acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. It is also required for the utilisation of anhMurNAc, either imported from the medium, or derived from its own cell wall murein, and in so doing plays a role in cell wall recycling [, ]. ; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0006040 amino sugar metabolic process, 0009254 peptidoglycan turnover; PDB: 3QBX_B 3QBW_A 3CQY_B.
Probab=71.64 E-value=2.8 Score=36.12 Aligned_cols=25 Identities=20% Similarity=0.398 Sum_probs=20.0
Q ss_pred hcCeEEecCCCCccchHHHHHHHHH
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEIT 172 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~ 172 (229)
...|++|||++.=+-|.+||++.+.
T Consensus 285 ~~~v~v~GGGa~N~~L~~~L~~~l~ 309 (364)
T PF03702_consen 285 PDEVYVCGGGARNPFLMERLQERLP 309 (364)
T ss_dssp -EEEEEESGGGG-HHHHHHHHHH-T
T ss_pred CceEEEECCCcCCHHHHHHHHhhCC
Confidence 3469999999999999999999884
No 78
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=70.76 E-value=8.4 Score=31.78 Aligned_cols=50 Identities=18% Similarity=0.286 Sum_probs=31.2
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhh
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|+|.|+.+..+-|-+++.+.++.... ...+++..+.....++-+||+.++
T Consensus 237 IvlgG~~~~~~~~~~~i~~~l~~~~~-~~~~~i~~s~~~~~~~~~GAa~~~ 286 (291)
T PRK05082 237 VVLGGSVGLAEGYLELVQAYLAQEPA-IYHVPLLAAHYRHDAGLLGAALWA 286 (291)
T ss_pred EEEcCccccHHHHHHHHHHHHHhccc-ccCCeEEECccCCchhhhhHHHHh
Confidence 77777766666677777777766422 113445444444566777888765
No 79
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=64.82 E-value=6.2 Score=30.32 Aligned_cols=47 Identities=17% Similarity=0.273 Sum_probs=33.9
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|+++||.++-+-+.+.+.+-+. .+|..++. ...+-+|++++|..
T Consensus 150 ~~~i~~~GG~~~n~~~~q~~Advl~--------~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 150 IRRIRVSGGGAKNPLWMQILADVLG--------RPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp ESEEEEESGGGGSHHHHHHHHHHHT--------SEEEEESS-STHHHHHHHHHHHH
T ss_pred ceeeEeccccccChHHHHHHHHHhC--------CceEeCCC-CchHHHHHHHHHHh
Confidence 5669999999999999888887773 34443333 34566899988753
No 80
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=63.65 E-value=13 Score=30.82 Aligned_cols=51 Identities=20% Similarity=0.270 Sum_probs=30.7
Q ss_pred eEEecCCCCccchHHHHHHHHHhhC-CCCCeEEEECCCCCccceehhhhHhh
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALA-PSTIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~-~~~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|+|.||.+..+-|.++|.+.++... +...++.+........++-+||+.++
T Consensus 249 IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~~ 300 (303)
T PRK13310 249 VVLGGGLSNFDAIYEQLPKRLPRHLLPVARVPRIEKARHGDAGGVRGAAFLH 300 (303)
T ss_pred EEECCcccChHHHHHHHHHHHHHHhcccccCceEEEcccCchHHHHhHHHHh
Confidence 6676666666777788888887543 22223344444434455667887765
No 81
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=61.54 E-value=10 Score=31.34 Aligned_cols=68 Identities=13% Similarity=0.022 Sum_probs=44.5
Q ss_pred CHHHHHHHHHhcCCH-HHHHHhhcCeEEecC-CCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhH
Q psy2717 127 GIHETVYNSIMKCDV-DIRKDLYANTVLSGG-TTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 199 (229)
Q Consensus 127 ~l~~~I~~si~~~~~-d~r~~l~~nIiltGG-~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsi 199 (229)
+|-+||.+.|..... --+..-.++|+++|| .+..|.+.+++..-+.-. ..+++.+.+..+..-+||.+
T Consensus 209 SLl~mV~~nIg~lA~~~a~~~~~~~IvF~Gg~L~~~~~l~~~~~~~~~~~-----~~~~ifp~h~~y~gAlGAaL 278 (279)
T TIGR00555 209 SLLGLIGNNIGQIAYLCALRYNIDRIVFIGSFLRNNQLLMKVLSYATNFW-----SKKALFLEHEGYSGAIGALL 278 (279)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCeEEEECCcccCCHHHHHHHHHHHhhc-----CceEEEECCcchHHHhhhcc
Confidence 455555555543321 113444788999999 778899999998877532 35666666667777777653
No 82
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=61.43 E-value=66 Score=27.59 Aligned_cols=78 Identities=19% Similarity=0.186 Sum_probs=44.5
Q ss_pred ceEeCCCCceeeecCccccccccccCCC----CCCCCCCCHHHHHHHHHhcCCHHHHHHh------hcCeEEecCCCCcc
Q psy2717 92 KSYELPDGQVITIGNERFRCPEALFQPS----FLGMESCGIHETVYNSIMKCDVDIRKDL------YANTVLSGGTTMYP 161 (229)
Q Consensus 92 ~~~~lpdg~~i~~~~~r~~~~E~lF~p~----~~~~~~~~l~~~I~~si~~~~~d~r~~l------~~nIiltGG~s~i~ 161 (229)
..-.||||..++. ..+|..+-.|. .+..+..+|.++|..-. .+.+.-+-| ..||+++||++
T Consensus 113 ~darLpdGsRvna----~~pPva~dGp~lsIRKf~k~~ltl~dli~~gt--~~~~~a~~L~~av~~r~NILisGGTG--- 183 (355)
T COG4962 113 VDARLPDGSRLNA----NSPPVAIDGPTLSIRKFPKIKLTLLDLIIFGT--MIRRAAKFLRRAVGIRCNILISGGTG--- 183 (355)
T ss_pred eeeeCCCCceEEe----ecCccccCCCcccccccccccccHHHHHHcCC--cCHHHHHHHHHHHhhceeEEEeCCCC---
Confidence 4456889876653 23344443333 33445556666665422 222322222 35899999998
Q ss_pred chHHHHHHHHHhhCCCC
Q psy2717 162 GIADRMQKEITALAPST 178 (229)
Q Consensus 162 Gl~~RL~~el~~~~~~~ 178 (229)
-.+.-|.+.|....|..
T Consensus 184 SGKTTlLNal~~~i~~~ 200 (355)
T COG4962 184 SGKTTLLNALSGFIDSD 200 (355)
T ss_pred CCHHHHHHHHHhcCCCc
Confidence 44666777887776653
No 83
>PRK09557 fructokinase; Reviewed
Probab=60.98 E-value=16 Score=30.23 Aligned_cols=50 Identities=14% Similarity=0.097 Sum_probs=30.5
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCC-CCCeEEEECCCCCccceehhhhHh
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAP-STIKIKIIAPPERKYSVWIGGSIL 200 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~-~~~~v~v~~~~~~~~~~w~Ggsil 200 (229)
|+|.||.+..+-|-+.|.+.+++... ...++++..+.-...+.-+||+.+
T Consensus 248 IvlgG~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~s~~~~~a~~~GAa~~ 298 (301)
T PRK09557 248 IVLGGGMSNVDRLYPTLPALLKQYVFGGECETPVRKALHGDSSGVRGAAWL 298 (301)
T ss_pred EEEcCcccchHHHHHHHHHHHHHHhcccccCCeEEEcccCCchhhhhhhHh
Confidence 67777777777787888888876543 212444544443345556677654
No 84
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=58.95 E-value=29 Score=24.01 Aligned_cols=57 Identities=21% Similarity=0.452 Sum_probs=35.3
Q ss_pred eEEecCCCCcc--chHHHHHHHHHhhCC-CCCeEEEECCCC-CccceehhhhHhhccccccccccc
Q psy2717 151 TVLSGGTTMYP--GIADRMQKEITALAP-STIKIKIIAPPE-RKYSVWIGGSILASLSTFQQMWIS 212 (229)
Q Consensus 151 IiltGG~s~i~--Gl~~RL~~el~~~~~-~~~~v~v~~~~~-~~~~~w~Ggsila~l~~~~~~~It 212 (229)
++.--|+-.+| ||..|.-+-|...-. ....++|...++ |+ |---++.-++|.++||.
