Query psy2724
Match_columns 174
No_of_seqs 176 out of 1193
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 23:36:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2724.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2724hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00281 actin; Provisional 100.0 3.1E-48 6.8E-53 315.1 18.0 172 1-172 1-172 (376)
2 PTZ00452 actin; Provisional 100.0 1.6E-47 3.5E-52 310.6 17.9 168 5-172 4-171 (375)
3 PTZ00466 actin-like protein; P 100.0 8.1E-47 1.8E-51 306.9 18.1 167 5-172 11-177 (380)
4 KOG0679|consensus 100.0 6.5E-47 1.4E-51 296.1 16.2 170 2-172 7-177 (426)
5 PTZ00004 actin-2; Provisional 100.0 9.7E-46 2.1E-50 300.8 18.6 172 1-172 1-172 (378)
6 KOG0676|consensus 100.0 3.4E-46 7.3E-51 297.2 12.2 164 4-172 5-168 (372)
7 PTZ00280 Actin-related protein 100.0 1.3E-43 2.7E-48 291.5 18.3 168 5-172 3-183 (414)
8 KOG0677|consensus 100.0 1.3E-43 2.9E-48 266.4 11.7 169 4-172 2-172 (389)
9 PF00022 Actin: Actin; InterP 100.0 1.2E-42 2.6E-47 283.8 15.5 165 3-172 1-165 (393)
10 smart00268 ACTIN Actin. ACTIN 100.0 1.1E-40 2.4E-45 270.7 17.9 166 6-172 1-166 (373)
11 cd00012 ACTIN Actin; An ubiqui 100.0 7.5E-40 1.6E-44 265.7 17.4 166 8-173 1-167 (371)
12 COG5277 Actin and related prot 100.0 2.2E-39 4.8E-44 265.8 16.0 171 3-173 3-180 (444)
13 KOG0681|consensus 100.0 9.9E-34 2.2E-38 229.9 12.4 161 6-171 23-190 (645)
14 KOG0678|consensus 100.0 1.9E-31 4E-36 205.8 11.9 165 8-173 6-186 (415)
15 KOG0680|consensus 100.0 5.4E-31 1.2E-35 202.9 11.4 161 5-173 2-176 (400)
16 PRK13930 rod shape-determining 99.9 3E-26 6.5E-31 183.7 16.1 155 9-172 11-175 (335)
17 PRK13927 rod shape-determining 99.9 8.3E-26 1.8E-30 181.2 15.1 155 7-171 6-171 (334)
18 TIGR00904 mreB cell shape dete 99.9 2.5E-22 5.4E-27 161.1 16.7 158 9-171 5-173 (333)
19 PRK13929 rod-share determining 99.9 4.1E-22 8.9E-27 160.0 17.1 155 7-170 5-172 (335)
20 PRK13928 rod shape-determining 99.8 2.8E-19 6E-24 143.7 16.1 153 9-171 6-169 (336)
21 PF06723 MreB_Mbl: MreB/Mbl pr 99.8 1.5E-18 3.2E-23 138.1 13.5 156 7-171 2-167 (326)
22 KOG0797|consensus 99.8 1.3E-18 2.8E-23 141.4 12.4 109 65-173 178-299 (618)
23 COG1077 MreB Actin-like ATPase 99.6 9.3E-15 2E-19 114.0 14.8 157 6-169 6-173 (342)
24 TIGR02529 EutJ ethanolamine ut 99.1 3E-09 6.5E-14 81.8 12.6 100 69-171 28-130 (239)
25 PRK15080 ethanolamine utilizat 98.9 5.7E-08 1.2E-12 75.9 14.9 133 5-172 23-158 (267)
26 TIGR01991 HscA Fe-S protein as 98.6 3.7E-07 8E-12 78.9 11.5 147 8-166 1-198 (599)
27 PLN03184 chloroplast Hsp70; Pr 98.6 7.1E-07 1.5E-11 78.0 13.0 85 79-166 149-241 (673)
28 PRK13410 molecular chaperone D 98.6 1E-06 2.2E-11 76.9 13.6 64 102-166 136-204 (668)
29 CHL00094 dnaK heat shock prote 98.6 8.7E-07 1.9E-11 76.9 12.7 85 80-167 113-205 (621)
30 PRK13411 molecular chaperone D 98.6 9E-07 2E-11 77.2 12.4 64 102-166 134-203 (653)
31 PTZ00400 DnaK-type molecular c 98.6 1.6E-06 3.4E-11 75.8 13.3 65 101-166 174-243 (663)
32 PRK05183 hscA chaperone protei 98.6 1.7E-06 3.7E-11 75.0 13.2 64 102-166 150-218 (616)
33 PRK11678 putative chaperone; P 98.5 1.6E-06 3.5E-11 72.4 11.6 157 8-166 2-226 (450)
34 TIGR02350 prok_dnaK chaperone 98.5 1.1E-06 2.4E-11 75.9 10.4 64 102-166 131-200 (595)
35 PRK00290 dnaK molecular chaper 98.4 1.3E-06 2.9E-11 75.9 9.7 64 102-166 134-202 (627)
36 PTZ00009 heat shock 70 kDa pro 98.4 3.8E-06 8.2E-11 73.4 11.3 64 102-166 141-211 (653)
37 COG0443 DnaK Molecular chapero 98.4 1.2E-05 2.6E-10 69.3 14.0 149 6-166 5-189 (579)
38 PTZ00186 heat shock 70 kDa pre 98.3 1.7E-05 3.8E-10 69.2 13.9 65 102-167 161-230 (657)
39 PRK01433 hscA chaperone protei 98.3 1.1E-05 2.4E-10 69.7 12.6 64 102-166 142-210 (595)
40 PF00012 HSP70: Hsp70 protein; 98.1 1.7E-05 3.8E-10 68.4 9.3 64 102-166 136-205 (602)
41 TIGR03739 PRTRC_D PRTRC system 98.1 3.1E-05 6.6E-10 62.1 9.0 158 11-172 2-190 (320)
42 PRK13917 plasmid segregation p 97.6 0.00092 2E-08 54.2 10.2 162 6-172 2-208 (344)
43 TIGR01174 ftsA cell division p 97.4 0.0048 1E-07 50.4 12.2 58 113-171 156-218 (371)
44 PRK10719 eutA reactivating fac 97.3 0.0085 1.8E-07 50.1 12.5 150 3-172 3-169 (475)
45 KOG0104|consensus 96.9 0.013 2.8E-07 51.4 10.3 65 102-167 159-233 (902)
46 PF06406 StbA: StbA protein; 96.7 0.0062 1.3E-07 48.8 6.8 83 86-169 81-184 (318)
47 TIGR01175 pilM type IV pilus a 96.3 0.28 6E-06 39.5 14.0 59 113-172 141-211 (348)
48 PF06277 EutA: Ethanolamine ut 96.2 0.18 3.9E-06 42.4 12.4 147 5-172 2-166 (473)
49 COG4820 EutJ Ethanolamine util 95.8 0.01 2.2E-07 44.4 3.2 100 70-172 61-163 (277)
50 PRK11031 guanosine pentaphosph 95.7 0.17 3.7E-06 43.1 10.7 70 101-172 78-155 (496)
51 KOG0103|consensus 95.3 0.24 5.2E-06 43.3 10.1 66 100-166 136-213 (727)
52 TIGR03706 exo_poly_only exopol 95.1 0.29 6.2E-06 38.9 9.6 70 101-172 72-148 (300)
53 KOG0101|consensus 95.1 0.65 1.4E-05 40.5 12.2 65 102-167 144-215 (620)
54 COG1548 Predicted transcriptio 94.8 0.19 4E-06 39.1 7.5 24 148-171 129-152 (330)
55 PRK09472 ftsA cell division pr 94.8 0.12 2.5E-06 43.2 6.9 58 113-171 164-226 (420)
56 TIGR03123 one_C_unchar_1 proba 94.8 0.51 1.1E-05 37.9 10.1 29 144-172 123-151 (318)
57 PRK10854 exopolyphosphatase; P 94.5 0.42 9.2E-06 40.9 9.8 68 102-171 84-159 (513)
58 PF11104 PilM_2: Type IV pilus 94.3 0.28 6E-06 39.6 7.8 89 79-171 86-202 (340)
59 COG0248 GppA Exopolyphosphatas 94.1 0.2 4.2E-06 42.7 6.7 53 117-169 90-149 (492)
60 PF01968 Hydantoinase_A: Hydan 93.6 0.1 2.2E-06 41.3 4.0 32 141-172 68-100 (290)
61 PRK13321 pantothenate kinase; 92.9 1.2 2.6E-05 34.6 9.0 18 9-26 3-20 (256)
62 COG4972 PilM Tfp pilus assembl 92.7 4.3 9.3E-05 32.8 11.7 22 151-172 195-216 (354)
63 COG1521 Pantothenate kinase ty 90.6 2.3 5E-05 33.0 8.2 18 8-25 2-19 (251)
64 PRK13324 pantothenate kinase; 88.5 7.2 0.00016 30.4 9.6 18 8-25 2-19 (258)
65 COG4819 EutA Ethanolamine util 88.0 4.7 0.0001 32.8 8.2 149 3-172 2-168 (473)
66 cd08627 PI-PLCc_gamma1 Catalyt 87.6 1.5 3.3E-05 33.5 5.1 44 81-130 74-117 (229)
67 TIGR00671 baf pantothenate kin 87.4 4.1 8.9E-05 31.4 7.6 18 9-26 2-19 (243)
68 TIGR03367 queuosine_QueD queuo 87.3 1.2 2.6E-05 28.9 4.0 50 73-129 42-91 (92)
69 cd08626 PI-PLCc_beta4 Catalyti 86.8 1.6 3.5E-05 34.0 5.0 44 81-130 76-119 (257)
70 cd08630 PI-PLCc_delta3 Catalyt 86.6 1.7 3.7E-05 33.8 5.1 44 81-130 74-117 (258)
71 cd08632 PI-PLCc_eta1 Catalytic 86.4 1.8 3.9E-05 33.6 5.1 44 81-130 74-117 (253)
72 COG0849 ftsA Cell division ATP 86.4 1.8 3.9E-05 36.2 5.4 51 121-171 170-225 (418)
73 PRK13318 pantothenate kinase; 86.3 14 0.0003 28.6 10.1 18 8-25 2-19 (258)
74 cd08596 PI-PLCc_epsilon Cataly 86.2 1.9 4E-05 33.6 5.0 44 81-130 74-117 (254)
75 cd08629 PI-PLCc_delta1 Catalyt 86.1 1.8 4E-05 33.7 5.0 44 81-130 74-117 (258)
76 cd08595 PI-PLCc_zeta Catalytic 86.0 1.9 4.1E-05 33.6 5.0 44 81-130 74-117 (257)
77 cd08594 PI-PLCc_eta Catalytic 86.0 2 4.3E-05 32.8 5.0 44 81-130 74-117 (227)
78 cd08631 PI-PLCc_delta4 Catalyt 86.0 1.9 4.1E-05 33.6 5.0 44 81-130 74-117 (258)
79 cd08593 PI-PLCc_delta Catalyti 85.8 1.9 4.1E-05 33.6 4.9 44 81-130 74-117 (257)
80 cd08633 PI-PLCc_eta2 Catalytic 85.6 2.1 4.5E-05 33.3 5.0 44 81-130 74-117 (254)
81 smart00842 FtsA Cell division 85.4 3.6 7.9E-05 30.1 6.2 22 71-92 36-57 (187)
82 cd08591 PI-PLCc_beta Catalytic 85.1 2.2 4.8E-05 33.2 5.0 44 81-130 76-119 (257)
83 cd08592 PI-PLCc_gamma Catalyti 84.8 2.4 5.2E-05 32.5 5.0 44 81-130 74-117 (229)
84 cd08598 PI-PLC1c_yeast Catalyt 84.4 2.5 5.4E-05 32.4 4.9 44 81-130 74-117 (231)
85 cd08597 PI-PLCc_PRIP_metazoa C 83.3 2.8 6.1E-05 32.7 4.9 44 81-130 74-117 (260)
86 TIGR00241 CoA_E_activ CoA-subs 83.0 19 0.00041 27.6 9.8 24 149-172 91-114 (248)
87 cd08558 PI-PLCc_eukaryota Cata 82.9 3.2 6.9E-05 31.8 4.9 45 81-131 74-118 (226)
88 cd08628 PI-PLCc_gamma2 Catalyt 81.6 3.8 8.2E-05 31.9 5.0 44 81-130 74-117 (254)
89 PF08735 DUF1786: Putative pyr 81.5 8.3 0.00018 30.0 6.8 39 134-172 145-190 (254)
90 cd08623 PI-PLCc_beta1 Catalyti 81.5 3.7 8.1E-05 32.0 4.9 45 81-131 76-121 (258)
91 cd08624 PI-PLCc_beta2 Catalyti 81.0 3.8 8.3E-05 32.0 4.9 44 81-130 76-120 (261)
92 KOG0100|consensus 81.0 3.9 8.5E-05 34.2 5.1 62 102-164 173-240 (663)
93 TIGR03286 methan_mark_15 putat 80.3 14 0.0003 30.8 8.1 24 149-172 241-264 (404)
94 cd08625 PI-PLCc_beta3 Catalyti 79.5 4.2 9.1E-05 31.8 4.7 44 81-130 76-120 (258)
95 COG1924 Activator of 2-hydroxy 78.1 30 0.00065 28.7 9.2 56 115-173 198-253 (396)
96 TIGR00039 6PTHBS 6-pyruvoyl te 77.5 4.4 9.6E-05 27.8 3.9 52 73-129 44-95 (124)
97 PLN02223 phosphoinositide phos 77.0 5.6 0.00012 34.3 5.0 45 81-130 179-223 (537)
98 TIGR03192 benz_CoA_bzdQ benzoy 75.8 36 0.00077 27.2 9.0 25 148-172 124-149 (293)
99 cd08599 PI-PLCc_plant Catalyti 75.4 8.3 0.00018 29.6 5.2 43 81-129 74-116 (228)
100 PF03309 Pan_kinase: Type III 75.3 12 0.00026 27.9 6.0 18 9-26 2-19 (206)
101 PF02541 Ppx-GppA: Ppx/GppA ph 74.6 4.3 9.2E-05 31.8 3.6 69 102-172 59-135 (285)
102 PLN02230 phosphoinositide phos 74.3 7 0.00015 34.3 5.1 44 81-130 187-230 (598)
103 PLN02952 phosphoinositide phos 73.9 7.3 0.00016 34.2 5.1 44 81-130 196-239 (599)
104 PLN02222 phosphoinositide phos 73.8 7.1 0.00015 34.1 5.0 44 81-130 176-219 (581)
105 PLN02228 Phosphoinositide phos 72.8 8.1 0.00017 33.7 5.0 45 81-131 179-223 (567)
106 PRK13326 pantothenate kinase; 71.3 47 0.001 25.9 10.1 20 7-26 7-26 (262)
107 PF13941 MutL: MutL protein 67.1 13 0.00029 31.5 5.0 73 100-172 177-271 (457)
108 KOG0169|consensus 66.9 13 0.00028 33.3 5.0 44 81-130 361-404 (746)
109 TIGR01319 glmL_fam conserved h 63.7 14 0.0003 31.4 4.5 71 101-171 174-271 (463)
110 KOG1265|consensus 63.4 14 0.00031 33.9 4.7 43 81-129 388-430 (1189)
111 cd00470 PTPS 6-pyruvoyl tetrah 62.9 12 0.00026 26.2 3.5 51 74-129 57-109 (135)
112 KOG1794|consensus 61.9 83 0.0018 25.3 8.8 89 81-170 47-141 (336)
