RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2717
(229 letters)
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 419 bits (1078), Expect = e-149
Identities = 192/215 (89%), Positives = 202/215 (93%)
Query: 15 YSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVA 74
++ P GYALPHAILRLDLAGRDLTDY+MKILTERGYSFTTTAEREIVRDIKEKL YVA
Sbjct: 162 HTVPIYEGYALPHAILRLDLAGRDLTDYMMKILTERGYSFTTTAEREIVRDIKEKLAYVA 221
Query: 75 LDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYN 134
LDFE EM TAA+S++LEKSYELPDGQVITIGNERFRCPEALFQPSFLGMES GIHET YN
Sbjct: 222 LDFEAEMQTAASSSALEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESAGIHETTYN 281
Query: 135 SIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVW 194
SIMKCDVDIRKDLY N VLSGGTTM+PGIADRM KE+TALAPST+KIKIIAPPERKYSVW
Sbjct: 282 SIMKCDVDIRKDLYGNVVLSGGTTMFPGIADRMNKELTALAPSTMKIKIIAPPERKYSVW 341
Query: 195 IGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229
IGGSILASLSTFQQMWISK+EYDESGP IVHRKCF
Sbjct: 342 IGGSILASLSTFQQMWISKEEYDESGPSIVHRKCF 376
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 367 bits (944), Expect = e-128
Identities = 133/209 (63%), Positives = 158/209 (75%), Gaps = 3/209 (1%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81
GY L AI R DLAG DLTDYL K+L+ R YSF T AE E+VRDIKE LCYV+ D +
Sbjct: 161 GYVLQKAIRRSDLAGDDLTDYLRKLLSSRTYSFNTYAEEEVVRDIKESLCYVSDDPFGD- 219
Query: 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDV 141
TAA+S+ SYELPDG VI +GNERFR PE LF PS +G ES GI E +Y+SI CDV
Sbjct: 220 -TAASSSPPTVSYELPDGYVIILGNERFRVPEILFNPSLIGSESAGIPELIYDSINACDV 278
Query: 142 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPP-ERKYSVWIGGSIL 200
D+R L AN V++GGTT++PG +R++KE+ LAPS +K+KIIAPP ERKYS WIGGSIL
Sbjct: 279 DLRPSLLANIVVTGGTTLFPGFTERLEKELAQLAPSGVKVKIIAPPNERKYSAWIGGSIL 338
Query: 201 ASLSTFQQMWISKQEYDESGPGIVHRKCF 229
ASL TFQQMW+SKQEY+E G +V RKCF
Sbjct: 339 ASLGTFQQMWVSKQEYEEHGSSVVERKCF 367
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 367 bits (944), Expect = e-128
Identities = 155/214 (72%), Positives = 184/214 (85%), Gaps = 2/214 (0%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P GY+LPHAI RLD+AGRDLT+Y+MKIL ERG +FTTTAE+EIVRDIKEKLCY+ALDF
Sbjct: 165 PIYEGYSLPHAIHRLDVAGRDLTEYMMKILHERGTTFTTTAEKEIVRDIKEKLCYIALDF 224
Query: 78 EQEMATAAASTSL-EKSYELPDGQVITIGNERFRCPEALFQPSFLGMESC-GIHETVYNS 135
++EM +A S+ E+SYELPDG +IT+G+ERFRCPEALFQPS +G E GIHE + S
Sbjct: 225 DEEMGNSAGSSDKYEESYELPDGTIITVGSERFRCPEALFQPSLIGKEEPPGIHELTFQS 284
Query: 136 IMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 195
I KCD+DIRKDLY N VLSGGTTMY G+ +R+ KE+T LAPST+KIK++APPERKYSVWI
Sbjct: 285 INKCDIDIRKDLYGNIVLSGGTTMYRGLPERLTKELTTLAPSTMKIKVVAPPERKYSVWI 344
