RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2717
(229 letters)
>2fxu_A Alpha-actin-1, actin, alpha skeletal muscle; actin complexed to
bistramide A, structural protein; HET: HIC ATP BID;
1.35A {Oryctolagus cuniculus} SCOP: c.55.1.1 c.55.1.1
PDB: 1h1v_A* 1kxp_A* 1lot_B* 1m8q_7* 1ma9_B* 1mvw_1*
1nwk_A* 1o18_1* 1o19_1* 1o1a_1* 1o1b_0* 1o1c_0* 1o1d_0*
1o1e_1* 1o1f_0* 1o1g_1* 1j6z_A* 1qz6_A* 1rdw_X* 1rfq_A*
...
Length = 375
Score = 439 bits (1132), Expect = e-157
Identities = 192/208 (92%), Positives = 201/208 (96%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81
GYALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDFE EM
Sbjct: 168 GYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDFENEM 227
Query: 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDV 141
ATAA+S+SLEKSYELPDGQVITIGNERFRCPE LFQPSF+GMES GIHET YNSIMKCD+
Sbjct: 228 ATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIMKCDI 287
Query: 142 DIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILA 201
DIRKDLYAN V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGGSILA
Sbjct: 288 DIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGGSILA 347
Query: 202 SLSTFQQMWISKQEYDESGPGIVHRKCF 229
SLSTFQQMWI+KQEYDE+GP IVHRKCF
Sbjct: 348 SLSTFQQMWITKQEYDEAGPSIVHRKCF 375
>1k8k_B ARP2, actin-like protein 2; beta-propeller, structural protein;
2.00A {Bos taurus} SCOP: c.55.1.1 PDB: 1tyq_B* 1u2v_B*
2p9i_B* 2p9l_B 2p9n_B* 2p9p_B* 2p9s_B* 2p9u_B* 3dxk_B*
3dxm_B* 3rse_B 2p9k_B*
Length = 394
Score = 420 bits (1082), Expect = e-149
Identities = 97/219 (44%), Positives = 140/219 (63%), Gaps = 12/219 (5%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81
G++LPH RLD+AGRD+T YL+K+L RGY+F +A+ E VR IKEKLCYV + EQE
Sbjct: 172 GFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNIEQEQ 231
Query: 82 ATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDV 141
A +T L +SY LPDG++I +G ERF PEALFQP + +E G+ E ++N+I D+
Sbjct: 232 KLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQAADI 291
Query: 142 DIRKDLYANTVLSGGTTMYPGIADRMQKEITAL-----------APSTIKIKIIAPPERK 190
D R + Y + VLSGG+TMYPG+ R+++E+ L S KI+I PP RK
Sbjct: 292 DTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVEKLSKFKIRIEDPPRRK 351
Query: 191 YSVWIGGSILASLST-FQQMWISKQEYDESGPGIVHRKC 228
+ V++GG++LA + W+++QEY E G ++ +
Sbjct: 352 HMVFLGGAVLADIMKDKDNFWMTRQEYQEKGVRVLEKLG 390
>1k8k_A ARP3, actin-like protein 3, actin-2; beta-propeller, structural
protein; 2.00A {Bos taurus} SCOP: c.55.1.1 c.55.1.1 PDB:
1tyq_A* 1u2v_A* 2p9i_A* 2p9k_A* 2p9l_A 2p9n_A* 2p9p_A*
2p9s_A* 2p9u_A* 3dxk_A* 3dxm_A* 3rse_A
Length = 418
Score = 417 bits (1075), Expect = e-148
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 21 NGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQE 80
GY + I + +AGRD+T ++ ++L +R E + +KE+ YV D +E
Sbjct: 182 EGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDLVKE 241
Query: 81 MATAAASTS-LEKSYELPDGQ-----VITIGNERFRCPEALFQPSFLGME-SCGIHETVY 133
S K Y + I +G ERF PE F P F + + I E V
Sbjct: 242 FNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISEVVD 301