113 smart00732 YqgFc Likely ribonu 60.5 12 0.00027 23.8 3.1 19 7-25 2-20 (99)
114 COG0849 ftsA Cell division ATP 58.2 29 0.00062 29.2 5.5 58 7-92 7-64 (418)
115 COG0145 HyuA N-methylhydantoin 58.0 13 0.00028 33.2 3.6 29 144-172 271-301 (674)
116 PRK09472 ftsA cell division pr 57.1 34 0.00074 28.5 5.8 22 71-92 45-66 (420)
117 PF03612 EIIBC-GUT_N: Sorbitol 57.1 8.2 0.00018 28.4 1.9 34 3-41 60-93 (183)
118 KOG0100|consensus 54.4 27 0.00059 29.4 4.6 113 4-130 223-339 (663)
119 COG4012 Uncharacterized protei 52.1 1.2E+02 0.0026 24.1 8.1 24 148-171 226-249 (342)
120 PF01242 PTPS: 6-pyruvoyl tetr 51.1 14 0.00031 25.0 2.2 49 73-128 42-94 (123)
121 PF14450 FtsA: Cell division p 47.7 18 0.00039 24.4 2.3 19 8-26 1-19 (120)
122 PRK00568 carbon storage regula 47.1 23 0.0005 22.2 2.5 25 3-30 15-39 (76)
123 PF08841 DDR: Diol dehydratase 46.6 26 0.00057 27.9 3.3 55 112-166 92-151 (332)
124 PF00370 FGGY_N: FGGY family o 44.6 19 0.00042 27.3 2.3 19 8-26 2-20 (245)
125 PRK09557 fructokinase; Reviewe 42.6 1.6E+02 0.0035 23.0 9.5 50 120-171 88-144 (301)
126 PF02201 SWIB: SWIB/MDM2 domai 40.5 26 0.00057 21.7 2.1 31 77-108 20-50 (76)
127 PF07318 DUF1464: Protein of u 39.7 61 0.0013 26.5 4.5 27 146-172 151-177 (343)
128 TIGR00744 ROK_glcA_fam ROK fam 39.6 1.1E+02 0.0025 24.0 6.2 50 120-171 89-145 (318)
129 COG1149 MinD superfamily P-loo 38.7 50 0.0011 26.2 3.7 39 100-139 186-224 (284)
130 KOG0102|consensus 38.6 53 0.0012 28.7 4.1 62 102-164 161-227 (640)
131 TIGR00202 csrA carbon storage 37.3 50 0.0011 20.3 2.9 25 3-30 15-39 (69)
132 TIGR03112 6_pyr_pter_rel 6-pyr 36.6 59 0.0013 21.9 3.4 49 74-129 38-87 (113)
133 smart00148 PLCXc Phospholipase 36.4 99 0.0021 21.4 4.7 43 82-130 74-116 (135)
134 COG0720 6-pyruvoyl-tetrahydrop 36.3 41 0.00089 23.2 2.7 50 75-130 47-97 (127)
135 TIGR00825 EIIBC-GUT PTS system 35.8 32 0.00069 27.4 2.2 34 3-41 60-93 (331)
136 PF14606 Lipase_GDSL_3: GDSL-l 35.0 98 0.0021 22.8 4.6 62 79-141 72-147 (178)
137 PF01968 Hydantoinase_A: Hydan 34.9 27 0.00058 27.6 1.8 27 4-30 75-101 (290)
138 COG0813 DeoD Purine-nucleoside 34.3 2.2E+02 0.0047 22.0 8.9 65 71-141 123-187 (236)
139 PRK13331 pantothenate kinase; 34.2 54 0.0012 25.5 3.3 26 1-26 2-27 (251)
140 KOG1386|consensus 33.9 3.1E+02 0.0068 23.7 10.1 85 81-166 65-179 (501)
141 PRK01712 carbon storage regula 32.8 52 0.0011 19.9 2.4 25 3-30 15-39 (64)
142 PF14401 RLAN: RimK-like ATPgr 32.2 1.9E+02 0.0041 20.6 6.1 52 80-134 66-117 (153)
143 PRK03011 butyrate kinase; Prov 32.1 38 0.00082 27.8 2.3 24 6-29 2-25 (358)
144 PRK13329 pantothenate kinase; 31.6 46 0.001 25.7 2.6 17 8-24 3-19 (249)
145 PRK13333 pantothenate kinase; 30.2 43 0.00092 25.3 2.1 27 140-169 77-103 (206)
146 KOG1264|consensus 28.6 91 0.002 28.8 4.1 44 80-129 380-423 (1267)
147 PRK10331 L-fuculokinase; Provi 26.9 64 0.0014 27.2 2.9 20 7-26 3-22 (470)
148 PF06134 RhaA: L-rhamnose isom 26.7 52 0.0011 27.4 2.2 30 131-160 234-263 (417)
149 COG1880 CdhB CO dehydrogenase/ 26.7 1.4E+02 0.003 21.7 4.1 36 100-136 35-70 (170)
150 COG1070 XylB Sugar (pentulose 26.6 62 0.0013 27.7 2.8 21 6-26 4-24 (502)
151 COG4604 CeuD ABC-type enteroch 26.6 3E+02 0.0065 21.2 7.6 78 69-146 100-204 (252)
152 COG3732 SrlE Phosphotransferas 26.3 67 0.0015 25.3 2.6 33 3-40 61-93 (328)
153 TIGR02261 benz_CoA_red_D benzo 26.3 3.2E+02 0.007 21.4 6.6 79 81-172 42-121 (262)
154 TIGR01568 A_thal_3678 uncharac 26.2 63 0.0014 19.7 2.0 18 74-91 25-42 (66)
155 TIGR02628 fuculo_kin_coli L-fu 26.1 70 0.0015 27.0 3.0 19 8-26 3-21 (465)
156 PF13941 MutL: MutL protein 25.1 54 0.0012 27.9 2.1 22 8-29 2-25 (457)
157 TIGR00749 glk glucokinase, pro 25.0 49 0.0011 26.3 1.8 24 123-146 84-107 (316)
158 TIGR01091 upp uracil phosphori 24.8 2.1E+02 0.0046 21.3 5.1 38 98-136 119-156 (207)
159 PRK12408 glucokinase; Provisio 24.4 53 0.0011 26.5 1.9 47 122-169 102-165 (336)
160 cd00408 DHDPS-like Dihydrodipi 24.3 1.1E+02 0.0023 23.8 3.6 23 70-92 7-29 (281)
161 PF01869 BcrAD_BadFG: BadF/Bad 24.3 3.3E+02 0.0071 20.9 8.9 83 82-171 43-128 (271)
162 PF02685 Glucokinase: Glucokin 24.2 1.1E+02 0.0025 24.5 3.7 23 124-146 86-108 (316)
163 PRK00976 hypothetical protein; 23.9 1.5E+02 0.0033 24.1 4.3 32 140-172 140-171 (326)
164 PRK14101 bifunctional glucokin 23.4 75 0.0016 28.1 2.7 24 122-145 99-122 (638)
165 cd00954 NAL N-Acetylneuraminic 23.2 1.4E+02 0.003 23.4 4.0 54 69-127 9-66 (288)
166 PTZ00294 glycerol kinase-like 22.9 87 0.0019 26.7 3.0 19 8-26 4-22 (504)
167 PF06277 EutA: Ethanolamine ut 22.5 5.1E+02 0.011 22.4 10.7 86 81-167 353-466 (473)
168 PRK03170 dihydrodipicolinate s 22.3 1.4E+02 0.0029 23.5 3.8 24 69-92 10-33 (292)
169 COG0329 DapA Dihydrodipicolina 22.3 2.5E+02 0.0055 22.3 5.3 25 68-93 12-37 (299)
170 TIGR01311 glycerol_kin glycero 22.2 93 0.002 26.4 3.0 19 8-26 3-21 (493)
171 PF10726 DUF2518: Protein of f 21.9 35 0.00077 24.1 0.4 30 5-34 70-99 (145)
172 PF00480 ROK: ROK family; Int 21.7 2.9E+02 0.0064 19.4 5.7 53 118-172 81-140 (179)
173 PRK13322 pantothenate kinase; 21.3 87 0.0019 24.2 2.4 18 8-25 2-19 (246)
174 PF00349 Hexokinase_1: Hexokin 21.1 72 0.0016 23.9 1.9 21 4-24 61-81 (206)
175 COG1940 NagC Transcriptional r 21.1 4.1E+02 0.0089 20.8 11.1 50 120-171 98-154 (314)
No 1
>PTZ00281 actin; Provisional
Probab=100.00 E-value=3.1e-48 Score=315.10 Aligned_cols=172 Identities=92% Similarity=1.420 Sum_probs=160.8
Q ss_pred CCCCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCH
Q psy2724 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNW 80 (174)
Q Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~ 80 (174)
|.+|+.++||||+||+++|+||+|++.|++++||+++++++.....+.++++.++|+++...+..+.+++|+++|.|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~dw 80 (376)
T PTZ00281 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNW 80 (376)
T ss_pred CCCCcCCeEEEECCCCeEEEeeCCCCCCCeeccccceeecCcccccCcccCCeEECchhhccccCcEEeccCcCCEEcCH
Confidence 78999999999999999999999999999999999999877543333345678999998777778899999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCc
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~ 160 (174)
|+++.+|+|+|.+.|+++|+++|++++||+++++..|++++|++||.|++|++++.+++++++|+.|++||||||+|++.
T Consensus 81 d~~e~l~~~~f~~~l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (376)
T PTZ00281 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGV 160 (376)
T ss_pred HHHHHHHHHHHHhhccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCCceEEEEECCCce
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCeec
Q psy2724 161 SHTVPIYEDHEG 172 (174)
Q Consensus 161 t~v~pV~dG~~~ 172 (174)
|+|+||+||++.
T Consensus 161 t~v~PV~dG~~~ 172 (376)
T PTZ00281 161 SHTVPIYEGYAL 172 (376)
T ss_pred EEEEEEEecccc
Confidence 999999999986
No 2
>PTZ00452 actin; Provisional
Probab=100.00 E-value=1.6e-47 Score=310.61 Aligned_cols=168 Identities=58% Similarity=1.072 Sum_probs=155.7
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHHH
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
..++||||+||+++|+||||++.|++++||++|+++......+..+++.++|+++...++.+.+++|+++|+|.|||.++
T Consensus 4 ~~~~vViD~Gs~~~k~G~age~~P~~i~ps~vg~~~~~~~~~~~~~~~~~iG~~~~~~~~~~~l~~Pi~~G~I~dwd~~e 83 (375)
T PTZ00452 4 QYPAVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLAIKEPIQNGIINSWDDIE 83 (375)
T ss_pred CCCEEEEECCCCeEEEeeCCCCCcCEEecceeEEECCccccccccccceEEChhhhccccCcEEcccCcCCEEcCHHHHH
Confidence 45789999999999999999999999999999998765322222345789999988778889999999999999999999
Q ss_pred HHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEEE
Q psy2724 85 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 164 (174)
Q Consensus 85 ~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~ 164 (174)
.+|+|+|.+.|+++|+++|++++|++++++..|++++|+|||.|++|++++.++++|++|++|++||||||+|++.|+|+
T Consensus 84 ~iw~~~f~~~l~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~~tglVVDiG~~~t~v~ 163 (375)
T PTZ00452 84 IIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCV 163 (375)
T ss_pred HHHHHHHHhhcCCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCCceeeeecCCCCcceEE
Confidence 99999998899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCeec
Q psy2724 165 PIYEDHEG 172 (174)
Q Consensus 165 pV~dG~~~ 172 (174)
||+||++.
T Consensus 164 PV~dG~~l 171 (375)
T PTZ00452 164 PVFEGHQI 171 (375)
T ss_pred EEECCEEe
Confidence 99999986
No 3
>PTZ00466 actin-like protein; Provisional
Probab=100.00 E-value=8.1e-47 Score=306.87 Aligned_cols=167 Identities=54% Similarity=1.029 Sum_probs=155.4
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHHH
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
+.++||||+||+++|+||+|++.|++++||++|+++......+..+++.++|+++...++...+++|+++|+|.|||.++
T Consensus 11 ~~~~iViD~GS~~~K~G~ag~~~P~~~~ps~vg~~k~~~~~~~~~~~~~~vG~~~~~~~~~~~l~~Pi~~G~v~dwd~~e 90 (380)
T PTZ00466 11 SNQPIIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKVTYPINHGIIENWNDME 90 (380)
T ss_pred cCCeEEEECCCCcEEEeeCCCCCCCEeccceeeeecCccccccCCCCCeEECchhhhhCcCceeCccccCCeECCHHHHH
Confidence 45689999999999999999999999999999998875433344456789999988777888899999999999999999
Q ss_pred HHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEEE
Q psy2724 85 KIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTV 164 (174)
Q Consensus 85 ~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~ 164 (174)
.+|+|+| ++|+++++++|++++|++++++..|++++|+|||+|++|++++.++++|++||+|++||+|||+|++.|+|+
T Consensus 91 ~iw~~~f-~~l~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~~tglVVD~G~~~t~v~ 169 (380)
T PTZ00466 91 NIWIHVY-NSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCV 169 (380)
T ss_pred HHHHHHH-hhcccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCCceEEEEeCCCCceEEE
Confidence 9999999 789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeCCeec
Q psy2724 165 PIYEDHEG 172 (174)
Q Consensus 165 pV~dG~~~ 172 (174)
||+||++.