T Consensus 18 vLFMKGtp~~P~CGFS~~~vqiL~~~g~v~~~~vnVL~d~eiR~-----~lk~~s~WPT~PQLyi~ 78 (105)
T COG0278 18 VLFMKGTPEFPQCGFSAQAVQILSACGVVDFAYVDVLQDPEIRQ-----GLKEYSNWPTFPQLYVN 78 (105)
T ss_pred EEEecCCCCCCCCCccHHHHHHHHHcCCcceeEEeeccCHHHHh-----ccHhhcCCCCCceeeEC
Confidence 55567877776 899999998887653 222466666543 11 22234444677777764
No 85
>PRK09698 D-allose kinase; Provisional
Probab=58.59 E-value=25 Score=29.04 Aligned_cols=51 Identities=20% Similarity=0.283 Sum_probs=31.4
Q ss_pred eEEecCCCCccc-hHHHHHHHHHhhCCC---CCeEEEECCCCCccceehhhhHhh
Q psy2717 151 TVLSGGTTMYPG-IADRMQKEITALAPS---TIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 151 IiltGG~s~i~G-l~~RL~~el~~~~~~---~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|+|.||.+..+. |.++|.++++..... ...+++..+.....++-+||+.++
T Consensus 240 IvlgG~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~a~~~GAa~~~ 294 (302)
T PRK09698 240 IILGGGVMDMPAFPRETLIAMIQKYLRKPLPYEVVRFIYASSSDFNGAQGAAILA 294 (302)
T ss_pred EEEcCccccCchhHHHHHHHHHHHHccCccccCCcEEEECCcCCcccHHhHHHHH
Confidence 667777666543 567888888775431 223445444444566678988765
No 86
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=57.95 E-value=18 Score=30.81 Aligned_cols=68 Identities=19% Similarity=0.173 Sum_probs=45.2
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceeecccHHHH------------HHHHHHHHHhcCCCCCc----------hhHHHH
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDL------------TDYLMKILTERGYSFTT----------TAEREI 62 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l------------~~~l~~ll~~~~~~~~~----------~~~~~~ 62 (229)
+=+|||+++|...-+.-|.+...++ +++||+.+ .+-.+.++.+.+.+... ...+++
T Consensus 148 ~NlDIGGGTtN~slFD~Gkv~dTaC--LdiGGRLik~drst~~v~Yi~~k~q~lI~~~g~~it~g~k~~~~~l~~v~~em 225 (473)
T COG4819 148 LNLDIGGGTTNYSLFDAGKVSDTAC--LDIGGRLIKTDRSTGRVVYIHKKGQMLIDECGGAITDGRKLTGAQLVQVTREM 225 (473)
T ss_pred EEEeccCCccceeeeccccccccee--eecCcEEEEeecccceEEEEccchHHHHHHcCCCcchhhccCHHHHHHHHHHH
Confidence 3479999999999999999998766 78999843 34456666666543321 113455
Q ss_pred HHHHHHhccccc
Q psy2717 63 VRDIKEKLCYVA 74 (229)
Q Consensus 63 ~~~iK~~~~~v~ 74 (229)
++-+++...+-+
T Consensus 226 aell~~~v~~ga 237 (473)
T COG4819 226 AELLVEVVDFGA 237 (473)
T ss_pred HHHHHHHhccCC
Confidence 666666655433
No 87
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=55.11 E-value=38 Score=22.55 Aligned_cols=46 Identities=7% Similarity=-0.185 Sum_probs=27.9
Q ss_pred eeEEecCCCeeEEEEe-eCCeeccccceeecccHHHHHHHHHHHHHh
Q psy2717 4 RKLSTVSLHNKYSNPY-GNGYALPHAILRLDLAGRDLTDYLMKILTE 49 (229)
Q Consensus 4 glVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~ 49 (229)
-+-+|+|...+.++-+ .+|.++........-+...+-+.+.+++.+
T Consensus 3 ilgiD~Ggt~i~~a~~d~~g~~~~~~~~~~~~~~~~~~~~l~~~i~~ 49 (99)
T smart00732 3 VLGLDPGRKGIGVAVVDETGKLADPLEVIPRTNKEADAARLKKLIKK 49 (99)
T ss_pred EEEEccCCCeEEEEEECCCCCEecCEEEEEecCcchHHHHHHHHHHH
Confidence 4789999999888887 567766543322222344445555555544
No 88
>PRK09585 anmK anhydro-N-acetylmuramic acid kinase; Reviewed
Probab=54.41 E-value=11 Score=32.52 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=20.7
Q ss_pred CeEEecCCCCccchHHHHHHHH
Q psy2717 150 NTVLSGGTTMYPGIADRMQKEI 171 (229)
Q Consensus 150 nIiltGG~s~i~Gl~~RL~~el 171 (229)
.|++|||++.=|-|.+||++++
T Consensus 289 ~vlv~GGGa~N~~Lm~~L~~~l 310 (365)
T PRK09585 289 ELLVCGGGARNPTLMERLAALL 310 (365)
T ss_pred EEEEECCCcchHHHHHHHHHhc
Confidence 5999999999999999999888
No 89
>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional
Probab=54.17 E-value=9.1 Score=32.73 Aligned_cols=50 Identities=18% Similarity=0.127 Sum_probs=34.1
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCC------CccceehhhhHhhc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE------RKYSVWIGGSILAS 202 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~------~~~~~w~Ggsila~ 202 (229)
.++++++||.+.=.-|.++|++...+. .++++.|+- ...-+|.|.-.+.+
T Consensus 264 ~~~lvv~GGVAaN~~LR~~l~~~~~~~-----~~~~~~p~~~~ctDNaaMIa~~g~~~~~~ 319 (345)
T PTZ00340 264 SNEVLIVGGVGCNLRLQEMMQQMAKER-----GGKLFAMDERYCIDNGAMIAYAGLLEYLS 319 (345)
T ss_pred CCeEEEcCCHHHHHHHHHHHHHHHHHc-----CCEEEeCChHhhhhhHHHHHHHHHHHHHc
Confidence 356999999999888888888766542 456666542 23347777665544
No 90
>PF09693 Phage_XkdX: Phage uncharacterised protein (Phage_XkdX); InterPro: IPR010022 This entry is represented by Bacteriophage 69, Orf86. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry identifies a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=50.73 E-value=8 Score=21.78 Aligned_cols=10 Identities=60% Similarity=1.275 Sum_probs=8.8
Q ss_pred cccHHHHhhc
Q psy2717 210 WISKQEYDES 219 (229)
Q Consensus 210 ~Itr~ey~e~ 219 (229)
|||++||+|-
T Consensus 26 ~IT~eey~eI 35 (40)
T PF09693_consen 26 WITKEEYKEI 35 (40)
T ss_pred eECHHHHHHh
Confidence 9999999883
No 91
>PRK15027 xylulokinase; Provisional
Probab=46.93 E-value=22 Score=31.83 Aligned_cols=48 Identities=13% Similarity=0.036 Sum_probs=32.2
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|+++||+++-+-+.+.+.+-+ ..+|....+...++-+|++++|..
T Consensus 387 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pv~~~~~~~~~~a~GaA~lA~~ 434 (484)
T PRK15027 387 PQSVTLIGGGARSEYWRQMLADIS--------GQQLDYRTGGDVGPALGAARLAQI 434 (484)
T ss_pred ccEEEEeCcccCCHHHHHHHHHHh--------CCeEEeecCCCcchHHHHHHHHHH
Confidence 356999999999888877666655 344433332233567899998853
No 92
>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=46.70 E-value=17 Score=30.87 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=34.4
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCC------CccceehhhhHhhc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE------RKYSVWIGGSILAS 202 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~------~~~~~w~Ggsila~ 202 (229)
.+.++++||.+.=..|.++|++.... ..++++.||. ...-+|.|...+.+
T Consensus 262 ~~~lvi~GGVaaN~~LR~~l~~~~~~-----~g~~~~~p~~~lCtDNaaMIA~ag~~~~~~ 317 (342)
T COG0533 262 KKELVIAGGVAANSRLREMLEEMCKE-----RGAEVYIPPLELCTDNAAMIAYAGLLRYKA 317 (342)
T ss_pred CCEEEEeccHHHhHHHHHHHHHHHHh-----cCCEEEcCChHhccchHHHHHHHHHHHHHc
Confidence 45699999999888888888776641 2456766553 23447777777765
No 93
>TIGR01669 phage_XkdX phage uncharacterized protein, XkdX family. This model represents a family of small (about 50 amino acid) phage proteins, found in at least 12 different phage and prophage regions of Gram-positive bacteria. In a number of these phage, the gene for this protein is found near the holin and endolysin genes.
Probab=46.44 E-value=10 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.477 Sum_probs=10.9
Q ss_pred cccc-ccccHHHHhhc
Q psy2717 205 TFQQ-MWISKQEYDES 219 (229)
Q Consensus 205 ~~~~-~~Itr~ey~e~ 219 (229)
.|-. -|||.+||+|-
T Consensus 25 ~~V~~~~IT~eey~eI 40 (45)
T TIGR01669 25 KFVEKKLITREQYKVI 40 (45)
T ss_pred HHhhcCccCHHHHHHH
Confidence 3434 49999999883
No 94
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=46.21 E-value=34 Score=30.38 Aligned_cols=47 Identities=19% Similarity=0.243 Sum_probs=32.5
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|+++||.|+-+-+.+.+.+-+ ..+|..+.. .-++-+|++++|..
T Consensus 391 ~~~i~~~GG~s~s~~~~Q~~Adv~--------g~pv~~~~~-~e~~a~GaA~~a~~ 437 (481)
T TIGR01312 391 IQSIRLIGGGAKSPAWRQMLADIF--------GTPVDVPEG-EEGPALGAAILAAW 437 (481)
T ss_pred cceEEEeccccCCHHHHHHHHHHh--------CCceeecCC-CcchHHHHHHHHHH
Confidence 356999999999988877776666 233433332 23667899998854
No 95
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=46.20 E-value=19 Score=33.84 Aligned_cols=22 Identities=5% Similarity=-0.200 Sum_probs=19.5
Q ss_pred eeEEecCCCeeEEEEeeCCeec
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYAL 25 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~ 25 (229)
.+++|||+.+|++.-+.+|.+.
