RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2719
(808 letters)
>gnl|CDD|184712 PRK14501, PRK14501, putative bifunctional trehalose-6-phosphate
synthase/HAD hydrolase subfamily IIB; Provisional.
Length = 726
Score = 497 bits (1282), Expect = e-166
Identities = 234/742 (31%), Positives = 349/742 (47%), Gaps = 136/742 (18%)
Query: 109 GIWIGWSGL-YDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNGTF 167
G+W+GW GL + +E A + GL +PV + +E + YY G CN T
Sbjct: 43 GLWVGWPGLDLEEESEEQ--RARIEPRLEELGL-----VPVFLSAEEVDRYYEGFCNSTL 95
Query: 168 WPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVWIHDY 227
WPLFH P+ F W++Y +VN+ FA A+ + + D VVW+HDY
Sbjct: 96 WPLFHYFPEYTEFEDRFWESYERVNQRFAE----AIAAIARPGD---------VVWVHDY 142
Query: 228 QLLVAATTIRQ------VAY----------------------------DFVGFHIEDYCL 253
QL++ +R+ + + D +GFH DY
Sbjct: 143 QLMLLPAMLRERLPDARIGFFLHIPFPSFEVFRLLPWREEILEGLLGADLIGFHTYDYVR 202
Query: 254 NFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAP---------E 304
+F+ R LG + + L GR V V A P+GI +++F A++ +
Sbjct: 203 HFLSSVLRVLGYETELGE--IRLGGRIVRVDAFPMGIDYDKFHNSAQDPEVQEEIRRLRQ 260
Query: 305 NLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYK 364
+L+ K+IL +DRLDYTKG+ R+ AFER LEK+PE+ KV +Q++VPSRT V +Y+
Sbjct: 261 DLRG--RKIILSIDRLDYTKGIPRRLLAFERFLEKNPEWRGKVRLVQVAVPSRTGVPQYQ 318
Query: 365 ALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVA 424
+K E+D+LVGRING F +W+PI Y + + EEL ALYR + +ALVTPLRDGMNLVA
Sbjct: 319 EMKREIDELVGRINGEFGTVDWTPIHYFYRSLPFEELVALYRAADVALVTPLRDGMNLVA 378
Query: 425 KEYVACQIREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELRMS 484
KEYVA + GVLILS AGA + EALLVNP +I+ A + RAL MP +E+ RM
Sbjct: 379 KEYVASRTDGDGVLILSEMAGAAAELAEALLVNPNDIEGIAAAIKRALEMPEEEQRERMQ 438
Query: 485 QLRHREQQLDVNHWMNSFLSSMGALDNDDD---SDPLSAKTLQLTLDDFDLYLNNYVDGN 541
++ R ++ DV+ W + FL + + S P++ + + +
Sbjct: 439 AMQERLRRYDVHKWASDFLDELREAAEKNKAFASKPITPAAAEEIIARY--------RAA 490
Query: 542 CKLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPD 601
+ L+LDYDGTL P P+LAV +E + +L RLA P+ ++ IISGR + L
Sbjct: 491 SRRLLLLDYDGTLVPFAPDPELAVPDKELRDLLRRLAADPNTDVAIISGRDRDTLE---- 546
Query: 602 LAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGT- 660
++P + HG P G
Sbjct: 547 ------------RWFGDLP-----------------------IHLVAEHGAWSRAPGGEW 571
Query: 661 KFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIE----RREYIID 716
+ + PV E+ + +R +++ D G++IE K L +HYR E R +I
Sbjct: 572 QLLEPVATEWKDAVRPILEEFVD--RTPGSFIEEKEASLAWHYRNADPELGEARANELIL 629
Query: 717 RASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGN--- 773
S + A E +E +P ++GRA +L + ++ G+
Sbjct: 630 ALSSLLSNAPLEVLRGNKVVEVRPAG-VNKGRAVRRLL------EAGPYDFVLAIGDDTT 682
Query: 774 -EDAMLALQGIACTFRVDSSPT 794
ED AL A T +V +
Sbjct: 683 DEDMFRALPETAITVKVGPGES 704
Score = 90.4 bits (225), Expect = 2e-18
Identities = 31/96 (32%), Positives = 43/96 (44%), Gaps = 8/96 (8%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGL-YDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVD 59
GGL T + G+W+GW GL + +E A + GL +PV +
Sbjct: 27 VGGLATGLRSFHERGGGLWVGWPGLDLEEESEEQ--RARIEPRLEELGL-----VPVFLS 79
Query: 60 KDEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWKV 95
+E + YY G CN T WPLFH P+ F W+
Sbjct: 80 AEEVDRYYEGFCNSTLWPLFHYFPEYTEFEDRFWES 115
>gnl|CDD|99963 cd03788, GT1_TPS, Trehalose-6-Phosphate Synthase (TPS) is a
glycosyltransferase that catalyses the synthesis of
alpha,alpha-1,1-trehalose-6-phosphate from
glucose-6-phosphate using a UDP-glucose donor. It is a
key enzyme in the trehalose synthesis pathway. Trehalose
is a nonreducing disaccharide present in a wide variety
of organisms and may serve as a source of energy and
carbon. It is characterized most notably in insect,
plant, and microbial cells. Its production is often
associated with a variety of stress conditions,
including desiccation, dehydration, heat, cold, and
oxidation. This family represents the catalytic domain
of the TPS. Some members of this domain family coexist
with a C-terminal trehalose phosphatase domain.
Length = 460
Score = 485 bits (1251), Expect = e-165
Identities = 190/439 (43%), Positives = 254/439 (57%), Gaps = 63/439 (14%)
Query: 109 GIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNGTFW 168
G+W+GWSG + + + D+ T L V PV + +EFE YYNG N W
Sbjct: 43 GLWVGWSG--------IEEDEEEEDEVSTELLGEYTVAPVFLSPEEFEGYYNGFSNEVLW 94
Query: 169 PLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVWIHDYQ 228
PLFH D A F+ E W+ Y +VN +FA+ A+ V++ D +VW+HDY
Sbjct: 95 PLFHYRLDLARFDREDWEAYVRVNRKFAD----AIAEVLRPGD---------LVWVHDYH 141
Query: 229 LLVAATTIRQ----------------------------------VAYDFVGFHIEDYCLN 254
LL+ +R+ + D +GF E Y N
Sbjct: 142 LLLLPQMLRERGPDARIGFFLHIPFPSSEIFRCLPWREELLRGLLGADLIGFQTERYARN 201
Query: 255 FIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAP-----ENLKD- 308
F+ CC R LG V + VE GR V V A PIGI + F +LA + L++
Sbjct: 202 FLSCCSRLLGLEVTDDG-GVEYGGRRVRVGAFPIGIDPDAFRKLAASPEVQERAAELRER 260
Query: 309 -ENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALK 367
K+I+GVDRLDY+KG+ R+ AFERLLE++PE+ KV +QI+VPSRTDV EY+ L+
Sbjct: 261 LGGRKLIVGVDRLDYSKGIPERLLAFERLLERYPEWRGKVVLVQIAVPSRTDVPEYQELR 320
Query: 368 DEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEY 427
E+++LVGRING+F +W+P+RY++ + +EELAALYR + +ALVTPLRDGMNLVAKEY
Sbjct: 321 REVEELVGRINGKFGTLDWTPVRYLYRSLPREELAALYRAADVALVTPLRDGMNLVAKEY 380
Query: 428 VACQIREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLR 487
VACQ +PGVLILS FAGA + ALLVNPY+ID A+ +HRAL MP +ER R +LR
Sbjct: 381 VACQDDDPGVLILSEFAGAAEELSGALLVNPYDIDEVADAIHRALTMPLEERRERHRKLR 440
Query: 488 HREQQLDVNHWMNSFLSSM 506
+ DV W NSFL +
Sbjct: 441 EYVRTHDVQAWANSFLDDL 459
Score = 101 bits (255), Expect = 1e-22
Identities = 36/94 (38%), Positives = 49/94 (52%), Gaps = 8/94 (8%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGL TA+ ++ G+W+GWSG + + + D+ T L V PV +
Sbjct: 27 AGGLATALKGLLKRTGGLWVGWSG--------IEEDEEEEDEVSTELLGEYTVAPVFLSP 78
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWK 94
+EFE YYNG N WPLFH D A F+ E W+
Sbjct: 79 EEFEGYYNGFSNEVLWPLFHYRLDLARFDREDWE 112
>gnl|CDD|233848 TIGR02400, trehalose_OtsA, alpha,alpha-trehalose-phosphate synthase
[UDP-forming]. This enzyme catalyzes the key,
penultimate step in biosynthesis of trehalose, a
compatible solute made as an osmoprotectant in some
species in all three domains of life. The gene symbol
OtsA stands for osmotically regulated trehalose
synthesis A. Trehalose helps protect against both
osmotic and thermal stresses, and is made from two
glucose subunits. This model excludes
glucosylglycerol-phosphate synthase, an enzyme of an
analogous osmoprotectant system in many cyanobacterial
strains. This model does not identify archaeal examples,
as they are more divergent than
glucosylglycerol-phosphate synthase. Sequences that
score in the gray zone between the trusted and noise
cutoffs include a number of yeast multidomain proteins
in which the N-terminal domain may be functionally
equivalent to this family. The gray zone also includes
the OtsA of Cornyebacterium glutamicum (and related
species), shown to be responsible for synthesis of only
trace amounts of trehalose while the majority is
synthesized by the TreYZ pathway; the significance of
OtsA in this species is unclear (see Wolf, et al.,
PMID:12890033) [Cellular processes, Adaptations to
atypical conditions].
Length = 456
Score = 437 bits (1126), Expect = e-146
Identities = 177/448 (39%), Positives = 242/448 (54%), Gaps = 63/448 (14%)
Query: 100 MNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYY 159
+ G G+W GWSG + + E + T + PV + +++ + YY
Sbjct: 29 LLGALKATGGVWFGWSG-------KTVEEDEGEPFLRTELEGKITLAPVFLSEEDVDGYY 81
Query: 160 NGCCNGTFWPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVV 219
NG N T WPLFH PD ++ + W+ Y +VN FA AL +++ D
Sbjct: 82 NGFSNSTLWPLFHYRPDLIRYDRKAWEAYRRVNRLFAE----ALAPLLQPGD-------- 129
Query: 220 PVVWIHDYQLLVAATTIRQ----------------------------------VAYDFVG 245
+VW+HDY L++ +R+ +AYD VG
Sbjct: 130 -IVWVHDYHLMLLPAMLRELGVQNKIGFFLHIPFPSSEIYRTLPWRRELLEGLLAYDLVG 188
Query: 246 FHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENA--- 302
F D NF+ R LG N + GRTV V A PIGI +RF + A+
Sbjct: 189 FQTYDDARNFLSAVSRELGLETLPNGVES--GGRTVRVGAFPIGIDVDRFAEQAKKPSVQ 246
Query: 303 --PENLKDE--NLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRT 358
L++ K+I+GVDRLDY+KGL R+ AFER LE+HPE+ KV +QI+VPSR
Sbjct: 247 KRIAELRESLKGRKLIIGVDRLDYSKGLPERLLAFERFLEEHPEWRGKVVLVQIAVPSRG 306
Query: 359 DVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRD 418
DV EY+ L+ ++++LVGRINGRF +W+PIRY+ +EEL ALYR + + LVTPLRD
Sbjct: 307 DVPEYQQLRRQVEELVGRINGRFGTLDWTPIRYLNRSYDREELMALYRAADVGLVTPLRD 366
Query: 419 GMNLVAKEYVACQIREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDE 478
GMNLVAKEYVA Q + GVLILS FAGA ++ ALLVNPY+ID A+ + RAL MP +E
Sbjct: 367 GMNLVAKEYVAAQDPKDGVLILSEFAGAAQELNGALLVNPYDIDGMADAIARALTMPLEE 426
Query: 479 RELRMSQLRHREQQLDVNHWMNSFLSSM 506
RE R + + ++ DV W FLS +
Sbjct: 427 REERHRAMMDKLRKNDVQRWREDFLSDL 454
Score = 86.2 bits (214), Expect = 1e-17
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 7/94 (7%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGL A+ + G+W GWSG + + E + T + PV + +
Sbjct: 22 AGGLAVALLGALKATGGVWFGWSG-------KTVEEDEGEPFLRTELEGKITLAPVFLSE 74
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWK 94
++ + YYNG N T WPLFH PD ++ + W+
Sbjct: 75 EDVDGYYNGFSNSTLWPLFHYRPDLIRYDRKAWE 108
>gnl|CDD|223457 COG0380, OtsA, Trehalose-6-phosphate synthase [Carbohydrate
transport and metabolism].