T Consensus 170 PV~~G~~~ 177 (380)
T PTZ00466 170 SIYEGYSI 177 (380)
T ss_pred EEECCEEe
Confidence 99999986
No 4
>KOG0679|consensus
Probab=100.00 E-value=6.5e-47 Score=296.11 Aligned_cols=170 Identities=40% Similarity=0.724 Sum_probs=154.1
Q ss_pred CCCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhh-hccCcceeeccccCCeecCH
Q psy2724 2 CDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ-SKRGILTLKYPIEHGIITNW 80 (174)
Q Consensus 2 ~~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~p~~~g~i~d~ 80 (174)
.+||.++||||+||+++|+||||++.|++++||++|.....+.. ....+.+|++.++. ..|..+.+..|+++|++.||
T Consensus 7 ggdEv~alViDpGS~~traGyaged~Pk~ilPS~~G~~tk~~~d-~~~~~~~y~~~~ai~~pr~gmEv~~~i~nGlv~dW 85 (426)
T KOG0679|consen 7 GGDEVSALVIDPGSHTTRAGYAGEDSPKAILPSVYGKVTKTDGD-AEDKKGYYVDENAIHVPRPGMEVKTPIKNGLVEDW 85 (426)
T ss_pred cccccceEEEeCCCceEeccccCCCCccccccceeeeeecccCc-cccccceEeechhccCCCCCCeeccchhcCCcccH
Confidence 47999999999999999999999999999999999964222110 11224468888765 56778999999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCc
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~ 160 (174)
|.++.+|+|.|.++|+++|.+||++++||+++++..|+++.|++||+|++|++++++++++++||+|+.|+||||||+..
T Consensus 86 D~~~~~w~~~~~~~Lk~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~GrstalVvDiGa~~ 165 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQLKVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANGRSTALVVDIGATH 165 (426)
T ss_pred HHHHHHHHHHHhhhhhcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcCCCceEEEEecCCC
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCeec
Q psy2724 161 SHTVPIYEDHEG 172 (174)
Q Consensus 161 t~v~pV~dG~~~ 172 (174)
|+|+||+|||+.
T Consensus 166 ~svsPV~DG~Vl 177 (426)
T KOG0679|consen 166 TSVSPVHDGYVL 177 (426)
T ss_pred ceeeeeecceEe
Confidence 999999999986
No 5
>PTZ00004 actin-2; Provisional
Probab=100.00 E-value=9.7e-46 Score=300.78 Aligned_cols=172 Identities=85% Similarity=1.321 Sum_probs=158.9
Q ss_pred CCCCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCH
Q psy2724 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNW 80 (174)
Q Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~ 80 (174)
|--++.++||||+||+++|+||+|++.|++++||+++++++.....+..++..++|+++...++...+++|+++|+|.||
T Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~l~~Pi~~G~i~d~ 80 (378)
T PTZ00004 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQDKRGILTLKYPIEHGIVTNW 80 (378)
T ss_pred CCCCCCCeEEEECCCCeEEEeeCCCCCCCEEccceeEEecccccccCcCCCceEECchhhcccccceEcccCcCCEEcCH
Confidence 45588999999999999999999999999999999999887543333345678999998777777889999999999999
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCc
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~ 160 (174)
|+++.+|+|+|.++|++++.++|++++|++++++..|++++|+|||.|++|++++.+++++++|++|++||||||+|++.
T Consensus 81 d~~e~i~~~~~~~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~~tglVVDiG~~~ 160 (378)
T PTZ00004 81 DDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (378)
T ss_pred HHHHHHHHHHHHhhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCCceEEEEECCCCc
Confidence 99999999999889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeeeCCeec
Q psy2724 161 SHTVPIYEDHEG 172 (174)
Q Consensus 161 t~v~pV~dG~~~ 172 (174)
|+|+||+||++.
T Consensus 161 t~v~pV~dG~~l 172 (378)
T PTZ00004 161 SHTVPIYEGYSL 172 (378)
T ss_pred EEEEEEECCEEe
Confidence 999999999986
No 6
>KOG0676|consensus
Probab=100.00 E-value=3.4e-46 Score=297.23 Aligned_cols=164 Identities=82% Similarity=1.327 Sum_probs=155.4
Q ss_pred CCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHH
Q psy2724 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDM 83 (174)
Q Consensus 4 ~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~ 83 (174)
++.++||+|+||..+|+||+|++.|+.++||.++++++.....+..+++.++|+++..++ .++||+++|.|.|||++
T Consensus 5 ~~~~~vViDnGsg~~KaGfag~~~P~~v~ps~vg~~~~~~~~~~~~~~~~~vg~~a~~~~---~l~~Pie~Giv~~wd~m 81 (372)
T KOG0676|consen 5 DDIQAVVIDNGSGFVKAGFAGDDAPRAVFPSIVGRPRHQGVMAGMTQKDTYVGDEAESKR---TLKYPIERGIVTDWDDM 81 (372)
T ss_pred CCcceEEEECCCceeecccCCCCCCceecceeccccccccccccccccccccchhhhccc---cccCccccccccchHHH
Confidence 567999999999999999999999999999999999988777777788999999998777 68999999999999999
Q ss_pred HHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEE
Q psy2724 84 EKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHT 163 (174)
Q Consensus 84 ~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v 163 (174)
+.||+|+|+++|+++|+++|+++||++++|+..||+++|++||.|++|++++..++++ |++|++||+|||+|++.|++
T Consensus 82 e~iw~~if~~~L~~~Pee~pvllte~pl~p~~nREk~tqi~FE~fnvpa~yva~qavl--ya~g~ttG~VvD~G~gvt~~ 159 (372)
T KOG0676|consen 82 EKIWHHLFYSELLVAPEEHPVLLTEPPLNPKANREKLTQIMFETFNVPALYVAIQAVL--YASGRTTGLVVDSGDGVTHV 159 (372)
T ss_pred HHHHHHHHHHhhccCcccCceEeecCCCCchHhHHHHHHHhhhhcCccHhHHHHHHHH--HHcCCeeEEEEEcCCCceee
Confidence 9999999999999999999999999999999999999999999999999999887776 99999999999999999999
Q ss_pred EeeeCCeec
Q psy2724 164 VPIYEDHEG 172 (174)
Q Consensus 164 ~pV~dG~~~ 172 (174)
+||+|||+.
T Consensus 160 vPI~eG~~l 168 (372)
T KOG0676|consen 160 VPIYEGYAL 168 (372)
T ss_pred eeccccccc
Confidence 999999974
No 7
>PTZ00280 Actin-related protein 3; Provisional
Probab=100.00 E-value=1.3e-43 Score=291.47 Aligned_cols=168 Identities=45% Similarity=0.821 Sum_probs=152.9
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCcc---ccCCCcceeecchhhhccCcceeeccccCCeecCHH
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVM---VGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWD 81 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~ 81 (174)
..++||||+||+++|+||+|++.|++++||++++++..... .+....++++|+++...+..+.+++|+++|.|.|||
T Consensus 3 ~~~~iViD~GS~~~k~G~ag~~~P~~~~ps~v~~~~~~~~~~~~~~~~~~~~~vG~ea~~~~~~~~l~~Pi~~G~I~dwd 82 (414)
T PTZ00280 3 TLPVVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASKSYTLTYPMKHGIVEDWD 82 (414)
T ss_pred CCCeEEEECCCCceEeeeCCCCCCCEEecceeEEeccccccccccccccCCEEEcchhhhCcCCcEEecCccCCEeCCHH
Confidence 36799999999999999999999999999999998663211 011134678999988877778999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhc----------CCCeE
Q psy2724 82 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----------GRTTG 151 (174)
Q Consensus 82 ~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~----------g~~tg 151 (174)
.++.+|+|+|++.|+++|.++|++++||+++++..|++++|++||.|++|++++..+++||+||+ |++||
T Consensus 83 ~~e~l~~~~~~~~L~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~tg 162 (414)
T PTZ00280 83 LMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTG 162 (414)
T ss_pred HHHHHHHHHHHHhhccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCceeE
Confidence 99999999998899999999999999999999999999999999999999999999999999999 99999
Q ss_pred EEEecCCCceEEEeeeCCeec
Q psy2724 152 IVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 152 lVVDiG~~~t~v~pV~dG~~~ 172 (174)
||||+|++.|+|+||+||++.
T Consensus 163 lVVDiG~~~T~i~PV~~G~~l 183 (414)
T PTZ00280 163 TVIDSGDGVTHVIPVVDGYVI 183 (414)
T ss_pred EEEECCCCceEEEEEECCEEc
Confidence 999999999999999999985
No 8
>KOG0677|consensus
Probab=100.00 E-value=1.3e-43 Score=266.41 Aligned_cols=169 Identities=51% Similarity=0.912 Sum_probs=156.2
Q ss_pred CCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCC--ccccCCCcceeecchhhhccCcceeeccccCCeecCHH
Q psy2724 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG--VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWD 81 (174)
Q Consensus 4 ~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~ 81 (174)
|+.++||.|+|+..+|+||||+..|.++||+.+|+|.-.. ......-+++.+|+++.+-+..+.+.|||++|.+.|||
T Consensus 2 d~~~viV~DnGTGfVKcGyAg~NFP~~~FPs~VGRPilR~~e~~g~~~iKD~mvGdeaselRs~L~i~YPmeNGivrnwd 81 (389)
T KOG0677|consen 2 DSRNVIVCDNGTGFVKCGYAGENFPTHIFPSIVGRPILRAEEKVGNIEIKDLMVGDEASELRSLLDINYPMENGIVRNWD 81 (389)
T ss_pred CCCCeEEEeCCCceEEeccccCCCcccccchhcCchhhhhhhhccCeehhhheccchHHHHHHHHhcCCccccccccChH
Confidence 5689999999999999999999999999999999984321 11112237889999999989999999999999999999
Q ss_pred HHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCce
Q psy2724 82 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 161 (174)
Q Consensus 82 ~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t 161 (174)
.++++|+|.|.++|+++|.++.+++|||+++|.+.|++|+|.+||+|+|.++++.-|+++++||.|..||+|||+|.+.|
T Consensus 82 dM~h~WDytF~ekl~idp~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQAVLtLYAQGL~tGvVvDSGDGVT 161 (389)
T KOG0677|consen 82 DMEHVWDYTFGEKLKIDPTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQAVLTLYAQGLLTGVVVDSGDGVT 161 (389)
T ss_pred HHHHHHHhhhhhhccCCCccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHHHHHHHHHhcccceEEEecCCCee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeeeCCeec
Q psy2724 162 HTVPIYEDHEG 172 (174)
Q Consensus 162 ~v~pV~dG~~~ 172 (174)
||+||++|++.
T Consensus 162 Hi~PVye~~~l 172 (389)
T KOG0677|consen 162 HIVPVYEGFVL 172 (389)
T ss_pred EEeeeecceeh
Confidence 99999999874
No 9
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=100.00 E-value=1.2e-42 Score=283.76 Aligned_cols=165 Identities=50% Similarity=0.905 Sum_probs=146.3
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHH
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDD 82 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~ 82 (174)
||+.++||||+||++||+||+|++.|++++||++++++.... ..++++|++.........+.+|+++|.+.|||.
T Consensus 1 ~d~~~~vViD~Gs~~~k~G~age~~P~~v~ps~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~~~p~~~g~i~~~~~ 75 (393)
T PF00022_consen 1 GDENKPVVIDNGSSTIKAGFAGEDLPRVVIPSVVGRPRDKNS-----SNDYYVGDEALSPRSNLELRSPIENGVIVDWDA 75 (393)
T ss_dssp -TSSSEEEEEECSSEEEEEETTSSS-SEEEESEEEEESSSSS-----SSSCEETHHHHHTGTGEEEEESEETTEESSHHH
T ss_pred CCCCCEEEEECCCceEEEEECCCCCCCCcCCCcccccccccc-----ceeEEeecccccchhheeeeeeccccccccccc
Confidence 699999999999999999999999999999999999877531 126789988666667788999999999999999
Q ss_pred HHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceE
Q psy2724 83 MEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 162 (174)
Q Consensus 83 ~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~ 162 (174)
++.+|+|+|.+.|++++.++|+++++|+++++..|++++|++||+|++|+++++++++||+|++|++||||||+|++.|+
T Consensus 76 ~e~i~~~~~~~~l~~~~~~~~vll~~~~~~~~~~r~~l~e~lfE~~~~~~v~~~~~~~~a~~~~g~~tglVVD~G~~~t~ 155 (393)
T PF00022_consen 76 LEEIWDYIFSNLLKVDPSDHPVLLTEPPFNPRSQREKLAEILFEKFGVPSVYFIPSPLLALYASGRTTGLVVDIGYSSTS 155 (393)
T ss_dssp HHHHHHHHHHTTT-SSGGGSEEEEEESTT--HHHHHHHHHHHHHTS--SEEEEEEHHHHHHHHTTBSSEEEEEESSS-EE
T ss_pred cccccccccccccccccccceeeeeccccCCchhhhhhhhhhhcccccceeeeeecccccccccccccccccccceeeee
Confidence 99999999988899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeeeCCeec
Q psy2724 163 TVPIYEDHEG 172 (174)
Q Consensus 163 v~pV~dG~~~ 172 (174)
|+||+||++.