Query: 196 GGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229
GGSIL+SL TFQQMW++K+EYDESGP IVHRKCF
Sbjct: 345 GGSILSSLPTFQQMWVTKEEYDESGPSIVHRKCF 378
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 352 bits (906), Expect = e-123
Identities = 139/212 (65%), Positives = 172/212 (81%), Gaps = 3/212 (1%)
Query: 21 NGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80
+GY LPHAI R+D+AGRD+TDYL ++L+ERGY F ++AE EIVR+IKEKLCYVA DFE+E
Sbjct: 162 DGYVLPHAIKRIDIAGRDITDYLKELLSERGYQFNSSAEFEIVREIKEKLCYVAEDFEKE 221
Query: 81 MATA---AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIM 137
M A + S+ LEK+YELPDG I +GNERFR PE LF P +G+E GIHE VY SI
Sbjct: 222 MKLARESSESSKLEKTYELPDGNTIKVGNERFRIPEILFSPELIGLEQKGIHELVYESIQ 281
Query: 138 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGG 197
KCD+D+RKDLY N VLSGG+T+ PG +R++KE+ LAP +K+K+IAPPERKYSVW+GG
Sbjct: 282 KCDIDVRKDLYENIVLSGGSTLIPGFGERLEKELKQLAPKKLKVKVIAPPERKYSVWLGG 341
Query: 198 SILASLSTFQQMWISKQEYDESGPGIVHRKCF 229
SILASLSTF+ MWI+K+EY+ESG IV RKCF
Sbjct: 342 SILASLSTFEDMWITKKEYEESGSQIVERKCF 373
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 256 bits (656), Expect = 6e-85
Identities = 108/209 (51%), Positives = 149/209 (71%), Gaps = 3/209 (1%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81
GY++ + I R D+AGRD+T YL +L + G+ F T+AE E+V+++KE CYV+ + +E
Sbjct: 174 GYSITNTITRTDVAGRDITTYLGYLLRKNGHLFNTSAEMEVVKNMKENCCYVSFNMNKEK 233
Query: 82 ATA-AASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCD 140
++ A T+L Y LPDG I IG+ER+R PE LF PS LG+E G+ E + SI + D
Sbjct: 234 NSSEKALTTL--PYILPDGSQILIGSERYRAPEVLFNPSILGLEYLGLSELIVTSITRAD 291
Query: 141 VDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSIL 200
+D+R+ LY++ VLSGGTTM+ G DR+ EI AP I I+I APPERK+S +IGGSIL
Sbjct: 292 MDLRRTLYSHIVLSGGTTMFHGFGDRLLNEIRKFAPKDITIRISAPPERKFSTFIGGSIL 351
Query: 201 ASLSTFQQMWISKQEYDESGPGIVHRKCF 229
ASL+TF+++WISKQE+DE G I+HRK F
Sbjct: 352 ASLATFKKIWISKQEFDEYGSVILHRKTF 380
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 256 bits (654), Expect = 8e-85
Identities = 115/212 (54%), Positives = 153/212 (72%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P G+ +P AI +++LAGR TDYL +IL E GYS T +R IV++IKE+LCY ALD
Sbjct: 164 PVFEGHQIPQAITKINLAGRLCTDYLTQILQELGYSLTEPHQRIIVKNIKERLCYTALDP 223
Query: 78 EQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIM 137
+ E S S + Y+LPDG ++TI +++FRC E LFQP +G+E GIH Y+SI
Sbjct: 224 QDEKRIYKESNSQDSPYKLPDGNILTIKSQKFRCSEILFQPKLIGLEVAGIHHLAYSSIK 283
Query: 138 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGG 197
KCD+D+R++L N VLSGGTT++PGIA+R+ E+T L PS +KI++ APP+R++S WIGG
Sbjct: 284 KCDLDLRQELCRNIVLSGGTTLFPGIANRLSNELTNLVPSQLKIQVAAPPDRRFSAWIGG 343
