RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2719
(808 letters)
>1uqt_A Alpha, alpha-trehalose-phosphate synthase; glycosyltransferase,
transferase; HET: U2F; 2.0A {Escherichia coli} SCOP:
c.87.1.6 PDB: 1uqu_A* 2wtx_A* 1gz5_A*
Length = 482
Score = 500 bits (1289), Expect = e-170
Identities = 141/457 (30%), Positives = 205/457 (44%), Gaps = 65/457 (14%)
Query: 100 MNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYY 159
+ G G+W GWSG + N ++ + + + YY
Sbjct: 28 ILGALKAAGGLWFGWSGETGNEDQPLKKVKKGN----------ITWASFNLSEQDLDEYY 77
Query: 160 NGCCNGTFWPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVV 219
N N WP FH D F W Y +VN A+ L +++D D
Sbjct: 78 NQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLAD----KLLPLLQDDD-------- 125
Query: 220 PVVWIHDYQLLVAATTIRQV----------------------------------AYDFVG 245
++WIHDY LL A +R+ YD +G
Sbjct: 126 -IIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLG 184
Query: 246 FHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAP-- 303
F E+ L F+DC G+ + PIGI + + A
Sbjct: 185 FQTENDRLAFLDCLSNLTRVTTRSAKS-HTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPP 243
Query: 304 --ENLKDE--NLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTD 359
LK E N++ I V+RLDY+KGL R A+E LLEK+P++ K+ + QI+ SR D
Sbjct: 244 KLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGD 303
Query: 360 VLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDG 419
V Y+ ++ +++ GRING++ + W+P+ Y+ ++ L ++R S + LVTPLRDG
Sbjct: 304 VQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDG 363
Query: 420 MNLVAKEYVACQIRE-PGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDE 478
MNLVAKEYVA Q PGVL+LS FAGA + AL+VNPY+ D A L RAL M E
Sbjct: 364 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAE 423
Query: 479 RELRMSQLRHREQQLDVNHWMNSFLSSMGALDNDDDS 515
R R +++ + D+NHW F+S + +
Sbjct: 424 RISRHAEMLDVIVKNDINHWQECFISDLKQIVPRSAE 460
Score = 100 bits (252), Expect = 2e-22
Identities = 22/94 (23%), Positives = 31/94 (32%), Gaps = 10/94 (10%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDK 60
AGGL + + G+W GWSG + N ++ +
Sbjct: 21 AGGLAVGILGALKAAGGLWFGWSGETGNEDQPLKKVKKGN----------ITWASFNLSE 70
Query: 61 DEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWK 94
+ + YYN N WP FH D F W
Sbjct: 71 QDLDEYYNQFSNAVLWPAFHYRLDLVQFQRPAWD 104
>3t5t_A Putative glycosyltransferase; GTB fold, pseudoglycosyltransferase;
1.70A {Streptomyces hygroscopicus} PDB: 3t7d_A*
Length = 496
Score = 459 bits (1182), Expect = e-154
Identities = 80/463 (17%), Positives = 142/463 (30%), Gaps = 68/463 (14%)
Query: 100 MNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPT-SGLTSSQVIPVHVDKDEFEAY 158
+ + WI + D +P+ V + D F
Sbjct: 38 VAEQAGVLNISWIASADS---EDDRRASALNPDGVTMELHSGREILVRLIRHDPAVFRNV 94
Query: 159 YNGCCNGTFWPLFHSMPDRAV------FNAETWKTYCKVNEEFANCTLNALRNVIKDLDA 212
N W + DR E W + + +FA+ L +
Sbjct: 95 QNFMTANLMWAANNYGWDRWTQPSFGSDAREGWADFGRFTRDFADAILKSSAQSADP--- 151
Query: 213 AGKTNVVPVVWIHDYQLLVAATTIRQV--------------------------------- 239
V +HDYQL+ +R+
Sbjct: 152 --------VYLVHDYQLVGVPALLREQRPDAPILLFVHIPWPSADYWRILPKEIRTGILH 203
Query: 240 ---AYDFVGFHIEDYCLNFIDCCCRRLG-SRVDRNNMLVELAGRTVHVKALPIGIPFERF 295
+GF + +C NF++ L +R+DR M VE G ++ +P+G
Sbjct: 204 GMLPATTIGFFADRWCRNFLESVADLLPDARIDREAMTVEWRGHRTRLRTMPLGYSPLTL 263
Query: 296 VQLAENAPENLKD--ENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQIS 353
PE +++ + ++++ R D K ++AF +L +EK L
Sbjct: 264 DGRNPQLPEGIEEWADGHRLVVHSGRTDPIKNAERAVRAF--VLAARGGGLEKTRMLVRM 321
Query: 354 VPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALV 413
P+R V ++ V N S I A +R + + +
Sbjct: 322 NPNRLYVPANADYVHRVETAVAEANAELG----SDTVRIDNDNDVNHTIACFRRADLLIF 377
Query: 414 TPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHE-ALLVNPYEIDAAANVLHRAL 472
DG NL E +ILS GA ++ E VNP+++ A + AL
Sbjct: 378 NSTVDGQNLSTFEAPLVN-ERDADVILSETCGAAEVLGEYCRSVNPFDLVEQAEAISAAL 436
Query: 473 CMPRDERELRMSQLRHREQQLDVNHWMNSFLSSMGALDNDDDS 515
+R ++ R + + W+ + L + A +
Sbjct: 437 AAGPRQRAEAAARRRDAARPWTLEAWVQAQLDGLAADHAARTA 479
Score = 87.8 bits (218), Expect = 3e-18
Identities = 17/101 (16%), Positives = 22/101 (21%), Gaps = 10/101 (9%)
Query: 1 AGGLVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPT-SGLTSSQVIPVHVD 59
GG VA WI + D +P+ V + D
Sbjct: 31 PGGTGNVVAEQAGVLNISWIASADS---EDDRRASALNPDGVTMELHSGREILVRLIRHD 87
Query: 60 KDEFEAYYNGCCNGTFWPLFHSMPDRAV------FNAETWK 94
F N W + DR E W
Sbjct: 88 PAVFRNVQNFMTANLMWAANNYGWDRWTQPSFGSDAREGWA 128
>1u02_A Trehalose-6-phosphate phosphatase related protein; structural
genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP:
c.108.1.15
Length = 239
Score = 154 bits (391), Expect = 1e-42
Identities = 43/254 (16%), Positives = 80/254 (31%), Gaps = 59/254 (23%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
+ LDYDGTL P+ +P+ + ++ L D
Sbjct: 4 IFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERFDT---------------------- 41
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
I++GR+ E + + + ++ + HG +G +
Sbjct: 42 -------------------YIVTGRSPEEISRFLPLD-INMICYHGACS-KINGQIVYNN 80
Query: 666 VPKEYAEKLRQLIKALQDEV-CHDGAWIENKGVLLTFHYRETPIERREYIIDRASQIFLE 724
+ ++ + + V G I K + + +H + + + R +I
Sbjct: 81 GSDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAVLYHLGLMGADMKPKLRSRIEEIARI 140
Query: 725 AGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGN----EDAMLAL 780
G E + M IE + P ++G A + I AG+ E A A
Sbjct: 141 FGVETYYGKMIIELRVP-GVNKGSAIRSVR---------GERPAIIAGDDATDEAAFEAN 190
Query: 781 QGIACTFRVDSSPT 794
A T +V T
Sbjct: 191 DD-ALTIKVGEGET 203
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 77.2 bits (189), Expect = 1e-14
Identities = 93/542 (17%), Positives = 177/542 (32%), Gaps = 135/542 (24%)
Query: 298 LAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSR 357
L+ + + + K D D K ++ + + + ++ + V L ++ S+
Sbjct: 22 LSVFEDAFVDNFDCK-----DVQDMPKSILSK-EEIDHIIMS-KDAVSGTLRLFWTLLSK 74
Query: 358 TDVLEYKALKDEMDQ----LVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALV 413
+ + K +++ + L+ I +P+ YI E+ LY D+ +
Sbjct: 75 QEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYI------EQRDRLYNDNQV--F 126
Query: 414 TPL---RDGMNLVAKEYVACQIR-EPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVL- 468
R L ++ ++R VLI G G + A +V
Sbjct: 127 AKYNVSRLQPYLKLRQ-ALLELRPAKNVLI----DGVLGSGKTWV---------ALDVCL 172
Query: 469 -HRALC-MP----------RDERELRMSQLRHREQQLDVNHWMNSFLSSMGALDNDDDSD 516
++ C M + E + L+ Q+D N S SS L
Sbjct: 173 SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 517 PLS--------AKTLQLTLDD-FDLYLNNYVDGNCKLSLILDYDGTLT-----PLTSHPD 562
L L L L + + N + +CK+ L+ +T T+H
Sbjct: 233 ELRRLLKSKPYENCL-LVLLNVQNAKAWNAFNLSCKI-LLTTRFKQVTDFLSAATTTHIS 290
Query: 563 LAVMS-----EETKRVLERLANMPDVNIGIISGRTL--ENLRHHPDLAVMSEETKRVLER 615
L S +E K +L + + + L E L +P + + E