Length = 486
Score = 393 bits (1012), Expect = e-129
Identities = 168/451 (37%), Positives = 232/451 (51%), Gaps = 63/451 (13%)
Query: 97 HLKMNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFE 156
+ + G WIGWSG E+ + + TS+ VI + +++E
Sbjct: 47 VTALKPLLRVDGGTWIGWSGTTG-----PTDESSDDLKERIGEFTSAPVI---LSDEDYE 98
Query: 157 AYYNGCCNGTFWPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKT 216
YYNG N WPLFH D + W Y KVN +FA + + + + D
Sbjct: 99 GYYNGFSNAILWPLFHYFIDDVAYERNWWDAYVKVNRKFA----DKIVEIYEPGD----- 149
Query: 217 NVVPVVWIHDYQLLVAATTIRQ----------------------------------VAYD 242
++W+HDY LL+ +R+ + D
Sbjct: 150 ----IIWVHDYHLLLVPQMLRERIPDAKIGFFLHIPFPSSEVFRCLPWREEILEGLLGAD 205
Query: 243 FVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENA 302
+GF E Y NF+D C R LG D + GR V V A PIGI E F + ++
Sbjct: 206 LIGFQTESYARNFLDLCSRLLGVTGDADIRFNGADGRIVKVGAFPIGIDPEEFERALKSP 265
Query: 303 PENLK--------DENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISV 354
K N K+I+GVDRLDY+KG+ R+ AFERLLE++PE+ KV LQI+
Sbjct: 266 SVQEKVLELKAELGRNKKLIVGVDRLDYSKGIPQRLLAFERLLEEYPEWRGKVVLLQIAP 325
Query: 355 PSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVT 414
PSR DV EY+AL+ ++++LVGRING F +W+P+ Y+ + + EL ALYR + + LVT
Sbjct: 326 PSREDVEEYQALRLQIEELVGRINGEFGSLSWTPVHYLHRDLDRNELLALYRAADVMLVT 385
Query: 415 PLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCM 474
PLRDGMNLVAKEYVA Q +PGVLILS FAGA + +AL+VNP++ A+ + RAL M
Sbjct: 386 PLRDGMNLVAKEYVAAQRDKPGVLILSEFAGAASELRDALIVNPWDTKEVADAIKRALTM 445
Query: 475 PRDERELRMSQLRHREQQLDVNHWMNSFLSS 505
+ER+ R +L + DV W NSFL
Sbjct: 446 SLEERKERHEKLLKQVLTHDVARWANSFLDD 476
Score = 78.9 bits (195), Expect = 3e-15
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 8/94 (8%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGLVTA+ P++ G WIGWSG E+ + + TS+ VI +
Sbjct: 43 AGGLVTALKPLLRVDGGTWIGWSGTTG-----PTDESSDDLKERIGEFTSAPVI---LSD 94
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWK 94
+++E YYNG N WPLFH D + W
Sbjct: 95 EDYEGYYNGFSNAILWPLFHYFIDDVAYERNWWD 128
>gnl|CDD|216227 pfam00982, Glyco_transf_20, Glycosyltransferase family 20. Members
of this family belong to glycosyl transferase family 20.
OtsA (Trehalose-6-phosphate synthase) is homologous to
regions in the subunits of yeast trehalose-6-phosphate
synthase/phosphate complex.
Length = 470
Score = 383 bits (987), Expect = e-125
Identities = 164/452 (36%), Positives = 237/452 (52%), Gaps = 67/452 (14%)
Query: 100 MNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYY 159
+NG++ G+W+GW G+ + E +P D+ +PV +D ++ + YY
Sbjct: 37 LNGLSEATEGVWVGWPGVP-------VDEDEPKDRVSQLLKEKFTCVPVFLDDEDVDEYY 89
Query: 160 NGCCNGTFWPLFHSMPDRAV---FNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKT 216
NG N WPLFH F+ W Y KVN+ FA+ + V KD D
Sbjct: 90 NGFSNSILWPLFHYRLPPNNEDEFDRSWWDAYVKVNKLFAD----KIVEVYKDGD----- 140
Query: 217 NVVPVVWIHDYQLLVAATTIRQ----------------------------------VAYD 242
++W+HDY L++ +R+ + D
Sbjct: 141 ----LIWVHDYHLMLLPQMLRKRLPDAKIGFFLHIPFPSSEIFRCLPVREEILRGLLGAD 196
Query: 243 FVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENA 302
+GFH DY +F+ CC R LG ++ VE GRTV V A PIGI R ++
Sbjct: 197 LIGFHTYDYARHFLSCCSRLLGLET-TSDGGVEYGGRTVSVGAFPIGIDPGRIESGLKSP 255
Query: 303 PENLKDENL--------KVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISV 354
K + L K+ILGVDRLDY KG+ ++ AFER LE++PE+ KV +QI+V
Sbjct: 256 SVQEKVKELKERFGNKKKLILGVDRLDYIKGIPQKLLAFERFLEEYPEWRGKVVLVQIAV 315
Query: 355 PSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVT 414
PSR DV EY+ L+ ++++LVGRING F +++P+ ++ + +EL ALY + + LVT
Sbjct: 316 PSRGDVEEYQNLRSQVEELVGRINGEFGTLDYTPVHHLHRSLDFDELIALYAIADVCLVT 375
Query: 415 PLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHE-ALLVNPYEIDAAANVLHRALC 473
LRDGMNLVA EYVACQ GVLILS FAGA +++ A+LVNP++I+ A ++ AL
Sbjct: 376 SLRDGMNLVAYEYVACQQDRKGVLILSEFAGAAQSLNDGAILVNPWDIEEVAEAINEALT 435
Query: 474 MPRDERELRMSQLRHREQQLDVNHWMNSFLSS 505
M +ER+ R +L + DV +W SFLS
Sbjct: 436 MSEEERQKRHRKLFKYISKHDVQYWAESFLSD 467
Score = 65.0 bits (159), Expect = 6e-11
Identities = 26/85 (30%), Positives = 42/85 (49%), Gaps = 7/85 (8%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
+GGLV+A+ + +G+W+GW G+ + E +P D+ +PV +D
Sbjct: 30 SGGLVSALNGLSEATEGVWVGWPGVP-------VDEDEPKDRVSQLLKEKFTCVPVFLDD 82
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDR 85
++ + YYNG N WPLFH
Sbjct: 83 EDVDEYYNGFSNSILWPLFHYRLPP 107
>gnl|CDD|215556 PLN03064, PLN03064, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 934
Score = 288 bits (738), Expect = 2e-84
Identities = 202/612 (33%), Positives = 282/612 (46%), Gaps = 125/612 (20%)
Query: 106 EITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNG 165
E WIGW+G+ PDEV +A T L + IPV +D++ YYNG CN
Sbjct: 133 EFEARWIGWAGVN--VPDEV------GQKALTKALAEKRCIPVFLDEEIVHQYYNGYCNN 184
Query: 166 TFWPLFHSMP----DRAVFNAET------WKTYCKVNEEFANCTLNALRNVIKDLDAAGK 215
WPLFH + DR A T + Y K N+ FA+ G
Sbjct: 185 ILWPLFHYLGLPQEDRL---ATTRSFQSQFAAYKKANQMFADVVNEHYEE--------GD 233
Query: 216 TNVVPVVWIHDYQLLVAATTIRQ----------------------------------VAY 241
VVW HDY L+ +++ +A
Sbjct: 234 -----VVWCHDYHLMFLPKCLKEYNSNMKVGWFLHTPFPSSEIHRTLPSRSELLRSVLAA 288
Query: 242 DFVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAE- 300
D VGFH DY +F+ C R LG ++ VE GR V A PIGI +RF++ E
Sbjct: 289 DLVGFHTYDYARHFVSACTRILG--LEGTPEGVEDQGRLTRVAAFPIGIDSDRFIRALET 346
Query: 301 -NAPENLKD-----ENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISV 354
+++K+ KV+LGVDRLD KG+ +I AFE+ LE++PE+ +KV LQI+V
Sbjct: 347 PQVQQHIKELKERFAGRKVMLGVDRLDMIKGIPQKILAFEKFLEENPEWRDKVVLLQIAV 406
Query: 355 PSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVT 414
P+RTDV EY+ L ++ ++VGRINGRF PI ++ + L ALY + +ALVT
Sbjct: 407 PTRTDVPEYQKLTSQVHEIVGRINGRFGTLTAVPIHHLDRSLDFHALCALYAVTDVALVT 466
Query: 415 PLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHE-ALLVNPYEIDAAANVLHRALC 473
LRDGMNLV+ E+VACQ + GVLILS FAGA + A+LVNP+ I A + +AL
Sbjct: 467 SLRDGMNLVSYEFVACQDSKKGVLILSEFAGAAQSLGAGAILVNPWNITEVAASIAQALN 526
Query: 474 MPRDERELRMSQLRHREQQLDV-NH----WMNSFLSSMGALDNDDDSDP-LSAKTLQLTL 527
MP +ERE RHR + V H W +F+S + ND + L + + L
Sbjct: 527 MPEEERE-----KRHRHNFMHVTTHTAQEWAETFVSEL----NDTVVEAQLRTRQVPPQL 577
Query: 528 DDFDLYLNNYVDGNCKLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGI 587
D + Y+ N +L LIL ++ TLT P R +++ M
Sbjct: 578 PPEDA-IQRYLQSNNRL-LILGFNATLTEPVDTP---------GRRGDQIKEM------- 619
Query: 588 ISGRTLENLRHHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYA 647
LR HP+L K L L + P I ++SG L + + A
Sbjct: 620 -------ELRLHPEL-------KEPLRALCSDPKTTIVVLSGSDRSVLDENFGEFDMWLA 665
Query: 648 GSHGLEILHPDG 659
+G+ + H G
Sbjct: 666 AENGMFLRHTKG 677
Score = 70.6 bits (173), Expect = 2e-12
Identities = 34/83 (40%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGLV+A+ V + + WIGW+G+ PDEV +A T L + IPV +D+
Sbjct: 121 AGGLVSALLGVK-EFEARWIGWAGVN--VPDEV------GQKALTKALAEKRCIPVFLDE 171
Query: 61 DEFEAYYNGCCNGTFWPLFHSMP 83
+ YYNG CN WPLFH +
Sbjct: 172 EIVHQYYNGYCNNILWPLFHYLG 194
>gnl|CDD|182249 PRK10117, PRK10117, trehalose-6-phosphate synthase; Provisional.