T Consensus 280 ~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 280 AIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred EEEEEcCCcceeeeeeecCcEE
Confidence 7899999999999999987654
No 96
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=45.83 E-value=41 Score=29.45 Aligned_cols=45 Identities=7% Similarity=-0.014 Sum_probs=32.0
Q ss_pred EecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHhcC
Q psy2717 7 STVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERG 51 (229)
Q Consensus 7 VDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~~~ 51 (229)
||+|..+|-++-+-++.++...+.+...--....+.+.++|.+.+
T Consensus 149 IDiGSTttK~Vl~dd~~Ii~~~~~~t~~~~~~a~~~l~~~l~~~G 193 (404)
T TIGR03286 149 IDSGSTTTKAVVMEDNEVIGTGWVPTTKVIESAEEAVERALEEAG 193 (404)
T ss_pred EEcChhheeeEEEcCCeEEEEEEeecccHHHHHHHHHHHHHHHcC
Confidence 799999999999988877766555433224556666667776655
No 97
>PRK14878 UGMP family protein; Provisional
Probab=45.60 E-value=26 Score=29.60 Aligned_cols=34 Identities=15% Similarity=0.268 Sum_probs=26.8
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP 187 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~ 187 (229)
.+|+++||.+.=.-+.++|.+.++.. .++++.++
T Consensus 243 ~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 276 (323)
T PRK14878 243 KEVLLVGGVAANRRLREKLEIMAEDR-----GAKFYVVP 276 (323)
T ss_pred CeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 47999999999999999999888653 34666655
No 98
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=45.06 E-value=12 Score=33.23 Aligned_cols=21 Identities=10% Similarity=-0.070 Sum_probs=19.4
Q ss_pred eEEecCCCeeEEEEeeCCeec
Q psy2717 5 KLSTVSLHNKYSNPYGNGYAL 25 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~ 25 (229)
++||||+.+|+|--+.+|.+-
T Consensus 252 l~VDIGGATTDvhSv~~g~~~ 272 (463)
T TIGR01319 252 ILIDIGGATTDVHSAAAGELS 272 (463)
T ss_pred EEEEcCccccchhhccCCCcc
Confidence 899999999999999999665
No 99
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=44.88 E-value=66 Score=26.27 Aligned_cols=23 Identities=4% Similarity=-0.018 Sum_probs=21.1
Q ss_pred ceeEEecCCCeeEEEEeeCCeec
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYAL 25 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~ 25 (229)
..+|||||-+.|-.+-|.+|++.
T Consensus 168 ~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 168 GIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred CeEEEEeCCccEEEEEEeCCEEE
Confidence 46899999999999999999887
No 100
>PF13941 MutL: MutL protein
Probab=44.66 E-value=11 Score=33.52 Aligned_cols=26 Identities=8% Similarity=-0.042 Sum_probs=21.7
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccc
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAI 29 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~ 29 (229)
=+|||||+.+|+|--|.+|.+-...+
T Consensus 250 llvVDIGGATTDVhSv~~~~~~~~~~ 275 (457)
T PF13941_consen 250 LLVVDIGGATTDVHSVAEGSPEIPGI 275 (457)
T ss_pred EEEEEccCcccchhhhccCCcccccc
Confidence 37999999999999999877765554
No 101
>KOG2708|consensus
Probab=44.14 E-value=61 Score=26.20 Aligned_cols=56 Identities=23% Similarity=0.414 Sum_probs=32.6
Q ss_pred CHHHHHHHHHhcCCHHHHHHh---hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCC
Q psy2717 127 GIHETVYNSIMKCDVDIRKDL---YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPER 189 (229)
Q Consensus 127 ~l~~~I~~si~~~~~d~r~~l---~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~ 189 (229)
+|++.++..+-.. ..|... .+.++++||. |-.+||++-+..+.... .-++++.++|
T Consensus 233 SLQEtvFamLVEi--TERAMAh~~s~evLIVGGV----GCN~RLQeMM~~Mc~eR-gg~~faTDeR 291 (336)
T KOG2708|consen 233 SLQETVFAMLVEI--TERAMAHCGSKEVLIVGGV----GCNERLQEMMAIMCSER-GGKLFATDER 291 (336)
T ss_pred HHHHHHHHHHHHH--HHHHHhhcCCCcEEEEecc----cccHHHHHHHHHHHHhc-CCceEecccc
Confidence 5666655544322 222211 2349999997 67899988777666543 2355555554
No 102
>PRK00976 hypothetical protein; Provisional
Probab=43.82 E-value=34 Score=29.02 Aligned_cols=43 Identities=26% Similarity=0.323 Sum_probs=27.7
Q ss_pred CeEEecCCCCcc--chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 150 NTVLSGGTTMYP--GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 150 nIiltGG~s~i~--Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
.|+|.||.|..+ .|.+++++.+.. . ...-...++-+||+.+|.
T Consensus 266 ~IVLGGGVS~~~e~~L~~~I~e~l~~------~----~a~LG~dAGaiGAA~iA~ 310 (326)
T PRK00976 266 NVVLAGSVGEMDEPDVSERIKELLDK------K----VLVLGKESAAIGLALIAR 310 (326)
T ss_pred EEEEcCccccCchhHHHHHHHHHhcc------c----ccccCCchHHHHHHHHHH
Confidence 599999999988 556666655522 1 112224677788888773
No 103
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=42.67 E-value=42 Score=27.92 Aligned_cols=51 Identities=24% Similarity=0.175 Sum_probs=30.9
Q ss_pred eEEecCCCC-ccchHHHHHHHHHhhCCC--CCeEEEECCCCCccceehhhhHhh
Q psy2717 151 TVLSGGTTM-YPGIADRMQKEITALAPS--TIKIKIIAPPERKYSVWIGGSILA 201 (229)
Q Consensus 151 IiltGG~s~-i~Gl~~RL~~el~~~~~~--~~~v~v~~~~~~~~~~w~Ggsila 201 (229)
|+|.|+.+. .+-|.+++.+.++..... ...+++..+.....++-+||+.++
T Consensus 255 IvlgG~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~Gaa~~~ 308 (318)
T TIGR00744 255 IVLGGGLSDAGDLLLDPIRKSYKRWLFGGARQVADIIAAQLGNDAGLVGAADLA 308 (318)
T ss_pred EEECChhhhCcHHHHHHHHHHHHHHhhhcccCCcEEEEcccCCchhhHHHHHHH
Confidence 677666554 356888888888764321 123444444444556677887765
No 104
>PF03727 Hexokinase_2: Hexokinase; InterPro: IPR022673 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF00349 from PFAM. Some members of the family have two copies of each of these domains. This entry represents the more C-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4DHY_A 3ID8_A 4DCH_A 3FGU_A 3QIC_A 3A0I_X 3VEY_A 3IDH_A 3VEV_A 3VF6_A ....
Probab=41.55 E-value=34 Score=27.57 Aligned_cols=42 Identities=24% Similarity=0.496 Sum_probs=31.8
Q ss_pred CccchHHHHHHHHHhhCCC-CCeEEEECCCCCccceehhhhHhhcc
Q psy2717 159 MYPGIADRMQKEITALAPS-TIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 159 ~i~Gl~~RL~~el~~~~~~-~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
..|+|.+++++-|+.+.+. ..+|.+.... .++=+||+|+|.+
T Consensus 198 ~~p~f~~~l~~~l~~L~~~~~~~v~~~~~~---dgsg~GAAi~AA~ 240 (243)
T PF03727_consen 198 KYPNFRERLQEALDELLPEEGCKVEFVLSE---DGSGVGAAIAAAV 240 (243)
T ss_dssp HSTTHHHHHHHHHHHHSTT-CEEEEEEE-S---STHHHHHHHHHHH
T ss_pred eCHHHHHHHHHHHHHhcccccceEEEEEec---CchHHHHHHHHHH
Confidence 4899999999999999987 3356665444 3577899998754
No 105
>TIGR03722 arch_KAE1 universal archaeal protein Kae1. This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.
Probab=40.08 E-value=27 Score=29.47 Aligned_cols=34 Identities=18% Similarity=0.317 Sum_probs=25.8
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP 187 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~ 187 (229)
.+|+|+||.++=.-+.++|.+.+... .++++.++
T Consensus 244 ~~lvlsGGVa~N~~L~~~l~~~l~~~-----g~~v~~~~ 277 (322)
T TIGR03722 244 KEVLLVGGVAANRRLREMLELMAEDR-----GAKFYVPP 277 (322)
T ss_pred CeEEEeccHHHHHHHHHHHHHHHHHC-----CCEEEcCC
Confidence 47999999999888999998877542 34666544
No 106
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=38.84 E-value=75 Score=26.57 Aligned_cols=45 Identities=11% Similarity=0.002 Sum_probs=32.1
Q ss_pred EEecCCCeeEEEEeeCCeeccccceeecccHH---HHHHHHHHHHHhcCC
Q psy2717 6 LSTVSLHNKYSNPYGNGYALPHAILRLDLAGR---DLTDYLMKILTERGY 52 (229)
Q Consensus 6 VVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~---~l~~~l~~ll~~~~~ 52 (229)
=||||..+|-++.+-++.++.. ...+-|++ ...+.|.+++.+.+.