T Consensus 156 v~pV~dG~~~ 165 (393)
T PF00022_consen 156 VVPVVDGYVL 165 (393)
T ss_dssp EEEEETTEE-
T ss_pred eeeeeecccc
Confidence 9999999986
No 10
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=100.00 E-value=1.1e-40 Score=270.68 Aligned_cols=166 Identities=70% Similarity=1.172 Sum_probs=151.3
Q ss_pred CceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHHHH
Q psy2724 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEK 85 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~ 85 (174)
.++||||+||+++|+||+|++.|++++||+++++++.....+ ..+.+++|+++...++...+++|+++|.+.|||.++.
T Consensus 1 ~~~iviD~Gs~~~k~G~~~~~~P~~~~ps~v~~~~~~~~~~~-~~~~~~~G~~a~~~~~~~~~~~P~~~G~i~d~~~~e~ 79 (373)
T smart00268 1 TPAIVIDNGSGTIKAGFAGEDEPQVVFPSIVGRPKDGKGMVG-DAKDTFVGDEAQEKRGGLELKYPIEHGIVENWDDMEK 79 (373)
T ss_pred CCeEEEECCCCcEEEeeCCCCCCcEEccceeeEecccccccC-CCcceEecchhhhcCCCceecCCCcCCEEeCHHHHHH
Confidence 368999999999999999999999999999999876431111 2346789999876666668999999999999999999
Q ss_pred HHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEEEe
Q psy2724 86 IWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVP 165 (174)
Q Consensus 86 l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~p 165 (174)
+|+|+|.+.|++++.++|+++++|.++++..|++++|++||.|++|++++++++++++|++|+++|+|||+|++.|+|+|
T Consensus 80 i~~~~~~~~l~~~~~~~~vll~~p~~~~~~~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~v~p 159 (373)
T smart00268 80 IWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMFETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVP 159 (373)
T ss_pred HHHHHHhhhcCCCCccCeeEEecCCCCCHHHHHHHHHHhhccCCCCeEEEeccHHHHHHhCCCCEEEEEecCCCcceEEE
Confidence 99999987899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCeec
Q psy2724 166 IYEDHEG 172 (174)
Q Consensus 166 V~dG~~~ 172 (174)
|+||++.
T Consensus 160 v~~G~~~ 166 (373)
T smart00268 160 VVDGYVL 166 (373)
T ss_pred EECCEEc
Confidence 9999986
No 11
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=100.00 E-value=7.5e-40 Score=265.72 Aligned_cols=166 Identities=73% Similarity=1.214 Sum_probs=150.9
Q ss_pred eEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccC-cceeeccccCCeecCHHHHHHH
Q psy2724 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRG-ILTLKYPIEHGIITNWDDMEKI 86 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~p~~~g~i~d~~~~~~l 86 (174)
+||||+||+++|+||+|++.|++++||++++++......+.++...++|+++...++ ...+++|+++|.+.||+.++.+
T Consensus 1 ~iViD~Gs~~~r~G~a~~~~p~~~~ps~v~~~~~~~~~~~~~~~~~~~G~~a~~~~~~~~~~~~P~~~G~i~d~~~~e~~ 80 (371)
T cd00012 1 AVVIDNGSGTIKAGFAGEDAPRVVFPSCVGRPKHQSVMVGAGDKDYFVGEEALEKRGLGLELIYPIEHGIVVDWDDMEKI 80 (371)
T ss_pred CEEEECCCCeEEEEeCCCCCCceEeeccceeecCcccccccCCCceEEchhhhhCCCCceEEcccccCCEEeCHHHHHHH
Confidence 589999999999999999999999999999987653222333467899999876554 3789999999999999999999
Q ss_pred HHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEEEee
Q psy2724 87 WHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 87 ~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV 166 (174)
|+|+|.+.|..++.++++++++|+++++..|++++|++||.+++|++++++++++++|++|+++|+|||+|++.|+|+||
T Consensus 81 ~~~~~~~~l~~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~~~~lVVDiG~~~t~i~pv 160 (371)
T cd00012 81 WDHLFFNELKVNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGRTTGLVVDSGDGVTHVVPV 160 (371)
T ss_pred HHHHHHHhcCCCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCCCeEEEEECCCCeeEEEEE
Confidence 99999888888888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCeecC
Q psy2724 167 YEDHEGE 173 (174)
Q Consensus 167 ~dG~~~~ 173 (174)
+||++..
T Consensus 161 ~~G~~~~ 167 (371)
T cd00012 161 YDGYVLP 167 (371)
T ss_pred ECCEEch
Confidence 9999853
No 12
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=100.00 E-value=2.2e-39 Score=265.75 Aligned_cols=171 Identities=60% Similarity=1.053 Sum_probs=154.5
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeC-CCCccccCCCcceeecchhhhccC--cceeeccccCCeecC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDEAQSKRG--ILTLKYPIEHGIITN 79 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~-~~~~~~~~~~~~~~~g~~~~~~~~--~~~~~~p~~~g~i~d 79 (174)
+++.+++|||+||+++|+||+|++.|++++|+++++.+ +........+++.++|+++...++ ...+++|+++|.|.|
T Consensus 3 ~~~~~~iVIDnGS~~~k~Gfag~~~P~~V~ps~~~~~~~~~~~~~~~~~~~~~v~ne~~~~~~~~~~~~~~p~~~g~i~~ 82 (444)
T COG5277 3 GDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEAQNDRDNSLLELRYPIENGIILN 82 (444)
T ss_pred CCCCCeEEEeCCCceEEeeecCCCCceeecccccccccccccccccccccccccCchhhhccCCccceeecccccCccCC
Confidence 46667799999999999999999999999999999886 222222334577899999876555 688999999999999
Q ss_pred HHHHHHHHHHhhcc--ccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCC--eEEEEe
Q psy2724 80 WDDMEKIWHHTFYN--ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLD 155 (174)
Q Consensus 80 ~~~~~~l~~~~~~~--~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~--tglVVD 155 (174)
|++++++|+|.|.+ .+..++.++|++++||++++.+.|++++|++||+|++|++++..++++++|+.|+. +|+|||
T Consensus 83 W~~~e~~w~~~~~~~~~~~~~~~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~~~~g~ViD 162 (444)
T COG5277 83 WDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVID 162 (444)
T ss_pred cHHHHHHHHHhhcchhhccCCCcCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCCCCceEEEE
Confidence 99999999999988 68888899999999999999999999999999999999999999999999999999 999999
Q ss_pred cCCCceEEEeeeCCeecC
Q psy2724 156 SGDGVSHTVPIYEDHEGE 173 (174)
Q Consensus 156 iG~~~t~v~pV~dG~~~~ 173 (174)
+|++.|+|+||+||+++.
T Consensus 163 ~G~~~t~v~PV~DG~~l~ 180 (444)
T COG5277 163 SGDSVTHVIPVVDGIVLP 180 (444)
T ss_pred cCCCceeeEeeecccccc
Confidence 999999999999999863
No 13
>KOG0681|consensus
Probab=100.00 E-value=9.9e-34 Score=229.92 Aligned_cols=161 Identities=34% Similarity=0.715 Sum_probs=141.2
Q ss_pred CceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCc-ceeeccccCCeecCHHHHH
Q psy2724 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI-LTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~p~~~g~i~d~~~~~ 84 (174)
..+|||||||+.+||||+|+..|+++|++++.++++... +..-.++|++.....+. ...+.|+++.+|+||+.+|
T Consensus 23 ~~piVIDNGS~~~RaGw~ge~eP~lvFrNvl~r~Rdrk~----~~s~t~vgnd~~~~~~~Rs~~rSPFd~nVvtNwel~E 98 (645)
T KOG0681|consen 23 TIPIVIDNGSYECRAGWAGEKEPRLVFRNVLTRPRDRKL----GASVTLVGNDILNFQGVRSSPRSPFDRNVVTNWELME 98 (645)
T ss_pred CCcEEEeCCceeEeecccCCCCccchhhhhhcccccccc----ccccccccchhhhhhhhhccCCCCCcCCccccHHHHH
Confidence 678999999999999999999999999999999986531 12234788776543332 4578899999999999999
Q ss_pred HHHHHhhccccccCCC--CCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhh-cC---CCeEEEEecCC
Q psy2724 85 KIWHHTFYNELRVAPE--EHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA-SG---RTTGIVLDSGD 158 (174)
Q Consensus 85 ~l~~~~~~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~-~g---~~tglVVDiG~ 158 (174)
.+++|+| .+||++++ +||+++||+..+|...|++|.|+|||.||+|+|.+.-.++.|.|. .+ ..+|+||++||
T Consensus 99 ~ilDY~F-~~LG~~~~~idhPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDslfS~~hN~~~~~~~~~liis~g~ 177 (645)
T KOG0681|consen 99 QILDYIF-GKLGVDGQGIDHPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSLFSFYHNYGKSSNKSGLIISMGH 177 (645)
T ss_pred HHHHHHH-HhcCCCccCCCCCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhHHHHhhccCcccCcceEEEecCC
Confidence 9999999 89999985 799999999999999999999999999999999999999999994 33 34799999999
Q ss_pred CceEEEeeeCCee
Q psy2724 159 GVSHTVPIYEDHE 171 (174)
Q Consensus 159 ~~t~v~pV~dG~~ 171 (174)
++|+|+||.||..
T Consensus 178 ~~T~vipvldG~~ 190 (645)
T KOG0681|consen 178 SATHVIPVLDGRL 190 (645)
T ss_pred CcceeEEEecCch
Confidence 9999999999974
No 14
>KOG0678|consensus
Probab=99.97 E-value=1.9e-31 Score=205.84 Aligned_cols=165 Identities=45% Similarity=0.794 Sum_probs=146.3
Q ss_pred eEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCc--------cccCCCcceeecchhhhccCcceeeccccCCeecC
Q psy2724 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGV--------MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITN 79 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~--------~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d 79 (174)
++|+|+|+..+|.||+|...|++++|++++....... .-+..+.+.++|+++.. ...+.+.+|+++|.+.|
T Consensus 6 p~V~d~Gtgytklg~agn~~p~~i~p~~ia~~~~~~~s~~~~~~~~~~~~dldf~ig~eal~-~~~ysl~ypiRhg~ve~ 84 (415)
T KOG0678|consen 6 PCVIDNGTGYTKLGYAGNTEPQFIIPTAIAVKESAAVSSKATRRVKRGTEDLDFFIGDEALD-ATTYSLKYPIRHGQVED 84 (415)
T ss_pred ceeeccCcceeeeeccccCCcccccceeEEeccccccccchhhhhhccccccceecccHHHh-hcccccccceecccccc
Confidence 3999999999999999999999999999986532211 01233457899999987 55788999999999999
Q ss_pred HHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhc--------CCCeE
Q psy2724 80 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS--------GRTTG 151 (174)
Q Consensus 80 ~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~--------g~~tg 151 (174)
||.|+++|+..+.+.|+.+|++|..||+||++++++.|+.++|++||.|++|.+++..++++|+-+. -.-||
T Consensus 85 wd~mer~~~q~ifkylr~ePedh~fLlteppln~penreytaeImfEsfnvpglyiAVqavLALaaswts~~v~er~ltG 164 (415)
T KOG0678|consen 85 WDLMERFWEQCIFKYLRAEPEDHYFLLTEPPLNQPENREYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQVGERFLTG 164 (415)
T ss_pred HHHHHHHHhhhhhhhhcCCcccceEEecCCCCCCchhhHHHHHhhhhhccCchHHHHHHHHHHHHHHHHHhhhhhheeee
Confidence 9999999999999999999999999999999999999999999999999999999999999987643 14699
Q ss_pred EEEecCCCceEEEeeeCCeecC
Q psy2724 152 IVLDSGDGVSHTVPIYEDHEGE 173 (174)
Q Consensus 152 lVVDiG~~~t~v~pV~dG~~~~ 173 (174)
+|+|.|.+.|+|+||.+||++.
T Consensus 165 ~VidsGdgvThvipvaEgyVig 186 (415)
T KOG0678|consen 165 IVIDSGDGVTHVIPVAEGYVIG 186 (415)
T ss_pred EEEecCCCeeEEEEeecceEEe
Confidence 9999999999999999999974
No 15
>KOG0680|consensus
Probab=99.97 E-value=5.4e-31 Score=202.91 Aligned_cols=161 Identities=26% Similarity=0.481 Sum_probs=141.3
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCc--ceeeccccCCeecCHHH
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIITNWDD 82 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~p~~~g~i~d~~~ 82 (174)
+.++||||||++++|+|+++.+.|. ++||++.+.+... ++.++|++..+.++. +..++|+++|++++|+.