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRP--------QDLPREVLTTNP-RRL-----SIIAES 336
Query: 616 LANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTK------FVHP---- 665
+ + T +N K VN +K+T L +L P + V P
Sbjct: 337 IRDGLA---------TWDNW-KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAH 386
Query: 666 VPKEYAEKL-RQLIKALQDEV---CHDGAWIE--NKGVLLTFH--YRETPIERREY---- 713
+P + +IK+ V H + +E K ++ Y E ++
Sbjct: 387 IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH 446
Query: 714 --IIDRASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERV---RI 768
I+D + + F+ + P DQ S HI + ++ ER+ R+
Sbjct: 447 RSIVDHYN---IPKTFDSDD-------LIPPYLDQYFYS-HIGHHLKNIEHPERMTLFRM 495
Query: 769 IY 770
++
Sbjct: 496 VF 497
Score = 34.1 bits (77), Expect = 0.23
Identities = 62/490 (12%), Positives = 124/490 (25%), Gaps = 194/490 (39%)
Query: 4 LVTAVA-PVVIDCK---GI-WIGWSGLYDLAPDEVIP-------EADPNDQAPTSGLTSS 51
+ V + CK I W+ + +P+ V+ + DPN + + +S+
Sbjct: 166 VALDVCLSYKVQCKMDFKIFWLN-LKNCN-SPETVLEMLQKLLYQIDPNWTSRSDH-SSN 222
Query: 52 QVIPVHVDKDEFEAY-----YNGC-------CNGTFWPLFH-------SMPDRAVFNA-E 91
+ +H + E Y C N W F+ + + V +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLS 282
Query: 92 TWKVSHLKMNGV--------TLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSS 143
+H+ ++ + ++ P ++ E
Sbjct: 283 AATTTHISLDHHSMTLTPDEVKSLLLKYLD------CRPQDLPREV-------------L 323
Query: 144 QVIPVHVDKDEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWKTYC--KVNEEFANCTLN 201
P + + WK K+ + LN
Sbjct: 324 TTNPRRL--------------SIIAESIRDGLATW----DNWKHVNCDKLTTIIESS-LN 364
Query: 202 AL-----RNVIKDL-----DAAGKTNVVPVVW---------------------------- 223
L R + L A T ++ ++W
Sbjct: 365 VLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKES 424
Query: 224 ---IHDYQLLVAATTIRQVA-----------------------------YDFVGFHIEDY 251
I L + + A Y +G H+++
Sbjct: 425 TISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN- 483
Query: 252 CLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQ-------LAENAPE 304
+R + R V + F RF++ A NA
Sbjct: 484 ------------IEHPERMTLF-----RMVFLD-------F-RFLEQKIRHDSTAWNASG 518
Query: 305 NLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYK 364
++ + L + Y + +ERL+ +++ K+ I TD+L
Sbjct: 519 SILN-----TLQQLKF-YKPYICDNDPKYERLVNAILDFLPKIEENLICSKY-TDLLRI- 570
Query: 365 ALKDEMDQLV 374
AL E + +
Sbjct: 571 ALMAEDEAIF 580
Score = 31.4 bits (70), Expect = 1.6
Identities = 34/222 (15%), Positives = 72/222 (32%), Gaps = 60/222 (27%)
Query: 598 HHPDLAV--MSEETKRVLERL----------ANMPDVNIGIISGRTLENLMKMVNIEKVT 645
HH D + K +L ++ D+ I+S +++++ + T
Sbjct: 5 HHMDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64
Query: 646 YAGSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRE 705
L + V +++ E + L+ + ++ + + R+
Sbjct: 65 L---RLFWTLLSKQEEMV----QKFVE------EVLRI----NYKFLMSP---IKTEQRQ 104
Query: 706 TPIERREYIIDR-----ASQIFLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGV 760
+ R YI R +Q+ F +N + P + R ++ LR V
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQV-----FAKYN----VSRLQPYL--KLRQALLELRPAKNV 153
Query: 761 DWSERVRIIY--AGNEDAMLALQGIAC-TFRVDSSPTVKSSW 799
+I G+ +AL C +++V K W
Sbjct: 154 -------LIDGVLGSGKTWVALD--VCLSYKVQCKMDFKIFW 186
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 75.1 bits (184), Expect = 7e-14
Identities = 100/609 (16%), Positives = 170/609 (27%), Gaps = 243/609 (39%)
Query: 274 VELAGRTVHVKALPIGIPFERFV-QLAENAPENLKDENLKVILGVDRLDYTKGL-VHRIK 331
EL G+ F +V L E + D+ L + L Y +G +H +
Sbjct: 58 AELVGK------------FLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA 105
Query: 332 AFERLLEKHPEYVEKVTFLQISVPSRTDVLE--YKALKDEMDQLVGRINGRFSKPNWSP- 388
A +LL+++ ++ ++++ A + R F K + S
Sbjct: 106 A--KLLQEND----------TTLVKTKELIKNYITAR-----IMAKR---PFDKKSNSAL 145
Query: 389 ----------IRYIFGCIGQ-------EELAALYRDSAIALVTPLRDGMNLVAKEYVACQ 431
+ IFG GQ EEL LY+ LV L
Sbjct: 146 FRAVGEGNAQLVAIFG--GQGNTDDYFEELRDLYQTYH-VLVGDL--------------- 187
Query: 432 IREPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRHREQ 491
I +A L + D + Q
Sbjct: 188 -----------------------------IKFSAETLSELIRTTLDAE-------KVFTQ 211
Query: 492 QLDVNHWMNSFLSSMGALDNDDD--------SDPLSAKTLQLTLDDFDLYLNNYVDGNCK 543
L++ W L+N + S P+S + + L +YV K
Sbjct: 212 GLNILEW----------LENPSNTPDKDYLLSIPISCPLIGVI------QLAHYVV-TAK 254
Query: 544 LSLILDYD-GTLTP----LTSH-PDL---AVMS---------EETKRVLERLANMPDVNI 585
+L + G L T H L ++ ++ + L I
Sbjct: 255 ---LLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLF-----FI 306
Query: 586 GIISGRTLENLRHHPDLAVMSEETKRVLERLANMPDVNIGI------ISGRTLENLMKMV 639
G + +P+ ++ + LE N G+ IS T E +
Sbjct: 307 G------VRCYEAYPNTSLPPSILEDSLE-------NNEGVPSPMLSISNLTQEQVQDY- 352
Query: 640 NIEKV-TY--AGSHGLEI-LH--PDGTKFV---HPVPKEYAEKLRQLIKALQDEVCHDGA 690
+ K ++ AG +EI L V P + L L L+ G
Sbjct: 353 -VNKTNSHLPAGKQ-VEISLVNGAK--NLVVSGPP------QSLYGLNLTLRKAKAPSGL 402
Query: 691 WIENKGVLLTFHYRETPI-ERREYIIDRASQIFLEAGFEP-HNALM--AIE------AKP 740
+++ P ER+ +R FL P H+ L+ A + K
Sbjct: 403 -DQSR----------IPFSERKLKFSNR----FLPV-ASPFHSHLLVPASDLINKDLVKN 446
Query: 741 PVKWDQGRASIHILRTMYGVDWSERVRIIYAGNEDAMLALQGIACTFRVDSSPTVKSSWK 800
V ++ I + T G D +G+ + V W+
Sbjct: 447 NVSFNAKDIQIPVYDTFDGSDLRV-----LSGSISERIVDC--IIRLPVK--------WE 491
Query: 801 Q----GSNH 805
+ H
Sbjct: 492 TTTQFKATH 500
Score = 52.4 bits (125), Expect = 6e-07
Identities = 82/511 (16%), Positives = 144/511 (28%), Gaps = 185/511 (36%)
Query: 40 ND-QAPTSGLTSSQVIPVHVDKDEFEAYYNGCC--NGTFWP-----LFHSMPDR-----A 86
ND A + L + K+ + Y F LF ++ + A
Sbjct: 99 NDIHALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVA 158
Query: 87 VF----NAETWKVSHLKMNGVTLEITGIW----------IGWSG--LYDLAPDEVIPEA- 129
+F N + + + E+ ++ I +S L +L + E
Sbjct: 159 IFGGQGNTDDY----FE------ELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 130 ------------DPNDQAPTSGLTSSQV-IP-------VHVDKDEFEAYYN-----GCCN 164
+P++ L S + P H Y G
Sbjct: 209 FTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH--------YVVTAKLLGFTP 260
Query: 165 GTFWPLFHSMPDR------AVFNAE--TWKTYCKVNEEFANCTLNALRNVIKDLDAAGKT 216
G AV AE +W E F A+ +
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSW-------ESFFVSVRKAITVLF--------- 304
Query: 217 NVVPVVWI----HD-YQLLVAATTIRQVAYDFVGFHIEDYCLNFIDCCCRRLGSRVDRNN 271
+I ++ Y +I + + + + L+ + ++ V++ N
Sbjct: 305 ------FIGVRCYEAYPNTSLPPSILEDSLE-NNEGVPSPMLSISNLTQEQVQDYVNKTN 357
Query: 272 MLVEL-AGRTVHVKALPIGIPFERFVQLAENAPENLKD-----ENLKVILGVDRLDYTKG 325
L AG+ V + +L G + V ++ P++L K G+D+
Sbjct: 358 S--HLPAGKQVEI-SLVNG-A-KNLV-VS-GPPQSLYGLNLTLRKAKAPSGLDQ------ 404
Query: 326 LVHRIKAFERLLEKHPEYVEKVTFLQISVP--SRTDVLEYKALKDEMDQLVGRINGRFSK 383
RI ER ++ FL ++ P S L D IN K
Sbjct: 405 --SRIPFSER----KLKFS--NRFLPVASPFHS-----HL--LVPASDL----INKDLVK 445
Query: 384 PNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNL------VAKEYVACQIREP-- 435
N S +++ I V DG +L +++ V C IR P
Sbjct: 446 NNVS--------FNAKDI-------QIP-VYDTFDGSDLRVLSGSISERIVDCIIRLPVK 489