Query: 134 NSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT----------------ALAPS 177
I C +D+R+ LY N VLSGG+TM+ R+Q+++ L P
Sbjct: 302 EVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRLKPK 361
Query: 178 TIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRK-CF 229
I +++I ++Y+VW GGS+LAS F Q+ +K++Y+E GP I F
Sbjct: 362 PIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 414
>3dwl_A Actin-related protein 3; propellor, actin-binding, ATP-binding,
cytoskeleton, nucleot binding, WD repeat; HET: ATP;
3.78A {Schizosaccharomyces pombe}
Length = 427
Score = 393 bits (1010), Expect = e-138
Identities = 60/226 (26%), Positives = 100/226 (44%), Gaps = 22/226 (9%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFEQEM 81
GY + +I + LAGRD+T ++ +L +R ++ + IKE+ CYV D +E
Sbjct: 199 GYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSS---LKTAERIKEECCYVCPDIVKEF 255
Query: 82 ATAAASTSLEKS----YELPDGQVITIGNERFRCPEALFQPSFLGMESC-GIHETVYNSI 136
+ I +G ERF PE F P + + E V N +
Sbjct: 256 SRFDREPDRYLKYASESITGHSTTIDVGFERFLAPEIFFNPEIASSDFLTPLPELVDNVV 315
Query: 137 MKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST--------------IKIK 182
+D+RK LY N VLSGG+T++ +R+Q+++ + + +
Sbjct: 316 QSSPIDVRKGLYKNIVLSGGSTLFKNFGNRLQRDLKRIVDERIHRSEMLSGAKSGGVDVN 375
Query: 183 IIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKC 228
+I+ ++ +VW GGS+LA F +K +Y+E G I R
Sbjct: 376 VISHKRQRNAVWFGGSLLAQTPEFGSYCHTKADYEEYGASIARRYQ 421
>3qb0_A Actin-related protein 4; actin fold, ATP binding, nucleus,
structural protein; HET: ATP; 3.40A {Saccharomyces
cerevisiae}
Length = 498
Score = 281 bits (721), Expect = 1e-93
Identities = 57/174 (32%), Positives = 84/174 (48%), Gaps = 11/174 (6%)
Query: 59 EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQP 118
+R + + V E+E P NE + P +P
Sbjct: 332 KRTKPSGVNKSDKKVTPTEEKEQ-------EAVSKSTSPAANSADTPNETGKRPLEEEKP 384
Query: 119 SFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPST 178
E G+ + VY+SIM DVD+R L N VL+GGT+ PG++DR+ E+ + PS
Sbjct: 385 PKENNELIGLADLVYSSIMSSDVDLRATLAHNVVLTGGTSSIPGLSDRLMTELNKILPS- 443
Query: 179 IKIKIIAPP---ERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIVHRKCF 229
+K +I+ ER+Y W+GGSIL SL TF Q+W+ K+EY+E G + F
Sbjct: 444 LKFRILTTGHTIERQYQSWLGGSILTSLGTFHQLWVGKKEYEEVGVERLLNDRF 497
Score = 172 bits (437), Expect = 3e-51
Identities = 37/196 (18%), Positives = 62/196 (31%), Gaps = 31/196 (15%)
Query: 22 GYALPHAILRLDLAGRDLTDYLMKILTERGY-------------------------SFTT 56
G L + R +AG+ + + K L + +
Sbjct: 182 GMTLSKSTRRNFIAGKFINHLIKKALEPKEIIPLFAIKQRKPEFIKKTFDYEVDKSLYDY 241
Query: 57 TAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITIGNE-RFRCPEAL 115
R ++ KE LC++ E S++ ++S E P + I NE R+ E L
Sbjct: 242 ANNRGFFQECKETLCHICPTKTLEETKTELSSTAKRSIESPWNEEIVFDNETRYGFAEEL 301
Query: 116 FQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALA 175
F P + + + NS + T SG + +KE A++
Sbjct: 302 FLPKEDDIPA---NWPRSNSGVVKTWRNDYVPLKRTKPSGVNKSDKKVTPTEEKEQEAVS 358
Query: 176 PSTIKI--KIIAPPER 189
ST P E
Sbjct: 359 KSTSPAANSADTPNET 374
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 2e-04
