RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2719
(808 letters)
>d1uqta_ c.87.1.6 (A:) Trehalose-6-phosphate synthase, OtsA
{Escherichia coli [TaxId: 562]}
Length = 456
Score = 270 bits (690), Expect = 8e-83
Identities = 139/448 (31%), Positives = 205/448 (45%), Gaps = 65/448 (14%)
Query: 100 MNGVTLEITGIWIGWSGLYDLAPDEVIPEADPNDQAPTSGLTSSQVIPVHVDKDEFEAYY 159
+ G G+W GWSG + N ++ + + + YY
Sbjct: 27 ILGALKAAGGLWFGWSGETGNEDQPLKKVKKGN----------ITWASFNLSEQDLDEYY 76
Query: 160 NGCCNGTFWPLFHSMPDRAVFNAETWKTYCKVNEEFANCTLNALRNVIKDLDAAGKTNVV 219
N N WP FH D F W Y +VN A+ L +++D D
Sbjct: 77 NQFSNAVLWPAFHYRLDLVQFQRPAWDGYLRVNALLAD----KLLPLLQDDD-------- 124
Query: 220 PVVWIHDYQLLVAATTIRQ----------------------------------VAYDFVG 245
++WIHDY LL A +R+ YD +G
Sbjct: 125 -IIWIHDYHLLPFAHELRKRGVNNRIGFFLHIPFPTPEIFNALPTYDTLLEQLCDYDLLG 183
Query: 246 FHIEDYCLNFIDCCCRRLGSRVDRNNMLVELAGRTVHVKALPIGIPFERFVQLAENAPEN 305
F E+ L F+DC R+ G+ + PIGI + + A
Sbjct: 184 FQTENDRLAFLDCLSNLTRVTT-RSAKSHTAWGKAFRTEVYPIGIEPKEIAKQAAGPLPP 242
Query: 306 ------LKDENLKVILGVDRLDYTKGLVHRIKAFERLLEKHPEYVEKVTFLQISVPSRTD 359
+ +N++ I V+RLDY+KGL R A+E LLEK+P++ K+ + QI+ SR D
Sbjct: 243 KLAQLKAELKNVQNIFSVERLDYSKGLPERFLAYEALLEKYPQHHGKIRYTQIAPTSRGD 302
Query: 360 VLEYKALKDEMDQLVGRINGRFSKPNWSPIRYIFGCIGQEELAALYRDSAIALVTPLRDG 419
V Y+ ++ +++ GRING++ + W+P+ Y+ ++ L ++R S + LVTPLRDG
Sbjct: 303 VQAYQDIRHQLENEAGRINGKYGQLGWTPLYYLNQHFDRKLLMKIFRYSDVGLVTPLRDG 362
Query: 420 MNLVAKEYVACQI-REPGVLILSPFAGAGGMMHEALLVNPYEIDAAANVLHRALCMPRDE 478
MNLVAKEYVA Q PGVL+LS FAGA + AL+VNPY+ D A L RAL M E
Sbjct: 363 MNLVAKEYVAAQDPANPGVLVLSQFAGAANELTSALIVNPYDRDEVAAALDRALTMSLAE 422
Query: 479 RELRMSQLRHREQQLDVNHWMNSFLSSM 506
R R +++ + D+NHW F+S +
Sbjct: 423 RISRHAEMLDVIVKNDINHWQECFISDL 450
>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related
protein {Archaeon Thermoplasma acidophilum [TaxId:
2303]}
Length = 229
Score = 80.0 bits (196), Expect = 2e-17
Identities = 38/249 (15%), Positives = 69/249 (27%), Gaps = 49/249 (19%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
+ LDYDGTL P+ +P+ + ++ L D I++GR+ E + L +
Sbjct: 3 IFLDYDGTLVPIIMNPEESYADAGLLSLISDLKERFDT--YIVTGRSPEEISRFLPLDIN 60
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
HG + +
Sbjct: 61 ----------------------------------------MICYHGACSKINGQIVYNNG 80
Query: 666 VPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREYIIDRASQIFLEA 725
+ R G I K + + +H + + + R +I
Sbjct: 81 SDRFLGVFDRIYEDTRSWVSDFPGLRIYRKNLAVLYHLGLMGADMKPKLRSRIEEIARIF 140
Query: 726 GFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGNEDAMLALQGIAC 785
G E + M IE + P ++G A + + ++A A
Sbjct: 141 GVETYYGKMIIELRVP-GVNKGSAIRSVR------GERPAIIAGDDATDEAAFEANDDAL 193
Query: 786 TFRVDSSPT 794
T +V T
Sbjct: 194 TIKVGEGET 202