Query: 436 ----------GVLILSP--FAGAGGMMHEAL 454
+L P +G G + H
Sbjct: 490 WETTTQFKATHILDFGPGGASGLGVLTHRNK 520
Score = 48.9 bits (116), Expect = 7e-06
Identities = 66/355 (18%), Positives = 93/355 (26%), Gaps = 173/355 (48%)
Query: 1 AGGLVTAVAPVVIDC---------KGI----WIGWSG-----LYDLAPDEVIPEADPNDQ 42
+ GLVTAVA D K I +IG L P + + N+
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 43 APT-----SGLTSSQVIPVHVDKDEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWKVSH 97
P+ S LT QV +V+K N H + V +S
Sbjct: 334 VPSPMLSISNLTQEQVQD-YVNK----------TNS------HLPAGKQVE------IS- 369
Query: 98 LKMNG-----VTLEITGIWIGWSG----LYDL--------APDEVIPEADPNDQA--PTS 138
L NG V+ G LY L AP + DQ+ P S
Sbjct: 370 LV-NGAKNLVVS-----------GPPQSLYGLNLTLRKAKAPSGL-------DQSRIPFS 410
Query: 139 G---LTSSQVIPVHVDKDEFEAYYNGCCNGTFWPLFHS----------MPDRA------- 178
S++ +PV P FHS D
Sbjct: 411 ERKLKFSNRFLPVAS------------------P-FHSHLLVPASDLINKDLVKNNVSFN 451
Query: 179 -------VFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVVPVVWIHDYQLLV 231
V++ ++ + + + +I+ PV W +
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLS---GSISERIVDCIIRL----------PVKW--ETTTQF 496
Query: 232 AATTIRQVAYDFVGFHIEDYCLNFIDC---CCRRLGSRVDRNNMLVELAGRTVHV 283
AT HI +D LG RN G V V
Sbjct: 497 KAT------------HI-------LDFGPGGASGLGVLTHRN-----KDGTGVRV 527
Score = 41.2 bits (96), Expect = 0.001
Identities = 47/272 (17%), Positives = 82/272 (30%), Gaps = 97/272 (35%)
Query: 210 LDAAGKTNVVPVVWIHDYQLLVAATTIRQVAYDFVGFHIEDYCLNFIDCCCRRLGSRVDR 269
+D + VW + A + Y GF I D +
Sbjct: 1633 MDLYKTSKAAQDVW--N-----RADNHFKDTY---GFSILD----------------IVI 1666
Query: 270 NNMLVELAGRTVH---VKALPIGIPFERFVQLAENAPENLKDENLKVILGVDR--LDYTK 324
NN V L T+H K I E + + + K + K+ ++ YT
Sbjct: 1667 NNP-VNL---TIHFGGEKGKRIR---ENYSAMIFETIVDGKLKTEKIFKEINEHSTSYT- 1718
Query: 325 GLVHRIKAFERLLEKHPEYVEKVT-FLQ--ISVPSRTDVLEYKALKDEMDQLVGRINGRF 381
F + + T F Q +++ ++ LK + G I
Sbjct: 1719 --------FR-----SEKGLLSATQFTQPALTLME---KAAFEDLKSK-----GLI---- 1753
Query: 382 SKPNWSPIRYIF-----GCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPG 436
P F G E AAL +++A V + + +V R G
Sbjct: 1754 ------PADATFAGHSLG-----EYAAL---ASLADVMSIESLVEVVFY-------R--G 1790
Query: 437 VLI--LSPFAGAGGMMHEALLVNPYEIDAAAN 466
+ + P G + + +NP + A+ +
Sbjct: 1791 MTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Score = 37.7 bits (87), Expect = 0.020
Identities = 27/168 (16%), Positives = 43/168 (25%), Gaps = 74/168 (44%)
Query: 601 DLAVMSEETKRVLER----------------LANMPD---VNIGIISGRTL-ENLMKMVN 640
DL S+ + V R + N P ++ G G+ + EN M
Sbjct: 1634 DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM-- 1691
Query: 641 IEKVTYAGSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVL-L 699
+ DG + KE E + KG+L
Sbjct: 1692 ----IFETI-------VDGKLKTEKIFKEINEHSTSYT------------FRSEKGLLSA 1728
Query: 700 TFHYRETPIERREYIIDRASQ--IFL----------EAGFEPHNALMA 735
T ++ +Q + L G P +A A
Sbjct: 1729 T-----------QF-----TQPALTLMEKAAFEDLKSKGLIPADATFA 1760
Score = 33.5 bits (76), Expect = 0.40
Identities = 46/287 (16%), Positives = 88/287 (30%), Gaps = 106/287 (36%)
Query: 85 RAVFN-AETWKVSHLKMN-GVTL---------EITGIWIGWSG----------LYDLAPD 123
+ V+N A+ +H K G ++ +T + G G +++ D
Sbjct: 1643 QDVWNRAD----NHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVD 1698
Query: 124 ------EVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYYNGCCNGTFW--P-LF-HS 173
++ E + + ++ T F + G + T + P L
Sbjct: 1699 GKLKTEKIFKEINEH----STSYT-------------FRSE-KGLLSATQFTQPALTLME 1740
Query: 174 MPDRAVFNAETWKTYCKVNEE--FA------NCTLNALRNVIKDLDAA-------GKT-- 216
A F E K+ + + FA L +L +V+ +++ G T
Sbjct: 1741 K---AAF--EDLKSKGLIPADATFAGHSLGEYAALASLADVM-SIESLVEVVFYRGMTMQ 1794
Query: 217 NVVPVVWIHDYQLLVAATTIRQVAYDFVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVEL 276
VP + + A +VA F E + R+G R LVE+
Sbjct: 1795 VAVPRDELGRSNYGMIAINPGRVA---ASFSQEA-----LQYVVERVGKR---TGWLVEI 1843
Query: 277 A-----GRTV----HVKALPIGIPFERFVQLAENAPENLKDENLKVI 314
+ ++AL N +K + + +I
Sbjct: 1844 VNYNVENQQYVAAGDLRAL----------DTVTNVLNFIKLQKIDII 1880
Score = 32.7 bits (74), Expect = 0.58
Identities = 22/138 (15%), Positives = 39/138 (28%), Gaps = 47/138 (34%)
Query: 4 LVTAVAPVVIDCKGIWIGWSGLYDLAPDEVIPEADPND----QAPTSGLTSS---QVI-- 54
LV A + D + ++ D+ IP D D + + ++ +I
Sbjct: 432 LVPASDLINKDLVKNNVSFNA-KDIQ----IPVYDTFDGSDLRVLSGSISERIVDCIIRL 486
Query: 55 PVHVDKDEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETW-------KVSHL-KMNGVTLE 106
PV W T S L + +
Sbjct: 487 PVK------------------WE-------TTTQFKATHILDFGPGGASGLGVLTHRNKD 521
Query: 107 ITGIWIGWSGLYDLAPDE 124
TG+ + +G D+ PD+
Sbjct: 522 GTGVRVIVAGTLDINPDD 539
Score = 32.3 bits (73), Expect = 0.85
Identities = 68/415 (16%), Positives = 110/415 (26%), Gaps = 182/415 (43%)
Query: 481 LRMSQLRH--REQQLDV--NHWMN------SFLSSMG------ALDNDDDSDP-LSAK-- 521
R L H E L V + F + A D++ + L K
Sbjct: 6 TRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGKFL 65
Query: 522 -----------------TLQLTLDDFDLYLNNYVDGN----CKLSLILDYDGTLTPLTSH 560
L L L +F+ N Y++GN L+ + D TL
Sbjct: 66 GYVSSLVEPSKVGQFDQVLNLCLTEFE---NCYLEGNDIHALAAKLLQENDTTLV----- 117
Query: 561 PDLAVMSEETKRVLER--LANMPDVNIGIISGRTLENLRHHPDL--AVMSEETKRVLERL 616
+TK +++ A I++ R + + + L AV +
Sbjct: 118 --------KTKELIKNYITAR-------IMAKRPFDK-KSNSALFRAVGEGNAQ------ 155
Query: 617 ANMPDVNIGIISGRTLENLMKMVNIEKVTYA--GSHG--------LEILHPDGTKFVHPV 666
A G G L L+ V +
Sbjct: 156 ----------------------------LVAIFGGQGNTDDYFEELRDLYQTYHVLVGDL 187
Query: 667 PKEYAEKLRQLIKALQD--EVCHDG----AWIENKGVLLTFHYRETPIERREYIIDRAS- 719
K AE L +LI+ D +V G W+EN TP + +Y+ S
Sbjct: 188 IKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPS--------NTPDK--DYL---LSI 234
Query: 720 -----QIFL-----------EAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGV--- 760
I + GF P ++ A+ H G+
Sbjct: 235 PISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKG----------ATGHS----QGLVTA 280
Query: 761 -------DWSERVRIIYAGNEDAM--LALQGIAC--TFRVDSSP--TVKSSWKQG 802
W + A+ L G+ C + S P ++ S +
Sbjct: 281 VAIAETDSWES----FFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENN 331
>2x0d_A WSAF; GT4 family, transferase; HET: MSE; 2.28A {Geobacillus
stearothermophilus} PDB: 2x0f_A* 2x0e_A*
Length = 413
Score = 57.1 bits (137), Expect = 1e-08
Identities = 23/236 (9%), Positives = 60/236 (25%), Gaps = 40/236 (16%)
Query: 271 NMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYTKGLVHR- 329
I N K + K+IL R +
Sbjct: 207 QYFNNKGYNFTDEYFFQPKINTTLK------NYINDKRQKEKIILVYGRPSVKRNAFTLI 260
Query: 330 IKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPI 389
++A + ++K+ E + VG + + +
Sbjct: 261 VEALKIFVQKYDRSNE-WKII----------------------SVGEKHKDIALGKGIHL 297
Query: 390 RYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGM 449
G + E+ A L + S+I + + + E G+ +++ +
