RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2717
(229 letters)
>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
Length = 225
Score = 305 bits (783), Expect = e-107
Identities = 189/208 (90%), Positives = 198/208 (95%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P GYALPHAI+RLDLAGRDLTDYLMKILTERGYSF TTAEREIVRDIKEKLCYVALDF
Sbjct: 18 PIYEGYALPHAIMRLDLAGRDLTDYLMKILTERGYSFVTTAEREIVRDIKEKLCYVALDF 77
Query: 78 EQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIM 137
E EMATAA+S+SLEKSYELPDGQVITIGNERFRCPE LFQPSF+GMES GIHET YNSIM
Sbjct: 78 ENEMATAASSSSLEKSYELPDGQVITIGNERFRCPETLFQPSFIGMESAGIHETTYNSIM 137
Query: 138 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGG 197
KCD+DIRKDLYAN V+SGGTTMYPGIADRMQKEITALAPST+KIKIIAPPERKYSVWIGG
Sbjct: 138 KCDIDIRKDLYANNVMSGGTTMYPGIADRMQKEITALAPSTMKIKIIAPPERKYSVWIGG 197
Query: 198 SILASLSTFQQMWISKQEYDESGPGIVH 225
SILASLSTFQQMWI+KQEYDE+GP IVH
Sbjct: 198 SILASLSTFQQMWITKQEYDEAGPSIVH 225
>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 258
Score = 282 bits (723), Expect = 2e-97
Identities = 73/236 (30%), Positives = 109/236 (46%), Gaps = 24/236 (10%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P GY + I + +AGRD+T ++ ++L +R E + +KE+ YV D
Sbjct: 19 PVAEGYVIGSCIKHIPIAGRDITYFIQQLLRDREVGIPPEQSLETAKAVKERYSYVCPDL 78
Query: 78 EQEMATAAASTS-LEKSYEL-----PDGQVITIGNERFRCPEALFQPSFLGMESC-GIHE 130
+E S K Y I +G ERF PE F P F + I E
Sbjct: 79 VKEFNKYDTDGSKWIKQYTGINAISKKEFSIDVGYERFLGPEIFFHPEFANPDFTQPISE 138
Query: 131 TVYNSIMKCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEIT----------------AL 174
V I C +D+R+ LY N VLSGG+TM+ R+Q+++ L
Sbjct: 139 VVDEVIQNCPIDVRRPLYKNIVLSGGSTMFRDFGRRLQRDLKRTVDARLKLSEELSGGRL 198
Query: 175 APSTIKIKIIAPPERKYSVWIGGSILASLSTFQQMWISKQEYDESGPGIV-HRKCF 229
P I +++I ++Y+VW GGS+LAS F Q+ +K++Y+E GP I H F
Sbjct: 199 KPKPIDVQVITHHMQRYAVWFGGSMLASTPEFYQVCHTKKDYEEIGPSICRHNPVF 254
>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 190
Score = 218 bits (556), Expect = 4e-73
Identities = 79/168 (47%), Positives = 111/168 (66%)
Query: 18 PYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDF 77
P G++LPH RLD+AGRD+T YL+K+L RGY+F +A+ E VR IKEKLCYV +
Sbjct: 15 PVYEGFSLPHLTRRLDIAGRDITRYLIKLLLLRGYAFNHSADFETVRMIKEKLCYVGYNI 74
Query: 78 EQEMATAAASTSLEKSYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIM 137
EQE A +T L +SY LPDG++I +G ERF PEALFQP + +E G+ E ++N+I
Sbjct: 75 EQEQKLALETTVLVESYTLPDGRIIKVGGERFEAPEALFQPHLINVEGVGVAELLFNTIQ 134
Query: 138 KCDVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIA 185
D+D R + Y + VLSGG+TMYPG+ R+++E+ L + +
Sbjct: 135 AADIDTRSEFYKHIVLSGGSTMYPGLPSRLERELKQLYLERVLKGDVE 182
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 28.5 bits (63), Expect = 0.27
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 72 YVALDFEQEMATAAASTSLEKSYELPDGQVITIGNERFR 110
+ +F T + +++ L G VITI + FR
Sbjct: 56 AILHNFSSTNPTQVNGSVIDEPVRLKHGDVITIIDRSFR 94
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 27.3 bits (60), Expect = 0.64
Identities = 6/21 (28%), Positives = 9/21 (42%)
Query: 90 LEKSYELPDGQVITIGNERFR 110
+ + L DG I I + F
Sbjct: 74 IRSAVTLNDGDHIRICDHEFT 94
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 27.6 bits (60), Expect = 0.98
Identities = 16/74 (21%), Positives = 30/74 (40%), Gaps = 1/74 (1%)
Query: 99 GQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYAN-TVLSGGT 157
G ++ G R + L I E+V ++ K ++ D+ L+GG
Sbjct: 88 GIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGG 147
Query: 158 TMYPGIADRMQKEI 171
++ G+ +QKE
Sbjct: 148 SLLRGLDTLLQKET 161
>d2iw0a1 c.6.2.3 (A:29-248) Chitin deacetylase {Bean anthracnose
fungus (Colletotrichum lindemuthianum) [TaxId: 290576]}