Length = 474
Score = 264 bits (677), Expect = 8e-80
Identities = 148/441 (33%), Positives = 220/441 (49%), Gaps = 69/441 (15%)
Query: 109 GIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNGTFW 168
G+W GWSG E E P + +T + ++ + +++ YYN N W
Sbjct: 37 GLWFGWSG-------ETGNEDQPLKKVKKGNITWASF---NLSEQDYDEYYNQFSNAVLW 86
Query: 169 PLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVWIHDYQ 228
P FH D F W+ Y +VN A+ L ++KD D ++WIHDY
Sbjct: 87 PAFHYRLDLVQFQRPAWEGYLRVNALLAD----KLLPLLKDDD---------IIWIHDYH 133
Query: 229 LLVAATTIRQVA----------------------------------YDFVGFHIEDYCLN 254
LL A+ +R+ YD +GF E+ L
Sbjct: 134 LLPFASELRKRGVNNRIGFFLHIPFPTPEIFNALPPHDELLEQLCDYDLLGFQTENDRLA 193
Query: 255 FIDCCCR--RLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENA--PE--NLKD 308
F+DC R+ +R +++ G+ + PIGI + + A P+ LK
Sbjct: 194 FLDCLSNLTRVTTRSGKSH---TAWGKAFRTEVYPIGIEPDEIAKQAAGPLPPKLAQLKA 250
Query: 309 E--NLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKAL 366
E N++ I V+RLDY+KGL R A+E LLEK+P++ K+ + QI+ SR DV Y+ +
Sbjct: 251 ELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGDVQAYQDI 310
Query: 367 KDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKE 426
+ +++ GRING++ + W+P+ Y+ ++ L ++R S + LVTPLRDGMNLVAKE
Sbjct: 311 RHQLETEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDGMNLVAKE 370
Query: 427 YVACQ-IREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELRMSQ 485
YVA Q PGVL+LS FAGA + AL+VNPY+ D A L RAL MP ER R ++
Sbjct: 371 YVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMPLAERISRHAE 430
Query: 486 LRHREQQLDVNHWMNSFLSSM 506
+ + D+NHW F+S +
Sbjct: 431 MLDVIVKNDINHWQECFISDL 451
Score = 45.9 bits (109), Expect = 7e-05
Identities = 25/93 (26%), Positives = 37/93 (39%), Gaps = 10/93 (10%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGL + + G+W GWSG E E P + +T + ++ +
Sbjct: 21 AGGLAVGILGALKAAGGLWFGWSG-------ETGNEDQPLKKVKKGNITWASF---NLSE 70
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETW 93
+++ YYN N WP FH D F W
Sbjct: 71 QDYDEYYNQFSNAVLWPAFHYRLDLVQFQRPAW 103
>gnl|CDD|215555 PLN03063, PLN03063, alpha,alpha-trehalose-phosphate synthase
(UDP-forming); Provisional.
Length = 797
Score = 267 bits (685), Expect = 7e-78
Identities = 182/536 (33%), Positives = 256/536 (47%), Gaps = 89/536 (16%)
Query: 111 WIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNGTFWPL 170
WIGW G+ +V E A T L IPV ++ + F+ YYNG CN WP+
Sbjct: 55 WIGWPGV------DVHDEIGKA--ALTESLAEKGCIPVFLN-EVFDQYYNGYCNNILWPI 105
Query: 171 FHSM----PDR--AVFNAET-WKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVW 223
FH M DR A E+ + Y K N F + V+K+ G VVW
Sbjct: 106 FHYMGLPQEDRHDATRTFESQYDAYKKANRMFLD--------VVKENYEEGD-----VVW 152
Query: 224 IHDYQLLVAATTIRQ----------------------------------VAYDFVGFHIE 249
HDY L+ +++ + D +GFH
Sbjct: 153 CHDYHLMFLPQYLKEYNNKMKVGWFLHTPFPSSEIYKTLPSRSELLRAVLTADLIGFHTY 212
Query: 250 DYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDE 309
D+ +F+ C R LG V+ + V G+ V PIGI ERF+ E +
Sbjct: 213 DFARHFLSACTRILG--VEGTHEGVVDQGKVTRVAVFPIGIDPERFINTCELPEVKQHMK 270
Query: 310 NL-------KVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLE 362
L KVILGVDRLD KG+ + AFE+ LE++PE+ +KV +QI+VP+R DV E
Sbjct: 271 ELKRFFAGRKVILGVDRLDMIKGIPQKYLAFEKFLEENPEWRDKVMLVQIAVPTRNDVPE 330
Query: 363 YKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNL 422
Y+ LK ++ +LVGRINGRF + PI ++ + L ALY + + LVT LRDGMNL
Sbjct: 331 YQKLKSQVHELVGRINGRFGSVSSVPIHHLDCSVDFNYLCALYAITDVMLVTSLRDGMNL 390
Query: 423 VAKEYVACQIREPGVLILSPFAGAGGMMHE-ALLVNPYEIDAAANVLHRALCMPRDEREL 481
V+ E+VACQ + GVL+LS FAGAG + ALLVNP+ I ++ + AL M +ERE
Sbjct: 391 VSYEFVACQKAKKGVLVLSEFAGAGQSLGAGALLVNPWNITEVSSAIKEALNMSDEERET 450
Query: 482 RMSQLRHREQQL---DVNHWMNSFLSSMGALDNDDDSDPLSAKTLQLTLDDFDLYLNNYV 538
R RH Q + W + F+S L++ L + + L L + D+ + Y
Sbjct: 451 RH---RHNFQYVKTHSAQKWADDFMSE---LNDIIVEAELRTRNIPLELPEQDV-IQQYS 503
Query: 539 DGNCKLSLILDYDGTLTP----LTSHPDLAVMSEETKRVLERLANMPDVNIGIISG 590
N +L LIL + GTLT DL + E K L+ L + P + ++S
Sbjct: 504 KSNNRL-LILGFYGTLTEPRNSQIKEMDLG-LHPELKETLKALCSDPKTTVVVLSR 557
Score = 54.5 bits (131), Expect = 2e-07
Identities = 32/83 (38%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 1 AGGLVTAVAPVVI-DCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVD 59
GGLV+A+ V + K WIGW G+ +V E A T L IPV ++
Sbjct: 38 PGGLVSALLGVKEFETK--WIGWPGV------DVHDEIGKA--ALTESLAEKGCIPVFLN 87
Query: 60 KDEFEAYYNGCCNGTFWPLFHSM 82
+ F+ YYNG CN WP+FH M
Sbjct: 88 -EVFDQYYNGYCNNILWPIFHYM 109
>gnl|CDD|131451 TIGR02398, gluc_glyc_Psyn, glucosylglycerol-phosphate synthase.
Glucosylglycerol-phosphate synthase catalyzes the key
step in the biosynthesis of the osmolyte
glucosylglycerol. It is known in several cyanobacteria
and in Pseudomonas anguilliseptica. The enzyme is
closely related to the alpha,alpha-trehalose-phosphate
synthase, likewise involved in osmolyte biosynthesis, of
E. coli and many other bacteria. A close homolog from
Xanthomonas campestris is excluded from this model and
scores between trusted and noise.
Length = 487
Score = 233 bits (596), Expect = 4e-68
Identities = 137/459 (29%), Positives = 214/459 (46%), Gaps = 85/459 (18%)
Query: 109 GIWIGWSGLYDLAPDEVIPEADPNDQAPTS--GLTSSQVIPVHVDKDEFEAYYNGCCNGT 166
G W+ W+ E + + + + + K++ + +Y+
Sbjct: 42 GTWVAWA--------EHDENSGETFDSHMTVPAEYKLTAARIPLSKEQVDIFYHITSKEA 93
Query: 167 FWPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAA-GKTNVVPVVWIH 225
FWP+ H+ P+R F + W+ + KVN FA +AA G T VW+H
Sbjct: 94 FWPILHTFPERFQFREDDWQVFLKVNRAFAEAACL---------EAAEGAT-----VWVH 139
Query: 226 DYQLLVAATTIRQ------VAY----------------------------DFVGFHIEDY 251
DY L + IRQ +A+ D++GFHI Y
Sbjct: 140 DYNLWLVPGYIRQLRPDLKIAFFHHTPFPSADVFNILPWREQIIGSLLCCDYIGFHIPRY 199
Query: 252 CLNFIDC--------------CCRRL---GSRVDRNNMLVEL--AGRTVHVKALPIGIPF 292
NF+D R G+ + M L R V + A P+G
Sbjct: 200 VENFVDAARGLMPLQTVSRQNVDPRFITVGTALGEERMTTALDTGNRVVKLGAHPVGTDP 259
Query: 293 ERFVQLAENAP-----ENLKDE--NLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVE 345
ER A E ++ E +K+IL +R+DYTKG++ ++ A+ERLLE+ PE +
Sbjct: 260 ERIRSALAAASIREMMERIRSELAGVKLILSAERVDYTKGILEKLNAYERLLERRPELLG 319
Query: 346 KVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALY 405
KVT + VP+ + + Y L+ +++Q VGRINGRF++ W+P+++ + EE++A +
Sbjct: 320 KVTLVTACVPAASGMTIYDELQGQIEQAVGRINGRFARIGWTPLQFFTRSLPYEEVSAWF 379
Query: 406 RDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHEALLVNPYEIDAAA 465
+ + +TPLRDG+NLVAKEYVA Q GVL+LS FAGA + ALL NPY+
Sbjct: 380 AMADVMWITPLRDGLNLVAKEYVAAQGLLDGVLVLSEFAGAAVELKGALLTNPYDPVRMD 439
Query: 466 NVLHRALCMPRDERELRMSQLRHREQQLDVNHWMNSFLS 504
++ AL MP+ E++ RM ++ DV W + FL+
Sbjct: 440 ETIYVALAMPKAEQQARMREMFDAVNYYDVQRWADEFLA 478
Score = 38.0 bits (88), Expect = 0.018
Identities = 15/81 (18%), Positives = 32/81 (39%), Gaps = 10/81 (12%)
Query: 17 GIWIGWSGLYDLAPDEVIPEADPNDQAPTS--GLTSSQVIPVHVDKDEFEAYYNGCCNGT 74
G W+ W+ E + + + + + K++ + +Y+
Sbjct: 42 GTWVAWA--------EHDENSGETFDSHMTVPAEYKLTAARIPLSKEQVDIFYHITSKEA 93
Query: 75 FWPLFHSMPDRAVFNAETWKV 95
FWP+ H+ P+R F + W+V
Sbjct: 94 FWPILHTFPERFQFREDDWQV 114
>gnl|CDD|177855 PLN02205, PLN02205, alpha,alpha-trehalose-phosphate synthase
[UDP-forming].