T Consensus 2 ~~~tiVlDNGay~~KiG~s~~~~p~-~vpNcl~kaK~~~-------rr~f~~nei~ec~D~ssL~y~rp~erGyLvnW~t 73 (400)
T KOG0680|consen 2 ETTTIVLDNGAYNIKIGPSTNKKPF-VVPNCLAKAKFGR-------RRSFLANEIDECKDISSLFYRRPHERGYLVNWDT 73 (400)
T ss_pred CCceEEEcCCceeEEeccCCCCCce-eccchhhhccccc-------chhhhhhhhhhccCccceEEeehhhcceeEeehh
Confidence 3789999999999999999999998 4699999888753 568999998776654 56778999999999999
Q ss_pred HHHHHHHhhccc-cccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhc----C-------CCe
Q psy2724 83 MEKIWHHTFYNE-LRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS----G-------RTT 150 (174)
Q Consensus 83 ~~~l~~~~~~~~-L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~----g-------~~t 150 (174)
...+|+|+|.+. ++++..++.+++|||.++-++..+.+.|++||+|++.+++-...+.++++-. . ..+
T Consensus 74 q~~vWDy~f~~~~~~~~~~~~~ivlTep~~~~psi~~~t~eilFEey~fd~v~kttaa~lva~~~~~~~ne~~tt~~~~c 153 (400)
T KOG0680|consen 74 QSQVWDYCFGNPGFDVEGKDHNIVLTEPCMTFPSIQEHTDEILFEEYQFDAVLKTTAAVLVAFTKYVRNNEDSTTTSSEC 153 (400)
T ss_pred HHHHHHHHhcCCCcCcccCcceEEEecccccccchhhhHHHHHHHHhccceEeecCHHHhcchhhhccCCccccccccce
Confidence 999999999643 4466779999999999999999999999999999999999999999999862 1 248
Q ss_pred EEEEecCCCceEEEeeeCCeecC
Q psy2724 151 GIVLDSGDGVSHTVPIYEDHEGE 173 (174)
Q Consensus 151 glVVDiG~~~t~v~pV~dG~~~~ 173 (174)
++|||+|+++|+|+|+++|.+.+
T Consensus 154 ~lVIDsGysfThIip~v~g~~~~ 176 (400)
T KOG0680|consen 154 CLVIDSGYSFTHIIPVVKGIPYY 176 (400)
T ss_pred EEEEeCCCceEEEehhhcCcchh
Confidence 99999999999999999998753
No 16
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=3e-26 Score=183.71 Aligned_cols=155 Identities=17% Similarity=0.198 Sum_probs=131.2
Q ss_pred EEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhc----cCcceeeccccCCeecCHHHHH
Q psy2724 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
++||+||+++|+|+.++. +.+..||+++..+.. ++..++|+++.+. +....+.+|+++|.|.||+.++
T Consensus 11 vgiDlGt~~t~i~~~~~~-~~~~~ps~v~~~~~~-------~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~e 82 (335)
T PRK13930 11 IGIDLGTANTLVYVKGKG-IVLNEPSVVAIDTKT-------GKVLAVGEEAKEMLGRTPGNIEAIRPLKDGVIADFEATE 82 (335)
T ss_pred eEEEcCCCcEEEEECCCC-EEEecCCEEEEECCC-------CeEEEEcHHHHHhhhcCCCCeEEeecCCCCeEcCHHHHH
Confidence 999999999999999775 466789999887532 1457999998754 3457889999999999999999
Q ss_pred HHHHHhhccccccCC-CCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCC
Q psy2724 85 KIWHHTFYNELRVAP-EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 158 (174)
Q Consensus 85 ~l~~~~~~~~L~~~~-~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~ 158 (174)
.+|+|++.+.+...+ ...+++++.|...+...|+.+.+ +||.++++.++++++|++|+|++|. .+++|||+|+
T Consensus 83 ~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~-~~e~~g~~~~~lv~ep~AAa~a~g~~~~~~~~~lVvDiG~ 161 (335)
T PRK13930 83 AMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVRE-AAEHAGAREVYLIEEPMAAAIGAGLPVTEPVGNMVVDIGG 161 (335)
T ss_pred HHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHH-HHHHcCCCeEEecccHHHHHHhcCCCcCCCCceEEEEeCC
Confidence 999999954444323 36789999999999888887776 7999999999999999999999986 5789999999
Q ss_pred CceEEEeeeCCeec
Q psy2724 159 GVSHTVPIYEDHEG 172 (174)
Q Consensus 159 ~~t~v~pV~dG~~~ 172 (174)
+.|+++|+.+|++.
T Consensus 162 gttdvs~v~~g~~~ 175 (335)
T PRK13930 162 GTTEVAVISLGGIV 175 (335)
T ss_pred CeEEEEEEEeCCEE
Confidence 99999999999764
No 17
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=8.3e-26 Score=181.17 Aligned_cols=155 Identities=17% Similarity=0.196 Sum_probs=129.4
Q ss_pred ceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhc----cCcceeeccccCCeecCHHH
Q psy2724 7 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIITNWDD 82 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~ 82 (174)
+.|+||+||+++|+|++|++. .+.+||+++.++... +.+++|+++... +....+.+|+++|.+.||+.
T Consensus 6 ~~igIDlGt~~~~i~~~~~~~-~~~~ps~v~~~~~~~-------~~~~vG~~a~~~~~~~~~~~~~~~pi~~G~i~d~~~ 77 (334)
T PRK13927 6 NDLGIDLGTANTLVYVKGKGI-VLNEPSVVAIRTDTK-------KVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFDV 77 (334)
T ss_pred ceeEEEcCcceEEEEECCCcE-EEecCCEEEEECCCC-------eEEEecHHHHHHhhcCCCCEEEEecCCCCeecCHHH
Confidence 359999999999999999876 567999999976521 356899998754 35678899999999999999
Q ss_pred HHHHHHHhhccccccCCCCC-ceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEec
Q psy2724 83 MEKIWHHTFYNELRVAPEEH-PILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDS 156 (174)
Q Consensus 83 ~~~l~~~~~~~~L~~~~~~~-~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDi 156 (174)
++.+|++++.+.++. +.++ .++++.| ......++++++.+||.++++.++++++|++|+|++|. ++++|||+
T Consensus 78 ~~~ll~~~~~~~~~~-~~~~~~~vi~vP-~~~~~~~r~~~~~a~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lvvDi 155 (334)
T PRK13927 78 TEKMLKYFIKKVHKN-FRPSPRVVICVP-SGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTGSMVVDI 155 (334)
T ss_pred HHHHHHHHHHHHhhc-cCCCCcEEEEeC-CCCCHHHHHHHHHHHHHcCCCeeccCCChHHHHHHcCCcccCCCeEEEEEe
Confidence 999999999776666 5556 4566666 55555666788999999999999999999999999986 56799999
Q ss_pred CCCceEEEee-eCCee
Q psy2724 157 GDGVSHTVPI-YEDHE 171 (174)
Q Consensus 157 G~~~t~v~pV-~dG~~ 171 (174)
|++.|+++|+ ++|++
T Consensus 156 Gggttdvs~v~~~~~~ 171 (334)
T PRK13927 156 GGGTTEVAVISLGGIV 171 (334)
T ss_pred CCCeEEEEEEecCCeE
Confidence 9999999999 67665
No 18
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.90 E-value=2.5e-22 Score=161.07 Aligned_cols=158 Identities=16% Similarity=0.167 Sum_probs=127.3
Q ss_pred EEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhc----cCcceeeccccCCeecCHHHHH
Q psy2724 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
+-||+||.++++-..+ ..-.+..||+++..++.. +...+.+++|+++... +....+.+|+++|.|.||+.++
T Consensus 5 ~giDlGt~~s~i~~~~-~~~~~~~psvv~~~~~~~---~~~~~~~~vG~~A~~~~~~~~~~~~~~~pi~~G~i~d~~~~~ 80 (333)
T TIGR00904 5 IGIDLGTANTLVYVKG-RGIVLNEPSVVAIRTDRD---AKTKSILAVGHEAKEMLGKTPGNIVAIRPMKDGVIADFEVTE 80 (333)
T ss_pred eEEecCcceEEEEECC-CCEEEecCCEEEEecCCC---CCCCeEEEEhHHHHHhhhcCCCCEEEEecCCCCEEEcHHHHH
Confidence 8899999999995433 333456799998765421 0012347899998754 3567889999999999999999
Q ss_pred HHHHHhhccccccCCCC-CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCC
Q psy2724 85 KIWHHTFYNELRVAPEE-HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGD 158 (174)
Q Consensus 85 ~l~~~~~~~~L~~~~~~-~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~ 158 (174)
.+|+|++.+.++..... .+++++.|..++..+|+. ++.+||.++++.++++++|++|+|++|. .+++|||+|+
T Consensus 81 ~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~-~~~~~~~ag~~~~~li~ep~aaa~~~g~~~~~~~~~lVvDiG~ 159 (333)
T TIGR00904 81 KMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRA-VKESALSAGAREVYLIEEPMAAAIGAGLPVEEPTGSMVVDIGG 159 (333)
T ss_pred HHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHH-HHHHHHHcCCCeEEEecCHHHHHHhcCCcccCCceEEEEEcCC
Confidence 99999997666532222 269999999999998887 6668999999999999999999999987 7899999999
Q ss_pred CceEEEee-eCCee
Q psy2724 159 GVSHTVPI-YEDHE 171 (174)
Q Consensus 159 ~~t~v~pV-~dG~~ 171 (174)
+.|+++++ ++|++
T Consensus 160 gttdvs~v~~~~~~ 173 (333)
T TIGR00904 160 GTTEVAVISLGGIV 173 (333)
T ss_pred CeEEEEEEEeCCEE
Confidence 99999999 77765
No 19
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.89 E-value=4.1e-22 Score=159.96 Aligned_cols=155 Identities=13% Similarity=0.248 Sum_probs=129.0
Q ss_pred ceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhcc----CcceeeccccCCeecCHHH
Q psy2724 7 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR----GILTLKYPIEHGIITNWDD 82 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~~~p~~~g~i~d~~~ 82 (174)
..+-||+||.++++ |.....=....||+++..... ++-+++|++|.... ....+.+|+++|.|.|||.
T Consensus 5 ~~~giDlGt~~~~i-~~~~~~~~~~~ps~va~~~~~-------~~~~~vG~~A~~~~~~~p~~~~~~~pi~~G~I~d~d~ 76 (335)
T PRK13929 5 TEIGIDLGTANILV-YSKNKGIILNEPSVVAVDTET-------KAVLAIGTEAKNMIGKTPGKIVAVRPMKDGVIADYDM 76 (335)
T ss_pred CeEEEEcccccEEE-EECCCcEEecCCcEEEEECCC-------CeEEEeCHHHHHhhhcCCCcEEEEecCCCCccCCHHH
Confidence 35899999999998 543322134579999886442 13468999997543 5577889999999999999
Q ss_pred HHHHHHHhhcc---ccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEE
Q psy2724 83 MEKIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVL 154 (174)
Q Consensus 83 ~~~l~~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVV 154 (174)
.+.+|++++.+ .++.++++++++++.|+..+..+|+.+.+ +||.++++.++++.+|++|++++| ..+++||
T Consensus 77 ~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~-a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lvv 155 (335)
T PRK13929 77 TTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD-AVKNCGAKNVHLIEEPVAAAIGADLPVDEPVANVVV 155 (335)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH-HHHHcCCCeeEeecCHHHHHHhcCCCcCCCceEEEE
Confidence 99999999963 56666666799999999999999999999 899999999999999999999997 5789999
Q ss_pred ecCCCceEEEee-eCCe
Q psy2724 155 DSGDGVSHTVPI-YEDH 170 (174)
Q Consensus 155 DiG~~~t~v~pV-~dG~ 170 (174)
|+|++.|+++++ ++|+
T Consensus 156 DiG~gtt~v~vi~~~~~ 172 (335)
T PRK13929 156 DIGGGTTEVAIISFGGV 172 (335)
T ss_pred EeCCCeEEEEEEEeCCE
Confidence 999999999999 5554
No 20
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.83 E-value=2.8e-19 Score=143.66 Aligned_cols=153 Identities=18% Similarity=0.226 Sum_probs=122.2
Q ss_pred EEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhc----cCcceeeccccCCeecCHHHHH
Q psy2724 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
+-||+||.++++-..+ ..-.+..||+++...... +-.++|+++... .....+.+|+++|.|.||+.++
T Consensus 6 ~gIDlGt~~~~i~~~~-~~~v~~~psvv~~~~~~~-------~i~~vG~~A~~~~~~~p~~~~~~~pi~~G~i~d~~~~~ 77 (336)
T PRK13928 6 IGIDLGTANVLVYVKG-KGIVLNEPSVVAIDKNTN-------KVLAVGEEARRMVGRTPGNIVAIRPLRDGVIADYDVTE 77 (336)
T ss_pred eEEEcccccEEEEECC-CCEEEccCCEEEEECCCC-------eEEEecHHHHHhhhcCCCCEEEEccCCCCeEecHHHHH
Confidence 8999999999995543 333445799988774421 345889998743 2456778999999999999999
Q ss_pred HHHHHhhccccccC-CCCCc-eEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecC
Q psy2724 85 KIWHHTFYNELRVA-PEEHP-ILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSG 157 (174)
Q Consensus 85 ~l~~~~~~~~L~~~-~~~~~-vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG 157 (174)
.+|+|++ +++... ..++| ++++.|...+. .+++.++.+||..+++.+.++++|++|++++|. ..++|+|+|
T Consensus 78 ~~l~~~~-~~~~~~~~~~~p~~vitvP~~~~~-~~r~~~~~a~~~ag~~~~~li~ep~Aaa~~~g~~~~~~~~~lVvDiG 155 (336)
T PRK13928 78 KMLKYFI-NKACGKRFFSKPRIMICIPTGITS-VEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVVDIG 155 (336)
T ss_pred HHHHHHH-HHHhccCCCCCCeEEEEeCCCCCH-HHHHHHHHHHHHcCCCceEecccHHHHHHHcCCcccCCCeEEEEEeC
Confidence 9999999 444333 44666 88888666554 566778888999999999999999999999986 779999999
Q ss_pred CCceEEEeeeCCee
Q psy2724 158 DGVSHTVPIYEDHE 171 (174)
Q Consensus 158 ~~~t~v~pV~dG~~ 171 (174)
++.|+++++..|.+
T Consensus 156 ggttdvsvv~~g~~ 169 (336)
T PRK13928 156 GGTTDIAVLSLGGI 169 (336)
T ss_pred CCeEEEEEEEeCCE
Confidence 99999999988854
No 21
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.80 E-value=1.5e-18 Score=138.08 Aligned_cols=156 Identities=15% Similarity=0.250 Sum_probs=117.9
Q ss_pred ceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhh----ccCcceeeccccCCeecCHHH
Q psy2724 7 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS----KRGILTLKYPIEHGIITNWDD 82 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~p~~~g~i~d~~~ 82 (174)
+-+-||+||.++++ |..+..=.+..||+++..+... +-..+|++|.. .+....+.+|+++|+|.|++.