>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131
{Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 260
Score = 38.4 bits (88), Expect = 0.002
Identities = 42/251 (16%), Positives = 72/251 (28%), Gaps = 19/251 (7%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
L D DGTL + + T LE + I I +GR + + +L
Sbjct: 4 LFFDIDGTLV----SFETHRIPSSTIEALEAAHAK-GLKIFIATGRPKAIINNLSELQDR 58
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
+ + A I + +K + + G+ + +
Sbjct: 59 NLIDGYITMNGAYCFVGEEVIYKSAIPQEEVKAMAA----FCEKKGVPCIFVEEHNISVC 114
Query: 666 VPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREYIIDRASQIFLEA 725
P E +K+ + NK V + TP E + I
Sbjct: 115 QPNEMVKKIFYDFLHVNVIPTVSFEEASNKEV-----IQMTPFITEEEEKEVLPSIPTCE 169
Query: 726 GFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGNEDAMLALQGIAC 785
+ A + AK K I + +G+ E + GN+ +ML I
Sbjct: 170 IGRWYPAFADVTAKGDTKQ----KGIDEIIRHFGIKLEETMSFGDGGNDISMLRHAAIGV 225
Query: 786 TFRVDSSPTVK 796
+ VK
Sbjct: 226 AMG-QAKEDVK 235
>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax
[TaxId: 5855]}
Length = 283
Score = 36.5 bits (83), Expect = 0.009
Identities = 35/256 (13%), Positives = 78/256 (30%), Gaps = 15/256 (5%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH----HPD 601
L++D+DGTL + E ++ + I +GR+ +
Sbjct: 13 LLIDFDGTLFVDKDI----KVPSENIDAIKEAIEK-GYMVSICTGRSKVGILSAFGEENL 67
Query: 602 LAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTK 661
+ V + D + T+E + I + I H +
Sbjct: 68 KKMNFYGMPGVYINGTIVYDQIGYTLLDETIETDVYAELISYLVEKNLVNQTIFHRGESN 127
Query: 662 FVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERREYIIDRASQI 721
+V +YA+ L+++ + + ++ + + + +I Q
Sbjct: 128 YVTE-DNKYADFLQKMYSENRSIIIRHNEMLKYRTMNKLMIV--LDPSESKTVIGNLKQK 184
Query: 722 FLEAGFEPHNALMAIEAKPPVKWDQGRASIHILRTMYGVDWSERVRIIYAGNEDAMLALQ 781
F E I+ L Y + + + + A N+ AML+
Sbjct: 185 FKNKLTIFTTYNGHAEVTK--LGHDKYTGINYLLKHYNISNDQVLVVGDAENDIAMLSNF 242
Query: 782 GIACTFRVDSSPTVKS 797
+ +++ + KS
Sbjct: 243 KYSFAVA-NATDSAKS 257
>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Archaeon Thermoplasma acidophilum [TaxId: 2303]}
Length = 225
Score = 35.7 bits (81), Expect = 0.013
Identities = 17/148 (11%), Positives = 38/148 (25%), Gaps = 9/148 (6%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
+D DG LT ++S + + + + ++SG + L +
Sbjct: 6 AAIDVDGNLT-----DRDRLISTKAIESIRSAEKK-GLTVSLLSGNV---IPVVYALKIF 56
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
V + N G I E +
Sbjct: 57 LGINGPVFGENGGIMFDNDGSIKKFFSNEGTNKFLEEMSKRTSMRSILTNRWREASTGFD 116
Query: 666 VPKEYAEKLRQLIKALQDEVCHDGAWIE 693
+ E + +R+ ++ + + G
Sbjct: 117 IDPEDVDYVRKEAESRGFVIFYSGYSWH 144
>d1wj4a_ d.15.1.2 (A:) Hypothetical protein KIAA0794 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 124
Score = 33.9 bits (77), Expect = 0.022
Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 13/90 (14%)
Query: 652 LEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERR 711
L + +PDG + +P++ KL L+K +++KG T RR
Sbjct: 46 LMLRYPDGKREQITLPEQ--AKLLALVK-----------HVQSKGYPNERFELLTNFPRR 92
Query: 712 EYIIDRASQIFLEAGFEPHNALMAIEAKPP 741
+ EAG P + E+ P
Sbjct: 93 KLSHLDYDITLQEAGLCPQETVFVQESGPS 122
>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase
{Pyrococcus horikoshii [TaxId: 53953]}
Length = 230
Score = 35.0 bits (79), Expect = 0.022
Identities = 20/150 (13%), Positives = 51/150 (34%), Gaps = 11/150 (7%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHPDLAVM 605
+ +D DGT+T ++ E+ + R ++ + I +++G T++ +++
Sbjct: 5 ISIDIDGTIT-----YPNRMIHEKALEAIRRAESL-GIPIMLVTGNTVQFAE---AASIL 55
Query: 606 SEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEILHPDGTKFVHP 665
+ V+ I +++ + N + + + + V
Sbjct: 56 IGTSGPVVAEDGGAISYKKKRIFLASMDEEWILWNEIRKRFPNARTSYTMPDRRAGLVIM 115
Query: 666 VPKEYAEKLRQLIKALQDE--VCHDGAWIE 693
E +R++I L G I
Sbjct: 116 RETINVETVREIINELNLNLVAVDSGFAIH 145
>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 243
Score = 35.0 bits (79), Expect = 0.022
Identities = 13/54 (24%), Positives = 24/54 (44%), Gaps = 7/54 (12%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHH 599
+ D DGTLT +++E L++L + IG++ G E ++
Sbjct: 6 CLFDVDGTLT-----APRQKITKEMDDFLQKLRQ--KIKIGVVGGSDFEKVQEQ 52
>d1h8ca_ d.15.1.2 (A:) Fas-associated factor 1, Faf1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 32.1 bits (73), Expect = 0.041
Identities = 17/88 (19%), Positives = 28/88 (31%), Gaps = 14/88 (15%)
Query: 652 LEILHPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFHYRETPIERR 711
L I P G KL+ + ++ +KG + + RR
Sbjct: 8 LRIRTPSGEFLERRFLAS--NKLQIVF-----------DFVASKGFPWDEYKLLSTFPRR 54
Query: 712 EYIIDRASQIFLEAGFEPHNALMAIEAK 739
+ ++ LE P L +EAK
Sbjct: 55 DVTQLDPNKSLLEVKLFPQETLF-LEAK 81
>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 244
Score = 34.3 bits (77), Expect = 0.041
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRHHP 600
++ + D DGTLT P + E L++L + V IG++ G +
Sbjct: 1 RVLCLFDVDGTLT-----PARQKIDPEVAAFLQKLRS--RVQIGVVGGSDYCKIAEQL 51
>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia
coli [TaxId: 562]}
Length = 269
Score = 33.0 bits (74), Expect = 0.12
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 5/53 (9%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH 598
++ D DGT + + L + + SG L
Sbjct: 5 IVTDMDGTFL----NDAKTYNQPRFMAQYQELKKR-GIKFVVASGNQYYQLIS 52
>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli
[TaxId: 562]}
Length = 271
Score = 32.2 bits (72), Expect = 0.18
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH 598
+ +D DGTL PD + S K + VN+ + +GR + +
Sbjct: 7 IAIDMDGTLL----LPDHTI-SPAVKNAIAAARAR-GVNVVLTTGRPYAGVHN 53