Sbjct: 298 NS-LGKLTLEDYADLLKRSSIGISLMISPHPSYPPLEMAHF-----GLRVITNKYENKDL 351
Query: 450 M---HEALLVNPYEIDAAANVLHRALCMPRDERELRMSQLRHREQQLDVNHWMNSF 502
+ + + A L + R++ + + ++ + +
Sbjct: 352 SNWHSNIVSLEQLNPENIAETLVELCMSF-NNRDVDKKESSNMMFYINEFNEFSFI 406
>2x6q_A Trehalose-synthase TRET; biosynthetic protein; 2.20A {Pyrococcus
horikoshii} PDB: 2x6r_A 2xa1_A 2xa2_A* 2xa9_A* 2xmp_A*
Length = 416
Score = 54.7 bits (132), Expect = 7e-08
Identities = 38/220 (17%), Positives = 76/220 (34%), Gaps = 37/220 (16%)
Query: 219 VPVVW-IHDYQLLVAATTIRQVAYDFVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVELA 277
P +W H + ++ + ++F+ +E Y +I + +DRN ++
Sbjct: 148 SPWLWRCH-----IDLSSPNREFWEFLRRFVEKYDR-YIFHLPEYVQPELDRNKAVI--- 198
Query: 278 GRTVHVKALPIGIPFERFVQLAENAPENLK-------DENLKVILGVDRLDYTKGLVHRI 330
+P I + E L+ D +I V R D KG+ I
Sbjct: 199 --------MPPSIDPLSEKNVELKQTEILRILERFDVDPEKPIITQVSRFDPWKGIFDVI 250
Query: 331 KAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIR 390
+ + ++ EK P V L + V + D + + + ++ + +
Sbjct: 251 EIYRKVKEKIPG----VQLLLVGVMAHDDPEGWIYFEKTLRKIGEDYDVKV--------L 298
Query: 391 YIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVAC 430
+ E+ A R S + L +R+G L E +
Sbjct: 299 TNLIGVHAREVNAFQRASDVILQMSIREGFGLTVTEAMWK 338
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta
alpha beta, substrate AS catalysis; 2.10A
{Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Length = 438
Score = 50.0 bits (120), Expect = 2e-06
Identities = 52/216 (24%), Positives = 79/216 (36%), Gaps = 44/216 (20%)
Query: 281 VHVKALPIGIPFERFVQLAENAPENLK-----DENLKVILGVDRLDYTKGLVHRIKAFER 335
+ V + G E + + A E + + KV+ V RL KG IKA
Sbjct: 210 ISV--VSPGADVELYSPGNDRATERSRRELGIPLHTKVVAFVGRLQPFKGPQVLIKAVAA 267
Query: 336 LLEKHPEYVEKVTFLQISVPSRTDVL--EYKALKDEMDQLVGRINGRFSKPNWSPIRYIF 393
L ++ P+ + + PS + Y+ + +E+ + RI RF P
Sbjct: 268 LFDRDPD--RNLRVIICGGPSGPNATPDTYRHMAEELG-VEKRI--RFLDP--------- 313
Query: 394 GCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHEA 453
EL A+YR + I V + LVA E A P + A G + A
Sbjct: 314 --RPPSELVAVYRAADIVAVPSFNESFGLVAMEAQASGT--PVI------AARVGGLPIA 363
Query: 454 -------LLVNPYEIDAAANVLHRALCMPRDERELR 482
LLV+ + A A+ L L D+ E R
Sbjct: 364 VAEGETGLLVDGHSPHAWADALATLL----DDDETR 395
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A
{Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Length = 499
Score = 47.0 bits (112), Expect = 2e-05
Identities = 35/190 (18%), Positives = 63/190 (33%), Gaps = 27/190 (14%)
Query: 308 DENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALK 367
L I+ RLD K ++A+ + E + +T I P + K
Sbjct: 259 RMELPAIIASSRLDQKKNHYGLVEAYVQNKELQDKANLVLTLRGIENPFEDYSRAGQEEK 318
Query: 368 DEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSA----IALVTPLRDGMNLV 423
+ + +++ I+ + +F Q+ELA Y A + +T + L
Sbjct: 319 EILGKIIELIDNN----DCRGKVSMFPLNSQQELAGCYAYLASKGSVFALTSFYEPFGLA 374
Query: 424 AKEYVACQIREPGVLILSP-FAGAGGMMHEA-------LLVNPYEIDAAANVLHRALCMP 475
E +A G+ P G E +LV+P + + A L +A
Sbjct: 375 PVEAMAS-----GL----PAVVTRNGGPAEILDGGKYGVLVDPEDPEDIARGLLKAFESE 425
Query: 476 RDERELRMSQ 485
E +
Sbjct: 426 --ETWSAYQE 433
>3s28_A Sucrose synthase 1; glycosyltransferase, sucrose metabolism, sugar
donar complex rossmann fold, GT-B fold,
glycosyltansferase, UDP-glucose; HET: UDP LCN NHF; 2.80A
{Arabidopsis thaliana} PDB: 3s27_A* 3s29_A*
Length = 816
Score = 46.9 bits (111), Expect = 2e-05
Identities = 39/196 (19%), Positives = 70/196 (35%), Gaps = 35/196 (17%)
Query: 306 LKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPS--RTDVLEY 363
LKD+ ++ + RLD K L ++ + + V S + E
Sbjct: 567 LKDKKKPILFTMARLDRVKNLSGLVEWYGKNTRLRELANLVVVGGDRRKESKDNEEKAEM 626
Query: 364 KALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYR---DSAIALVTP-LRDG 419
K + D +++ ++NG+ R+I + + LYR D+ A V P L +
Sbjct: 627 KKMYDLIEEY--KLNGQ--------FRWISSQMDRVRNGELYRYICDTKGAFVQPALYEA 676
Query: 420 MNLVAKEYVACQIREPGVLILSPFAGA--GGMM------HEALLVNPYEIDAAANVLHRA 471
L E + C G+ P GG ++PY D AA+ L
Sbjct: 677 FGLTVVEAMTC-----GL----PTFATCKGGPAEIIVHGKSGFHIDPYHGDQAADTLADF 727
Query: 472 LCMPRDERELR--MSQ 485
+++ +S+
Sbjct: 728 FTKCKEDPSHWDEISK 743
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside
mannosyltransferase...; GT-B fold,
alpha-mannosyltransferase; HET: GDD; 2.00A
{Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Length = 394
Score = 43.9 bits (104), Expect = 1e-04
Identities = 44/248 (17%), Positives = 76/248 (30%), Gaps = 60/248 (24%)
Query: 261 RRLGSRVDRN--------NMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLK----- 307
R++G+ VD G + LP G+ +RF +
Sbjct: 135 RKIGTEVDVLTYISQYTLRRFKSAFGSHPTFEHLPSGVDVKRFTPATPEDKSATRKKLGF 194
Query: 308 DENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALK 367
+ VI RL KG IKA +++ P+ L + L A
Sbjct: 195 TDTTPVIACNSRLVPRKGQDSLIKAMPQVIAARPD----AQLLIVGSGRYESTLRRLA-- 248
Query: 368 DEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRD-------GM 420
+ + +F G + +++ + I + G+
Sbjct: 249 ---TDVSQNV--KF-----------LGRLEYQDMINTLAAADIFAMPARTRGGGLDVEGL 292
Query: 421 NLVAKEYVACQIREPGVLILSPFAGAGGMMHEA------LLVNPYEIDAAANVLHRALCM 474
+V E AC GV ++ AG G E L+V ++D + +L L
Sbjct: 293 GIVYLEAQAC-----GVPVI---AGTSGGAPETVTPATGLVVEGSDVDKLSELLIELL-- 342
Query: 475 PRDERELR 482
D+ R
Sbjct: 343 --DDPIRR 348
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 42.3 bits (100), Expect = 5e-04
Identities = 17/128 (13%), Positives = 42/128 (32%), Gaps = 17/128 (13%)
Query: 219 VPVVW-IHDYQLLVAATTIRQVAYDFVGFHIEDYCLNFIDC--CCRRLGSRVDRNNMLVE 275
+ +V +H T I + D ++ + + D S N E
Sbjct: 126 IKIVTTLH-------GTDITVLGSDPSLNNLIRFGIEQSDVVTAV----SHSLIN-ETHE 173
Query: 276 LAGRTVHVKALPIGIPFERFVQLAENAP--ENLKDENLKVILGVDRLDYTKGLVHRIKAF 333
L ++ + I + + E E+ K+++ + K + ++AF
Sbjct: 174 LVKPNKDIQTVYNFIDERVYFKRDMTQLKKEYGISESEKILIHISNFRKVKRVQDVVQAF 233
Query: 334 ERLLEKHP 341
+++ +
Sbjct: 234 AKIVTEVD 241
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4
glycosyltransferase, rossmann fold, complex; HET: GDP;
2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Length = 406
Score = 38.4 bits (90), Expect = 0.008
Identities = 37/241 (15%), Positives = 69/241 (28%), Gaps = 53/241 (21%)
Query: 261 RRLGSRVDRN--------NMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLK 312
R ++ +E G +P G+ F A ++ +
Sbjct: 155 RPYHEKIIGRIAVSDLARRWQMEALGSDAVE--IPNGVDVASFAD-APLLDGYPREG--R 209
Query: 313 VILGVDRLDYT-KGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMD 371
+L + R D KG+ + A +L+ + P+ V L + L+++
Sbjct: 210 TVLFLGRYDEPRKGMAVLLAALPKLVARFPD----VEILIVGRGDED------ELREQAG 259
Query: 372 QLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRD-GMNLVAKEYVAC 430
L G + RF G + A+ R + + L +V E +A
Sbjct: 260 DLAGHL--RFL-----------GQVDDATKASAMRSADVYCAPHLGGESFGIVLVEAMAA 306
Query: 431 QIREPGVLILSPFAGAGGMM------HEALLVNPYEIDAAANVLHRALCMPRDERELRMS 484
G +++ + LV + D A L L R