Length = 854
Score = 199 bits (506), Expect = 3e-53
Identities = 152/509 (29%), Positives = 223/509 (43%), Gaps = 89/509 (17%)
Query: 128 EADPNDQAPTSG--LTSSQVIPVHVDKDEFEAYYNGCCNGTFWPLFHSM----PDRA-VF 180
E N+Q S L + + +P + D F YY+G C WPLFH M PD F
Sbjct: 116 EIHLNEQEEVSQILLETFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRF 175
Query: 181 NAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVWIHDYQLLVAATTIRQ-- 238
N W+ Y VN+ FA+ + VI D VWIHDY L+V T +R+
Sbjct: 176 NRSLWQAYVSVNKIFAD----RIMEVINPED--------DFVWIHDYHLMVLPTFLRKRF 223
Query: 239 --------------------------------VAYDFVGFHIEDYCLNFIDCCCRRLGSR 266
+ D +GFH DY +F+ CC R LG
Sbjct: 224 NRVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLS 283
Query: 267 VD--RNNMLVELAGRTVHVKALPIGI---PFERFVQLAENAP------ENLKDENLKVIL 315
+ R + +E GRTV +K LP+GI + + L E + D++ ++L
Sbjct: 284 YESKRGYIGLEYYGRTVSIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFCDQDRIMLL 343
Query: 316 GVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVG 375
GVD +D KG+ ++ A E+LL +HPE+ KV +QI+ P+R + K ++ E V
Sbjct: 344 GVDDMDIFKGISLKLLAMEQLLMQHPEWQGKVVLVQIANPARGKGKDVKEVQAETHSTVK 403
Query: 376 RINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQ---- 431
RIN F KP + PI I + E A Y + LVT +RDGMNL+ EY+ +
Sbjct: 404 RINETFGKPGYDPIVLIDAPLKFYERVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNE 463
Query: 432 -----------IREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERE 480
+ +L++S F G + A+ VNP+ IDA A+ + AL M E++
Sbjct: 464 KLDKLLGLEPSTPKKSMLVVSEFIGCSPSLSGAIRVNPWNIDAVADAMDSALEMAEPEKQ 523
Query: 481 LRMSQLRHREQQLDVNHWMNSFLSSMGALDNDDDSDP-------LSAKTLQLTLDDFDLY 533
LR + DV +W SFL + D LS + + L + L
Sbjct: 524 LRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFRKLS 583
Query: 534 LNNYVDG---NCKLSLILDYDGTLTPLTS 559
+ + V +++LDYDGTL P S
Sbjct: 584 MEHIVSAYKRTTTRAILLDYDGTLMPQAS 612
Score = 41.2 bits (96), Expect = 0.002
Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 36 EADPNDQAPTSG--LTSSQVIPVHVDKDEFEAYYNGCCNGTFWPLFHSM----PDR-AVF 88
E N+Q S L + + +P + D F YY+G C WPLFH M PD F
Sbjct: 116 EIHLNEQEEVSQILLETFKCVPTFLPPDLFTRYYHGFCKQQLWPLFHYMLPLSPDLGGRF 175
Query: 89 NAETWK 94
N W+
Sbjct: 176 NRSLWQ 181
>gnl|CDD|216992 pfam02358, Trehalose_PPase, Trehalose-phosphatase. This family
consist of trehalose-phosphatases EC:3.1.3.12 these
enzyme catalyze the de-phosphorylation of
trehalose-6-phosphate to trehalose and orthophosphate.
The aligned region is present in trehalose-phosphatases
and comprises the entire length of the protein it is
also found in the C-terminus of trehalose-6-phosphate
synthase EC:2.4.1.15 adjacent to the
trehalose-6-phosphate synthase domain - pfam00982. It
would appear that the two equivalent genes in the E.
coli otsBA operon otsA the trehalose-6-phosphate
synthase and otsB trehalose-phosphatase (this family)
have undergone gene fusion in most eukaryotes. Trehalose
is a common disaccharide of bacteria, fungi and
invertebrates that appears to play a major role in
desiccation tolerance.
Length = 235
Score = 88.5 bits (220), Expect = 1e-19
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 53/241 (21%)
Query: 547 ILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVMS 606
LDYDGTL+P+ PD AV S+ +L RLA+ P + IISGR
Sbjct: 1 FLDYDGTLSPIVEDPDAAVPSDRLLSLLNRLASDPPNTVAIISGR--------------- 45
Query: 607 EETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHPV 666
R E+L + + A HG I P G + +
Sbjct: 46 ----------------------SRAFEDLF--FGVPNLGLAAEHGAFIRDPGGEDWTNLA 81
Query: 667 PKEYAEKLRQLIKALQDEVCH-DGAWIENKGVLLTFHYRETPIERREYIIDRASQIFLEA 725
E + +++ L++ G++IE+K L +HYR + + LE+
Sbjct: 82 EVEDLDWKKEVAAILEEYTERTPGSYIEDKKSALAWHYRNADDDFGVFQAKEL-AEHLES 140
Query: 726 GFEPHNAL------MAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGN----ED 775
+ + + +E +P +G+A+ +L G S + G+ ED
Sbjct: 141 VLKDYPDVRVTQGKKVVEVRPVGVS-KGKAAERLLEE-LGSAGSPPDFPLCIGDDRTDED 198
Query: 776 A 776
Sbjct: 199 M 199
>gnl|CDD|233092 TIGR00685, T6PP, trehalose-phosphatase. Trehalose, a neutral
disaccharide of two glucose residues, is an important
osmolyte for dessication and/or salt tolerance in a
number of prokaryotic and eukaryotic species, including
E. coli, Saccharomyces cerevisiae, and Arabidopsis
thaliana. Many bacteria also utilize trehalose in the
synthesis of trehalolipids, specialized cell wall
constituents believed to be involved in the uptake of
hydrophobic substances. Trehalose dimycolate (TDM, cord
factor) and related substances are important
constituents of the mycobacterial waxy coat and
responsible for various clinically important
immunological interactions with host organism. This
enzyme, trehalose-phosphatase, removes a phosphate group
in the final step of trehalose biosynthesis. The
trehalose-phosphatase from Saccharomyces cerevisiae is
fused to the synthase. At least 18 distinct sequences
from Arabidopsis have been identified, roughly half of
these are of the fungal type, with a fused synthase and
half are like the bacterial members having only the
phosphatase domain. It has been suggested that trehalose
is being used in Arabidopsis as a regulatory molecule in
development and possibly other processes [Cellular
processes, Adaptations to atypical conditions].
Length = 244
Score = 86.4 bits (214), Expect = 8e-19
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 5/166 (3%)
Query: 592 TLENLRHHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHG 651
TL + PD AV+S+ +L++LA P I IISGR V + + AG HG
Sbjct: 13 TLSEIVPDPDAAVVSDRLLTILQKLAARPHNAIWIISGRKFLEKWLGVKLPGLGLAGEHG 72
Query: 652 LEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVC-HDGAWIENKGVLLTFHYRETPIER 710
E + +G+ E + L++E+ G +IE KGV L +HYR+ P+
Sbjct: 73 CE-MKDNGSCQDWVNLTEKIPSWKVRANELREEITTRPGVFIERKGVALAWHYRQAPVPE 131
Query: 711 --REYIIDRASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHIL 754
R + +I E + +E KP ++G +L
Sbjct: 132 LARFRAKELKEKILSFTDLEVMDGKAVVELKPR-FVNKGEIVKRLL 176
>gnl|CDD|224789 COG1877, OtsB, Trehalose-6-phosphatase [Carbohydrate transport and
metabolism].
Length = 266
Score = 76.6 bits (189), Expect = 2e-15
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 59/261 (22%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDL 602
K L LDYDGTLT + HP+ AV + +L+ LA+ P + IISGR+L L
Sbjct: 18 KRLLFLDYDGTLTEIVPHPEAAVPDDRLLSLLQDLASDPRNVVAIISGRSLAELER---- 73
Query: 603 AVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKF 662
+ + + HG E+ P+G +
Sbjct: 74 -----------------------------------LFGVPGIGLIAEHGAEVRDPNGKWW 98
Query: 663 VHPVPKEYAEKLRQLIKALQDEVCH-DGAWIENKGVLLTFHYRETPIERREY--IIDRAS 719
++ + L+++ L+ V G++IE KG + HYR + + + A+
Sbjct: 99 INLAEEADLRWLKEVAAILEYYVERTPGSYIERKGFAVALHYRNAEDDEGAALALAEAAT 158
Query: 720 QIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGN----ED 775
I E M +E +PP + + ++ + + I+AG+ ED
Sbjct: 159 LI-NELKLRVTPGKMVVELRPPGVS---KGA--AIKYIMDELPFDGRFPIFAGDDLTDED 212
Query: 776 AMLALQGIACTFRVDSSPTVK 796
A A+ + S TVK
Sbjct: 213 AFAAVNKL-------DSITVK 226
>gnl|CDD|215317 PLN02580, PLN02580, trehalose-phosphatase.
Length = 384
Score = 71.4 bits (175), Expect = 5e-13
Identities = 64/289 (22%), Positives = 117/289 (40%), Gaps = 79/289 (27%)
Query: 541 NCKLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHP 600
K++L LDYDGTL+P+ PD A+MS+ + ++ +A ++ P
Sbjct: 117 GKKIALFLDYDGTLSPIVDDPDRALMSDAMRSAVKNVA------------------KYFP 158
Query: 601 DLAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGT 660
IISGR+ + + ++V + ++ YAGSHG++I+ P
Sbjct: 159 -----------------------TAIISGRSRDKVYELVGLTELYYAGSHGMDIMGPVRE 195
Query: 661 KFV--HPVPKEYAEKLRQLIKALQ---------DEV---------CHDGAWIENKGVLLT 700
HP + ++ + + Q DEV GA +EN ++
Sbjct: 196 SVSNDHPNCIKSTDQQGKEVNLFQPASEFLPMIDEVFRSLVESTKDIKGAKVENHKFCVS 255
Query: 701 FHYR-------ETPIERREYIIDRASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHI 753
HYR + ++ + ++ L G + +E +P + W++G+A +
Sbjct: 256 VHYRNVDEKNWPLVAQCVHDVLKKYPRLRLTHGRK------VLEVRPVIDWNKGKAVEFL 309
Query: 754 LRTMYGVDWSERVRIIYAG----NEDAMLALQGIACTFRVDSSPTVKSS 798
L ++ G+ + V IY G +EDA L+ + + S K S
Sbjct: 310 LESL-GLSNCDDVLPIYIGDDRTDEDAFKVLREGNRGYGILVSSVPKES 357
>gnl|CDD|177812 PLN02151, PLN02151, trehalose-phosphatase.
Length = 354
Score = 67.4 bits (164), Expect = 6e-12
Identities = 67/264 (25%), Positives = 112/264 (42%), Gaps = 78/264 (29%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDL 602
++ + LDYDGTL+P+ PD A MS++ + + +LA
Sbjct: 98 QIVMFLDYDGTLSPIVDDPDRAFMSKKMRNTVRKLAKC---------------------- 135
Query: 603 AVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPD-GTK 661
P I+SGR E + V + ++ YAGSHG++I P+ G+K
Sbjct: 136 ----------------FP---TAIVSGRCREKVSSFVKLTELYYAGSHGMDIKGPEQGSK 176
Query: 662 FVH--------------PVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETP 707
+ PV E +KL + K++ GA +EN + H+R
Sbjct: 177 YKKENQSLLCQPATEFLPVINEVYKKLVEKTKSIP------GAKVENNKFCASVHFRC-- 228
Query: 708 IERREYIIDRASQIFLEAGFEPHNALM------AIEAKPPVKWDQGRASIHILRTMYGVD 761
+E ++ D A+Q+ + + + LM +E +P +KWD+G+A +L ++ G
Sbjct: 229 VEENKW-SDLANQV--RSVLKNYPKLMLTQGRKVLEIRPIIKWDKGKALEFLLESL-GYA 284
Query: 762 WSERVRIIYAG----NEDAMLALQ 781
V IY G +EDA L+
Sbjct: 285 NCTDVFPIYIGDDRTDEDAFKILR 308
>gnl|CDD|178591 PLN03017, PLN03017, trehalose-phosphatase.
Length = 366
Score = 60.4 bits (146), Expect = 1e-09
Identities = 52/255 (20%), Positives = 103/255 (40%), Gaps = 57/255 (22%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDL 602
++ + LDYDGTL+P+ PD A MS + +R +++LA
Sbjct: 111 QIVMFLDYDGTLSPIVDDPDKAFMSSKMRRTVKKLAKC---------------------- 148
Query: 603 AVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHP----- 657
P I++GR ++ + V + ++ YAGSHG++I P
Sbjct: 149 ----------------FP---TAIVTGRCIDKVYNFVKLAELYYAGSHGMDIKGPAKGFS 189
Query: 658 ----DGTKFVHPVPKEYAEKLRQLIKALQDEV-CHDGAWIENKGVLLTFHYRETPIERRE 712
++ +Y + ++ + L ++ GA +EN + H+R ++
Sbjct: 190 RHKRVKQSLLYQPANDYLPMIDEVYRQLLEKTKSTPGAKVENHKFCASVHFRCVDEKKWS 249
Query: 713 YIIDRASQIFLE-AGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYA 771
++ + + + E +P ++WD+G+A +L ++ G + V +Y
Sbjct: 250 ELVLQVRSVLKNFPTLKLTQGRKVFEIRPMIEWDKGKALEFLLESL-GFGNTNNVFPVYI 308
Query: 772 G----NEDAMLALQG 782
G +EDA L+
Sbjct: 309 GDDRTDEDAFKMLRD 323
>gnl|CDD|223515 COG0438, RfaG, Glycosyltransferase [Cell envelope biogenesis, outer
membrane].