>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga
maritima [TaxId: 2336]}
Length = 267
Score = 31.9 bits (71), Expect = 0.23
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 546 LILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH 598
+ D DGTL L + +SE+ +R +E+L+ + SGR L + +
Sbjct: 5 FVFDLDGTL--LNDN---LEISEKDRRNIEKLSR--KCYVVFASGRMLVSTLN 50
>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953
{Synechocystis sp. pcc 6803 [TaxId: 1148]}
Length = 244
Score = 31.9 bits (71), Expect = 0.25
Identities = 17/167 (10%), Positives = 41/167 (24%), Gaps = 19/167 (11%)
Query: 543 KLSLILDYDGTLTPLTSHPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLRH---- 598
+L LI D D T E + L + + +GR+ + R
Sbjct: 3 QLLLISDLDNTWVGDQQAL------EHLQEYLGDRRG--NFYLAYATGRSYHSARELQKQ 54
Query: 599 ---HPDLAVMSEETKRVLERLANMPDVNIGIISGRTLENLMKMVNIEKVTYAGSHGLEIL 655
++ + + + L + + + L
Sbjct: 55 VGLMEPDYWLTAVGSEIYHPEGLDQHWADYLSEHWQRDILQAIAD----GFEALKPQSPL 110
Query: 656 HPDGTKFVHPVPKEYAEKLRQLIKALQDEVCHDGAWIENKGVLLTFH 702
+ K + + + + + + E I + G +
Sbjct: 111 EQNPWKISYHLDPQACPTVIDQLTEMLKETGIPVQVIFSSGKDVDLL 157
>d2o7ta1 a.4.1.9 (A:1-78) Transcriptional regulator Cgl1640/Cg1846
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 78
Score = 28.6 bits (64), Expect = 0.53
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
R ++RRE+II ++ +
Sbjct: 2 RADALKRREHIITTTCNLYRTHHHD 26
>d2id6a1 a.4.1.9 (A:1-75) Transcriptional regulator TM1030
{Thermotoga maritima [TaxId: 2336]}
Length = 75
Score = 28.2 bits (63), Expect = 0.71
Identities = 5/21 (23%), Positives = 14/21 (66%)
Query: 708 IERREYIIDRASQIFLEAGFE 728
+ +R+ I+ A ++F + G++
Sbjct: 2 LSKRDAILKAAVEVFGKKGYD 22
>d2g3ba1 a.4.1.9 (A:2-73) Putative transcriptional regulator
{Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 72
Score = 28.2 bits (63), Expect = 0.84
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
ERR+ I+ ++ + G
Sbjct: 2 ERRDAILKASATAIAQRGIR 21
>d1t56a1 a.4.1.9 (A:22-94) Ethr repressor {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 73
Score = 27.4 bits (61), Expect = 1.5
Identities = 3/20 (15%), Positives = 7/20 (35%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+R I+ A + +
Sbjct: 3 DRELAILATAENLLEDRPLA 22
>d1rkta1 a.4.1.9 (A:2-82) Hypothetical transcriptional regulator
YfiR {Bacillus subtilis [TaxId: 1423]}
Length = 81
Score = 27.4 bits (61), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 704 RETPIERREYIIDRASQIFLEAGFE 728
+E +R+ I++ A +F GFE
Sbjct: 6 KEHKDKRQAEILEAAKTVFKRKGFE 30
>d2gfna1 a.4.1.9 (A:4-80) Probable transcriptional regulator
RHA1_ro04631 {Rhodococcus sp. rha1 [TaxId: 101510]}
Length = 77
Score = 27.4 bits (61), Expect = 1.7
Identities = 5/20 (25%), Positives = 7/20 (35%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