T Consensus 2 ~~igIDLGT~~t~i-~~~~~Giv~~epSvVA~~~~~~-------~i~avG~~A~~m~gktp~~i~~~~Pl~~GvI~D~~~ 73 (326)
T PF06723_consen 2 KDIGIDLGTSNTRI-YVKGKGIVLNEPSVVAYDKDTG-------KILAVGDEAKAMLGKTPDNIEVVRPLKDGVIADYEA 73 (326)
T ss_dssp SEEEEEE-SSEEEE-EETTTEEEEEEES-EEEETTT---------EEEESHHHHTTTTS-GTTEEEE-SEETTEESSHHH
T ss_pred CceEEecCcccEEE-EECCCCEEEecCcEEEEECCCC-------eEEEEhHHHHHHhhcCCCccEEEccccCCcccCHHH
Confidence 45889999999999 5554444456799999887642 45679999864 356688999999999999999
Q ss_pred HHHHHHHhhcccccc-CCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEec
Q psy2724 83 MEKIWHHTFYNELRV-APEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDS 156 (174)
Q Consensus 83 ~~~l~~~~~~~~L~~-~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDi 156 (174)
.+.+++|++++..+. ......++++.|...+..+|+.+.+.+ ...++.+++++++|+++++++| ....+|||+
T Consensus 74 ~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~-~~aGa~~V~li~ep~AaAiGaGl~i~~~~g~miVDI 152 (326)
T PF06723_consen 74 AEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA-RQAGARKVYLIEEPIAAAIGAGLDIFEPRGSMIVDI 152 (326)
T ss_dssp HHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH-HHTT-SEEEEEEHHHHHHHHTT--TTSSS-EEEEEE
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH-HHcCCCEEEEecchHHHHhcCCCCCCCCCceEEEEE
Confidence 999999999665554 234567899999999999999998887 5699999999999999999998 357799999
Q ss_pred CCCceEEEeeeCCee
Q psy2724 157 GDGVSHTVPIYEDHE 171 (174)
Q Consensus 157 G~~~t~v~pV~dG~~ 171 (174)
|++.|.+.-+..|-+
T Consensus 153 G~GtTdiavislggi 167 (326)
T PF06723_consen 153 GGGTTDIAVISLGGI 167 (326)
T ss_dssp -SS-EEEEEEETTEE
T ss_pred CCCeEEEEEEECCCE
Confidence 999999999988765
No 22
>KOG0797|consensus
Probab=99.79 E-value=1.3e-18 Score=141.45 Aligned_cols=109 Identities=14% Similarity=0.210 Sum_probs=97.9
Q ss_pred cceeeccccCCeecC----------HHHHHHHHHHhhccccccCCC---CCceEEeeCCCCChHHHHHHHHHhhhhcCCC
Q psy2724 65 ILTLKYPIEHGIITN----------WDDMEKIWHHTFYNELRVAPE---EHPILLTEAPLNPKANREKMTQIMFETFNTP 131 (174)
Q Consensus 65 ~~~~~~p~~~g~i~d----------~~~~~~l~~~~~~~~L~~~~~---~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~ 131 (174)
.+.+++|+++|...- .+.+.+||+|++.+.|++.++ .+.++++.|-...+..-+.+..++|-+++|.
T Consensus 178 ~y~l~~Pir~G~fNv~~~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~ 257 (618)
T KOG0797|consen 178 PYCLYHPIRRGHFNVSPPYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFN 257 (618)
T ss_pred cceeecccccceeccCCcchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccc
Confidence 477899999997632 467889999999899998874 6889999998888888888999999999999
Q ss_pred eeeeehhhhHHhhhcCCCeEEEEecCCCceEEEeeeCCeecC
Q psy2724 132 AMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDHEGE 173 (174)
Q Consensus 132 sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~dG~~~~ 173 (174)
++.++.++++++||+|.++++|||||++.|+|+||-||.+.+
T Consensus 258 ~~~v~QESlaatfGaGlss~CVVdiGAQkTsIaCVEdGvs~~ 299 (618)
T KOG0797|consen 258 SAVVHQESLAATFGAGLSSACVVDIGAQKTSIACVEDGVSLP 299 (618)
T ss_pred eEEEEhhhhHHHhcCCccceeEEEccCcceeEEEeecCcccc
Confidence 999999999999999999999999999999999999998754
No 23
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.64 E-value=9.3e-15 Score=114.01 Aligned_cols=157 Identities=16% Similarity=0.215 Sum_probs=123.7
Q ss_pred CceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhh----ccCcceeeccccCCeecCHH
Q psy2724 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQS----KRGILTLKYPIEHGIITNWD 81 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~----~~~~~~~~~p~~~g~i~d~~ 81 (174)
...+-||+|+.++++ |..+..=.+..||+++..+... ...-..+|+||.+ ..++....+|+++|+|.|++
T Consensus 6 s~diGIDLGTanTlV-~~k~kgIVl~ePSVVAi~~~~~-----~~~v~aVG~eAK~MlGrTP~ni~aiRPmkdGVIAd~~ 79 (342)
T COG1077 6 SNDIGIDLGTANTLV-YVKGKGIVLNEPSVVAIESEGK-----TKVVLAVGEEAKQMLGRTPGNIVAIRPMKDGVIADFE 79 (342)
T ss_pred cccceeeecccceEE-EEcCceEEecCceEEEEeecCC-----CceEEEehHHHHHHhccCCCCceEEeecCCcEeecHH
Confidence 357899999999999 4444444566799998876421 1245689999874 45668889999999999999
Q ss_pred HHHHHHHHhhccccccC--CCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEE
Q psy2724 82 DMEKIWHHTFYNELRVA--PEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVL 154 (174)
Q Consensus 82 ~~~~l~~~~~~~~L~~~--~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVV 154 (174)
..+.+++|+.++..+-. ...-.++++.|.-.+...|+.+-|.+ ++-+...++++++|.+|++++| .+-.+||
T Consensus 80 ~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ea~-~~aGa~~V~lieEp~aAAIGaglpi~ep~G~mvv 158 (342)
T COG1077 80 VTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAA-ESAGAREVYLIEEPMAAAIGAGLPIMEPTGSMVV 158 (342)
T ss_pred HHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHHHHH-HhccCceEEEeccHHHHHhcCCCcccCCCCCEEE
Confidence 99999999885443222 22335778888888888888887776 6688899999999999999998 3568999
Q ss_pred ecCCCceEEEeeeCC
Q psy2724 155 DSGDGVSHTVPIYED 169 (174)
Q Consensus 155 DiG~~~t~v~pV~dG 169 (174)
|+|.+.|.+.-+..|
T Consensus 159 DIGgGTTevaVISlg 173 (342)
T COG1077 159 DIGGGTTEVAVISLG 173 (342)
T ss_pred EeCCCceeEEEEEec
Confidence 999999999988765
No 24
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.09 E-value=3e-09 Score=81.80 Aligned_cols=100 Identities=13% Similarity=0.119 Sum_probs=83.2
Q ss_pred eccccCCeecCHHHHHHHHHHhhcc---ccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhh
Q psy2724 69 KYPIEHGIITNWDDMEKIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYA 145 (174)
Q Consensus 69 ~~p~~~g~i~d~~~~~~l~~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~ 145 (174)
..|+.+|.|.|.+..+.+++++... .++ ..-..++++.|...+..+|+.+.+. ++.-|+.-+.+..+|++++.+
T Consensus 28 ~~~~~~g~I~d~~~~~~~l~~l~~~a~~~~g--~~~~~vvisVP~~~~~~~r~a~~~a-~~~aGl~~~~li~ep~Aaa~~ 104 (239)
T TIGR02529 28 ADVVRDGIVVDFLGAVEIVRRLKDTLEQKLG--IELTHAATAIPPGTIEGDPKVIVNV-IESAGIEVLHVLDEPTAAAAV 104 (239)
T ss_pred cccccCCeEEEhHHHHHHHHHHHHHHHHHhC--CCcCcEEEEECCCCCcccHHHHHHH-HHHcCCceEEEeehHHHHHHH
Confidence 3689999999999999999999842 232 2345799999998888888776654 467899999999999999999
Q ss_pred cCCCeEEEEecCCCceEEEeeeCCee
Q psy2724 146 SGRTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
++....+|+|+|++.|.++-+.+|.+
T Consensus 105 ~~~~~~~vvDiGggtt~i~i~~~G~i 130 (239)
T TIGR02529 105 LQIKNGAVVDVGGGTTGISILKKGKV 130 (239)
T ss_pred hcCCCcEEEEeCCCcEEEEEEECCeE
Confidence 88777899999999999988888864
No 25
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=98.95 E-value=5.7e-08 Score=75.88 Aligned_cols=133 Identities=14% Similarity=0.090 Sum_probs=97.9
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHHH
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDME 84 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~ 84 (174)
..-.++||+||+++|+=.+ +..+. .++. ++ ..+.++++|.+.|++...
T Consensus 23 ~~~~~~iDiGSssi~~vv~-~~~~~-----~~~~-----------------~~---------~~~~~vr~G~i~di~~a~ 70 (267)
T PRK15080 23 SPLKVGVDLGTANIVLAVL-DEDGQ-----PVAG-----------------AL---------EWADVVRDGIVVDFIGAV 70 (267)
T ss_pred CCEEEEEEccCceEEEEEE-cCCCC-----EEEE-----------------Ee---------ccccccCCCEEeeHHHHH
Confidence 4567899999999998543 22222 1211 11 134578999999999999
Q ss_pred HHHHHhhcc---ccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCce
Q psy2724 85 KIWHHTFYN---ELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVS 161 (174)
Q Consensus 85 ~l~~~~~~~---~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t 161 (174)
..++++... .++.. -..++++.|......+|+.+. -+.+..|++-..++.++.+++.+.+...++|||+|++.|
T Consensus 71 ~~i~~~~~~ae~~~g~~--i~~v~~~vp~~~~~~~~~~~~-~~~~~aGl~~~~ii~e~~A~a~~~~~~~~~vvDIGggtt 147 (267)
T PRK15080 71 TIVRRLKATLEEKLGRE--LTHAATAIPPGTSEGDPRAII-NVVESAGLEVTHVLDEPTAAAAVLGIDNGAVVDIGGGTT 147 (267)
T ss_pred HHHHHHHHHHHHHhCCC--cCeEEEEeCCCCCchhHHHHH-HHHHHcCCceEEEechHHHHHHHhCCCCcEEEEeCCCcE
Confidence 999888742 23443 345677888877666666655 566888999888999999999888777789999999999
Q ss_pred EEEeeeCCeec
Q psy2724 162 HTVPIYEDHEG 172 (174)
Q Consensus 162 ~v~pV~dG~~~ 172 (174)
.++-+.+|.+.
T Consensus 148 ~i~v~~~g~~~ 158 (267)
T PRK15080 148 GISILKDGKVV 158 (267)
T ss_pred EEEEEECCeEE
Confidence 99888888653
No 26
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=98.65 E-value=3.7e-07 Score=78.88 Aligned_cols=147 Identities=18% Similarity=0.175 Sum_probs=95.1
Q ss_pred eEEEECCCccEEEeeeCCCCCC--------CCCCceeEEeCCCCccccCCCcceeecchhhhc----c------------
Q psy2724 8 ALVVDNGSGMCKAGFAGDDAPR--------AVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----R------------ 63 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~~P~--------~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~------------ 63 (174)
+|-||+||.+..+++..+..|. ..+||+++...+ ...++|.+|... .
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~---------~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG 71 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKD---------GGVEVGKEALAAAAEDPKNTISSVKRLMG 71 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCC---------CCEEecHHHHHhhhhChhhhHHHHHHHhC
Confidence 4789999999999987544333 246777776433 134555554310 0
Q ss_pred -Cc------ceeeccc------------cCCeecCHHHHHHHHHHhhc---cccccCCCCCceEEeeCCCCChHHHHHHH
Q psy2724 64 -GI------LTLKYPI------------EHGIITNWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMT 121 (174)
Q Consensus 64 -~~------~~~~~p~------------~~g~i~d~~~~~~l~~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~ 121 (174)
.. ..+.+.+ ..|.+.-.+....+++++.. +.++. .-..++++.|.+.+..+|+.+.