Query: 198 SILASLSTFQQMWISKQEYDESGPGIVHRKCF 229
SI +LST Q WI +QEYDE GP IVHRKCF
Sbjct: 344 SIQCTLSTQQPQWIKRQEYDEQGPSIVHRKCF 375
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 233 bits (595), Expect = 6e-75
Identities = 109/270 (40%), Positives = 148/270 (54%), Gaps = 61/270 (22%)
Query: 21 NGYALPHAILRLDLAGRDLTDYLMKILTE-----RGYSFTTT---AEREIVRDIKEKLC- 71
+G LP A+ R+D+ GRD+TDYL K+L E RGY+ + EIV +IKE++C
Sbjct: 175 DGIVLPKAVKRIDIGGRDITDYLKKLLREKYPPSRGYNLKSELVEYSSEIVNEIKEEVCE 234
Query: 72 ------YVALDFEQEMATA----------------AASTSLEKSYELPDGQVITIGNE-R 108
YV+LD E+E ++ ++S ELPDG+ I GNE R
Sbjct: 235 TDDESAYVSLDAEEEFEEEEEKPAEKSTESTFQLSKETSIAKESKELPDGEEIEFGNEER 294
Query: 109 FRCPEALFQPSF-----------------------------LGMESCGIHETVYNSIMKC 139
F+ PE LF+P LG + G+ E VY SI C
Sbjct: 295 FKAPEILFKPELPISGLEEAGKIDESKQELVAENYEISPTNLGNDIAGLPELVYQSIQIC 354
Query: 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 199
D D+RK LY+N VL+GGT+ PG A+R+QKE+T+LAPS K+ +I PP+ W+G SI
Sbjct: 355 DEDVRKSLYSNIVLTGGTSKIPGFAERLQKELTSLAPSIWKVSVIPPPDPSLDAWLGASI 414
Query: 200 LASLSTFQQMWISKQEYDESGPGIVHRKCF 229
LASL TFQQ+WI+K+EY+E GP I+ K F
Sbjct: 415 LASLETFQQLWITKEEYEEHGPDILQEKRF 444
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 157 bits (400), Expect = 3e-46
Identities = 77/238 (32%), Positives = 119/238 (50%), Gaps = 35/238 (14%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P +GY + +I + LAGRD+T+++ ++L ERG + + IKEK CYVA D
Sbjct: 176 PVVDGYVIGSSIKHIPLAGRDITNFIQQMLRERGEPIPAEDILLLAQRIKEKYCYVAPDI 235
Query: 78 EQEMAT------------AAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGME- 124
+E A ++ +K Y + +G ERF PE F P E
Sbjct: 236 AKEFEKYDSDPKNHFKKYTAVNSVTKKPYT------VDVGYERFLGPEMFFHPEIFSSEW 289
Query: 125 SCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITA----------- 173
+ + E V ++I C +D R+ LY N VLSGG+TM+ G R+Q+++
Sbjct: 290 TTPLPEVVDDAIQSCPIDCRRPLYKNIVLSGGSTMFKGFDKRLQRDVRKRVDRRLKKAEE 349
Query: 174 -----LAPSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHR 226
L P I + +++ P ++Y+VW GGS+LAS F+++ +K EYDE GP I
Sbjct: 350 LSGGKLKPIPIDVNVVSHPRQRYAVWYGGSMLASSPEFEKVCHTKAEYDEYGPSICRY 407
>gnl|CDD|222317 pfam13684, Dak1_2, Dihydroxyacetone kinase family. This is the
kinase domain of the dihydroxyacetone kinase family.
Length = 309
Score = 31.0 bits (71), Expect = 0.41
Identities = 9/24 (37%), Positives = 13/24 (54%)
Query: 142 DIRKDLYANTVLSGGTTMYPGIAD 165
++ K L + V+ GG TM P D
Sbjct: 106 ELFKSLGVDVVIEGGQTMNPSTED 129
>gnl|CDD|233076 TIGR00657, asp_kinases, aspartate kinase. Aspartate kinase
catalyzes a first step in the biosynthesis from Asp of
Lys (and its precursor diaminopimelate), Met, and Thr.