Length = 381
Score = 58.0 bits (139), Expect = 8e-09
Identities = 59/287 (20%), Positives = 102/287 (35%), Gaps = 32/287 (11%)
Query: 212 AAGKTNVVPVVWIHDYQLLVAATTIRQVAYDFVGFHIEDYCLNFIDCCCRRLGSRVDRNN 271
+ VV +H + + + ++ R + +
Sbjct: 104 LLKLLGIPLVVTLHGLIPRILLLPRLLLLLGLLRLLLKRLKKALRLLADRVI-AVSPALK 162
Query: 272 MLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYTKGLVHRIK 331
L+E G + +P GI E+F A L + V+L V RLD KGL I+
Sbjct: 163 ELLEALGVPNKIVVIPNGIDTEKF---APARIGLLPEGGKFVVLYVGRLDPEKGLDLLIE 219
Query: 332 AFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRY 391
A +L ++ P+ + P R + LE A K ++ V + G
Sbjct: 220 AAAKLKKRGPDI---KLVIVGDGPERREELEKLAKKLGLEDNV-KFLGYVP--------- 266
Query: 392 IFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMM- 450
EELA L + + ++ L +G LV E +A G +++ G +
Sbjct: 267 ------DEELAELLASADVFVLPSLSEGFGLVLLEAMAA-----GTPVIASDVGGIPEVV 315
Query: 451 ---HEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRHREQQLD 494
LLV P +++ A+ L + L P EL + E++
Sbjct: 316 EDGETGLLVPPGDVEELADALEQLLEDPELREELGEAARERVEEEFS 362
>gnl|CDD|182291 PRK10187, PRK10187, trehalose-6-phosphate phosphatase; Provisional.
Length = 266
Score = 55.9 bits (135), Expect = 2e-08
Identities = 35/120 (29%), Positives = 57/120 (47%), Gaps = 10/120 (8%)
Query: 592 TLENLRHHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHG 651
TL ++ HPD V+ + + L+ LA D + +ISGR++ L + + AG HG
Sbjct: 24 TLAEIKPHPDQVVVPDNILQGLQLLATANDGALALISGRSMVELDALAKPYRFPLAGVHG 83
Query: 652 LEILHPDG-TKFVH---PVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETP 707
E +G T VH + ++ + +L + L GA +E KG+ HYR+ P
Sbjct: 84 AERRDINGKTHIVHLPDAIARDISVQLHTALAQL------PGAELEAKGMAFALHYRQAP 137
>gnl|CDD|233434 TIGR01484, HAD-SF-IIB, HAD-superfamily hydrolase, subfamily IIB.
This subfamily falls within the Haloacid Dehalogenase
(HAD) superfamily of aspartate-nucleophile hydrolases.
The Class II subfamilies are characterized by a domain
that is located between the second and third conserved
catalytic motifs of the superfamily domain. The IIB
subfamily is distinguished from the IIA subfamily
(TIGR01460) by homology and the predicted secondary
structure of this domain by PSI-PRED. The IIB
subfamily's Class II domain has the following predicted
structure: Helix-Sheet-Sheet-(Helix or
Sheet)-Helix-Sheet-(variable)-Helix-Sheet-Sheet. The IIB
subfamily consists of Trehalose-6-phosphatase
(TIGR00685), plant and cyanobacterial
Sucrose-phosphatase and a closely related group of
bacterial and archaeal sequences, eukaryotic
phosphomannomutase (pfam03332), a large subfamily
("Cof-like hydrolases", TIGR00099) containing many
closely related bacterial sequences, a hypothetical
equivalog containing the E. coli YedP protein, as well
as two small clusters containing OMNI|TC0379 and
OMNI|SA2196 whose relationship to the other groups is
unclear [Unknown function, Enzymes of unknown
specificity].
Length = 204
Score = 52.4 bits (126), Expect = 1e-07
Identities = 49/253 (19%), Positives = 93/253 (36%), Gaps = 67/253 (26%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
L D DGTL +H E +R+ E V + +++GR+L ++
Sbjct: 2 LFFDLDGTLLDPNAHELSPETIEALERLREAG-----VKVVLVTGRSLAEIKE------- 49
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
L+K + + +G I +P ++ P
Sbjct: 50 -----------------------------LLKQLPL---PLIAENGALIFYPGEILYIEP 77
Query: 666 --VPKEYA---EKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETP------IERREYI 714
V +E E++ +K+L + + G +IE+K + + HY + RE
Sbjct: 78 SDVFEEILGIKEEIGAELKSLSE--HYVGTFIEDKAIAVAIHYVGAELGQELDSKMRER- 134
Query: 715 IDRASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAG-- 772
+++ + LE +E P D+G A +L+ + G +R I+ G
Sbjct: 135 LEKIGRNDLELEAIYVGK-TDLEVLPA-GVDKGSALQALLKELNG----KRDEILAFGDS 188
Query: 773 -NEDAMLALQGIA 784
N++ M + G+A
Sbjct: 189 GNDEEMFEVAGLA 201
>gnl|CDD|99974 cd03801, GT1_YqgM_like, This family is most closely related to the
GT1 family of glycosyltransferases and named after YqgM
in Bacillus licheniformis about which little is known.
Glycosyltransferases catalyze the transfer of sugar
moieties from activated donor molecules to specific
acceptor molecules, forming glycosidic bonds. The
acceptor molecule can be a lipid, a protein, a
heterocyclic compound, or another carbohydrate residue.
This group of glycosyltransferases is most closely
related to the previously defined glycosyltransferase
family 1 (GT1). The members of this family may transfer
UDP, ADP, GDP, or CMP linked sugars. The diverse
enzymatic activities among members of this family
reflect a wide range of biological functions. The
protein structure available for this family has the GTB
topology, one of the two protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility. The members of this family are found
mainly in certain bacteria and archaea.
Length = 374
Score = 47.8 bits (114), Expect = 1e-05
Identities = 52/230 (22%), Positives = 91/230 (39%), Gaps = 36/230 (15%)
Query: 281 VHVKALPIGIPFERFVQLAENAPENLK-DENLKVILGVDRLDYTKGLVHRIKAFERLLEK 339
+ V +P G+ ERF A L E+ VIL V RL KG+ ++A +L ++
Sbjct: 170 ITV--IPNGVDTERFRPAPRAARRRLGIPEDEPVILFVGRLVPRKGVDLLLEALAKLRKE 227
Query: 340 HPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQE 399
+P+ V + + + LE A + + V F G + E
Sbjct: 228 YPD----VRLVIVGDGPLREELEALAAELGLGDRV-----TF-----------LGFVPDE 267
Query: 400 ELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGV-LILSPFAGAGGMMHE---ALL 455
+L ALY + + ++ L +G LV E +A G+ ++ S G ++ + LL
Sbjct: 268 DLPALYAAADVFVLPSLYEGFGLVLLEAMAA-----GLPVVASDVGGIPEVVEDGETGLL 322
Query: 456 VNPYEIDAAANVLHRALCMPRDERELRMSQ--LRHREQQLDVNHWMNSFL 503
V P + +A A + R L P E R+ + ++ +
Sbjct: 323 VPPGDPEALAEAILRLLDDP--ELRRRLGEAARERVAERFSWDRVAARTE 370
>gnl|CDD|215979 pfam00534, Glycos_transf_1, Glycosyl transferases group 1.
Mutations in this domain of human PIGA lead to disease
(Paroxysmal Nocturnal haemoglobinuria). Members of this
family transfer activated sugars to a variety of
substrates, including glycogen, Fructose-6-phosphate and
lipopolysaccharides. Members of this family transfer
UDP, ADP, GDP or CMP linked sugars. The eukaryotic
glycogen synthases may be distant members of this
family.
Length = 158
Score = 43.4 bits (103), Expect = 7e-05
Identities = 45/167 (26%), Positives = 68/167 (40%), Gaps = 33/167 (19%)
Query: 312 KVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMD 371
+IL V RL KGL ++AF L E+HP K+ + D E K LK
Sbjct: 3 PIILFVGRLVPEKGLDLLLEAFALLKEQHPNL--KLVIV-------GDGEEEKKLKKLAL 53
Query: 372 QLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQ 431
+L N F G + E+L LYR + + ++ +G LV E +A
Sbjct: 54 KLGLEDNVIF-----------VGFVPDEDLIELYRIADLFVLPSRYEGFGLVLLEAMAA- 101
Query: 432 IREPGVLILSPFAGAGGMMH------EALLVNPYEIDAAANVLHRAL 472
GV +++ GG LLV+P + +A A + + L
Sbjct: 102 ----GVPVIA--TDVGGPAEIVKDGETGLLVDPGDAEALAEAIEKLL 142
>gnl|CDD|99971 cd03798, GT1_wlbH_like, This family is most closely related to the
GT1 family of glycosyltransferases. wlbH in Bordetella
parapertussis has been shown to be required for the
biosynthesis of a trisaccharide that, when attached to
the B. pertussis lipopolysaccharide (LPS) core (band B),
generates band A LPS.
Length = 377
Score = 42.7 bits (101), Expect = 5e-04
Identities = 66/243 (27%), Positives = 93/243 (38%), Gaps = 51/243 (20%)
Query: 271 NMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLK-DENLKVILGVDRLDYTKGLVHR 329
+ L L V +P G+ ERF L E+ KVIL V RL KG+ +
Sbjct: 161 DELKALGIDPEKVTVIPNGVDTERFSPADRAEARKLGLPEDKKVILFVGRLVPRKGIDYL 220
Query: 330 IKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPI 389
I+A RLL+K P+ V + + D +AL+ +L + R
Sbjct: 221 IEALARLLKKRPD----VHLVIVG-----DGPLREALEALAAEL--GLEDRV-------- 261
Query: 390 RYIF-GCIGQEELAALYRDSAIALVTP-LRDGMNLVAKEYVACQ----------IREPGV 437
F G + EE+ A Y +A V P LR+G LV E +AC I E
Sbjct: 262 --TFLGAVPHEEVPAYYA-AADVFVLPSLREGFGLVLLEAMACGLPVVATDVGGIPE--- 315
Query: 438 LILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRHREQQLDVNH 497
+I G LLV P + +A A + R L P L + R ++
Sbjct: 316 IITDGENG--------LLVPPGDPEALAEAILRLLADP--WLRLGRAARRRVAERFS--- 362
Query: 498 WMN 500
W N
Sbjct: 363 WEN 365
>gnl|CDD|99982 cd03811, GT1_WabH_like, This family is most closely related to the
GT1 family of glycosyltransferases. WabH in Klebsiella
pneumoniae has been shown to transfer a GlcNAc residue
from UDP-GlcNAc onto the acceptor GalUA residue in the
cellular outer core.
Length = 353
Score = 39.6 bits (93), Expect = 0.004
Identities = 19/61 (31%), Positives = 27/61 (44%)
Query: 283 VKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPE 342
++ + I E LAE E + VIL V RL KG I+AF L ++ P+
Sbjct: 161 IEVIYNPIDIEEIRALAEEPLELGIPPDGPVILAVGRLSPQKGFDTLIRAFALLRKEGPD 220
Query: 343 Y 343
Sbjct: 221 A 221
>gnl|CDD|234448 TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family.