T Consensus 72 ~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ei~a~iL~~lk~~a~~~lg~--~v~~~VItVPa~f~~~qR~a~~ 149 (599)
T TIGR01991 72 RSIEDIKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEESLGG--DLVGAVITVPAYFDDAQRQATK 149 (599)
T ss_pred CCccchhhcccCCEEEEEcCCCceEEEeCCCEEcHHHHHHHHHHHHHHHHHHHhCC--CcceEEEEECCCCCHHHHHHHH
Confidence 00 0001111 12223333444445555432 23332 2357999999999999998876
Q ss_pred HHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 122 QIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 122 e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
+. .+..|++-+.++++|.||++++| ..+-+|+|+|++.+.|+-+
T Consensus 150 ~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGgGT~DvSi~ 198 (599)
T TIGR01991 150 DA-ARLAGLNVLRLLNEPTAAAVAYGLDKASEGIYAVYDLGGGTFDVSIL 198 (599)
T ss_pred HH-HHHcCCCceEEecCHHHHHHHHhhccCCCCEEEEEEcCCCeEEEEEE
Confidence 65 57899999999999999998876 3568999999999998865
No 27
>PLN03184 chloroplast Hsp70; Provisional
Probab=98.63 E-value=7.1e-07 Score=78.03 Aligned_cols=85 Identities=12% Similarity=0.052 Sum_probs=64.3
Q ss_pred CHHHHHHHHHHhhc---cccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----Ce
Q psy2724 79 NWDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TT 150 (174)
Q Consensus 79 d~~~~~~l~~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~t 150 (174)
-.+....+++++.. ..++. .-..++++.|.+.+..+|+.+.+ ..+..|+.-+.++++|.+|++++|. .+
T Consensus 149 peei~a~iL~~lk~~ae~~lg~--~v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAlayg~~~~~~~~ 225 (673)
T PLN03184 149 AEEISAQVLRKLVDDASKFLND--KVTKAVITVPAYFNDSQRTATKD-AGRIAGLEVLRIINEPTAASLAYGFEKKSNET 225 (673)
T ss_pred HHHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHH-HHHHCCCCeEEEeCcHHHHHHHhhcccCCCCE
Confidence 34445556665542 22332 23579999999999999987765 4577899999999999999988763 57
Q ss_pred EEEEecCCCceEEEee
Q psy2724 151 GIVLDSGDGVSHTVPI 166 (174)
Q Consensus 151 glVVDiG~~~t~v~pV 166 (174)
-+|+|+|++.++|+-+
T Consensus 226 vlV~DlGgGT~DvSi~ 241 (673)
T PLN03184 226 ILVFDLGGGTFDVSVL 241 (673)
T ss_pred EEEEECCCCeEEEEEE
Confidence 8999999999998765
No 28
>PRK13410 molecular chaperone DnaK; Provisional
Probab=98.62 E-value=1e-06 Score=76.94 Aligned_cols=64 Identities=14% Similarity=0.120 Sum_probs=55.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
..+++|.|.+.+..+|+.+.+.+ +..|++-+.++++|.||++++| ..+-+|+|+|++.+.|+-+
T Consensus 136 ~~~VITVPa~f~~~qR~a~~~Aa-~~AGl~v~~li~EPtAAAlayg~~~~~~~~vlV~DlGgGT~Dvsv~ 204 (668)
T PRK13410 136 TGAVITVPAYFNDSQRQATRDAG-RIAGLEVERILNEPTAAALAYGLDRSSSQTVLVFDLGGGTFDVSLL 204 (668)
T ss_pred ceEEEEECCCCCHHHHHHHHHHH-HHcCCCeEEEecchHHHHHHhccccCCCCEEEEEECCCCeEEEEEE
Confidence 46999999999999998776554 7789999999999999999886 3578999999999998765
No 29
>CHL00094 dnaK heat shock protein 70
Probab=98.60 E-value=8.7e-07 Score=76.90 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=63.8
Q ss_pred HHHHHHHHHHhhc---cccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeE
Q psy2724 80 WDDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTG 151 (174)
Q Consensus 80 ~~~~~~l~~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tg 151 (174)
.+....+++++.. ..++. .-..++++.|...+..+|+.+.+. .+..|+.-+.++++|.||++++|. .+-
T Consensus 113 eei~a~iL~~l~~~ae~~lg~--~v~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAlay~~~~~~~~~v 189 (621)
T CHL00094 113 EEISAQVLRKLVEDASKYLGE--TVTQAVITVPAYFNDSQRQATKDA-GKIAGLEVLRIINEPTAASLAYGLDKKNNETI 189 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCC--CCCeEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEeccHHHHHHHhccccCCCCEE
Confidence 4444555655542 12322 234689999999998888877665 477899999999999999998863 578
Q ss_pred EEEecCCCceEEEeee
Q psy2724 152 IVLDSGDGVSHTVPIY 167 (174)
Q Consensus 152 lVVDiG~~~t~v~pV~ 167 (174)
+|+|+|++.+.++-+.
T Consensus 190 lV~DlGgGT~DvSv~~ 205 (621)
T CHL00094 190 LVFDLGGGTFDVSILE 205 (621)
T ss_pred EEEEcCCCeEEEEEEE
Confidence 9999999999998763
No 30
>PRK13411 molecular chaperone DnaK; Provisional
Probab=98.59 E-value=9e-07 Score=77.20 Aligned_cols=64 Identities=14% Similarity=0.119 Sum_probs=54.7
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC------CeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR------TTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~------~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+++..+|+.+.+ ..+..|+.-+.++++|.||++++|. .+-+|+|+|++.+.|+-+
T Consensus 134 ~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EPtAAAl~y~~~~~~~~~~vlV~DlGgGT~dvsi~ 203 (653)
T PRK13411 134 TQAVITVPAYFTDAQRQATKD-AGTIAGLEVLRIINEPTAAALAYGLDKQDQEQLILVFDLGGGTFDVSIL 203 (653)
T ss_pred ceEEEEECCCCCcHHHHHHHH-HHHHcCCCeEEEecchHHHHHHhcccccCCCCEEEEEEcCCCeEEEEEE
Confidence 569999999999999998766 4577899999999999999988763 457999999999998754
No 31
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=98.57 E-value=1.6e-06 Score=75.85 Aligned_cols=65 Identities=14% Similarity=0.093 Sum_probs=56.2
Q ss_pred CCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEEee
Q psy2724 101 EHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV 166 (174)
-..+++|.|.+.+..+|+.+.+ ..+..|++-+.++++|.+|++++|. .+-+|+|+|++.++|+-+
T Consensus 174 v~~~VITVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAlay~~~~~~~~~vlV~DlGgGT~DvSv~ 243 (663)
T PTZ00400 174 VKQAVITVPAYFNDSQRQATKD-AGKIAGLDVLRIINEPTAAALAFGMDKNDGKTIAVYDLGGGTFDISIL 243 (663)
T ss_pred CceEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEeCchHHHHHHhccccCCCcEEEEEeCCCCeEEEEEE
Confidence 3579999999999999987765 4577899999999999999998873 578999999999999865
No 32
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=98.56 E-value=1.7e-06 Score=75.05 Aligned_cols=64 Identities=14% Similarity=0.093 Sum_probs=54.7
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+++..+|+.+.+. .+..|++-+.++++|.||++++| ..+-+|+|+|++.++|+-+
T Consensus 150 ~~~VITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSv~ 218 (616)
T PRK05183 150 DGAVITVPAYFDDAQRQATKDA-ARLAGLNVLRLLNEPTAAAIAYGLDSGQEGVIAVYDLGGGTFDISIL 218 (616)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCeEEEecchHHHHHHhhcccCCCCEEEEEECCCCeEEEEEE
Confidence 5799999999999999877554 67899999999999999998775 3467999999999998765
No 33
>PRK11678 putative chaperone; Provisional
Probab=98.52 E-value=1.6e-06 Score=72.43 Aligned_cols=157 Identities=13% Similarity=0.171 Sum_probs=96.3
Q ss_pred eEEEECCCccEEEeeeCCCCC--------CCCCCceeEEeCCCCc-------------------------------cccC
Q psy2724 8 ALVVDNGSGMCKAGFAGDDAP--------RAVFPSIVGRPRHQGV-------------------------------MVGM 48 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~~P--------~~~~ps~~~~~~~~~~-------------------------------~~~~ 48 (174)
.+-||+||.+.-+++..+..| ...+||++........ ....
T Consensus 2 ~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (450)
T PRK11678 2 FIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDIDV 81 (450)
T ss_pred eEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhcccccccc
Confidence 478999999999999854333 3456787765311000 0011
Q ss_pred CCcceeecchhhhc----cCcceee---------ccccCCeecCHH-HHHHHHHHhhc---cccccCCCCCceEEeeCCC
Q psy2724 49 GQKDSYVGDEAQSK----RGILTLK---------YPIEHGIITNWD-DMEKIWHHTFY---NELRVAPEEHPILLTEAPL 111 (174)
Q Consensus 49 ~~~~~~~g~~~~~~----~~~~~~~---------~p~~~g~i~d~~-~~~~l~~~~~~---~~L~~~~~~~~vll~e~~~ 111 (174)
.+...++|.++.+. .+...+. .++..+.+...+ ....+|.++-. ..++. .-..++++.|..
T Consensus 82 ~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~~~~~~~e~l~a~iL~~lk~~ae~~~g~--~v~~~VItvPa~ 159 (450)
T PRK11678 82 TAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQA--AITQAVIGRPVN 159 (450)
T ss_pred cccccchhHHHHHhhccCCCCceEEecchhhhccCCCCccceeCHHHHHHHHHHHHHHHHHHHhCC--CCCcEEEEECCc
Confidence 23456788887532 1111111 233434333333 23334444421 12322 235689999987
Q ss_pred CC-----hHHHHHH--HHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 112 NP-----KANREKM--TQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 112 ~~-----~~~r~~l--~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
.. ..+|+.. ..-..+..|++.+.++++|.+|++++| ..+-||+|+|.+.+.++-+
T Consensus 160 F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~~~~~~vlV~D~GGGT~D~Svv 226 (450)
T PRK11678 160 FQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATLTEEKRVLVVDIGGGTTDCSML 226 (450)
T ss_pred cccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhccccCCCCeEEEEEeCCCeEEEEEE
Confidence 65 5555432 455668899999999999999999887 3678999999999988766
No 34
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=98.49 E-value=1.1e-06 Score=75.88 Aligned_cols=64 Identities=14% Similarity=0.136 Sum_probs=54.5
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC------CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g------~~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+.+..+|+.+.+ ..+..|++-+.++++|.||++++| ..+-+|+|+|++++.++-+
T Consensus 131 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~vlV~D~Gggt~dvsv~ 200 (595)
T TIGR02350 131 TEAVITVPAYFNDAQRQATKD-AGKIAGLEVLRIINEPTAAALAYGLDKSKKDEKILVFDLGGGTFDVSIL 200 (595)
T ss_pred CeEEEEECCCCCHHHHHHHHH-HHHHcCCceEEEecchHHHHHHHhhcccCCCcEEEEEECCCCeEEEEEE
Confidence 468999999999999988766 457788998999999999998765 3568999999999998765
No 35
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=98.44 E-value=1.3e-06 Score=75.86 Aligned_cols=64 Identities=14% Similarity=0.125 Sum_probs=54.8
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+++..+|+.+.+. .+..|++-+.++++|.||++++| ..+-+|+|+|++.+.++-+
T Consensus 134 ~~~VItVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EptAAAl~y~~~~~~~~~vlV~D~GggT~dvsv~ 202 (627)
T PRK00290 134 TEAVITVPAYFNDAQRQATKDA-GKIAGLEVLRIINEPTAAALAYGLDKKGDEKILVYDLGGGTFDVSIL 202 (627)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCceEEEecchHHHHHHhhhccCCCCEEEEEECCCCeEEEEEE
Confidence 4689999999999999887654 47789999999999999998876 3679999999999998765
No 36
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=98.40 E-value=3.8e-06 Score=73.37 Aligned_cols=64 Identities=11% Similarity=0.128 Sum_probs=54.7
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-------CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-------~~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+.+..+|+.+.+ ..+..|++-+.++++|.+|++++| ..+-+|+|+|++.+.|+-+
T Consensus 141 ~~~VItVPa~f~~~qR~a~~~-Aa~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~ 211 (653)
T PTZ00009 141 KDAVVTVPAYFNDSQRQATKD-AGTIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLL 211 (653)
T ss_pred ceeEEEeCCCCCHHHHHHHHH-HHHHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEE
Confidence 579999999999998887665 557789999999999999998775 3578999999999998765
No 37
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=98.39 E-value=1.2e-05 Score=69.28 Aligned_cols=149 Identities=17% Similarity=0.165 Sum_probs=95.8
Q ss_pred CceEEEECCCccEEEeeeCCC-CCCC--------CCCceeEEeCCCCccccCCCcceeecchhhhc----cCc--ceeec
Q psy2724 6 VAALVVDNGSGMCKAGFAGDD-APRA--------VFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSK----RGI--LTLKY 70 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~-~P~~--------~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~----~~~--~~~~~ 70 (174)
..+|-||+|+.++-+.+.... .|++ ..||+++...+ ...++|..+... +.. ..+.+
T Consensus 5 ~~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~---------~~~~vG~~A~~q~~~~p~~t~~~~kr 75 (579)
T COG0443 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKN---------GEVLVGQAAKRQAVDNPENTIFSIKR 75 (579)
T ss_pred ceEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCC---------CCEEecHHHHHHhhhCCcceEEEEeh
Confidence 468999999999999988755 4442 23444443322 246788776531 111 12222
Q ss_pred cccC------------CeecCH-HHHHHHHHHhhc---cccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeee
Q psy2724 71 PIEH------------GIITNW-DDMEKIWHHTFY---NELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMY 134 (174)
Q Consensus 71 p~~~------------g~i~d~-~~~~~l~~~~~~---~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~ 134 (174)
-+-+ |..... +....++.++-. ..|+ ..-..++++.|.+....+|+.+.+ ..+..|++-+.