ERR + D + G
Sbjct: 6 ERRRALADAVLALIAREGIS 25
>d2gena1 a.4.1.9 (A:6-75) Probable transcriptional regulator PA1836
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 70
Score = 26.6 bits (59), Expect = 2.4
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 710 RREYIIDRASQIFLEAGFE 728
R++ I+ A F E G +
Sbjct: 1 RKDEILQAALACFSEHGVD 19
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 76
Score = 27.0 bits (60), Expect = 2.5
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 568 EETKRVLERLANMPDVNIGIISGRTLENLRHH 599
EE + +E + DV + I+ L+ L
Sbjct: 28 EEIVKAVEDVLKRDDVGVVIMKQEYLKKLPPV 59
>d1pb6a1 a.4.1.9 (A:14-85) Hypothetical transcriptional regulator
YcdC {Escherichia coli [TaxId: 562]}
Length = 72
Score = 26.6 bits (59), Expect = 2.7
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+++ I+ A F + GF
Sbjct: 4 AKKKAILSAALDTFSQFGFH 23
>d2g7sa1 a.4.1.9 (A:3-76) Putative transcriptional regulator Atu0279
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 74
Score = 26.6 bits (59), Expect = 2.7
Identities = 4/22 (18%), Positives = 10/22 (45%)
Query: 707 PIERREYIIDRASQIFLEAGFE 728
P + + I+ A + + G+
Sbjct: 2 PQSKADDILQCARTLIIRGGYN 23
>d1sgma1 a.4.1.9 (A:5-77) Putative transcriptional regulator YxaF
{Bacillus subtilis [TaxId: 1423]}
Length = 73
Score = 26.6 bits (59), Expect = 2.8
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+ RE I+ AS++ G+
Sbjct: 2 DSREKILHTASRLSQLQGYH 21
>d2fx0a1 a.4.1.9 (A:4-76) Hemolysin II regulatory protein, HlyIIR
{Bacillus cereus [TaxId: 1396]}
Length = 73
Score = 26.2 bits (58), Expect = 3.3
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+ E I+ A + F E G+E
Sbjct: 4 QTMENILKAAKKKFGERGYE 23
>d2fq4a1 a.4.1.9 (A:9-77) Transcriptional regulator BC3163 {Bacillus
cereus [TaxId: 1396]}
Length = 69
Score = 26.2 bits (58), Expect = 3.7
Identities = 7/21 (33%), Positives = 15/21 (71%)
Query: 708 IERREYIIDRASQIFLEAGFE 728
IE ++ I+ + ++ LE+GF+
Sbjct: 3 IETQKAILSASYELLLESGFK 23
>d3c07a1 a.4.1.9 (A:15-89) Putative transcriptional regulator
SCO4850 {Streptomyces coelicolor [TaxId: 1902]}
Length = 75
Score = 26.2 bits (58), Expect = 3.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+ R I++ A ++F E G++
Sbjct: 5 QTRALILETAMRLFQERGYD 24
>d1l5aa2 c.43.1.2 (A:175-424) VibH {Vibrio cholerae [TaxId: 666]}
Length = 250
Score = 28.0 bits (61), Expect = 3.9
Identities = 20/199 (10%), Positives = 47/199 (23%), Gaps = 11/199 (5%)
Query: 399 EELAALYRDSAIALVTPLRDGMNLVAKEYVACQIREPGVLILSPFAGAGGMMHEALLVNP 458
L L + I L L + + + A + + P
Sbjct: 47 HLLLKLANANQIGWPDALVALCALYLESAEPDAPWLWLPFMNRWGSVAANVPGLMVNSLP 106
Query: 459 YEIDAAAN--------VLHRALCMPRDERELRMSQLRHREQQLDVNHWMNSFLSSMGALD 510
+A +A+ R+ Q+ + + S ++ +
Sbjct: 107 LLRLSAQQTSLGNYLKQSGQAIRSLYLHGRYRIEQIEQDQGLNAEQSYFMSPFINILPFE 166