In E. coli, a distinct isozyme is inhibited by each of
the three amino acid products. The Met-sensitive (I) and
Thr-sensitive (II) forms are bifunctional enzymes fused
to homoserine dehydrogenases and form homotetramers,
while the Lys-sensitive form (III) is a monofunctional
homodimer.The Lys-sensitive enzyme of Bacillus subtilis
resembles the E. coli form but is an alpha 2/beta 2
heterotetramer, where the beta subunit is translated
from an in-phase alternative initiator at Met-246. This
may be a feature of a number of closely related forms,
including a paralog from B. subtilis [Amino acid
biosynthesis, Aspartate family].
Length = 441
Score = 29.2 bits (66), Expect = 1.7
Identities = 15/60 (25%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 139 CDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGS 198
V++ K L +++ G PG+A ++ ALA + I I++I+ E S +
Sbjct: 370 SSVEVEKGLAKVSLVGAGMKSAPGVASKI---FEALAQNGINIEMISSSEINISFVVDEK 426
>gnl|CDD|132329 TIGR03286, methan_mark_15, putative methanogenesis marker protein
15. Members of this protein family, to date, are found
in a completed prokaryotic genome if and only if the
species is one of the archaeal methanogens. The exact
function is unknown, but likely is linked to
methanogenesis or a process closely connected to it.
Related proteins include the BadF/BadG/BcrA/BcrD ATPase
family (pfam01869), which includes an activator for
(R)-2-hydroxyglutaryl-CoA dehydratase [Energy
metabolism, Methanogenesis].
Length = 404
Score = 28.6 bits (64), Expect = 2.4
Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 13/73 (17%)
Query: 130 ETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPER 189
E VY ++ ++D+R+ + +L GGT++ G+ + + I+++ P
Sbjct: 343 EQVYEQQLQ-EIDVREPV----ILVGGTSLIEGLVKALGD--------LLGIEVVVPEYS 389
Query: 190 KYSVWIGGSILAS 202
+Y +G ++LAS
Sbjct: 390 QYIGAVGAALLAS 402
>gnl|CDD|224577 COG1663, LpxK, Tetraacyldisaccharide-1-P 4'-kinase [Cell envelope
biogenesis, outer membrane].
Length = 336
Score = 28.8 bits (65), Expect = 2.5
Identities = 15/67 (22%), Positives = 22/67 (32%), Gaps = 13/67 (19%)
Query: 16 SNPYGNGYALPHAILRLDLAGRDLTDYL-------------MKILTERGYSFTTTAEREI 62
+GNG+ LP LR D + M++ + ER
Sbjct: 168 QRGFGNGFLLPAGPLREPPKRLKSADAIITNGGGSRADPIPMRLAPGHAPNLVAPGERSD 227
Query: 63 VRDIKEK 69
V D+K K
Sbjct: 228 VADLKGK 234
>gnl|CDD|180668 PRK06719, PRK06719, precorrin-2 dehydrogenase; Validated.
Length = 157
Score = 27.6 bits (61), Expect = 3.3
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Query: 143 IRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIK 180
IR D Y T+ + G P R+++E+T++ P IK
Sbjct: 114 IRNDEYVVTISTSGKD--PSFTKRLKQELTSILPKLIK 149
>gnl|CDD|236018 PRK07431, PRK07431, aspartate kinase; Provisional.
Length = 587
Score = 28.3 bits (64), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Query: 160 YPGIADRMQKEITALAPSTIKIKIIAPPERKYSV 193
PG+A RM ALA + I I++IA E + S
Sbjct: 532 TPGVAARM---FRALADAGINIEMIATSEIRTSC 562
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 28.3 bits (64), Expect = 3.5
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 8/36 (22%)
Query: 153 LSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPE 188
L GGT PG + +K+ + + P
Sbjct: 227 LVGGTCCLPGFEEVFEKQ--------TGLPVHKPQH 254
>gnl|CDD|215761 pfam00162, PGK, Phosphoglycerate kinase.
Length = 383
Score = 28.2 bits (64), Expect = 3.6
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 7/41 (17%)
Query: 159 MYPGIADR-MQKEITALAPSTIKIKIIAPPERKYSVWIGGS 198
+ P A M+KE+ AL+ K + PER + +GG+
Sbjct: 163 LPPSAAGFLMEKELEALS------KALENPERPFVAILGGA 197
>gnl|CDD|204906 pfam12401, DUF3662, Protein of unknown function (DUF2662). This
domain family is found in bacteria, and is approximately
120 amino acids in length. The family is found in
association with pfam00498.