A conserved gene cluster found sporadically from
Actinobacteria to Proteobacteria to Cyanobacteria
features a radical SAM protein, an N-acetyltransferase,
an oxidoreductase, and two additional proteins whose
functional classes are unclear. The metabolic role of
the cluster is probably biosynthetic. This
glycosyltransferase, named from member MSMEG_0565 from
Mycobacterium smegmatis, occurs in most but not all
instances of the cluster [Unknown function, Enzymes of
unknown specificity].
Length = 373
Score = 39.7 bits (93), Expect = 0.005
Identities = 50/212 (23%), Positives = 82/212 (38%), Gaps = 23/212 (10%)
Query: 277 AGRTVHVKALPIGIPFERFVQLAENAPENLK----DENLKVILGVDRLDYTKGLVHRIKA 332
A + +P G+ RF A+ A L+ +L V ++ K + ++A
Sbjct: 155 AEWGIDATVVPNGVDAARFSPAADAADAALRRRLGLRGGPYVLAVGGIEPRKNTIDLLEA 214
Query: 333 FERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYI 392
F L + P+ Q+ + + +Y A + E + + I
Sbjct: 215 FALLRARRPQ-------AQLVIAGGATLFDYDAYRREFEARAAELGLD------PGAVVI 261
Query: 393 FGCIGQEELAALYRDSAIALVTP-LRDGMNLVAKEYVACQIREPGVL-ILSPFAGAGGMM 450
G + +L ALYR A A P L++G LV E +A I P V ++PF G
Sbjct: 262 TGPVPDADLPALYR-CADAFAFPSLKEGFGLVVLEALASGI--PVVASDIAPFTEYLG-R 317
Query: 451 HEALLVNPYEIDAAANVLHRALCMPRDERELR 482
+A +P + D+ A+ L AL R L
Sbjct: 318 FDAAWADPSDPDSIADALALALDPARRPALLA 349
>gnl|CDD|223635 COG0561, Cof, Predicted hydrolases of the HAD superfamily [General
function prediction only].
Length = 264
Score = 37.4 bits (87), Expect = 0.018
Identities = 37/199 (18%), Positives = 62/199 (31%), Gaps = 48/199 (24%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
L D DGTL L S+ + S ETK L RL V + + +GR L ++
Sbjct: 6 LAFDLDGTL--LDSNKTI---SPETKEALARLRE-KGVKVVLATGRPLPDVLS------- 52
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
+LE L ++ +I+ N G I + F P
Sbjct: 53 ------ILEEL----GLDGPLIT----FN----------------GALIYNGGELLFQKP 82
Query: 666 VPKEYAEKLRQLIKALQDEVCH-----DGAWIENKGVLLTFHYRETPIERREYIIDRASQ 720
+ +E E+L +L++ Q + +G +
Sbjct: 83 LSREDVEELLELLEDFQGIALVLYTDDGIYLTKKRGTFAEARIGFANLSPVGREAAELED 142
Query: 721 IFLEAGFEPHNALMAIEAK 739
+ A + H L +
Sbjct: 143 NKIIALDKDHEILEELVEA 161
>gnl|CDD|234487 TIGR04157, glyco_rSAM_CFB, glycosyltransferase, GG-Bacteroidales
peptide system. Members of this protein family are
predicted glycosyltransferases that occur in conserved
gene neighborhoods in various members of the
Bacteroidales. These neighborhoods feature a radical SAM
enzyme predicted to act in peptide modification (family
TIGR04148), peptides from family TIGR04149 with a
characteristic GG cleavage motif, and several other
proteins.
Length = 406
Score = 38.1 bits (89), Expect = 0.018
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 309 ENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPE 342
E+ K+IL V RLD KG+ + I+AF+ +L+K P
Sbjct: 225 EDEKIILFVGRLDEIKGVDYLIEAFKIVLKKDPN 258
>gnl|CDD|99990 cd03820, GT1_amsD_like, This family is most closely related to the
GT1 family of glycosyltransferases. AmSD in Erwinia
amylovora has been shown to be involved in the
biosynthesis of amylovoran, the acidic exopolysaccharide
acting as a virulence factor. This enzyme may be
responsible for the formation of galactose alpha-1,6
linkages in amylovoran.
Length = 348
Score = 37.6 bits (88), Expect = 0.021
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 298 LAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEY 343
L E D K IL V RL KG I+A+ ++ +KHP++
Sbjct: 165 LPFPPEEPSSDLKSKRILAVGRLVPQKGFDLLIEAWAKIAKKHPDW 210
>gnl|CDD|99959 cd01635, Glycosyltransferase_GTB_type, Glycosyltransferases
catalyze the transfer of sugar moieties from activated
donor molecules to specific acceptor molecules, forming
glycosidic bonds. The acceptor molecule can be a lipid,
a protein, a heterocyclic compound, or another
carbohydrate residue. The structures of the formed
glycoconjugates are extremely diverse, reflecting a wide
range of biological functions. The members of this
family share a common GTB topology, one of the two
protein topologies observed for
nucleotide-sugar-dependent glycosyltransferases. GTB
proteins have distinct N- and C- terminal domains each
containing a typical Rossmann fold. The two domains have
high structural homology despite minimal sequence
homology. The large cleft that separates the two domains
includes the catalytic center and permits a high degree
of flexibility.
Length = 229
Score = 36.8 bits (85), Expect = 0.024
Identities = 30/123 (24%), Positives = 51/123 (41%), Gaps = 24/123 (19%)
Query: 319 RLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRIN 378
RL KGL I+AF L E+ P+ L++ + EY L+ R
Sbjct: 112 RLAPEKGLDDLIEAFALLKERGPD-------LKLVIAGDGPEREYLEELLAALLLLDR-- 162
Query: 379 GRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVL 438
+ ++ G +E LA L + + ++ LR+G LV E +AC G+
Sbjct: 163 ----------VIFLGGLDPEELLALLLAAADVFVLPSLREGFGLVVLEAMAC-----GLP 207
Query: 439 ILS 441
+++
Sbjct: 208 VIA 210
>gnl|CDD|99973 cd03800, GT1_Sucrose_synthase, This family is most closely related
to the GT1 family of glycosyltransferases. The
sucrose-phosphate synthases in this family may be unique
to plants and photosynthetic bacteria. This enzyme
catalyzes the synthesis of sucrose 6-phosphate from
fructose 6-phosphate and uridine 5'-diphosphate-glucose,
a key regulatory step of sucrose metabolism. The
activity of this enzyme is regulated by phosphorylation
and moderated by the concentration of various
metabolites and light.
Length = 398
Score = 37.5 bits (88), Expect = 0.027
Identities = 57/222 (25%), Positives = 82/222 (36%), Gaps = 36/222 (16%)
Query: 279 RTVHVKALPIGIPFERFV----QLAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFE 334
++ +P G+ ERF A A L+D + IL V RLD KG+ I+A+
Sbjct: 185 YPRRIRVVPPGVDLERFTPYGRAEARRARL-LRDPDKPRILAVGRLDPRKGIDTLIRAYA 243
Query: 335 RLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFG 394
L E V E ++ R+ F
Sbjct: 244 ELPELRER-ANLVIVGGPRDDILAMDEEELRELARELGVIDRV--DFPGR---------- 290
Query: 395 CIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSP-FAGA-GGM--- 449
+ +E+L ALYR + + + L + L A E +AC G+ P A A GG
Sbjct: 291 -VSREDLPALYRAADVFVNPALYEPFGLTALEAMAC-----GL----PVVATAVGGPRDI 340
Query: 450 ---MHEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRH 488
LLV+P + +A A L R L P R L + LR
Sbjct: 341 VVDGVTGLLVDPRDPEALAAALRRLLTDPALRRRLSRAGLRR 382
>gnl|CDD|132490 TIGR03449, mycothiol_MshA, D-inositol-3-phosphate
glycosyltransferase. Members of this protein family,
found exclusively in the Actinobacteria, are MshA, the
glycosyltransferase of mycothiol biosynthesis. Mycothiol
replaces glutathione in these species.
Length = 405
Score = 37.4 bits (87), Expect = 0.030
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 32/186 (17%)
Query: 308 DENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALK 367
+ KV+ V R+ K ++A LL++ P+ + + + PS + + AL
Sbjct: 216 PLDTKVVAFVGRIQPLKAPDVLLRAVAELLDRDPD--RNLRVIVVGGPSGSGLATPDALI 273
Query: 368 DEMDQL--VGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAK 425
+ +L R+ RF P EEL +YR + + V + LVA
Sbjct: 274 ELAAELGIADRV--RFLPPR-----------PPEELVHVYRAADVVAVPSYNESFGLVAM 320
Query: 426 EYVACQIREPGVLILS------PFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDER 479
E AC G +++ P A A G LLV+ ++ A+ L R L PR
Sbjct: 321 EAQAC-----GTPVVAARVGGLPVAVADGE--TGLLVDGHDPADWADALARLLDDPR--T 371
Query: 480 ELRMSQ 485
+RM
Sbjct: 372 RIRMGA 377
>gnl|CDD|99991 cd03821, GT1_Bme6_like, This family is most closely related to the
GT1 family of glycosyltransferases. Bme6 in Brucella
melitensis has been shown to be involved in the
biosynthesis of a polysaccharide.
Length = 375
Score = 36.1 bits (84), Expect = 0.062
Identities = 45/212 (21%), Positives = 83/212 (39%), Gaps = 29/212 (13%)
Query: 286 LPIGIPFERF--VQLAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEY 343
+P G+ F + + + ++IL + RL KGL I+AF +L E+ P++
Sbjct: 176 IPNGVDIPPFAALPSRGRRRKFPILPDKRIILFLGRLHPKKGLDLLIEAFAKLAERFPDW 235
Query: 344 VEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAA 403
L I+ P + LK L + R + + G + E+ AA
Sbjct: 236 H-----LVIAGPD--EGGYRAELKQIAAAL--GLEDR--------VTFT-GMLYGEDKAA 277
Query: 404 LYRDSAIALVTPLRD-GMNLVAKEYVACQIREPGV-LILSPFAG-AGGMMHEALLVNPYE 460
D+ + V P +V E +AC G ++ + + + V +
Sbjct: 278 ALADADL-FVLPSHSENFGIVVAEALAC-----GTPVVTTDKVPWQELIEYGCGWVVDDD 331
Query: 461 IDAAANVLHRALCMPRDERELRMSQLRHREQQ 492
+DA A L RAL +P+ + + + E++
Sbjct: 332 VDALAAALRRALELPQRLKAMGENGRALVEER 363
>gnl|CDD|216832 pfam01990, ATP-synt_F, ATP synthase (F/14-kDa) subunit. This
family includes 14-kDa subunit from vATPases, which is
in the peripheral catalytic part of the complex. The
family also includes archaebacterial ATP synthase
subunit F.
Length = 92
Score = 33.3 bits (77), Expect = 0.070
Identities = 10/34 (29%), Positives = 15/34 (44%)
Query: 568 EETKRVLERLANMPDVNIGIISGRTLENLRHHPD 601
EE + E L D+ I +I+ E +R D
Sbjct: 27 EEAEEAFEELLEREDIGIILITEDIAEEIRETID 60
>gnl|CDD|99987 cd03817, GT1_UGDG_like, This family is most closely related to the
GT1 family of glycosyltransferases.
UDP-glucose-diacylglycerol glucosyltransferase (UGDG;
also known as 1,2-diacylglycerol 3-glucosyltransferase)
catalyzes the transfer of glucose from UDP-glucose to
1,2-diacylglycerol forming
3-D-glucosyl-1,2-diacylglycerol.