Identities = 35/234 (14%), Positives = 72/234 (30%), Gaps = 56/234 (23%)
Query: 19 YGNGYALPH---AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVAL 75
Y L A + + +D+ D IL++ ++ + +L + L
Sbjct: 16 YQYKDILSVFEDAFVD-NFDCKDVQDMPKSILSKEEIDHIIMSKDAVSG--TLRLFWTLL 72
Query: 76 DFEQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNS 135
++EM L +Y+ + + QPS + + +YN
Sbjct: 73 SKQEEMVQKFVEEVLRINYKF-----LM---SPIK--TEQRQPSMMTRMYIEQRDRLYND 122
Query: 136 ---IMKCDV-------DIRKDLY-----ANTVLSGGTTMYPGIADRMQKEITALAPSTIK 180
K +V +R+ L N ++ G + G K T +A
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDG---V-LGSG----K--TWVALDVCL 172
Query: 181 -IKIIAPPERK-YSVWIG-------GSILASLST----FQQMWISKQEYDESGP 221
K+ + K + W+ ++L L W S+ ++ +
Sbjct: 173 SYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIK 224
>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold,
ATPase, electron transfer, ATP/ADP binding; HET: ANP;
1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A
Length = 276
Score = 32.9 bits (75), Expect = 0.055
Identities = 19/75 (25%), Positives = 31/75 (41%), Gaps = 10/75 (13%)
Query: 127 GIHETVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAP 186
GIH +V + + R + N V+ GG GI M +E I +II P
Sbjct: 188 GIHTSVAKRVSS--LVKRIGVQRNVVMVGGVARNSGIVRAMARE--------INTEIIVP 237
Query: 187 PERKYSVWIGGSILA 201
+ + +G ++ A
Sbjct: 238 DIPQLTGALGAALYA 252
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.075
Identities = 36/208 (17%), Positives = 56/208 (26%), Gaps = 92/208 (44%)
Query: 32 LDLAGRDLTDY-------LMKILTERGYSFT----TTAEREIVRDIKEK----------- 69
T Y L+ T+ FT T E+ D+K K
Sbjct: 1707 FKEINEHSTSYTFRSEKGLLS-ATQ----FTQPALTLMEKAAFEDLKSKGLIPADATFAG 1761
Query: 70 --------LCYVA--LDFE----------QEMATAAASTSLEKS----YELPDGQVITIG 105
L +A + E M A L +S + G+V
Sbjct: 1762 HSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 106 NERFRCPEALFQ-PSFLGMESCGIHETV-YNSIMKCDVDIRKDLYAN--TVLSGGTTMYP 161
++ EAL +G + + E V YN N V +G
Sbjct: 1822 SQ-----EALQYVVERVGKRTGWLVEIVNYNV-------------ENQQYVAAG------ 1857
Query: 162 GIADRMQKEITAL-----APSTIKIKII 184
++ AL + IK++ I
Sbjct: 1858 --------DLRALDTVTNVLNFIKLQKI 1877
Score = 28.5 bits (63), Expect = 2.4
Identities = 22/130 (16%), Positives = 41/130 (31%), Gaps = 38/130 (29%)
Query: 4 RKLS--------TVSLHNKYSNPYGNGYALPHAILRLDLAGRDLT----DYLMKI---LT 48
RKL H+ P A ++ DL +++ D ++I T
Sbjct: 412 RKLKFSNRFLPVASPFHSHLLVP-----ASD--LINKDLVKNNVSFNAKD--IQIPVYDT 462
Query: 49 ERGYSFTTTAEREIVRDIKEKLCYVALDFEQEMATAA---------ASTSLEK-SYELPD 98
G + I I + + + + +E A ++ L ++ D
Sbjct: 463 FDGSDLRVLSG-SISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 99 G---QVITIG 105
G +VI G
Sbjct: 522 GTGVRVIVAG 531
>1zei_A Insulin, B28Asp-X-MCR; hormone, metabolic role, chemical
activity, insulin mutant, cross-LINK, glucose
metabolism, diabetes; 1.90A {Sus scrofa} SCOP: g.1.1.1
PDB: 6ins_E 1sju_A 2jzq_A
Length = 53
Score = 28.7 bits (64), Expect = 0.26
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 34 LAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCY 72
L G L + L + ERG+ +T A + IV E+ C
Sbjct: 6 LCGSHLVEALYLVCGERGFFYTDKAAKGIV----EQCCT 40