T Consensus 36 GIDiGStt~K~Vlld~~~i~~~--~~~~tg~~~~~~a~~~l~~~l~~~g~ 83 (293)
T TIGR03192 36 GIDVGSVSSQAVLVCDGELYGY--NSMRTGNNSPDSAKNALQGIMDKIGM 83 (293)
T ss_pred EEEeCchhEEEEEEeCCEEEEE--EeecCCCCHHHHHHHHHHHHHHHcCC
Confidence 3899999999999988765543 33466654 566777777776653
No 107
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=38.36 E-value=51 Score=29.67 Aligned_cols=46 Identities=17% Similarity=0.249 Sum_probs=31.3
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
.+.|+++||.|+-+-+.+.+.+-+ ...|..+..+. ++-+|++++|.
T Consensus 407 ~~~i~~~GG~a~s~~w~Qi~Adv~--------g~pV~~~~~~e-~~alGaAl~aa 452 (504)
T PTZ00294 407 LNSLRVDGGLTKNKLLMQFQADIL--------GKDIVVPEMAE-TTALGAALLAG 452 (504)
T ss_pred cceEEEecccccCHHHHHHHHHHh--------CCceEecCccc-chHHHHHHHHH
Confidence 356999999999888777666555 33444333323 56789999885
No 108
>TIGR00103 DNA_YbaB_EbfC DNA-binding protein, YbaB/EbfC family. The function of this protein is unknown, but it has been expressed and crystallized. Its gene nearly always occurs next to recR and/or dnaX. It is restricted to Bacteria and the plant Arabidopsis. The plant form contains an additional N-terminal region that may serve as a transit peptide and shows a close relationship to the cyanobacterial member, suggesting that it is a chloroplast protein. Members of this family are found in a single copy per bacterial genome, but are broadly distributed. A member is present even in the minimal gene complement of Mycoplasm genitalium.
Probab=38.28 E-value=6.6 Score=27.20 Aligned_cols=49 Identities=14% Similarity=0.410 Sum_probs=26.4
Q ss_pred ccccCCCCCCCCCCCHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccch
Q psy2717 113 EALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 163 (229)
Q Consensus 113 E~lF~p~~~~~~~~~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl 163 (229)
++=++|.++..+..-|.++|..+++..-...... .+. .++||....|||
T Consensus 54 ~v~Id~~~l~~d~e~LedlI~~A~N~A~~k~~~~-~~e-~~t~gl~~~pGl 102 (102)
T TIGR00103 54 SIEIDPSLLEEDKEALEDMITEALNDAVKKVEET-YKE-LMTSGMPLPPGL 102 (102)
T ss_pred EEEECHHHHhCCHHHHHHHHHHHHHHHHHHHHHH-HHH-HHhCCCCCCCCC
Confidence 3334444443334567777777776543222222 222 778887755886
No 109
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=37.04 E-value=40 Score=26.91 Aligned_cols=29 Identities=7% Similarity=-0.041 Sum_probs=22.7
Q ss_pred eEEecCCCeeEEEEe-eCCeeccccceeec
Q psy2717 5 KLSTVSLHNKYSNPY-GNGYALPHAILRLD 33 (229)
Q Consensus 5 lVVDiG~~~t~v~pV-~~G~~~~~~~~~~~ 33 (229)
|.||+|.+++.++.+ .+|.++.......+
T Consensus 3 lgiDiGTts~K~~l~d~~g~iv~~~~~~~~ 32 (245)
T PF00370_consen 3 LGIDIGTTSVKAVLFDEDGKIVASASRPYP 32 (245)
T ss_dssp EEEEECSSEEEEEEEETTSCEEEEEEEEET
T ss_pred EEEEEcccceEEEEEeCCCCEEEEEEEeee
Confidence 789999999999988 47777766554443
No 110
>PRK13318 pantothenate kinase; Reviewed
Probab=35.71 E-value=1.3e+02 Score=24.36 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=31.9
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceee--cccHHHHHHHHHHHHHhcC
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRL--DLAGRDLTDYLMKILTERG 51 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~--~~GG~~l~~~l~~ll~~~~ 51 (229)
+.||||.+.+.+.-+-+|..+.+..... .-+.+++-..+.+++...+
T Consensus 3 L~IDIGnT~iK~al~d~g~i~~~~~~~t~~~~~~~~~~~~l~~l~~~~~ 51 (258)
T PRK13318 3 LAIDVGNTNTVFGLYEGGKLVAHWRISTDSRRTADEYGVWLKQLLGLSG 51 (258)
T ss_pred EEEEECCCcEEEEEEECCEEEEEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999998888887765432222 1245666667777776543
No 111
>PRK13321 pantothenate kinase; Reviewed
Probab=34.66 E-value=1.5e+02 Score=24.06 Aligned_cols=47 Identities=17% Similarity=0.130 Sum_probs=31.7
Q ss_pred eEEecCCCeeEEEEeeCCeeccccceee--cccHHHHHHHHHHHHHhcC
Q psy2717 5 KLSTVSLHNKYSNPYGNGYALPHAILRL--DLAGRDLTDYLMKILTERG 51 (229)
Q Consensus 5 lVVDiG~~~t~v~pV~~G~~~~~~~~~~--~~GG~~l~~~l~~ll~~~~ 51 (229)
+.||||.+.+.+.-+-++.++....... .-+.+.+-..+.+++.+.+
T Consensus 3 L~IDIGnT~ik~gl~~~~~i~~~~~~~T~~~~~~~~~~~~l~~l~~~~~ 51 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGDRLLRSFRLPTDKSRTSDELGILLLSLFRHAG 51 (256)
T ss_pred EEEEECCCeEEEEEEECCEEEEEEEEecCCCCCHHHHHHHHHHHHHHcC
Confidence 6899999999997776665554322111 2356777788888887653
No 112
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=34.55 E-value=80 Score=28.69 Aligned_cols=46 Identities=15% Similarity=0.198 Sum_probs=29.5
Q ss_pred cCeEEecCC-CCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 149 ANTVLSGGT-TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 149 ~nIiltGG~-s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+|+++||. |+=+-+.+-+.+-+ ..+|..+..+ -++-+|++++|..
T Consensus 437 ~~i~~~GGg~a~s~~w~Qi~Adv~--------g~pV~~~~~~-e~~a~GaA~lA~~ 483 (536)
T TIGR01234 437 EELMAAGGIARKNPVIMQIYADVT--------NRPLQIVASD-QAPALGAAIFAAV 483 (536)
T ss_pred ceEEEeCCccccCHHHHHHHHHhh--------CCeeEeccCC-cchhHHHHHHHHH
Confidence 569999999 88877777544444 3344333322 2556788888754
No 113
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=34.54 E-value=68 Score=28.75 Aligned_cols=47 Identities=15% Similarity=0.201 Sum_probs=31.9
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|.++||.|+-+-+.+-+.+-+ ...|..+..+ -++-+|++++|..
T Consensus 400 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pv~~~~~~-e~~alGaA~~a~~ 446 (493)
T TIGR01311 400 ITKLRVDGGMTNNNLLMQFQADIL--------GVPVVRPKVT-ETTALGAAYAAGL 446 (493)
T ss_pred CceEEEecccccCHHHHHHHHHhc--------CCeeEecCCC-cchHHHHHHHHHh
Confidence 356999999998888887777665 3344433333 3456898888753
No 114
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=34.43 E-value=42 Score=17.64 Aligned_cols=22 Identities=32% Similarity=0.593 Sum_probs=15.7
Q ss_pred eEEecCCCCccchHHHHHHHHHhh
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITAL 174 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~ 174 (229)
-|=|||.| |-|..+|.+||...
T Consensus 8 ~ISTnG~s--P~la~~iR~~ie~~ 29 (30)
T PF14824_consen 8 AISTNGKS--PRLARLIRKEIERL 29 (30)
T ss_dssp EEEESSS---HHHHHHHHHHHHHH
T ss_pred EEECCCCC--hHHHHHHHHHHHHh
Confidence 34577777 88999999888653
No 115
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.38 E-value=85 Score=25.97 Aligned_cols=23 Identities=0% Similarity=-0.139 Sum_probs=20.3
Q ss_pred ceeEEecCCCeeEEEEeeCCeec
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYAL 25 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~ 25 (229)
-++|||+|-+.|...-|.++++.
T Consensus 228 palvVd~GngHttaalvdedRI~ 250 (342)
T COG4012 228 PALVVDYGNGHTTAALVDEDRIV 250 (342)
T ss_pred ceEEEEccCCceEEEEecCCeEE
Confidence 47999999999999999888765
No 116
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=33.85 E-value=29 Score=27.61 Aligned_cols=20 Identities=25% Similarity=0.493 Sum_probs=14.2
Q ss_pred cC-eEEecCCCCc-cchHHHHH
Q psy2717 149 AN-TVLSGGTTMY-PGIADRMQ 168 (229)
Q Consensus 149 ~n-IiltGG~s~i-~Gl~~RL~ 168 (229)
.| |++|||+|-| -+|.+|+.