Length = 374
Score = 35.7 bits (83), Expect = 0.082
Identities = 21/65 (32%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Query: 280 TVHVKALPIGIPFERFVQLAENAPENLK---DENLKVILGVDRLDYTKGLVHRIKAFERL 336
++ +P GI +RF + + E K E+ V+L V RL K + I+AF RL
Sbjct: 169 KRPIEVIPTGIDLDRF-EPVDGDDERRKLGIPEDEPVLLYVGRLAKEKNIDFLIRAFARL 227
Query: 337 LEKHP 341
L++ P
Sbjct: 228 LKEEP 232
>gnl|CDD|211371 cd09260, AP-3_Mu3A_Cterm, C-terminal domain of medium Mu3A subunit
in ubiquitously expressed adaptor protein (AP) complex
AP-3. AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are
four AP complexes, AP-1, AP-2, AP-3, and AP-4, described
in various eukaryotic organisms. Each AP complex
consists of four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3A subunit encoded by ap3m1gene. Mu3A is ubiquitously
expressed in all mammalian tissues and cells. It appears
to be localized to the trans-Golgi network (TGN) and/or
endosomes and participates in trafficking to the
vacuole/lysosome in yeast, flies, and mammals. Unlike
AP-1 and AP-2, which function in conjunction with
clathrin which is a scaffolding protein participating in
the formation of coated vesicles, the nature of the
outer shell of ubiquitous AP-3 containing coats remains
to be elucidated. Membrane-anchored cargo molecules
interact with adaptors through short sorting signals in
their cytosolic segments. Tyrosine-based endocytotic
signals are one of the most important sorting signals.
They are of the form Y-X-X-Phi, where Y is tyrosine, X
is any amino acid and Phi is a bulky hydrophobic residue
that can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-3 mu3A subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic residue-binding.
Length = 254
Score = 35.1 bits (80), Expect = 0.095
Identities = 20/64 (31%), Positives = 39/64 (60%), Gaps = 3/64 (4%)
Query: 576 RLANMPDVNIGIISGRTLENLRHHPDLAVMSEETKRVLERLANMPDVNIGIISGR-TLEN 634
+L+ MPD+++ ++ R L+++ HP + E++RVL + PD N +IS R + +N
Sbjct: 47 KLSGMPDLSLSFMNPRLLDDVSFHPCIRFKRWESERVLSFIP--PDGNFRLISYRVSSQN 104
Query: 635 LMKM 638
L+ +
Sbjct: 105 LVAI 108
>gnl|CDD|99972 cd03799, GT1_amsK_like, This is a family of GT1
glycosyltransferases found specifically in certain
bacteria. amsK in Erwinia amylovora, has been reported
to be involved in the biosynthesis of amylovoran, a
exopolysaccharide acting as a virulence factor.
Length = 355
Score = 34.8 bits (81), Expect = 0.16
Identities = 56/244 (22%), Positives = 97/244 (39%), Gaps = 55/244 (22%)
Query: 254 NFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLKV 313
+F+ ++ R +L + +HV + G+ ERF P E L+
Sbjct: 132 DFVVAISEYNRQQLIR--LLGCDPDK-IHV--VHCGVDLERFPPRPPPPP----GEPLR- 181
Query: 314 ILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQL 373
IL V RL KGL + ++A L ++ ++ R D++ L+DE++ L
Sbjct: 182 ILSVGRLVEKKGLDYLLEALALLKDRGIDF-------------RLDIVGDGPLRDELEAL 228
Query: 374 VGR--INGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTP-------LRDGMNLVA 424
+ + R + + G QEE+ L R + + V P R+G+ +V
Sbjct: 229 IAELGLEDR--------VT-LLGAKSQEEVRELLRAADL-FVLPSVTAADGDREGLPVVL 278
Query: 425 KEYVACQIREPGVLILSPFAGA------GGMMHEALLVNPYEIDAAANVLHRALCMPRDE 478
E +A G+ ++S G LLV P + +A A+ + R L P
Sbjct: 279 MEAMAM-----GLPVISTDVSGIPELVEDG--ETGLLVPPGDPEALADAIERLLDDPELR 331
Query: 479 RELR 482
RE+
Sbjct: 332 REMG 335
>gnl|CDD|173170 PRK14707, PRK14707, hypothetical protein; Provisional.
Length = 2710
Score = 33.6 bits (76), Expect = 0.54
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 554 LTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGR---TLENLRHHPDLAVMSEETK 610
L L+ P++ V + + ERLA+ P++ + + R L L PD+ V +
Sbjct: 883 LNALSKWPNVPVCAAAASALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAAS 942
Query: 611 RVLERLANMPDV 622
+ ERL++ PD+
Sbjct: 943 ALAERLSDDPDL 954
Score = 32.1 bits (72), Expect = 1.8
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 7/75 (9%)
Query: 553 TLTPLTSHPDLAVMSEETKRVLERLANMPDV-----NIGIISGRTLENLRHHPDLAVMSE 607
TL L+ PD + + + ERLA+ P + G++ L L PD AV +E
Sbjct: 546 TLKALSKWPDKQLCAVAASGLAERLADEPQLPKDLHRQGVVI--VLNALSKWPDTAVCAE 603
Query: 608 ETKRVLERLANMPDV 622
+ ERL + PD+
Sbjct: 604 AVNALAERLVDEPDL 618
Score = 30.1 bits (67), Expect = 7.0
Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 554 LTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISG---RTLENLRHHPDLAVMSEETK 610
L L+ PD+ V + + ERL++ PD+ + + + L L PD+ E
Sbjct: 925 LNALSKWPDIPVCATAASALAERLSDDPDLREALDASNLPQVLNALSKWPDVPAGGEVVD 984
Query: 611 RVLERLANMP 620
+ ERL + P
Sbjct: 985 ALAERLVDEP 994
Score = 29.8 bits (66), Expect = 8.8
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 6/111 (5%)
Query: 554 LTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGR---TLENLRHHPDLAVMSEETK 610
L ++ PD AV + + ERLA+ P++ + + L L P++ V +
Sbjct: 841 LNAMSKWPDNAVCAAAAGAMAERLADEPELRHTLTAHGVVIVLNALSKWPNVPVCAAAAS 900
Query: 611 RVLERLANMPDVNIGIISGR---TLENLMKMVNIEKVTYAGSHGLEILHPD 658
+ ERLA+ P++ + + R L L K +I A S E L D
Sbjct: 901 ALAERLADEPELRKALSAHRVATALNALSKWPDIPVCATAASALAERLSDD 951
>gnl|CDD|99992 cd03822, GT1_ecORF704_like, This family is most closely related to
the GT1 family of glycosyltransferases. ORF704 in E.
coli has been shown to be involved in the biosynthesis
of O-specific mannose homopolysaccharides.
Length = 366
Score = 33.0 bits (76), Expect = 0.69
Identities = 23/91 (25%), Positives = 35/91 (38%), Gaps = 8/91 (8%)
Query: 261 RRLGSRVDR-----NNMLVELAGRTVHVKALPI--GIPFERFVQLAENAPENLKDENLKV 313
R L R D + +L L R K I G+P + + E+ + V
Sbjct: 129 RLLLRRADAVIVMSSELLRALLLRAYPEKIAVIPHGVP-DPPAEPPESLKALGGLDGRPV 187
Query: 314 ILGVDRLDYTKGLVHRIKAFERLLEKHPEYV 344
+L L KGL ++A L+ KHP+
Sbjct: 188 LLTFGLLRPYKGLELLLEALPLLVAKHPDVR 218
>gnl|CDD|233551 TIGR01734, D-ala-DACP-lig, D-alanine--poly(phosphoribitol) ligase,
subunit 1. This model represents the enzyme (also
called D-alanine-D-alanyl carrier protein ligase) which
activates D-alanine as an adenylate via the reaction
D-ala + ATP -> D-ala-AMP + PPi, and further catalyzes
the condensation of the amino acid adenylate with the
D-alanyl carrier protein (D-ala-ACP). The D-alanine is
then further transferred to teichoic acid in the
biosynthesis of lipoteichoic acid (LTA) and wall
teichoic acid (WTA) in gram positive bacteria, both
polysacchatides [Cell envelope, Biosynthesis and
degradation of murein sacculus and peptidoglycan].
Length = 502
Score = 32.8 bits (75), Expect = 0.82
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 13/69 (18%)
Query: 326 LVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPN 385
L+ I+AF E +P+ I+ + L Y+ LK++ D+L I R P
Sbjct: 2 LIEAIQAFA---ETYPQT--------IAYRYQGQELTYQQLKEQSDRLAAFIQKR-ILPK 49
Query: 386 WSPIRYIFG 394
SPI ++G
Sbjct: 50 KSPI-IVYG 57
>gnl|CDD|233811 TIGR02289, M3_not_pepF, oligoendopeptidase, M3 family. This family
consists of probable oligoendopeptidases in the M3
family, related to lactococcal PepF and group B
streptococcal PepB (TIGR00181) but in a distinct clade
with considerable sequence differences. The likely
substrate is small peptides and not whole proteins, as
with PepF, but members are not characterized and the
activity profile may differ. Several bacteria have both
a member of this family and a member of the PepF family.
Length = 549
Score = 32.4 bits (74), Expect = 1.1
Identities = 20/71 (28%), Positives = 26/71 (36%), Gaps = 4/71 (5%)
Query: 667 PKEYAEKLRQLIKALQDEVCHDGAWIENKGV--LLTFHYRETPIERREYIIDR--ASQIF 722
P+E EK R L K ++ G L H P EY I + A QI+
Sbjct: 431 PEERKEKYRNLEKKYLPSRVYEDNDELEIGTFWLRQGHIFSVPFYYIEYTIAQIGALQIW 490
Query: 723 LEAGFEPHNAL 733
+P AL
Sbjct: 491 KRYKEDPEEAL 501
>gnl|CDD|235013 PRK02220, PRK02220, 4-oxalocrotonate tautomerase; Provisional.
Length = 61
Score = 29.0 bits (65), Expect = 1.2
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 619 MPDVNIGIISGRTLENLMKMVNIEKVTYA 647
MP V+I +I GRT E L +V + VT A
Sbjct: 1 MPYVHIKLIEGRTEEQLKALV--KDVTAA 27
>gnl|CDD|184409 PRK13942, PRK13942, protein-L-isoaspartate O-methyltransferase;
Provisional.
Length = 212
Score = 31.5 bits (72), Expect = 1.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 13/54 (24%)
Query: 275 ELAGRTVHVKALPIGIPFERFVQLAENAPENLKD---ENLKVILGVDRLDYTKG 325
E+ G++ V + ER +LAE A + LK +N++VI+G D T G
Sbjct: 96 EIVGKSGKV------VTIERIPELAEKAKKTLKKLGYDNVEVIVG----DGTLG 139
>gnl|CDD|99980 cd03808, GT1_cap1E_like, This family is most closely related to the
GT1 family of glycosyltransferases. cap1E in
Streptococcus pneumoniae is required for the synthesis
of type 1 capsular polysaccharides.
Length = 359
Score = 31.8 bits (73), Expect = 1.3
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 265 SRVDRNNMLVE-LAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYT 323
+ DR+ L + + V G+ +RF E PE+ V L V RL
Sbjct: 146 NEDDRDLALKLGIIKKKKTVLIPGSGVDLDRFSPSPEPIPEDDP-----VFLFVARLLKD 200
Query: 324 KGLVHRIKAFERLLEKHPE 342
KG+ ++A L K P
Sbjct: 201 KGIDELLEAARILKAKGPN 219
>gnl|CDD|211372 cd09261, AP-3_Mu3B_Cterm, C-terminal domain of medium Mu3B subunit
in neuron-specific adaptor protein (AP) complex AP-3.