Query: 511 NDDDSDPLSAKTLQLTLDDFDLYLNNYVDGNCKLSLILDYDGTLTPLTSHPDLAVMSEET 570
+ +D + + + + +L L + D E
Sbjct: 167 SPHFADCQTELKVLASGSAEGINFTFRGSPQHELCLDITAD---LASYPQSHWQSHCERF 223
Query: 571 KRVLERLANMPDVNIGIIS 589
R E+L ++
Sbjct: 224 PRFFEQLLARFQQVEQDVA 242
>d2oi8a1 a.4.1.9 (A:8-86) Putative regulatory protein Sco4313
{Streptomyces coelicolor [TaxId: 1902]}
Length = 79
Score = 26.0 bits (57), Expect = 4.3
Identities = 6/20 (30%), Positives = 8/20 (40%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+ R I D A + AG
Sbjct: 9 QVRAEIKDHAWEQIATAGAS 28
>d1ui5a1 a.4.1.9 (A:5-75) A-factor receptor homolog CprB
{Streptomyces coelicolor [TaxId: 1902]}
Length = 71
Score = 25.8 bits (57), Expect = 4.5
Identities = 7/20 (35%), Positives = 11/20 (55%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
+ R II A+ +F G+E
Sbjct: 5 QTRATIIGAAADLFDRRGYE 24
>d2fbqa1 a.4.1.9 (A:2-80) Transcriptional regulator PsrA
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 79
Score = 26.0 bits (57), Expect = 4.8
Identities = 10/20 (50%), Positives = 12/20 (60%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
E E I+D A Q+F E GF
Sbjct: 4 ETVERILDAAEQLFAEKGFA 23
>d1vi0a1 a.4.1.9 (A:6-77) Hypothetical transcriptional regulator
YsiA {Bacillus subtilis [TaxId: 1423]}
Length = 72
Score = 25.8 bits (57), Expect = 5.2
Identities = 6/19 (31%), Positives = 10/19 (52%)
Query: 710 RREYIIDRASQIFLEAGFE 728
+ IID A ++ E G+
Sbjct: 2 KYMQIIDAAVEVIAENGYH 20
>d1v7ba1 a.4.1.9 (A:1-74) Transcriptional regulator Cgl2612
{Corynebacterium glutamicum [TaxId: 1718]}
Length = 74
Score = 25.6 bits (56), Expect = 5.6
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 709 ERREYIIDRASQIFLEAGFE 728
++E I+ A E E
Sbjct: 4 SKKEMILRTAIDYIGEYSLE 23
>d2i9ca1 a.118.1.25 (A:3-123) Hypothetical protein RPA1889
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 121
Score = 26.7 bits (59), Expect = 5.8
Identities = 11/56 (19%), Positives = 19/56 (33%), Gaps = 11/56 (19%)
Query: 553 TLTPLTSHPD-----------LAVMSEETKRVLERLANMPDVNIGIISGRTLENLR 597
L L +P+ LAV + + LE + + +G L+ L
Sbjct: 59 ALLSLFEYPNMQVRLQAAKLTLAVAPVKAREQLEAIVSSKWFPQAGDAGMCLDLLD 114
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.137 0.423
Gapped
Lambda K H
0.267 0.0687 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,237,882
Number of extensions: 159653
Number of successful extensions: 569
Number of sequences better than 10.0: 1
Number of HSP's gapped: 561
Number of HSP's successfully gapped: 42
Length of query: 808
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 715
Effective length of database: 1,130,706
Effective search space: 808454790
Effective search space used: 808454790
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (25.8 bits)