Sbjct: 307 -----GTAVVA--SDLDAFRRVLADGDAGRLVPVDDADGMAAALIGILEDD-QLRA-GYV 357
Query: 485 Q 485
Sbjct: 358 A 358
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase,
lipopolysaccharide biosynthesis, family GT-4,
glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia
coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Length = 374
Score = 38.1 bits (89), Expect = 0.010
Identities = 38/230 (16%), Positives = 82/230 (35%), Gaps = 43/230 (18%)
Query: 281 VHVKALPIGIPFERF-VQLAENAPENLK-----DENLKVILGVDRLDYTKGLVHRIKAFE 334
+ LP GI +R + N+ E + E ++L V KG+ I+A
Sbjct: 162 FQI--LPPGIYPDRKYSEQIPNSREIYRQKNGIKEQQNLLLQVGSDFGRKGVDRSIEALA 219
Query: 335 RLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFG 394
L E T L + + +++AL +++ + + F F
Sbjct: 220 SLPESLRH----NTLLFVVGQDKPR--KFEALAEKLG-VRSNV--HF-----------FS 259
Query: 395 CIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGV-LILSPFAGAGGMMHEA 453
G+ +++ L + + L ++ +V E + G+ ++ + G + +A
Sbjct: 260 --GRNDVSELMAAADLLLHPAYQEAAGIVLLEAITA-----GLPVLTTAVCGYAHYIADA 312
Query: 454 ----LLVNPYEIDAAANVLHRALCMPRDERELRMSQL-RHREQQLDVNHW 498
++ P+ + VL +AL + ++ RH D+
Sbjct: 313 NCGTVIAEPFSQEQLNEVLRKALTQS--PLRMAWAENARHYADTQDLYSL 360
>3qhp_A Type 1 capsular polysaccharide biosynthesis prote (CAPJ); rossmann
fold, glycosyltransferase, transferase; 1.50A
{Helicobacter pylori}
Length = 166
Score = 36.4 bits (85), Expect = 0.012
Identities = 29/196 (14%), Positives = 54/196 (27%), Gaps = 42/196 (21%)
Query: 313 VILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISV---PSRTDVLEYKALKDE 369
I V R K IKA L + + V L + P K +K
Sbjct: 4 KIAMVGRYSNEKNQSVLIKAV-ALSKYKQDIV-----LLL-KGKGPDE------KKIKLL 50
Query: 370 MDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEYVA 429
+L ++ FG + EL + + + + + + E ++
Sbjct: 51 AQKL--------------GVKAEFGFVNSNELLEILKTCTLYVHAANVESEAIACLEAIS 96
Query: 430 CQIREPGVLILSPFAGAGGMM----HEALLVNPYEIDAAANVLHRALCMPRDERELRMSQ 485
G++ + + E L P + + L ERE RM
Sbjct: 97 V-----GIVPVIANSPLSATRQFALDERSLFEPNNAKDLSAKIDWWLENK-LERE-RMQN 149
Query: 486 L-RHREQQLDVNHWMN 500
+ + +
Sbjct: 150 EYAKSALNYTLENSVI 165
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU
proteins, viral protein,transferase; 2.31A {Paramecium
bursaria chlorella virus NY} PDB: 3oy7_A*
Length = 413
Score = 36.7 bits (84), Expect = 0.027
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 7/123 (5%)
Query: 308 DENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALK 367
+ + L ++R K L + A R + K+P+ KV FL S L AL+
Sbjct: 181 YNDDVLFLNMNRNTARKRLDIYVLAAARFISKYPD--AKVRFLCNSHHESKFDLHSIALR 238
Query: 368 DEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDGMNLVAKEY 427
+ + V + +K I + E + +Y + + +G L + E
Sbjct: 239 ELVASGVDNVFTHLNK-----IMINRTVLTDERVDMMYNACDVIVNCSSGEGFGLCSAEG 293
Query: 428 VAC 430
Sbjct: 294 AVL 296
>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex,
protein glycosyl carbohydrate-deficient glycoprotein
syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP:
c.108.1.10 PDB: 2fuc_A*
Length = 262
Score = 36.1 bits (82), Expect = 0.033
Identities = 14/54 (25%), Positives = 22/54 (40%), Gaps = 7/54 (12%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHH 599
+ D DGTLTP + E L++L + V IG++ G +
Sbjct: 16 CLFDVDGTLTPARQK-----IDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQ 62
>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310,
phosphatase, PFAM PF03332, H superfamily, jaecken
disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB:
2q4r_A
Length = 246
Score = 35.3 bits (80), Expect = 0.062
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 543 KLSLIL-DYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPD 601
+L L D DGTLT +++E L++L + IG++ G E ++
Sbjct: 5 GPALCLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQLG 57
Query: 602 LAVMSE 607
V+ +
Sbjct: 58 NDVVEK 63
>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282,
MCSG, PSI-2, haloacid dehalogenase-like HY structural
genomics; 2.45A {Bacillus subtilis subsp}
Length = 289
Score = 34.8 bits (80), Expect = 0.078
Identities = 36/257 (14%), Positives = 72/257 (28%), Gaps = 45/257 (17%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDL 602
+ + D+D T P T E + LE+ + ++ IG ++G ++E++
Sbjct: 23 YI-VFCDFDETYFPHTIDEQKQQDIYELEDYLEQKSKDGELIIGWVTGSSIESIL----- 76
Query: 603 AVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKF 662
+ R I S ++TY H
Sbjct: 77 --------DKMGRG-KFRYFPHFIASD----------LGTEITYFSEHNFGQQDNKWNSR 117
Query: 663 V-HPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREYIIDRASQI 721
+ KE EKL + + + + + + F+Y+E + + +I
Sbjct: 118 INEGFSKEKVEKLVKQLHENHNILLNPQTQLGKSRYKHNFYYQEQDEINDKKNLLAIEKI 177
Query: 722 FLEAGFEPHNALMAIEAKPPVKWDQG-------RAS----IHILRTMYGVDWSERVRIIY 770
E + + D + + Y ++ I
Sbjct: 178 CEE--YGVSVNINRCNPLAGDPEDSYDVDFIPIGTGKNEIVTFMLEKYNLNTER---AIA 232
Query: 771 AG---NEDAMLALQGIA 784
G N+ ML G
Sbjct: 233 FGDSGNDVRMLQTVGNG 249
>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics,
isomerase, structural genomics consortium, SGC; 1.85A
{Trypanosoma brucei} PDB: 2i54_A* 2i55_A*
Length = 246
Score = 33.7 bits (76), Expect = 0.18
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 6/62 (9%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
L+ D DGTLT P ++E + +++R +G + G V+
Sbjct: 7 LLFDVDGTLT-----PPRLCQTDEMRALIKRARG-AGFCVGTVGGSDFAKQVEQLGRDVL 60
Query: 606 SE 607
++
Sbjct: 61 TQ 62
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 33.8 bits (77), Expect = 0.24
Identities = 17/84 (20%), Positives = 27/84 (32%), Gaps = 20/84 (23%)
Query: 655 LHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREY- 713
L P G+ +E E + + AWIE K ++ E+ +
Sbjct: 13 LVPRGSHMF--KREEIIEMANKDFEK---------AWIETKDLIKAKKINESYPRIKPVF 61
Query: 714 --------IIDRASQIFLEAGFEP 729
I+ Q +L GFE
Sbjct: 62 GKTHPVNDTIENLRQAYLRMGFEE 85
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 33.8 bits (77), Expect = 0.25
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 20/99 (20%)
Query: 650 HGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIE 709
H L P G+ +E E + + AWIE K ++ E+
Sbjct: 8 HHSSGLVPRGSHMFKR--EEIIEMANKDFEK---------AWIETKDLIKAKKINESYPR 56
Query: 710 RREY---------IIDRASQIFLEAGFEPHNALMAIEAK 739
+ I+ Q +L GFE + + ++ +
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDER 95
>2rdm_A Response regulator receiver protein; structural genomics, unknown
function, PSI-2, protein struct initiative; HET: MSE;
1.76A {Sinorhizobium medicae}
Length = 132
Score = 32.2 bits (74), Expect = 0.25
Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 14/97 (14%)
Query: 397 GQEELAALYRDSAI-ALVTPLR--DGMNLVAKEYVACQIRE--PG--VLILSPFA----G 445
G + + L +AI +VT +R + VA RE P ++ +S A
Sbjct: 38 GAKAIEMLKSGAAIDGVVTDIRFCQPPDGWQ---VARVAREIDPNMPIVYISGHAALEWA 94
Query: 446 AGGMMHEALLVNPYEIDAAANVLHRALCMPRDERELR 482
+ G+ +L P+ + + L
Sbjct: 95 SNGVPDSIILEKPFTSAQLITAVSQLLNAREGHHHHH 131