T Consensus 5 gnTiLITGG~sGIGl~lak~f~ 26 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFL 26 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHH
Confidence 44 9999999976 34555554
No 117
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=33.34 E-value=49 Score=32.44 Aligned_cols=65 Identities=12% Similarity=0.283 Sum_probs=36.5
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCCCCC----eEEE--E-------CCCCCccceehhhhHhhc-cc-ccccccccHHH
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAPSTI----KIKI--I-------APPERKYSVWIGGSILAS-LS-TFQQMWISKQE 215 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~~~~----~v~v--~-------~~~~~~~~~w~Ggsila~-l~-~~~~~~Itr~e 215 (229)
++|||--|.+||+..-+.+-+ .+-|.-. ..++ . .-.||+..+-+||.+..- .+ ...++++.-.+
T Consensus 770 LLLTGRPSrlPgvqalfr~~~-pvPp~RIv~l~~Y~tg~WYPF~~~~rI~dPKTTaaVGAmLc~La~~lrL~nF~f~~~~ 848 (1002)
T PF07520_consen 770 LLLTGRPSRLPGVQALFRHLL-PVPPDRIVPLHGYRTGNWYPFNDQGRIDDPKTTAAVGAMLCLLAEGLRLPNFYFRTGD 848 (1002)
T ss_pred EEEcCCccccHHHHHHHHHhC-CCCcccEEecCCeeecccccCCCCCcCCCchHHHHHHHHHHHHhccCCCCCceEEhhh
Confidence 899999999999988665433 2222100 1111 0 113677788888776431 12 34555555444
Q ss_pred H
Q psy2717 216 Y 216 (229)
Q Consensus 216 y 216 (229)
+
T Consensus 849 l 849 (1002)
T PF07520_consen 849 L 849 (1002)
T ss_pred c
Confidence 4
No 118
>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family. This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.
Probab=33.27 E-value=41 Score=28.15 Aligned_cols=34 Identities=21% Similarity=0.422 Sum_probs=25.9
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP 187 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~ 187 (229)
.+|+++||.+.=.-+.++|.+.+... .++++.++
T Consensus 260 ~~vvlsGGVa~N~~L~~~l~~~~~~~-----g~~v~~~~ 293 (305)
T TIGR00329 260 KELVLVGGVSANKRLREMLETLCQEL-----NVEFYYPP 293 (305)
T ss_pred CEEEEECCHHHHHHHHHHHHHHHHHC-----CCEEECCC
Confidence 47999999998888888888877542 45666554
No 119
>PRK10331 L-fuculokinase; Provisional
Probab=33.01 E-value=69 Score=28.49 Aligned_cols=47 Identities=13% Similarity=0.118 Sum_probs=31.5
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|.++||+++-+-+.+.+.+-+ ...|..+..+ .++-+|++++|..
T Consensus 390 ~~~i~~~GGga~s~~w~Qi~Advl--------g~pV~~~~~~-e~~a~GaA~la~~ 436 (470)
T PRK10331 390 ASELLLVGGGSRNALWNQIKANML--------DIPIKVLDDA-ETTVAGAAMFGWY 436 (470)
T ss_pred CceEEEEcccccCHHHHHHHHHhc--------CCeeEecCcc-cchHHHHHHHHHH
Confidence 456999999998877766665555 3344333332 3567899998854
No 120
>PRK04123 ribulokinase; Provisional
Probab=32.10 E-value=90 Score=28.40 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=29.1
Q ss_pred cCeEEecCC-CCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 149 ANTVLSGGT-TMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 149 ~nIiltGG~-s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
+.|+++||+ |+-+-+.+-+.+-+ ...|..+..+ -++-+|++++|..
T Consensus 440 ~~i~~~GGg~s~s~~w~Qi~ADv~--------g~pV~~~~~~-e~~alGaA~lA~~ 486 (548)
T PRK04123 440 EEVIAAGGIARKNPVLMQIYADVL--------NRPIQVVASD-QCPALGAAIFAAV 486 (548)
T ss_pred ceEEEeCCCcccCHHHHHHHHHhc--------CCceEecCcc-ccchHHHHHHHHH
Confidence 569999999 88776666554444 3344333222 2456799988854
No 121
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=31.48 E-value=72 Score=27.31 Aligned_cols=48 Identities=19% Similarity=0.364 Sum_probs=35.6
Q ss_pred eEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCC---CCccceehhhhHhhc
Q psy2717 151 TVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP---ERKYSVWIGGSILAS 202 (229)
Q Consensus 151 IiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~---~~~~~~w~Ggsila~ 202 (229)
|+|+|-.+.+|-|.+.+...|....+ +++.... -..-.+-.|++++|+
T Consensus 264 IilSGr~~~~~~~~~~l~~~l~~~~~----~~v~~l~~~~~~aKeaA~GaAiIA~ 314 (343)
T PF07318_consen 264 IILSGRFSRIPEFRKKLEDRLEDYFP----VKVRKLEGLARKAKEAAQGAAIIAN 314 (343)
T ss_pred EEEeccccccHHHHHHHHHHHHhhcc----cceeecccccccchhhhhhHHHHhh
Confidence 99999999999999999999988776 2332211 112346789999886
No 122
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=30.94 E-value=56 Score=27.95 Aligned_cols=46 Identities=9% Similarity=-0.091 Sum_probs=31.7
Q ss_pred ceeEEecCCCeeEEEEeeCCeeccccceee-ccc---HHHHHHHHHHHHH
Q psy2717 3 TRKLSTVSLHNKYSNPYGNGYALPHAILRL-DLA---GRDLTDYLMKILT 48 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV~~G~~~~~~~~~~-~~G---G~~l~~~l~~ll~ 48 (229)
+=++||+|++.|.++.|.+|.++..---++ ..| .-.++-.+..++.
T Consensus 155 nfIlvEiG~~yta~iaV~~GkIVDGiggt~g~pG~~~~G~lD~Evay~i~ 204 (343)
T PF07318_consen 155 NFILVEIGSGYTAAIAVKNGKIVDGIGGTIGFPGYLSHGALDGEVAYLIG 204 (343)
T ss_pred eEEEEEccCCceEEEEEECCeEEccccccccCCccccCCcccHHHHHHhc
Confidence 457999999999999999999996533333 122 2235666666655
No 123
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.35 E-value=1.3e+02 Score=24.99 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=23.6
Q ss_pred eeEEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHH
Q psy2717 4 RKLSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKIL 47 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll 47 (229)
-+++|+|.++++|+. |||.+-.+-..-.|---+.+.+.++..+
T Consensus 3 ila~DvG~GTqDi~~-~d~~~EnSl~mVmPspt~~~A~R~R~~~ 45 (342)
T COG4012 3 ILAIDVGVGTQDIVA-YDGDPENSLRMVMPSPTSTLAQRLRFML 45 (342)
T ss_pred eEEEEecCCceeEEE-ecCCcccceeEeecCchHHHHHHHHHHh
Confidence 378999999999875 4554332222222333334444444444
No 124
>PRK00047 glpK glycerol kinase; Provisional
Probab=29.18 E-value=97 Score=27.81 Aligned_cols=47 Identities=15% Similarity=0.207 Sum_probs=31.6
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
...|.++||.|+-+-+.+-+.+-+ ..+|.....+. ++-+|++++|..
T Consensus 404 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~a~GaA~~A~~ 450 (498)
T PRK00047 404 LKELRVDGGAVANNFLMQFQADIL--------GVPVERPVVAE-TTALGAAYLAGL 450 (498)
T ss_pred CceEEEecCcccCHHHHHHHHHhh--------CCeeEecCccc-chHHHHHHHHhh
Confidence 456999999998887777666555 44444433322 556899998854
No 125
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=29.14 E-value=36 Score=24.91 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=19.9
Q ss_pred CHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHHHHHhh
Q psy2717 127 GIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITAL 174 (229)
Q Consensus 127 ~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~ 174 (229)
.|.+++.+.+.+++ =|+.|||++.-+ .+...+-+..+
T Consensus 55 ~i~~~l~~~~~~~D---------liIttGG~g~g~--~D~t~~ai~~~ 91 (144)
T TIGR00177 55 EIREILRKAVDEAD---------VVLTTGGTGVGP--RDVTPEALEEL 91 (144)
T ss_pred HHHHHHHHHHhCCC---------EEEECCCCCCCC--CccHHHHHHHh
Confidence 45555555444332 278888877533 44445555443
No 126
>PLN02295 glycerol kinase
Probab=28.98 E-value=77 Score=28.60 Aligned_cols=47 Identities=15% Similarity=0.171 Sum_probs=31.1
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
...|.++||+|+-+-+.+.+.+-+ ..+|..+..+ -.+-+|++++|..