>1tgr_A Insulin-like growth factor IA; IGF-I, IGF-1, disulfide
isomerization, recepter binding, HOR growth factor
complex; 1.42A {Homo sapiens} SCOP: g.1.1.1
Length = 52
Score = 26.4 bits (58), Expect = 1.4
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 34 LAGRDLTDYLMKILTERGYSFTTTAEREIV 63
L G +L D L + +RG+ F + IV
Sbjct: 5 LCGAELVDALQFVCGDRGFYFNKPKAKGIV 34
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 26.9 bits (60), Expect = 2.5
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 90 LEKSYELPDGQVITIGNERFR 110
+E L QV+ +G F
Sbjct: 78 IEHQSTLSANQVVALGTTLFL 98
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 27.1 bits (60), Expect = 2.7
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 90 LEKSYELPDGQVITIGNERFR 110
+++ L G VITI + FR
Sbjct: 84 IDEPVRLKHGDVITIIDRSFR 104
>2y8u_A Chitin deacetylase; hydrolase; 1.99A {Emericella nidulans}
Length = 230
Score = 26.9 bits (60), Expect = 4.8
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 39 LTDYLMKILTERGYSFTTTAE 59
L + +++ + RG TT +
Sbjct: 199 LAERMLQEVNARGLIATTVGD 219
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.9 bits (59), Expect = 4.8
Identities = 8/51 (15%), Positives = 12/51 (23%), Gaps = 19/51 (37%)
Query: 81 MATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHET 131
M T + P+ N CPE C ++
Sbjct: 1 MMTRESIDKRAGRRG-PNL------NIVLTCPE------------CKVYPP 32
>2fia_A Acetyltransferase; structural genomics, PSI, protein structu
initiative, midwest center for structural genomics,
MCSG; 2.60A {Enterococcus faecalis} SCOP: d.108.1.1
Length = 162
Score = 26.7 bits (59), Expect = 5.0
Identities = 8/36 (22%), Positives = 16/36 (44%)
Query: 59 EREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSY 94
+ +I DI +K Y+ + E + A E+ +
Sbjct: 40 QGDIQEDITKKRLYLLVHEEMIFSMATFCMEQEQDF 75
>2iw0_A Chitin deacetylase; hydrolase, chitin DE-N-acetylase, family 4
carbohydrate ESTE; 1.81A {Colletotrichum lindemuthianum}
SCOP: c.6.2.3
Length = 254
Score = 26.6 bits (59), Expect = 6.8
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 39 LTDYLMKILTERGYSFTTTAE 59
LT L+ L +GY T E
Sbjct: 216 LTQKLIDTLKSKGYRAVTVGE 236
>2oh1_A Acetyltransferase, GNAT family; YP_013287.1, structural genom
joint center for structural genomics, JCSG, protein
structu initiative; HET: MSE UNL; 1.46A {Listeria
monocytogenes str}
Length = 179
Score = 26.4 bits (58), Expect = 7.1
Identities = 4/36 (11%), Positives = 10/36 (27%)
Query: 60 REIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYE 95
I + I+ + +A A ++
Sbjct: 56 HNIEQRIELGEVALFETEAGALAGAMIIRKTPSDWD 91
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,545,327
Number of extensions: 214274
Number of successful extensions: 500
Number of sequences better than 10.0: 1
Number of HSP's gapped: 484
Number of HSP's successfully gapped: 27
Length of query: 229
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 139
Effective length of database: 4,188,903
Effective search space: 582257517
Effective search space used: 582257517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.6 bits)