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 32.8 bits (74), Expect = 0.29
Identities = 20/128 (15%), Positives = 39/128 (30%), Gaps = 33/128 (25%)
Query: 266 RVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYTKG 325
+V+ ++ E+ +V P R V E + K + VI
Sbjct: 121 QVNYSS---EVKENSVDSDDKAKVPPLIRIVSGLELSDTKQKGKKFLVI----------- 166
Query: 326 LVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTDVLEYKALKDEMDQLVGRINGRFSKPN 385
A+E P + E + +P + D + V +N + +
Sbjct: 167 ------AYE------P-F-ENIAI---ELPPNEILFSENNDMDNNNDGVDELNKKCT--F 207
Query: 386 WSPIRYIF 393
W I ++
Sbjct: 208 WDAISKLY 215
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 32.3 bits (74), Expect = 0.59
Identities = 26/140 (18%), Positives = 39/140 (27%), Gaps = 19/140 (13%)
Query: 2 GGLVTAV-------APVVIDCKGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVI 54
VT A I C G W+ L P + + + QA ++
Sbjct: 179 DDGVTIETADGEYQAKKAIVCAGTWV--KDLLPELPVQPVRKVFAWYQADGRYSVKNKFP 236
Query: 55 PVHVDKDEFEAYY--------NGCCNGTFWPLFHSMPDRAVFNAETWKVSHLK--MNGVT 104
+ + YY + HS +R F S + V
Sbjct: 237 AFTGELPNGDQYYGFPAENDALKIGKHNGGQVIHSADERVPFAEVVSDGSEAFPFLRNVL 296
Query: 105 LEITGIWIGWSGLYDLAPDE 124
I G + YD +PDE
Sbjct: 297 PGIGCCLYGAACTYDNSPDE 316
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 32.3 bits (73), Expect = 0.70
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 20/99 (20%)
Query: 650 HGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIE 709
H L P G+ +E E + + AWIE K ++ E+
Sbjct: 8 HHSSGLVPRGSHMFKR--EEIIEMANKDFEK---------AWIETKDLIKAKKINESYPR 56
Query: 710 RREY---------IIDRASQIFLEAGFEPHNALMAIEAK 739
+ I+ Q +L GFE + + ++ +
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDER 95
>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD
superfamily, structural genomi structural
genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus
horikoshii} SCOP: c.108.1.10
Length = 231
Score = 31.3 bits (72), Expect = 0.88
Identities = 25/158 (15%), Positives = 51/158 (32%), Gaps = 46/158 (29%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLR----- 597
K + +D DGT+T +P+ + E+ + R ++ + I +++G T++
Sbjct: 4 KA-ISIDIDGTIT----YPNRMI-HEKALEAIRRAESL-GIPIMLVTGNTVQFAEAASIL 56
Query: 598 --------------------------HHPDLAVMSEETKRVLERLAN--MPDVNIGIISG 629
+ + +E KR + MPD G++
Sbjct: 57 IGTSGPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIM 116
Query: 630 RTLENLMKMVNIEK------VTYAGSHGLEILHPDGTK 661
R N+ + I V + + P K
Sbjct: 117 RETINVETVREIINELNLNLVAVDSGFAIHVKKPWINK 154
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 31.9 bits (72), Expect = 1.0
Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 20/99 (20%)
Query: 650 HGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIE 709
H L P G+ +E E + + AWIE K ++ E+
Sbjct: 8 HHSSGLVPRGSHMFKR--EEIIEMANKDFEK---------AWIETKDLIKAKKINESYPR 56
Query: 710 RREY---------IIDRASQIFLEAGFEPHNALMAIEAK 739
+ I+ Q +L GFE + + ++ +
Sbjct: 57 IKPVFGKTHPVNDTIENLRQAYLRMGFEEYINPVIVDER 95
>3au8_A 1-deoxy-D-xylulose 5-phosphate reductoisomerase; NADPH binding;
HET: NDP; 1.86A {Plasmodium falciparum} PDB: 3au9_A*
3aua_A*
Length = 488
Score = 31.9 bits (73), Expect = 1.0
Identities = 10/63 (15%), Positives = 25/63 (39%), Gaps = 5/63 (7%)
Query: 596 LRHHPDLAVMSEETK--RVLERLANMPDVNIGIISGRT-LENLMKMVNIEKVTYA--GSH 650
P+ + +++ + E + N+ D I+ G ++ + +I+K+
Sbjct: 126 REFLPEYLCIHDKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQ 185
Query: 651 GLE 653
GL
Sbjct: 186 GLY 188
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural
genomics, PSI, protein struct initiative; 1.80A
{Archaeoglobus fulgidus} SCOP: c.87.1.8
Length = 177
Score = 30.6 bits (70), Expect = 1.3
Identities = 25/155 (16%), Positives = 52/155 (33%), Gaps = 38/155 (24%)
Query: 278 GRTVHVKALPIGIPFERFVQLAENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLL 337
G H + P+ +F + D L V+R+ K + +++ F++L
Sbjct: 2 GHHHHHHSHPVET--SKF------KFKCYGD----FWLSVNRIYPEKRIELQLEVFKKLQ 49
Query: 338 EKHPEYVEKVTFLQI--SVPSRTDVLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGC 395
++ L I + ++ ++ N ++++ G
Sbjct: 50 DEK---------LYIVGWFSKGD---HAERYARKIMKIAP--------DN---VKFL-GS 85
Query: 396 IGQEELAALYRDSAIALVTPLRDGMNLVAKEYVAC 430
+ +EEL LY L T + L E +A
Sbjct: 86 VSEEELIDLYSRCKGLLCTAKDEDFGLTPIEAMAS 120
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding,
transcription regulation, transcription regula; HET:
MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Length = 206
Score = 30.5 bits (69), Expect = 1.8
Identities = 6/25 (24%), Positives = 16/25 (64%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R +P++R++ +++ A ++F G
Sbjct: 12 RLSPLKRKQQLMEIALEVFARRGIG 36
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A
{Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B
1h8c_A
Length = 84
Score = 28.7 bits (65), Expect = 1.8
Identities = 15/83 (18%), Positives = 26/83 (31%), Gaps = 14/83 (16%)
Query: 657 PDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREYIID 716
P G KL+ + ++ +KG + + RR+
Sbjct: 15 PSGEFLERRFLAS--NKLQIVF-----------DFVASKGFPWDEYKLLSTFPRRDVTQL 61
Query: 717 RASQIFLEAGFEPHNALMAIEAK 739
++ LE P L +EAK
Sbjct: 62 DPNKSLLEVKLFPQETLF-LEAK 83
>2qib_A TETR-family transcriptional regulator; HTH DNA binding, STRU
genomics, MCSG, PSI-2, protein structure initiative;
HET: P6G; 1.70A {Streptomyces coelicolor A3}
Length = 231
Score = 30.6 bits (69), Expect = 1.8
Identities = 7/25 (28%), Positives = 11/25 (44%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R ERR+ +I A +F +
Sbjct: 8 RMGVEERRQQLIGVALDLFSRRSPD 32
>2c0g_A ERP29 homolog, windbeutel protein; PDI-dbeta, PDI, protein
disulfide isomerase, PIPE, dorsal-ventral patterning,
chaperone, WIND mutants; 1.75A {Drosophila melanogaster}
SCOP: a.71.1.1 c.47.1.7 PDB: 1ovn_A 2c0f_A 2c1y_A 2c0e_A
Length = 248
Score = 30.4 bits (68), Expect = 2.2
Identities = 13/141 (9%), Positives = 39/141 (27%), Gaps = 23/141 (16%)
Query: 239 VAYDFVGFHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQL 298
V D F+ R E+ + + +
Sbjct: 110 VQLPSHVDVTLDNLKAFVSANTPLYIGRDGCIKEFNEVL---------------KNYANI 154
Query: 299 AENAPENLKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRT 358
+ L ++ + + + + ++ E +++E+ T R
Sbjct: 155 PDAEQLKLIEKLQAKQEQLTDPEQQQNARAYLIYMRKIHEVGYDFLEEET-------KRL 207
Query: 359 DVLEYKALKDE-MDQLVGRIN 378
L+ + + ++L+ ++N
Sbjct: 208 LRLKAGKVTEAKKEELLRKLN 228
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1,
structural genomics, PS protein structure initiative;
2.40A {Rhodococcus}
Length = 203
Score = 30.0 bits (68), Expect = 2.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R R + ++D A +F + GF
Sbjct: 9 RLPRAVREQQMLDAAVDVFSDRGFH 33
>3c8c_A Methyl-accepting chemotaxis protein; structural genomics, unknown
function, uncharacterized protein; 1.50A {Vibrio
cholerae o1 biovar eltor str}
Length = 240