T Consensus 413 ~~~i~~~GGga~s~~w~Qi~ADv~--------g~pV~~~~~~-e~~alGaA~~A~~ 459 (512)
T PLN02295 413 LFLLRVDGGATANNLLMQIQADLL--------GSPVVRPADI-ETTALGAAYAAGL 459 (512)
T ss_pred cceEEEeccchhCHHHHHHHHHhc--------CCceEecCcc-ccHHHHHHHHHHh
Confidence 345889999998888777666555 4445443332 3456798888753
No 127
>KOG2960|consensus
Probab=28.81 E-value=37 Score=27.19 Aligned_cols=79 Identities=20% Similarity=0.463 Sum_probs=43.4
Q ss_pred HHHHHhhcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEEC-CCCCccceehhhhHhhccccc--ccccccH--HHH
Q psy2717 142 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIA-PPERKYSVWIGGSILASLSTF--QQMWISK--QEY 216 (229)
Q Consensus 142 d~r~~l~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~-~~~~~~~~w~Ggsila~l~~~--~~~~Itr--~ey 216 (229)
|+-+-.-+.|+++|.+| .||... .++....|. .++.++. +..|.-.+|+||.+++.+--- .++++.. --|
T Consensus 70 DldkyAesDvviVGAGS--aGLsAA--Y~I~~~rPd-lkvaIIE~SVaPGGGaWLGGQLFSAMvvRKPAhLFL~EigvpY 144 (328)
T KOG2960|consen 70 DLDKYAESDVVIVGAGS--AGLSAA--YVIAKNRPD-LKVAIIESSVAPGGGAWLGGQLFSAMVVRKPAHLFLQEIGVPY 144 (328)
T ss_pred HHHhhhccceEEECCCc--ccccee--eeeeccCCC-ceEEEEEeeecCCCcccccchhhhhhhhcChHHHHHHHhCCCc
Confidence 44444456699999665 244321 233333332 3555543 345678899999999986321 1233211 137
Q ss_pred hhcCccchh
Q psy2717 217 DESGPGIVH 225 (229)
Q Consensus 217 ~e~G~~~~~ 225 (229)
++.|..++-
T Consensus 145 edegdYVVV 153 (328)
T KOG2960|consen 145 EDEGDYVVV 153 (328)
T ss_pred ccCCCEEEE
Confidence 777765543
No 128
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=28.77 E-value=86 Score=27.85 Aligned_cols=48 Identities=10% Similarity=0.118 Sum_probs=31.1
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhccc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASLS 204 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l~ 204 (229)
.+.|.++||+|+=+-+.+-+.+-+ ..+|..+..+ -++-+|++++|...
T Consensus 394 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pV~~~~~~-e~~~lGaA~~a~~a 441 (465)
T TIGR02628 394 ASELLLVGGGSKNTLWNQIRANML--------DIPVKVVDDA-ETTVAGAAMFGFYG 441 (465)
T ss_pred cceEEEecCccCCHHHHHHhhhhc--------CCeeEeccCC-cchHHHHHHHHHHh
Confidence 456999999998777766554444 3444433333 34568999998653
No 129
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=28.10 E-value=1e+02 Score=27.69 Aligned_cols=47 Identities=19% Similarity=0.181 Sum_probs=30.6
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
...|.++||.|+=+-+.+.+.+-+ ...|..+..+ -++-+|++++|..
T Consensus 402 ~~~i~~~GGga~s~~w~Qi~Adv~--------g~pv~~~~~~-e~~a~GaA~la~~ 448 (505)
T TIGR01314 402 LNMIQATGGFASSEVWRQMMSDIF--------EQEIVVPESY-ESSCLGACILGLK 448 (505)
T ss_pred CcEEEEecCcccCHHHHHHHHHHc--------CCeeEecCCC-CcchHHHHHHHHH
Confidence 456999999998776666665555 3344333332 3667899998753
No 130
>PRK14623 hypothetical protein; Provisional
Probab=27.19 E-value=50 Score=23.09 Aligned_cols=47 Identities=11% Similarity=0.195 Sum_probs=25.0
Q ss_pred cCCCCCCCCCCCHHHHHHHHHh----cCCHHHHHHhhcCeEEe-cCCCCccchHHH
Q psy2717 116 FQPSFLGMESCGIHETVYNSIM----KCDVDIRKDLYANTVLS-GGTTMYPGIADR 166 (229)
Q Consensus 116 F~p~~~~~~~~~l~~~I~~si~----~~~~d~r~~l~~nIilt-GG~s~i~Gl~~R 166 (229)
.+|+++. |..-|.++|..+++ ++... ..+-++. ++ ||...+|||...
T Consensus 53 Idp~~l~-D~E~LeDLI~aAvn~A~~k~~~~-~~~~m~~--~t~~g~~~~PG~~~~ 104 (106)
T PRK14623 53 IDDELLE-DKEQLEDYLVLTLNKAIEKATEI-NEAELGA--VAKEGMPDIPGMDNM 104 (106)
T ss_pred ECHHHcC-CHHHHHHHHHHHHHHHHHHHHHH-HHHHHHH--HHhcCCCCCCCchhh
Confidence 3444332 33456666665554 44333 3333443 56 477668999764
No 131
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=26.93 E-value=1.4e+02 Score=24.73 Aligned_cols=25 Identities=8% Similarity=-0.173 Sum_probs=19.7
Q ss_pred eEEecCCCeeEEEEe-eCCeeccccc
Q psy2717 5 KLSTVSLHNKYSNPY-GNGYALPHAI 29 (229)
Q Consensus 5 lVVDiG~~~t~v~pV-~~G~~~~~~~ 29 (229)
+.||+|.+.+.++-+ .+|.++....
T Consensus 1 lgidig~t~~~~~l~d~~g~i~~~~~ 26 (318)
T TIGR00744 1 IGVDIGGTTIKLGVVDEEGNILSKWK 26 (318)
T ss_pred CEEEeCCCEEEEEEECCCCCEEEEEE
Confidence 468999999999988 4788775533
No 132
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=26.51 E-value=84 Score=28.62 Aligned_cols=47 Identities=17% Similarity=0.340 Sum_probs=31.2
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|.++||.|+-+-+.+-+.+=+ ..+|..+..+. ++-+|++++|..
T Consensus 444 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~e-~~alGaA~lA~~ 490 (541)
T TIGR01315 444 IKSIFMSGGQCQNPLLMQLIADAC--------DMPVLIPYVNE-AVLHGAAMLGAK 490 (541)
T ss_pred ccEEEEecCcccCHHHHHHHHHHH--------CCeeEecChhH-HHHHHHHHHHHH
Confidence 356999999998877766555444 34444444333 456899998853
No 133
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=26.18 E-value=1.3e+02 Score=24.42 Aligned_cols=21 Identities=14% Similarity=-0.058 Sum_probs=16.4
Q ss_pred EecCCCeeEEEEee-CCeeccc
Q psy2717 7 STVSLHNKYSNPYG-NGYALPH 27 (229)
Q Consensus 7 VDiG~~~t~v~pV~-~G~~~~~ 27 (229)
||.|+++|.++.+- +|.++..
T Consensus 3 IDgGgTkt~~vl~d~~g~il~~ 24 (271)
T PF01869_consen 3 IDGGGTKTKAVLVDENGNILGR 24 (271)
T ss_dssp EEECSSEEEEEEEETTSEEEEE
T ss_pred EeeChheeeeEEEeCCCCEEEE
Confidence 89999999999884 4565543
No 134
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=26.10 E-value=66 Score=29.08 Aligned_cols=47 Identities=15% Similarity=0.181 Sum_probs=30.6
Q ss_pred hcCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 148 YANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 148 ~~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
.+.|+++||+|+-+-+.+.+.+-+ ..+|..+..+ .++-+|++++|..
T Consensus 410 ~~~i~~~GGga~s~~w~Qi~ADvl--------g~pV~~~~~~-e~~alGaA~lA~~ 456 (520)
T PRK10939 410 PSSLVFAGGGSKGKLWSQILADVT--------GLPVKVPVVK-EATALGCAIAAGV 456 (520)
T ss_pred CcEEEEeCCcccCHHHHHHHHHhc--------CCeeEEeccc-CchHHHHHHHHHH
Confidence 356999999998777766555444 4444444332 3556788888753
No 135
>PF12401 DUF3662: Protein of unknown function (DUF2662) ; InterPro: IPR022128 This domain family is found in bacteria, and is approximately 120 amino acids in length. The family is found in association with PF00498 from PFAM. ; PDB: 2LC0_A.
Probab=26.09 E-value=9.2 Score=27.15 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=24.2
Q ss_pred CCCCeEEEECCCCCccceehhhhHhhcccccccccccHHHHhhcCccc
Q psy2717 176 PSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGI 223 (229)
Q Consensus 176 ~~~~~v~v~~~~~~~~~~w~Ggsila~l~~~~~~~Itr~ey~e~G~~~ 223 (229)
|+.+.|.+...+...+.+| +-.+...|..+-.-.+..+.|.=.|+-.
T Consensus 52 PN~y~V~Ls~~D~~~l~~~-~~~l~~el~~~l~~~a~~qgy~~~G~v~ 98 (116)
T PF12401_consen 52 PNVYTVELSPEDYERLSPW-GDRLARELADYLAEHAREQGYTFVGPVT 98 (116)
T ss_dssp --EEEEEEEHHHHHHH-S--SHHHHHHHHHHHHHHHHHHT-B-SS--E
T ss_pred CeeEEEEECHHHHHHHhhh-HHHHHHHHHHHHHHHHHHCCCeecCCEE
Confidence 4444555554444567788 6666666666555667777777777643
No 136
>PLN02669 xylulokinase
Probab=25.02 E-value=64 Score=29.56 Aligned_cols=46 Identities=13% Similarity=0.191 Sum_probs=29.2
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhcc
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL 203 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~l 203 (229)
+.|+++||+|+=+-+.+-+.+-+ ...|.....+ .++-+||+++|..