Length = 116
Score = 26.7 bits (60), Expect = 5.0
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 31 RLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRD 65
D +L DYL + E+GY+F +D
Sbjct: 70 YGDTLADELADYLAEHAREQGYTFVGPVTVRFEQD 104
>gnl|CDD|176404 cd01809, Scythe_N, Ubiquitin-like domain of Scythe protein.
Scythe protein (also known as Bat3) is an apoptotic
regulator that is highly conserved in eukaryotes and
contains a ubiquitin-like domain near its N-terminus.
Scythe binds reaper, a potent apoptotic inducer, and
Scythe/Reaper are thought to signal apoptosis, in part
through regulating the folding and activity of
apoptotic signaling molecules.
Length = 72
Score = 25.7 bits (57), Expect = 6.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 45 KILTERGYSFTTTAEREIVRDIKEKLCYV 73
K L + ++FT E V D+KEK+
Sbjct: 6 KTLDSQTHTFTVEEE-ITVLDLKEKIAEE 33
>gnl|CDD|181288 PRK08204, PRK08204, hypothetical protein; Provisional.
Length = 449
Score = 27.7 bits (62), Expect = 6.5
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 11/53 (20%)
Query: 20 GNGYALPHAILRLD---LAGRDLT--------DYLMKILTERGYSFTTTAERE 61
G A P + +L L G DL D +K+L + G SF+ T E E
Sbjct: 224 GPWGATPRGVEQLHDAGLLGPDLNLVHGNDLSDDELKLLADSGGSFSVTPEIE 276
>gnl|CDD|232870 TIGR00198, cat_per_HPI, catalase/peroxidase HPI. As catalase,
this enzyme catalyzes the dismutation of two molecules
of hydrogen peroxide to dioxygen and two molecules of
water. As a peroxidase, it uses hydrogen peroxide to
oxidize donor compounds and produce water. KatG from E.
coli is a homotetramer with two non-covalently
associated iron protoheme IX groups per tetramer, but
the ortholog from Synechococcus sp. is a homodimer with
one protoheme. Important sites (numbered according to
E. coli KatG) include heme ligands His-106 and His-267
and active site Trp-318. Note that the translation
PID:g296476 from accession X71420 from Rhodobacter
capsulatus B10 contains extensive frameshift
differences from the rest of the orthologous family
[Cellular processes, Detoxification].
Length = 716
Score = 27.6 bits (61), Expect = 6.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 12 HNKYSNPYGNGYALPHAILRLDLAG--RDL 39
H++ +NP G + +LDLA +DL
Sbjct: 32 HDRKTNPMGEDFDYAEEFQQLDLAAVKQDL 61
>gnl|CDD|224378 COG1461, COG1461, Predicted kinase related to dihydroxyacetone
kinase [General function prediction only].
Length = 542
Score = 27.6 bits (62), Expect = 7.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 142 DIRKDLYANTVLSGGTTMYPGIADRM 167
D+ K L A+ V+ GG TM P D +
Sbjct: 340 DLFKSLGADVVIEGGQTMNPSTDDIV 365
>gnl|CDD|215876 pfam00359, PTS_EIIA_2, Phosphoenolpyruvate-dependent sugar
phosphotransferase system, EIIA 2.
Length = 141
Score = 26.4 bits (59), Expect = 7.2
Identities = 8/17 (47%), Positives = 9/17 (52%)
Query: 13 NKYSNPYGNGYALPHAI 29
S GNG A+PHA
Sbjct: 46 KLGSTGIGNGIAIPHAR 62
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,715,352
Number of extensions: 1108416
Number of successful extensions: 995
Number of sequences better than 10.0: 1
Number of HSP's gapped: 983
Number of HSP's successfully gapped: 32
Length of query: 229
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 135
Effective length of database: 6,768,326
Effective search space: 913724010
Effective search space used: 913724010
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.7 bits)