Score = 30.3 bits (68), Expect = 2.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 3/80 (3%)
Query: 624 IGIISG-RTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQ 682
+G I +L L ++VN K+ AG + I+ DGT HP + + + + + +
Sbjct: 135 LGSIFYDVSLAELAELVNEVKLFDAGY--VFIVSEDGTTIAHPKKEFNGKPMSEFLGESK 192
Query: 683 DEVCHDGAWIENKGVLLTFH 702
V I K ++F
Sbjct: 193 INVDTHQVIINGKPYAVSFS 212
>3qqa_A CMER; alpha-helical, helix-turn-helix, DNA-binding, transcription
regulation, transcription repressor, drug binding,
transcri; HET: TCH; 2.20A {Campylobacter jejuni} PDB:
3hgy_A* 3qps_A* 2qco_A 3hgg_A*
Length = 216
Score = 29.8 bits (67), Expect = 2.5
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+ + R+E I A ++FL G++
Sbjct: 14 SQKVLARQEKIKAVALELFLTKGYQ 38
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, hydrolase; 2.41A {Chloroflexus
aurantiacus}
Length = 72
Score = 27.8 bits (62), Expect = 2.6
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 619 MPDVNIGIISGRTLENLMKMVNIEKVTYA 647
M + I ++ GR+ E ++ ++ A
Sbjct: 1 MLLLRITMLEGRSTEQKAEL--ARALSAA 27
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus
aureus}
Length = 63
Score = 27.7 bits (62), Expect = 2.8
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 619 MPDVNIGIISGRTLENLMKMVNIEKVTYA 647
MP VN+ ++ GR+ E L + + +VT A
Sbjct: 3 MPIVNVKLLEGRSDEQLKNL--VSEVTDA 29
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded
beta helix, demethylase, oxygenase, SGC, STR genomics,
structural genomics consortium, oxidoreductase; HET: MLY
ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A*
2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A*
3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A*
2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Length = 381
Score = 30.0 bits (66), Expect = 3.2
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 648 GSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYR 704
+ + LH K + VP E+ ++L +L K + L
Sbjct: 215 DLYSINYLHFGEPKSWYSVPPEHGKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLM 271
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 29.1 bits (66), Expect = 4.0
Identities = 22/115 (19%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 546 LILDYDGTLTP--LTSHPDLAVMSEETKRV-------LERLANMPDVNIGIISGRTLENL 596
LI D DG + + EE K ++ L N + I II+GR
Sbjct: 28 LICDVDGVFSDGLIYMGNQ----GEELKTFHTRDGYGVKALMNA-GIEIAIITGRR---- 78
Query: 597 RHHPDLAVMSEETKRVLERLANMPDVNIGIIS-GRTLENLMKMVNI--EKVTYAG 648
S+ + ++ L + + G + ++ + + I E+ Y G
Sbjct: 79 ---------SQIVENRMKAL-GISLIYQGQDDKVQAYYDICQKLAIAPEQTGYIG 123
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal;
trans-3-chloroacrylic acid dehalogenase, CAAD,
dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas
pavonaceae} PDB: 3ej3_A 1s0y_A 3ej7_A
Length = 76
Score = 27.4 bits (61), Expect = 4.1
Identities = 13/48 (27%), Positives = 19/48 (39%), Gaps = 6/48 (12%)
Query: 580 MPDVNIGIISGRTLENLRHHPDLAVMSEETKRVLERLANMPDVNIGII 627
MP ++ + GRT E R +S RV+ P NI +
Sbjct: 1 MPMISCDMRYGRTDEQKRA------LSAGLLRVISEATGEPRENIFFV 42
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription
regulation, TETR, DNA-binding transcription; 2.90A
{Pseudomonas aeruginosa}
Length = 210
Score = 29.0 bits (65), Expect = 4.2
Identities = 9/25 (36%), Positives = 15/25 (60%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+E + R+ I+D A ++FLE G
Sbjct: 6 KEESQKTRDGILDAAERVFLEKGVG 30
>2hyt_A TETR-family transcriptional regulator; structural genomics, center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Length = 197
Score = 29.3 bits (66), Expect = 4.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R E R ++ A ++F E G+
Sbjct: 7 RAEMEETRATLLATARKVFSERGYA 31
>2wyo_A Glutathione synthetase; ligase, ATP-grAsp; HET: GSH; 3.15A
{Trypanosoma brucei}
Length = 562
Score = 29.5 bits (65), Expect = 4.7
Identities = 7/81 (8%), Positives = 21/81 (25%), Gaps = 11/81 (13%)
Query: 625 GIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVH--------PVPK---EYAEK 673
++ LE + + G+ + G V + +
Sbjct: 7 HMVLKLLLELGAERYAEQFAAKCHELGMVMKESAGPGRVPVPVTLQPSMISRGEFGTLCC 66
Query: 674 LRQLIKALQDEVCHDGAWIEN 694
++ L D + ++ +
Sbjct: 67 MQPLWNEAVDNTARNFTFLRD 87
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 29.1 bits (66), Expect = 4.7
Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 31/115 (26%)
Query: 546 LILDYDGTLT--PLTSHPDLAVMSEETKRV-------LERLANMPDVNIGIISGRTLENL 596
LI D DG L+ L E K L+ L + + II+
Sbjct: 22 LICDVDGVLSDGLLHIDNH----GNELKSFHVQDGMGLKLLMAA-GIQVAIITTAQ---- 72
Query: 597 RHHPDLAVMSEETKRVLERLANMPDVNIGIIS-GRTLENLMKMVNI--EKVTYAG 648
+ +E+L + G + ++L K + + ++ Y G
Sbjct: 73 ---------NAVVDHRMEQL-GITHYYKGQVDKRSAYQHLKKTLGLNDDEFAYIG 117
>3rza_A Tripeptidase; phosphorylase/hydrolase-like, structural genomics,
joint CEN structural genomics, JCSG, protein structure
initiative; HET: CIT PG4 PGE; 2.10A {Staphylococcus
aureus subsp}
Length = 396
Score = 29.2 bits (66), Expect = 5.0
Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 19/110 (17%)
Query: 621 DVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKA 680
NIG G + N + ++V E D + K + + + +
Sbjct: 245 TANIGKFHGGSATN----IVADEVILEA----EARSHDPERI-----KTQVKHMTDVFET 291
Query: 681 LQDEVCHDGAWIENKGVLLTFHYRETPIERREYIIDRASQIFLEAGFEPH 730
E G E V + Y I E ++ A + G +
Sbjct: 292 TASE---LGGKAE---VTVEQSYPGFKINDNEAVVKIAQESARNLGLSAN 335
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics,
IDP02616, csgid, DNA-binding, transcription,
transcription regulation; 1.56A {Salmonella enterica
subsp} PDB: 3bcg_A 2qop_A
Length = 220
Score = 29.0 bits (65), Expect = 5.1
Identities = 7/25 (28%), Positives = 16/25 (64%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
++ +E R++I+D A ++F + G
Sbjct: 9 KQQALETRQHILDVALRLFSQQGVS 33
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix,
DNA-binding, transcription regulation; 2.22A
{Streptomyces coelicolor}
Length = 231
Score = 29.2 bits (65), Expect = 5.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+ +R E I+D A ++ E G
Sbjct: 18 AQAKQQREEAILDAARELGTERGIR 42
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 28.7 bits (65), Expect = 5.6
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 31/115 (26%)
Query: 546 LILDYDGTLT--PLTSHPDLAVMSEETKRV-------LERLANMPDVNIGIISGRTLENL 596
+I D DG LT L + E K ++ L + D+ + ++SGR
Sbjct: 11 VITDVDGVLTDGQLHYDAN----GEAIKSFHVRDGLGIKMLMDA-DIQVAVLSGRD---- 61
Query: 597 RHHPDLAVMSEETKRVLERLANMPDVNIGIIS-GRTLENLMKMVNI--EKVTYAG 648
S +R + L + +G + +LMK + E+ Y G
Sbjct: 62 ---------SPILRRRIADL-GIKLFFLGKLEKETACFDLMKQAGVTAEQTAYIG 106
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A
{Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 29.4 bits (66), Expect = 6.0
Identities = 20/141 (14%), Positives = 37/141 (26%), Gaps = 20/141 (14%)
Query: 3 GLVTAVAPVVIDCKGIWIG----WSGLY-DLAPDE-----VIPEADPNDQAPTSGLTSSQ 52