T Consensus 447 ~~i~~~GGgs~s~~w~Qi~ADVl--------g~pV~~~~~~-ea~alGAA~~A~~ 492 (556)
T PLN02669 447 KRIIATGGASANQSILKLIASIF--------GCDVYTVQRP-DSASLGAALRAAH 492 (556)
T ss_pred cEEEEEcChhcCHHHHHHHHHHc--------CCCeEecCCC-CchHHHHHHHHHH
Confidence 46999999997666655444433 2233333333 3567899999865
No 137
>KOG0683|consensus
Probab=24.79 E-value=93 Score=26.79 Aligned_cols=74 Identities=20% Similarity=0.325 Sum_probs=47.4
Q ss_pred HHHHHHhhcCeEEecCCCC-ccc-------------------hHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHh
Q psy2717 141 VDIRKDLYANTVLSGGTTM-YPG-------------------IADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSIL 200 (229)
Q Consensus 141 ~d~r~~l~~nIiltGG~s~-i~G-------------------l~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsil 200 (229)
.-+|..|+.-|-++|=+.- +|| ....+.+++.+. +.+.+...|.|..+-|-|++
T Consensus 185 ahy~acLyaGl~i~G~N~EvmPgQwEfqvGp~~GI~~gD~lw~aR~il~rVae~----~Gviasf~pKp~~g~WngaG-- 258 (380)
T KOG0683|consen 185 AHYRACLYAGLNISGINVEVMPGQWEFQVGPCEGISMGDQLWMARYILHRVAEK----FGVIASFDPKPILGDWNGAG-- 258 (380)
T ss_pred hhHHHHHhhheeeccccccccCceeEEeecchhcccchhhHHHHHHHHHHHHHH----hCeeEEecCCCCCCcccCcc--
Confidence 3567888888888886532 233 112223333222 25556566778889999932
Q ss_pred hcccccccccccHHHHhhcCccchh
Q psy2717 201 ASLSTFQQMWISKQEYDESGPGIVH 225 (229)
Q Consensus 201 a~l~~~~~~~Itr~ey~e~G~~~~~ 225 (229)
-+..+.|+++|++.|..++.
T Consensus 259 -----~Htn~ST~~mr~~~g~~~i~ 278 (380)
T KOG0683|consen 259 -----CHTNFSTKEMREAGGLKIIE 278 (380)
T ss_pred -----cccccchhHHHhccCHHHHH
Confidence 35667899999999988764
No 138
>PLN02666 5-oxoprolinase
Probab=24.10 E-value=71 Score=32.52 Aligned_cols=19 Identities=11% Similarity=-0.034 Sum_probs=16.5
Q ss_pred eeEEecCCCeeEEEEeeCCe
Q psy2717 4 RKLSTVSLHNKYSNPYGNGY 23 (229)
Q Consensus 4 glVVDiG~~~t~v~pV~~G~ 23 (229)
.+++|||+.+|+|.-| +|.
T Consensus 316 ~I~~DmGGTTtDv~li-~g~ 334 (1275)
T PLN02666 316 VIGFDMGGTSTDVSRY-DGS 334 (1275)
T ss_pred EEEEecCCceeeeEEE-cCc
Confidence 6999999999999988 544
No 139
>TIGR03281 methan_mark_12 putative methanogenesis marker protein 12. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.77 E-value=1e+02 Score=26.03 Aligned_cols=43 Identities=23% Similarity=0.430 Sum_probs=31.6
Q ss_pred CeEEecC--CCCcc-chHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 150 NTVLSGG--TTMYP-GIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 150 nIiltGG--~s~i~-Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
+|+|+|- .+..| .|.+++..-|. .++.++.. .++-.|++++|.
T Consensus 265 ~IvLSGs~g~~r~~~~v~~~I~~~L~------~~V~~L~~----ksAA~G~AiIA~ 310 (326)
T TIGR03281 265 GVVLAGSGGTLREPINFSGKIKRVLS------CKVLVLDS----ESAAIGLALIAE 310 (326)
T ss_pred cEEEeCcchhccCchHHHHHHHHHhC------CCeEEecc----hhhhhhHHHHHH
Confidence 5999997 77778 88888877774 25555543 567788888885
No 140
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=23.70 E-value=53 Score=23.61 Aligned_cols=9 Identities=33% Similarity=0.674 Sum_probs=6.8
Q ss_pred eEEecCCCC
Q psy2717 151 TVLSGGTTM 159 (229)
Q Consensus 151 IiltGG~s~ 159 (229)
|+.+||++.
T Consensus 62 vittGG~g~ 70 (133)
T cd00758 62 VLTTGGTGV 70 (133)
T ss_pred EEECCCCCC
Confidence 778888774
No 141
>PRK14625 hypothetical protein; Provisional
Probab=23.26 E-value=54 Score=23.01 Aligned_cols=36 Identities=14% Similarity=0.206 Sum_probs=20.7
Q ss_pred CCHHHHHHHHHhc----CCHHHHHHhhcCeEEecCCC-CccchH
Q psy2717 126 CGIHETVYNSIMK----CDVDIRKDLYANTVLSGGTT-MYPGIA 164 (229)
Q Consensus 126 ~~l~~~I~~si~~----~~~d~r~~l~~nIiltGG~s-~i~Gl~ 164 (229)
.-|.++|..+++. ... ..++.++. +|||.. .+|||+
T Consensus 65 e~LeDLI~aA~NdA~~k~~~-~~~~~m~~--~tgg~~~~lPG~~ 105 (109)
T PRK14625 65 EVIADLIVAAHADAKKKLDA-KQAQLMQE--AAGPMAGLMGGLP 105 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHHH--HhcCCCCCCCCCC
Confidence 4566666665543 433 33444444 678885 378875
No 142
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=23.09 E-value=2e+02 Score=23.01 Aligned_cols=44 Identities=9% Similarity=-0.033 Sum_probs=28.8
Q ss_pred EEecCCCeeEEEEeeCCeeccccceeecccHHHHHHHHHHHHHh
Q psy2717 6 LSTVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTE 49 (229)
Q Consensus 6 VVDiG~~~t~v~pV~~G~~~~~~~~~~~~GG~~l~~~l~~ll~~ 49 (229)
=||+|.+++.++-+-+|.++.........-=+.+-+.+.+.+.+
T Consensus 4 GIDiGtts~K~vl~d~g~il~~~~~~~~~~~~~~~~~l~~~~~~ 47 (248)
T TIGR00241 4 GIDSGSTTTKMVLMEDGKVIGYKWLDTTPVIEETARAILEALKE 47 (248)
T ss_pred EEEcChhheEEEEEcCCEEEEEEEecCCCCHHHHHHHHHHHHHH
Confidence 48999999999999888887665543222123344456666644
No 143
>PRK00292 glk glucokinase; Provisional
Probab=23.01 E-value=1.5e+02 Score=24.65 Aligned_cols=47 Identities=13% Similarity=-0.017 Sum_probs=29.4
Q ss_pred CcceeEEecCCCeeEEEEee-CC-eeccccceeeccc-HHHHHHHHHHHHHh
Q psy2717 1 MATRKLSTVSLHNKYSNPYG-NG-YALPHAILRLDLA-GRDLTDYLMKILTE 49 (229)
Q Consensus 1 ~~sglVVDiG~~~t~v~pV~-~G-~~~~~~~~~~~~G-G~~l~~~l~~ll~~ 49 (229)
|.-.+.+|||++.+.+.-+- ++ .++.. .+.+.- -+.+.+.+.+++.+
T Consensus 1 ~~~~lgiDIGgT~i~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~l~~ 50 (316)
T PRK00292 1 MKPALVGDIGGTNARFALCDWANGEIEQI--KTYATADYPSLEDAIRAYLAD 50 (316)
T ss_pred CceEEEEEcCccceEEEEEecCCCceeee--EEEecCCCCCHHHHHHHHHHh
Confidence 34468999999999999885 34 43433 222222 23466667676664
No 144
>KOG1794|consensus
Probab=22.99 E-value=1.7e+02 Score=24.67 Aligned_cols=72 Identities=17% Similarity=0.228 Sum_probs=44.7
Q ss_pred CHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCC-ccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehhhhHhhc
Q psy2717 127 GIHETVYNSIMKCDVDIRKDLYANTVLSGGTTM-YPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILAS 202 (229)
Q Consensus 127 ~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~-i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~Ggsila~ 202 (229)
.|..+|...+.+.|++.++---=.|+.+||.-. -..|.+-...+|.... -.-+++.+.+ ..++-+||+++|.
T Consensus 243 ~Lg~~V~aVl~~l~~~~k~g~~l~Iv~vG~V~~Sw~~l~~Gfl~sls~~~-~f~~~~l~~~---k~ssAvgAA~laa 315 (336)
T KOG1794|consen 243 TLGRHVVAVLPQLPPTLKKGKTLPIVCVGGVFDSWDLLQEGFLDSLSDTR-GFERVELYRP---KESSAVGAAILAA 315 (336)
T ss_pred HHHHHHHHHHhhcCchhcccCcceEEEEcchhhHHHHHHHHHHHHhhccc-CccceEEEee---cccchHHHHHHhh
Confidence 466778888888999888743235999998643 3445555555554420 0013444443 4667789888874
No 145
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=22.19 E-value=94 Score=29.28 Aligned_cols=36 Identities=22% Similarity=0.511 Sum_probs=23.7
Q ss_pred CHHHHHHHHHhcCCHHHHHHhhcCeEEecCCCCccchHHHHHH
Q psy2717 127 GIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQK 169 (229)
Q Consensus 127 ~l~~~I~~si~~~~~d~r~~l~~nIiltGG~s~i~Gl~~RL~~ 169 (229)
+.-+++.++|+..+-| -++|||--|++||+..-+.+
T Consensus 765 ~~f~al~EaIn~y~cD-------VlLlTGRPsrlPgvqalfr~ 800 (1014)
T COG4457 765 GVFDALCEAINHYDCD-------VLLLTGRPSRLPGVQALFRH 800 (1014)
T ss_pred chHHHHHHHHhhhccc-------EEEEcCCcccCccHHHHHhh
Confidence 4445556655432222 28899999999999876554
No 146
>PF08260 Kinin: Insect kinin peptide; InterPro: IPR013202 This entry represents neuropeptides that are the first members of the insect kinin-family isolated from the American cockroach. Their occurrence in the retrocerebral complex suggests a physiological role as a neurohormone. The C-terminal sequence Phe-X-Ser-Trp-Gly-NH2 characterised the peptides as members of the insect kinin family. Data suggest a possible involvement of insect kinins in water-balance by regulating the osmoregulation. Insect kinins also mediate visceral muscle contractile activity (myotropic activity) []. These peptides have lengths ranging from 6 to 14 amino acids [].