Length = 220
Score = 26.0 bits (56), Expect = 3.2
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 38 DLTDYLMKILTERGYSFTTTAE 59
LT L+ L +GY T E
Sbjct: 187 SLTQKLIDTLKSKGYRAVTVGE 208
>d3ehbb1 b.6.1.2 (B:108-252) Cytochrome c oxidase {Paracoccus
denitrificans [TaxId: 266]}
Length = 145
Score = 25.8 bits (56), Expect = 3.2
Identities = 7/39 (17%), Positives = 16/39 (41%)
Query: 157 TTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWI 195
+ G+ E+ + + + I + A + KY W+
Sbjct: 98 SVDQEGVYFGQCSELCGINHAYMPIVVKAVSQEKYEAWL 136
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 24.8 bits (53), Expect = 5.0
Identities = 4/19 (21%), Positives = 7/19 (36%)
Query: 92 KSYELPDGQVITIGNERFR 110
K L + I + R +
Sbjct: 88 KRRPLNNNSEIALSLSRNK 106
>d2c71a1 c.6.2.3 (A:480-683) Xylanase XynA C-terminal domain
{Clostridium thermocellum [TaxId: 1515]}
Length = 204
Score = 25.2 bits (54), Expect = 6.5
Identities = 13/53 (24%), Positives = 17/53 (32%), Gaps = 15/53 (28%)
Query: 7 STVSLHNKYSNPYGNGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAE 59
+ + LH+ P+ AL I L RGY F T E
Sbjct: 146 TIILLHDVQPEPHPTPEALDIII---------------PTLKSRGYEFVTLTE 183
>d1jeta_ c.94.1.1 (A:) Oligo-peptide binding protein (OPPA)
{Salmonella typhimurium [TaxId: 90371]}
Length = 517
Score = 25.4 bits (54), Expect = 7.6
Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)
Query: 55 TTTAEREIVRDIKEKLCYVALDFEQEMATAAASTSLEKSYELPDGQVITI 104
E + RD+ E L + D E + A + +E D +V T
Sbjct: 32 EGVPESNVSRDLFEGL--LISDVEGHPSPGVA-----EKWENKDFKVWTF 74
>d1v54b1 b.6.1.2 (B:91-227) Cytochrome c oxidase {Cow (Bos taurus)
[TaxId: 9913]}
Length = 137
Score = 24.7 bits (53), Expect = 7.8
Identities = 19/124 (15%), Positives = 37/124 (29%), Gaps = 28/124 (22%)
Query: 93 SYELPDGQVITIGNERFRCPEALFQPSFLGMESCGIHETVYNSIMKCDVDIRKDLYANTV 152
SYE D + ++ + + S L + E ++ ++ IR + + V
Sbjct: 17 SYEYTDYEDLSFDS-------YMIPTSELKPGELRLLEVDNRVVLPMEMTIRMLVSSEDV 69
Query: 153 LSGGT---------------------TMYPGIADRMQKEITALAPSTIKIKIIAPPERKY 191
L + PG+ EI S + I + P + +
Sbjct: 70 LHSWAVPSLGLKTDAIPGRLNQTTLMSSRPGLYYGQCSEICGSNHSFMPIVLELVPLKYF 129
Query: 192 SVWI 195
W
Sbjct: 130 EKWS 133
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 24.6 bits (53), Expect = 9.1
Identities = 17/64 (26%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 140 DVDIRKDLYANTVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSI 199
D + K + VL GG+T P I +Q + K I P E +V G ++
Sbjct: 135 DAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELN----KSINPDE---AVAYGAAV 187
Query: 200 LASL 203
A++
Sbjct: 188 QAAI 191
>d1n62c2 d.145.1.3 (C:1-177) Carbon monoxide (CO) dehydrogenase
flavoprotein, N-terminal domain {Oligotropha
carboxidovorans, formerly Pseudomonas carboxydovorans
[TaxId: 40137]}
Length = 177
Score = 24.8 bits (53), Expect = 9.2
Identities = 11/82 (13%), Positives = 21/82 (25%), Gaps = 3/82 (3%)
Query: 151 TVLSGGTTMYPGIADRMQKEITALAPSTIKIKIIAPPERKYSVWIGGSILASL---STFQ 207
L+GG ++ P + R+ + I + E V + +L
Sbjct: 29 RPLAGGHSLIPIMKTRLATPEHLVDLRDIGDLVGIREEGTDVVIGAMTTQHALIGSDFLA 88
Query: 208 QMWISKQEYDESGPGIVHRKCF 229
+E R
Sbjct: 89 AKLPIIRETSLLIADPQIRYMG 110
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.395
Gapped
Lambda K H
0.267 0.0516 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 862,369
Number of extensions: 40234
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 105
Number of HSP's successfully gapped: 17
Length of query: 229
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 147
Effective length of database: 1,281,736
Effective search space: 188415192
Effective search space used: 188415192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.9 bits)