G V ++ G+W G+ P + V + + G +
Sbjct: 237 GTRVEVGEKLVVAAGVWSNRLLNPLGIDTFSRPKKRMVFRVSASTEGLRRIMREGDLAGA 296
Query: 53 VIPVHVDKDEFEAYYNGCCNGTFWPLFHSMPDRAVFNAETWKVSH-LKMNGVT------- 104
P + + G+FW R E + +
Sbjct: 297 GAPPLIILPKRVLVRPAPREGSFWVQLSDNLGRPFALEEDPQPEEHYYSLAILPILSLYL 356
Query: 105 --LEITGIWIGWSGLYDLAPD 123
+ GW+G YD++ D
Sbjct: 357 PQFQDAYPSGGWAGHYDISFD 377
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural
genomics, joint center for structural genomics; HET:
MSE; 2.35A {Haemophilus influenzae}
Length = 188
Score = 28.5 bits (64), Expect = 6.9
Identities = 4/25 (16%), Positives = 8/25 (32%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R+ + E I ++ G
Sbjct: 3 RQAKTDLAEQIFSATDRLMAREGLN 27
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf
transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB:
3vox_A 3vok_A*
Length = 189
Score = 28.5 bits (63), Expect = 7.2
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 707 PIERREYIIDRASQIFLEAGFE 728
E+R + D F F
Sbjct: 10 SDEKRNRVYDACLNEFQTHSFH 31
>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily,
cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10
PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A*
2b1r_A* 2d2v_A*
Length = 244
Score = 28.7 bits (65), Expect = 7.3
Identities = 10/53 (18%), Positives = 17/53 (32%), Gaps = 8/53 (15%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH 598
LI D D T + L E + + + +GR+ + R
Sbjct: 6 LISDLDNTW--VGDQQAL-----EHLQEYLGDRR-GNFYLAYATGRSYHSARE 50
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1,
inhibitor, lysine specific HI demethylase; HET: K0I;
1.86A {Homo sapiens} PDB: 2xue_A*
Length = 510
Score = 29.0 bits (64), Expect = 7.3
Identities = 6/45 (13%), Positives = 10/45 (22%)
Query: 648 GSHGLEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWI 692
+ I G V + Y E + + W
Sbjct: 256 NFCSVNINIGPGDCEWFAVHEHYWETISAFCDRHGVDYLTGSWWP 300
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR;
helix-turn-helix, TETR family, repressor; 1.33A
{Staphylococcus epidermidis} PDB: 2zcn_A
Length = 192
Score = 28.3 bits (63), Expect = 7.3
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
++ IID A +F E G++
Sbjct: 2 HHHHHHMKDKIIDNAITLFSEKGYD 26
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump,
transcription regulation, transcriptional repressor, DNA
binding; 2.00A {Stenotrophomonas maltophilia} PDB:
3p9t_A*
Length = 219
Score = 28.5 bits (64), Expect = 7.5
Identities = 9/25 (36%), Positives = 11/25 (44%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+E RE I+D A F E G
Sbjct: 6 KEDTQATREGILDAAEACFHEHGVA 30
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO
protein structure initiative, southeast collaboratory
for S genomics; 2.40A {Aquifex aeolicus}
Length = 162
Score = 27.8 bits (63), Expect = 8.1
Identities = 23/115 (20%), Positives = 40/115 (34%), Gaps = 31/115 (26%)
Query: 546 LILDYDGTLTP--LTSHPDLAVMSEETKRV-------LERLANMPDVNIGIISGRTLENL 596
LI+D DG LT L E K ++ L M + + +ISGR
Sbjct: 12 LIMDIDGVLTDGKLYYTEH----GETIKVFNVLDGIGIKLLQKM-GITLAVISGRD---- 62
Query: 597 RHHPDLAVMSEETKRVLERLANMPDVNIGIIS-GRTLENLMKMVNI--EKVTYAG 648
S L+ L + ++ G E + + ++ E++ + G
Sbjct: 63 ---------SAPLITRLKEL-GVEEIYTGSYKKLEIYEKIKEKYSLKDEEIGFIG 107
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein
structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 28.3 bits (64), Expect = 8.4
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 31/115 (26%)
Query: 546 LILDYDGTLT--PLTSHPDLAVMSEETKRV-------LERLANMPDVNIGIISGRTLENL 596
+ D DG LT L D E K ++ L V IISGR
Sbjct: 22 AVFDVDGVLTDGRLYFMED----GSEIKTFNTLDGQGIKMLIAS-GVTTAIISGRK---- 72
Query: 597 RHHPDLAVMSEETKRVLERLANMPDVNIGIIS-GRTLENLMKMVNI--EKVTYAG 648
+ +R + L + + G L+ L+ + + E+V Y G
Sbjct: 73 ---------TAIVERRAKSL-GIEHLFQGREDKLVVLDKLLAELQLGYEQVAYLG 117
>3cdl_A Transcriptional regulator AEFR; APC88582, TETR, pseudomonas
syringae PV. tomato STR. DC3000, structural genomics,
PSI-2; HET: MSE; 2.36A {Pseudomonas syringae PV}
Length = 203
Score = 28.0 bits (63), Expect = 8.5
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
++RE I+ A F + GFE
Sbjct: 9 QKRESIVQAAIAEFGDRGFE 28
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural
genomics, midwest center for structura genomics, protein
structure initiative; 1.85A {Streptococcus mutans}
Length = 217
Score = 28.5 bits (63), Expect = 8.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
E+R I+ A +F + +
Sbjct: 26 EKRNKILQVAKDLFSDKTYF 45
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr;
TERT family, transcriptional repressor, DNA-binding;
HET: RF1; 1.85A {Mycobacterium tuberculosis}
Length = 255
Score = 28.3 bits (63), Expect = 8.7
Identities = 4/25 (16%), Positives = 9/25 (36%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R + +R I+ A + +
Sbjct: 38 RPSGDDRELAILATAENLLEDRPLA 62
>3c2b_A Transcriptional regulator, TETR family; structural genomics,
APC5923, PSI-2, PR structure initiative; 2.10A
{Agrobacterium tumefaciens str}
Length = 221
Score = 28.1 bits (63), Expect = 9.1
Identities = 5/20 (25%), Positives = 13/20 (65%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
R+ ++D+A ++ +E G +
Sbjct: 15 PRQNAVLDQALRLLVEGGEK 34
>3ljl_A Transcriptional regulator LUXT; structural genomics, PSI-2, protein
structure initiative, MI center for structural genomics,
MCSG; HET: MES; 3.20A {Vibrio parahaemolyticus}
Length = 156
Score = 27.6 bits (61), Expect = 9.2
Identities = 5/25 (20%), Positives = 10/25 (40%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+E + I+D L G++
Sbjct: 9 KEDTEITIQKIMDAVVDQLLRLGYD 33
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation,
TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A*
2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Length = 210
Score = 28.2 bits (63), Expect = 9.3
Identities = 8/25 (32%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+E E R II+ A + F + G
Sbjct: 6 KEEAQETRAQIIEAAERAFYKRGVA 30
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix,
TETR fold, structural genomics, PSI, prote structure
initiative; HET: MSE; 1.52A {Rhodococcus SP}
Length = 214
Score = 27.9 bits (62), Expect = 9.6
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+ T + R I+D A + F +
Sbjct: 34 KRTAEQSRSLIVDAAGRAFATRPYR 58
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0515 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 13,307,689
Number of extensions: 861280
Number of successful extensions: 2520
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2460
Number of HSP's successfully gapped: 118
Length of query: 808
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 707
Effective length of database: 3,881,772
Effective search space: 2744412804
Effective search space used: 2744412804
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (27.8 bits)