Probab=22.19 E-value=40 Score=11.96 Aligned_cols=6 Identities=17% Similarity=0.994 Sum_probs=3.0
Q ss_pred Ccccee
Q psy2717 189 RKYSVW 194 (229)
Q Consensus 189 ~~~~~w 194 (229)
|.|.+|
T Consensus 2 pafnsw 7 (8)
T PF08260_consen 2 PAFNSW 7 (8)
T ss_pred cccccc
Confidence 345555
No 147
>PRK03011 butyrate kinase; Provisional
Probab=21.97 E-value=1.1e+02 Score=26.43 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=30.5
Q ss_pred cCeEEecCCCCccchHHHHHHHHHhhCCCCCeEEEECCCCCccceehh
Q psy2717 149 ANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIG 196 (229)
Q Consensus 149 ~nIiltGG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~~~~~~~w~G 196 (229)
+-|+++||.+.-+-|.+++.+.+..+. ++.++...+...+.-.|
T Consensus 297 D~IVlgGGI~~~~~l~~~I~~~l~~~~----pv~i~p~~~e~~A~a~G 340 (358)
T PRK03011 297 DAIVLTGGLAYSKRLVERIKERVSFIA----PVIVYPGEDEMEALAEG 340 (358)
T ss_pred CEEEEeCccccCHHHHHHHHHHHHhhC----CeEEEeCCCHHHHHHHH
Confidence 449999999987778888888887653 56776665544444455
No 148
>KOG3445|consensus
Probab=21.53 E-value=1.1e+02 Score=22.36 Aligned_cols=31 Identities=26% Similarity=0.522 Sum_probs=22.3
Q ss_pred cCCCCccchHHHHHHHHHhhCCCCCeEEEECCC
Q psy2717 155 GGTTMYPGIADRMQKEITALAPSTIKIKIIAPP 187 (229)
Q Consensus 155 GG~s~i~Gl~~RL~~el~~~~~~~~~v~v~~~~ 187 (229)
||+| .|+.+.|+.||..+...+..|.++..+
T Consensus 34 ggSS--rGmR~Fle~~L~~~a~enP~v~i~v~~ 64 (145)
T KOG3445|consen 34 GGSS--RGMREFLESELPDLARENPGVVIYVEP 64 (145)
T ss_pred CCcc--HHHHHHHHHHHHHHHhhCCCeEEEEec
Confidence 7777 799999999998776655455555443
No 149
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=21.30 E-value=2.3e+02 Score=23.47 Aligned_cols=48 Identities=8% Similarity=-0.069 Sum_probs=31.6
Q ss_pred cceeEEecCCCeeEEEEe-eCCeeccccceeeccc------HHHHHHHHHHHHHh
Q psy2717 2 ATRKLSTVSLHNKYSNPY-GNGYALPHAILRLDLA------GRDLTDYLMKILTE 49 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~G------G~~l~~~l~~ll~~ 49 (229)
...+-||||...+.++-+ .+|.++.+.....+.- -..+.+.+.+++..
T Consensus 6 ~~~lgidIggt~i~~~l~d~~g~~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~ 60 (314)
T COG1940 6 MTVLGIDIGGTKIKVALVDLDGEILLRERIPTPTPDPEEAILEAILALVAELLKQ 60 (314)
T ss_pred cEEEEEEecCCEEEEEEECCCCcEEEEEEEecCCCCchhHHHHHHHHHHHHHHHh
Confidence 456889999999999988 5588766555444432 22455555555554
No 150
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=20.93 E-value=2e+02 Score=23.60 Aligned_cols=45 Identities=13% Similarity=0.027 Sum_probs=27.6
Q ss_pred EecCCCeeEEEEee-CCee-ccccceeecc-cHHH---HHHHHHHHHHhcC
Q psy2717 7 STVSLHNKYSNPYG-NGYA-LPHAILRLDL-AGRD---LTDYLMKILTERG 51 (229)
Q Consensus 7 VDiG~~~t~v~pV~-~G~~-~~~~~~~~~~-GG~~---l~~~l~~ll~~~~ 51 (229)
||+|..+|-++-+. +|.. ........+. +++. ..+.|.+++.+.+
T Consensus 6 IDiGStttK~Vlid~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 56 (262)
T TIGR02261 6 IDIGTGAIKTVLFEVDGDKEECLAKRNDRIRQRDPFKLAEDAYDDLLEEAG 56 (262)
T ss_pred EEcCcccEEEEEEecCCCeeEEEEEEEecCCCCCHHHHHHHHHHHHHHHcC
Confidence 79999999999998 3531 1111222333 4444 6667777776655
No 151
>KOG1385|consensus
Probab=20.55 E-value=84 Score=27.68 Aligned_cols=16 Identities=6% Similarity=-0.122 Sum_probs=13.9
Q ss_pred cceeEEecCCCeeEEE
Q psy2717 2 ATRKLSTVSLHNKYSN 17 (229)
Q Consensus 2 ~sglVVDiG~~~t~v~ 17 (229)
.|.=|||.|+++|+|+
T Consensus 213 ~tvgv~DLGGGSTQi~ 228 (453)
T KOG1385|consen 213 RTVGVVDLGGGSTQIT 228 (453)
T ss_pred CceEEEEcCCceEEEE
Confidence 4667999999999986
No 152
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=20.34 E-value=2e+02 Score=23.79 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=28.4
Q ss_pred eEEec-CCCCc-cchHHHHHHHHHhhCCC-CCeEEEECCCC-CccceehhhhHhhcc
Q psy2717 151 TVLSG-GTTMY-PGIADRMQKEITALAPS-TIKIKIIAPPE-RKYSVWIGGSILASL 203 (229)
Q Consensus 151 IiltG-G~s~i-~Gl~~RL~~el~~~~~~-~~~v~v~~~~~-~~~~~w~Ggsila~l 203 (229)
|++.| |.+.+ +-|.+++.+.+...... .....+....- ...+..+||..++..
T Consensus 251 IvigG~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ga~~~~~~ 307 (314)
T COG1940 251 IVIGGGGVSALGDLLLPRLRKLLAKYLFPPVLRPRIVEAALGGNDAGLIGAALLALL 307 (314)
T ss_pred EEEECcccccchhHHHHHHHHHHHHhhcchhcccchhhhhcccccccchhHHHHHHH
Confidence 66666 55544 67777777777655432 11112222211 245677777776643
No 153
>PTZ00452 actin; Provisional
Probab=20.21 E-value=83 Score=27.17 Aligned_cols=19 Identities=0% Similarity=-0.403 Sum_probs=15.3
Q ss_pred CcceeEEecCCCeeEEEEe
Q psy2717 1 MATRKLSTVSLHNKYSNPY 19 (229)
Q Consensus 1 ~~sglVVDiG~~~t~v~pV 19 (229)
|.+++|+|+|.+.|.+---
T Consensus 4 ~~~~vViD~Gs~~~k~G~a 22 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIA 22 (375)
T ss_pred CCCEEEEECCCCeEEEeeC
Confidence 4578999999999996443
No 154
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=20.12 E-value=3.1e+02 Score=22.40 Aligned_cols=47 Identities=9% Similarity=-0.003 Sum_probs=30.4
Q ss_pred ceeEEecCCCeeEEEEe-eCCeeccccceeecc--cHHHHHHHHHHHHHh
Q psy2717 3 TRKLSTVSLHNKYSNPY-GNGYALPHAILRLDL--AGRDLTDYLMKILTE 49 (229)
Q Consensus 3 sglVVDiG~~~t~v~pV-~~G~~~~~~~~~~~~--GG~~l~~~l~~ll~~ 49 (229)
..+.||||.+.+.++.+ .+|.++.......+. ....+-+.+.+++.+
T Consensus 2 ~~lgvdig~~~i~~~l~dl~g~i~~~~~~~~~~~~~~~~~~~~i~~~i~~ 51 (291)
T PRK05082 2 TTLAIDIGGTKIAAALVGEDGQIRQRRQIPTPASQTPEALRQALSALVSP 51 (291)
T ss_pred cEEEEEECCCEEEEEEEcCCCcEEEEEEecCCCCCCHHHHHHHHHHHHHH
Confidence 35889999999999888 578777544333332 234455555555543
Done!