AP complexes participate in the formation of
intracellular coated transport vesicles and select cargo
molecules for incorporation into the coated vesicles in
the late secretory and endocytic pathways. There are
four AP complexes, AP-1, AP-2, AP-3, and AP-4, described
in various eukaryotic organisms. Each AP complex
consists of four subunits: two large chains (one each of
gamma/alpha/delta/epsilon and beta1-4, respectively), a
medium mu chain (mu1-4), and a small sigma chain
(sigma1-4). Each of the four subunits from the different
AP complexes exhibits similarity with each other. This
subfamily corresponds to the C-terminal domain of
heterotetrameric adaptor protein complex 3 (AP-3) medium
mu3B subunit encoded by ap3m2 gene. Mu3B is specifically
expressed in neurons and neuroendocrine cells.
Neuron-specific AP-3 appears to be involved in synaptic
vesicle biogenesis from endosomes in neurons and plays
an important role in synaptic transmission in the
central nervous system. Unlike AP-1 and AP-2, which
function in conjunction with clathrin which is a
scaffolding protein participating in the formation of
coated vesicles, the nature of the outer shell of
neuron-specific AP-3 containing coats remains to be
elucidated. Membrane-anchored cargo molecules interact
with adaptors through short sorting signals in their
cytosolic segments. Tyrosine-based endocytotic signals
are one of the most important sorting signals. They are
of the form Y-X-X-Phi, where Y is tyrosine, X is any
amino acid and Phi is a bulky hydrophobic residue that
can be Leu, Ile, Met, Phe, or Val. These kinds of
sorting signals can be recognized by the C-terminal
domain of AP-3 mu3B subunit, also known as Y-X-X-Phi
signal-binding domain that contains two hydrophobic
pockets, one for the tyrosine-binding and one for the
bulky hydrophobic residue-binding.
Length = 254
Score = 31.6 bits (71), Expect = 1.5
Identities = 25/101 (24%), Positives = 49/101 (48%), Gaps = 18/101 (17%)
Query: 533 YLNN--YVDGNCKLSLILDYDGTLTPLTSHPDLAVMSEETKRVLE---RLANMPDVNIGI 587
Y NN Y D ++ I+D G+ ++ E + V++ +L MPD+ +
Sbjct: 10 YTNNEAYFDVIEEIDAIIDKSGS-----------TITAEIQGVIDACVKLTGMPDLTLSF 58
Query: 588 ISGRTLENLRHHPDLAVMSEETKRVLERLANMPDVNIGIIS 628
++ R L+++ HP + E++R+L + PD N ++S
Sbjct: 59 MNPRLLDDVSFHPCVRFKRWESERILSFIP--PDGNFRLLS 97
>gnl|CDD|215018 smart01087, COG6, Conserved oligomeric complex COG6. COG6 is a
component of the conserved oligomeric golgi complex,
which is composed of eight different subunits and is
required for normal golgi morphology and localisation.
Length = 598
Score = 30.4 bits (69), Expect = 4.1
Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 4/66 (6%)
Query: 292 FERFVQLAENAPENLKDENLKVILGVDRLDYTKGLVHRI----KAFERLLEKHPEYVEKV 347
+ +Q+ + + E LK + K+I ++ LD K + K E L + +++ +
Sbjct: 419 LDPPLQMCQLSAELLKSPDAKLIFMINCLDLIKSTLSPYEFSDKRLEMLQAQIEAHLDTL 478
Query: 348 TFLQIS 353
T LQ S
Sbjct: 479 TNLQAS 484
>gnl|CDD|99981 cd03809, GT1_mtfB_like, This family is most closely related to the
GT1 family of glycosyltransferases. mtfB
(mannosyltransferase B) in E. coli has been shown to
direct the growth of the O9-specific polysaccharide
chain. It transfers two mannoses into the position 3 of
the previously synthesized polysaccharide.
Length = 365
Score = 30.0 bits (68), Expect = 5.2
Identities = 12/36 (33%), Positives = 16/36 (44%)
Query: 453 ALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRH 488
AL +P + +A A + R L P ELR L
Sbjct: 315 ALYFDPLDPEALAAAIERLLEDPALREELRERGLAR 350
>gnl|CDD|187607 cd05349, BKR_2_SDR_c, putative beta-ketoacyl acyl carrier protein
[ACP]reductase (BKR), subgroup 2, classical (c) SDR.
This subgroup includes Rhizobium sp. NGR234 FabG1. The
Escherichai coli K12 BKR, FabG, belongs to a different
subgroup. BKR catalyzes the NADPH-dependent reduction of
ACP in the first reductive step of de novo fatty acid
synthesis (FAS). FAS consists of four elongation steps,
which are repeated to extend the fatty acid chain
through the addition of two-carbo units from malonyl
acyl-carrier protein (ACP): condensation, reduction,
dehydration, and a final reduction. Type II FAS, typical
of plants and many bacteria, maintains these activities
on discrete polypeptides, while type I FAS utilizes one
or two multifunctional polypeptides. BKR resembles enoyl
reductase, which catalyzes the second reduction step in
FAS. SDRs are a functionally diverse family of
oxidoreductases that have a single domain with a
structurally conserved Rossmann fold (alpha/beta folding
pattern with a central beta-sheet), an NAD(P)(H)-binding
region, and a structurally diverse C-terminal region.
Classical SDRs are typically about 250 residues long,
while extended SDRS are approximately 350 residues.
Sequence identity between different SDR enzymes are
typically in the 15-30% range, but the enzymes share the
Rossmann fold NAD-binding motif and characteristic
NAD-binding and catalytic sequence patterns. These
enzymes have a 3-glycine N-terminal NAD(P)(H)-binding
pattern (typically, TGxxxGxG in classical SDRs and
TGxxGxxG in extended SDRs), while substrate binding is
in the C-terminal region. A critical catalytic Tyr
residue (Tyr-151, human 15-hydroxyprostaglandin
dehydrogenase (15-PGDH) numbering), is often found in a
conserved YXXXK pattern. In addition to the Tyr and Lys,
there is often an upstream Ser (Ser-138, 15-PGDH
numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or
additional Ser, contributing to the active site.
Substrates for these enzymes include sugars, steroids,
alcohols, and aromatic compounds. The standard reaction
mechanism is a proton relay involving the conserved Tyr
and Lys, as well as Asn (or Ser). Some SDR family
members, including 17 beta-hydroxysteroid dehydrogenase
contain an additional helix-turn-helix motif that is not
generally found among SDRs.
Length = 246
Score = 29.3 bits (66), Expect = 6.1
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 10/67 (14%)
Query: 171 FHSMPD-RAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGK-------TNVV--P 220
F PD R F+ W+ Y + E LN L+ V+ D G TN+ P
Sbjct: 87 FPFDPDQRKTFDTIDWEDYQQQLEGAVKGALNLLQAVLPDFKERGSGRVINIGTNLFQNP 146
Query: 221 VVWIHDY 227
VV HDY
Sbjct: 147 VVPYHDY 153
>gnl|CDD|223971 COG1041, COG1041, Predicted DNA modification methylase [DNA
replication, recombination, and repair].
Length = 347
Score = 29.7 bits (67), Expect = 6.2
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 435 PGVLILSPFAGAGGMMHEALLV--NPYEIDA 463
G L+L PF G GG++ EA L+ D
Sbjct: 197 RGELVLDPFCGTGGILIEAGLMGARVIGSDI 227
>gnl|CDD|240503 cd13745, SPRY_PRY_TRIM39, PRY/SPRY domain in butyrophilins and
butyrophilins-like proteins, pyrin, as well as
tripartite motif-containing proteins (TRIM21, 27 and
others). This domain, consisting of the distinct
N-terminal PRY subdomain followed by the SPRY subdomain,
is found at the C-terminus of pyrin, several tripartite
motif-containing proteins (TRIMs), including E3
ubiquitin-protein ligase (TRIM21), RET finger protein
(RFP)/tripartite motif protein 27 (TRIM27), as well as
butyrophilin (Btns) and butyrophilin-like (Btnl) family
members, with the exception of Btnl2. Btn and Btnl
family members are novel regulators of immune responses,
with many of the genes located within the MHC. They are
implicated in T-cell inhibition and modulation of
epithelial cell-T cell interactions. TRIM21 (also known
as RO52, SSA1 or RNF81) is a major autoantigen in
autoimmune diseases such as rheumatoid arthritis,
systemic lupus erythematosus, and Sjorgen's syndrome.
TRIM27 (also known as Ret finger protein, RFP or RNF76)
negatively regulates CD4 T-cells by ubiquitinating and
inhibiting the class II phosphatidylinositol 3 kinase
C2beta (PI3K-C2beta), a kinase critical for KCa3.1
channel activation. The PRY/SPRY domain of Pyrin, which
is mutated in familial Mediterranean fever patients,
interacts with inflammasome components and inhibits
proIL-1beta processing.
Length = 184
Score = 29.2 bits (65), Expect = 6.6
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 4/35 (11%)
Query: 551 DGTLTPLTSHPDLAVMSEETKRVL---ERLANMPD 582
D TL P T+HP+L V+SE+ K V RL ++PD
Sbjct: 4 DVTLDPETAHPNL-VLSEDRKSVKFVETRLRDLPD 37
>gnl|CDD|233303 TIGR01177, TIGR01177, TIGR01177 family protein. This family is
found exclusively in the Archaea [Hypothetical proteins,
Conserved].
Length = 329
Score = 29.3 bits (66), Expect = 7.5
Identities = 11/33 (33%), Positives = 13/33 (39%), Gaps = 2/33 (6%)
Query: 435 PGVLILSPFAGAGGMMHEALL--VNPYEIDAAA 465
G +L PF G GG + EA L D
Sbjct: 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDW 214
>gnl|CDD|234865 PRK00923, PRK00923, sirohydrochlorin cobaltochelatase; Reviewed.
Length = 126
Score = 28.3 bits (64), Expect = 7.9
Identities = 15/38 (39%), Positives = 25/38 (65%), Gaps = 2/38 (5%)
Query: 319 RLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPS 356
RL Y K +V +I E++ EKHP Y+ +V F++ + P+
Sbjct: 12 RLPYNKEVVTKIA--EKIKEKHPFYIVEVGFMEFNEPT 47
>gnl|CDD|131930 TIGR02884, spore_pdaA, delta-lactam-biosynthetic de-N-acetylase.
Muramic delta-lactam is an unusual constituent of
peptidoglycan, found only in bacterial spores in the
peptidoglycan wall, or spore cortex. The proteins in
this family are PdaA (yfjS), a member of a larger family
of polysaccharide deacetylases, and are specificially
involved in delta-lactam biosynthesis. PdaA acts
immediately after CwlD, an N-acetylmuramoyl-L-alanine
amidase and performs a de-N-acetylation. PdaA may also
perform the following transpeptidation for lactam ring
formation, as heterologous expression in E. coli of CwlD
and PdaA together is sufficient for delta-lactam
production [Cell envelope, Biosynthesis and degradation
of murein sacculus and peptidoglycan, Cellular
processes, Sporulation and germination].
Length = 224
Score = 28.9 bits (65), Expect = 8.7
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 646 YAGSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDE 684
YA ++ +HP +H V K+ AE L ++IK L+++
Sbjct: 175 YAYKQIMKKIHPGAILLLHAVSKDNAEALDKIIKDLKEQ 213
>gnl|CDD|240305 PTZ00174, PTZ00174, phosphomannomutase; Provisional.
Length = 247
Score = 29.1 bits (66), Expect = 8.9
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISG 590
L+ D DGTLT P + ++E K L +L + IG++ G
Sbjct: 8 LLFDVDGTLT----KPRNPI-TQEMKDTLAKLKSK-GFKIGVVGG 46
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0724 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,893,693
Number of extensions: 4369564
Number of successful extensions: 4544
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4470
Number of HSP's successfully gapped: 98
Length of query: 808
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 703
Effective length of database: 6,280,432
Effective search space: 4415143696
Effective search space used: 4415143696
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.1 bits)