T Consensus 76 ~~G~~~~~~~~~~~~~~~~~~~eeisa~~L~~lk~~ae~~lg--~~v~~~VItVPayF~d~qR~at~~-A~~iaGl~vlr 152 (579)
T COG0443 76 KIGRGSNGLKISVEVDGKKYTPEEISAMILTKLKEDAEAYLG--EKVTDAVITVPAYFNDAQRQATKD-AARIAGLNVLR 152 (579)
T ss_pred hcCCCCCCCcceeeeCCeeeCHHHHHHHHHHHHHHHHHHhhC--CCcceEEEEeCCCCCHHHHHHHHH-HHHHcCCCeEE
Confidence 2211 111222 222233433221 1222 234679999999999998876554 45779999999
Q ss_pred eehhhhHHhhhcC-----CCeEEEEecCCCceEEEee
Q psy2724 135 VAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 135 ~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV 166 (174)
++++|.+|+|++| ..+-+|+|+|++.+.++=|
T Consensus 153 linEPtAAAlayg~~~~~~~~vlV~DlGGGTfDvSll 189 (579)
T COG0443 153 LINEPTAAALAYGLDKGKEKTVLVYDLGGGTFDVSLL 189 (579)
T ss_pred EecchHHHHHHhHhccCCCcEEEEEEcCCCCEEEEEE
Confidence 9999999999998 3688999999999998755
No 38
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=98.34 E-value=1.7e-05 Score=69.20 Aligned_cols=65 Identities=15% Similarity=0.070 Sum_probs=55.2
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEEeee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIY 167 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~ 167 (174)
..+++|.|.+....+|+.+.+ ..+..|+.-+.++++|.||++++|. .+-+|+|+|++.+.|+-+-
T Consensus 161 ~~aVITVPayF~~~qR~at~~-Aa~~AGl~v~rlInEPtAAAlayg~~~~~~~~vlV~DlGGGT~DvSil~ 230 (657)
T PTZ00186 161 SNAVVTCPAYFNDAQRQATKD-AGTIAGLNVIRVVNEPTAAALAYGMDKTKDSLIAVYDLGGGTFDISVLE 230 (657)
T ss_pred ceEEEEECCCCChHHHHHHHH-HHHHcCCCeEEEEcChHHHHHHHhccCCCCCEEEEEECCCCeEEEEEEE
Confidence 468999999999998887665 4477899989999999999988873 5789999999999988653
No 39
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=98.33 E-value=1.1e-05 Score=69.73 Aligned_cols=64 Identities=16% Similarity=0.139 Sum_probs=54.9
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV 166 (174)
..++++.|.+.+..+|+.+.+. .+.-|++-+.++++|.||++++|. .+-+|+|+|++.+.|+-+
T Consensus 142 ~~aVITVPa~f~~~qR~a~~~A-a~~AGl~v~~li~EPtAAAlay~~~~~~~~~vlV~DlGGGT~DvSi~ 210 (595)
T PRK01433 142 TKAVITVPAHFNDAARGEVMLA-AKIAGFEVLRLIAEPTAAAYAYGLNKNQKGCYLVYDLGGGTFDVSIL 210 (595)
T ss_pred ceEEEEECCCCCHHHHHHHHHH-HHHcCCCEEEEecCcHHHHHHHhcccCCCCEEEEEECCCCcEEEEEE
Confidence 5799999999999988877655 577899999999999999998873 457999999999998765
No 40
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=98.12 E-value=1.7e-05 Score=68.37 Aligned_cols=64 Identities=16% Similarity=0.204 Sum_probs=50.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC------CCeEEEEecCCCceEEEee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g------~~tglVVDiG~~~t~v~pV 166 (174)
..++++.|..++..+|+.+.+.+ +..|++-+.++++|.||+++++ ..+-||+|+|++.+.++-+
T Consensus 136 ~~~vitVPa~~~~~qr~~~~~Aa-~~agl~~~~li~Ep~Aaa~~y~~~~~~~~~~vlv~D~Gggt~dvs~~ 205 (602)
T PF00012_consen 136 TDVVITVPAYFTDEQRQALRDAA-ELAGLNVLRLINEPTAAALAYGLERSDKGKTVLVVDFGGGTFDVSVV 205 (602)
T ss_dssp EEEEEEE-TT--HHHHHHHHHHH-HHTT-EEEEEEEHHHHHHHHTTTTSSSSEEEEEEEEEESSEEEEEEE
T ss_pred ccceeeechhhhhhhhhcccccc-cccccccceeecccccccccccccccccccceeccccccceEeeeeh
Confidence 46899999999999988776554 6788888899999999988765 3588999999999988765
No 41
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.06 E-value=3.1e-05 Score=62.08 Aligned_cols=158 Identities=12% Similarity=0.051 Sum_probs=91.4
Q ss_pred EECCCccEEEeeeCC-CCC-CCCCCceeEEeCCCCc-cc-----------cCCCcceeecchhhhccCcceeeccccCCe
Q psy2724 11 VDNGSGMCKAGFAGD-DAP-RAVFPSIVGRPRHQGV-MV-----------GMGQKDSYVGDEAQSKRGILTLKYPIEHGI 76 (174)
Q Consensus 11 iD~Gs~~~k~G~~g~-~~P-~~~~ps~~~~~~~~~~-~~-----------~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~ 76 (174)
||+|-+++|+=+.+. ..+ +..+||.++....... .. ..+.+.+++|+.+....+. ...+-+.+..
T Consensus 2 iDvGyg~~K~~~~~~~~~~~~~~fPS~~~~~~~~~~~~~~~~~~~~~~~v~~~g~~y~VG~~a~~~~~~-~~~~~~~~~~ 80 (320)
T TIGR03739 2 VDVGYGNTKFVSQVRGTDIRCASFPSVAPPSSRESPAWPGGSEARKTVCVPVGGLFYEVGPDVSLAADT-NRARQLHDEY 80 (320)
T ss_pred ccccCCceEEEecCCCCceeeEEcccccccccccccccccccCCCceEEEEECCEEEEeccchhhcccC-ccceeccccc
Confidence 799999999866422 222 3467887754322210 00 1233566788776321110 1111122222
Q ss_pred ecCHHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhh--------cCCCeeeeehhhhHHhhhc--
Q psy2724 77 ITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET--------FNTPAMYVAIQAVLSLYAS-- 146 (174)
Q Consensus 77 i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~--------~~~~sv~~~~~~~la~~~~-- 146 (174)
..+ +....++.+++. ..+.+ ....+++--|...-..+|+.+.+.+-.. ..+..+.+.+|++.|.+..
T Consensus 81 ~~~-~~~~~L~~~Al~-~~~~~-~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~ 157 (320)
T TIGR03739 81 TET-PEYMALLRGALA-LSKVR-EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVA 157 (320)
T ss_pred cCC-HHHHHHHHHHHH-HhcCC-CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHh
Confidence 222 345667767763 22321 1123555556555566777787776432 4677889999999887653
Q ss_pred -------CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 147 -------GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 147 -------g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
...+.+|||+|+.+|.++.+-++.+.
T Consensus 158 ~~~~~~~~~~~~lVIDIG~~TtD~~~~~~~~~~ 190 (320)
T TIGR03739 158 QHGKLLTGKEQSLIIDPGYFTFDWLVARGMRLV 190 (320)
T ss_pred cCCCcccCcCcEEEEecCCCeeeeehccCCEEc
Confidence 34567999999999999877666553
No 42
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=97.57 E-value=0.00092 Score=54.17 Aligned_cols=162 Identities=15% Similarity=0.202 Sum_probs=85.3
Q ss_pred CceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCC-cccc------------CCCcc---eeecchhhhccCcceee
Q psy2724 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQG-VMVG------------MGQKD---SYVGDEAQSKRGILTLK 69 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~-~~~~------------~~~~~---~~~g~~~~~~~~~~~~~ 69 (174)
+.++-||+|-.++|.-+... ...+|+.++...... ...+ .+... +++|.++........-.
T Consensus 2 ~~v~~iDiG~g~tK~~~~~~---~~~~ps~~~~~~~~~~~~~~~~~~~~~~~~v~v~g~~~~~y~~G~~~~~~~~~~~~~ 78 (344)
T PRK13917 2 VYVMALDFGNGFVKGKINDE---KFVIPSRYGRKTNENNQLSGFVDNKLDVSEFIINGNEDEVLLFGNDLDKTTNTGKDT 78 (344)
T ss_pred ceEEEEeccCCeEEEEecCC---CEEcceeccCCCCccccccccCCCCCcceEEEecCcccccEEEcchhhhcccccCCc
Confidence 46788999999999955421 124566655432111 0101 11123 67777753211100000
Q ss_pred ccccCCeecCHHHHHHHHHHhhcccccc--CCCCCceEE--eeCCCC-ChHHHHHHHHHhhhh-----------cCCCee
Q psy2724 70 YPIEHGIITNWDDMEKIWHHTFYNELRV--APEEHPILL--TEAPLN-PKANREKMTQIMFET-----------FNTPAM 133 (174)
Q Consensus 70 ~p~~~g~i~d~~~~~~l~~~~~~~~L~~--~~~~~~vll--~e~~~~-~~~~r~~l~e~lFE~-----------~~~~sv 133 (174)
+-.+... .-+..+.++..++...+.. ..+...++| --|... ....++++.+.+-.. ..+..+
T Consensus 79 ~~~~~~y--~~~~y~~L~~~Al~~~~~~~~~~~~~~v~l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V 156 (344)
T PRK13917 79 YSTNDRY--DIKQFKTLVKCALAGLAARTVPEEVVEVVVATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGV 156 (344)
T ss_pred ccccccc--cchhHHHHHHHHHHHhhhhhcCCCcceeEEEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEE
Confidence 1112222 1235666766665322211 112233333 344433 222235555544222 446678
Q ss_pred eeehhhhHHhhhcCC-------------CeEEEEecCCCceEEEeeeCCeec
Q psy2724 134 YVAIQAVLSLYASGR-------------TTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 134 ~~~~~~~la~~~~g~-------------~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
.+.+|++.++|.... ...+|||+|+.+|.++-+.+|.+.
T Consensus 157 ~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~~TtD~~v~~~~~~~ 208 (344)
T PRK13917 157 KVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGSGTTDLDTIQNLKRV 208 (344)
T ss_pred EEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCCCcEEEEEEeCcEEc
Confidence 899999999875421 346999999999999988777654
No 43
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=97.38 E-value=0.0048 Score=50.40 Aligned_cols=58 Identities=10% Similarity=0.060 Sum_probs=45.4
Q ss_pred ChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEeeeCCee
Q psy2724 113 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 113 ~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
++...+.+.+ +++..|..-..+..+|+++++++. ....+|||+|++.|+++.+.+|.+
T Consensus 156 ~~~~v~~~~~-~~~~aGl~~~~i~~~~~A~a~a~~~~~~~~~~~~vvDiG~gtt~i~i~~~g~~ 218 (371)
T TIGR01174 156 SSTILRNLVK-CVERCGLEVDNIVLSGLASAIAVLTEDEKELGVCLIDIGGGTTDIAVYTGGSI 218 (371)
T ss_pred EHHHHHHHHH-HHHHcCCCeeeEEEhhhhhhhhhcCcchhcCCEEEEEeCCCcEEEEEEECCEE
Confidence 4444444444 557889998889999999998764 235799999999999999999875
No 44
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=97.28 E-value=0.0085 Score=50.14 Aligned_cols=150 Identities=13% Similarity=0.162 Sum_probs=82.2
Q ss_pred CCCCceEEEECCCccEEEeeeC----CCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeec
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAG----DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 78 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~ 78 (174)
.++...|-||+||.+++.=|+- +..+....|.+--.. +++++- + --..-|+......
T Consensus 3 ~~~i~SVGIDIGTsTTqlvfSrl~l~n~a~~~~vpr~~I~d-----------kev~yr-------S-~i~fTPl~~~~~I 63 (475)
T PRK10719 3 TEELLSVGIDIGTTTTQVIFSRLELENRASVFQVPRIEIID-----------KEIIYR-------S-PIYFTPLLKQGEI 63 (475)
T ss_pred ccEEEEEEEeccCceEEEEEEEEEEecccccccCceEEEee-----------eEEEEe-------c-CceecCCCCCccc
Confidence 4778899999999999997774 112222222221111 122211 1 1234577777777
Q ss_pred CHHHHHHHHHHhhccccccCCC--CCceEEeeCCCCChHHHHHHHHHh---hhhcCCCeeeeehhhhHHhhhcC------
Q psy2724 79 NWDDMEKIWHHTFYNELRVAPE--EHPILLTEAPLNPKANREKMTQIM---FETFNTPAMYVAIQAVLSLYASG------ 147 (174)
Q Consensus 79 d~~~~~~l~~~~~~~~L~~~~~--~~~vll~e~~~~~~~~r~~l~e~l---FE~~~~~sv~~~~~~~la~~~~g------ 147 (174)
|-++++++.+.-| ++-++.++ +..+.++.-.......-++..+-+ -.+|=+...-.--+.+++.+|+|
T Consensus 64 D~~~i~~~V~~ey-~~Agi~~~die~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva~~ASg~avLse 142 (475)
T PRK10719 64 DEAAIKELIEEEY-QKAGIAPESIDSGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIAGKGAGAQTLSE 142 (475)
T ss_pred cHHHHHHHHHHHH-HHcCCCHHHccccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhhHHHhhHHHhhh
Confidence 9999999999888 56667664 333333333333322223333321 01111111111122223333333
Q ss_pred --CCeEEEEecCCCceEEEeeeCCeec
Q psy2724 148 --RTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 148 --~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
....++||+|++.|+++-+.+|.+.
T Consensus 143 Eke~gVa~IDIGgGTT~iaVf~~G~l~ 169 (475)
T PRK10719 143 ERNTRVLNIDIGGGTANYALFDAGKVI 169 (475)
T ss_pred hccCceEEEEeCCCceEEEEEECCEEE
Confidence 4678999999999999999999753
No 45
>KOG0104|consensus
Probab=96.89 E-value=0.013 Score=51.42 Aligned_cols=65 Identities=15% Similarity=0.206 Sum_probs=54.4
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC----------CCeEEEEecCCCceEEEeee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG----------RTTGIVLDSGDGVSHTVPIY 167 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g----------~~tglVVDiG~~~t~v~pV~ 167 (174)
..+++|.|++..+.+|+.+.+.. +-.|..-+.+++...+++..+| .+.-++-|+|.+.|.++-|.
T Consensus 159 kd~ViTVP~~F~qaeR~all~Aa-~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativs 233 (902)
T KOG0104|consen 159 KDMVITVPPFFNQAERRALLQAA-QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVS 233 (902)
T ss_pred hheEEeCCcccCHHHHHHHHHHH-HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEE
Confidence 56899999999999999887754 5567777899999999987776 46789999999999988664
No 46
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=96.70 E-value=0.0062 Score=48.82 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=48.2
Q ss_pred HHHHhhccccccCCCCCceEEeeCC---CCC--hHHHHHHH----HHhh-------hhcCCCeeeeehhhhHHhhhc---
Q psy2724 86 IWHHTFYNELRVAPEEHPILLTEAP---LNP--KANREKMT----QIMF-------ETFNTPAMYVAIQAVLSLYAS--- 146 (174)
Q Consensus 86 l~~~~~~~~L~~~~~~~~vll~e~~---~~~--~~~r~~l~----e~lF-------E~~~~~sv~~~~~~~la~~~~--- 146 (174)
+..|++ .+-++.+++-.++++-|. ... +..++.+. .+.. +.+.+..+.+.||++.|.|..
T Consensus 81 av~haL-~~~G~~~~~V~lvvGLPl~~y~~~~~~~~~~~i~rk~~n~~~~v~~~g~~~i~I~~V~V~PQ~~~A~~~~~~~ 159 (318)
T PF06406_consen 81 AVHHAL-LKAGLEPQDVDLVVGLPLSEYYDQDKQKNEENIERKKENLMRPVELNGGYTITIKDVEVFPQSVGAVFDALMD 159 (318)
T ss_dssp HHHHHH-HHHS--SSEEEEEEEE-HHHHB-TTSSB-HHHHHHHHHHTTS-EEETTB---EEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHH-HHcCCCCCCeEEEecCCHHHHHhhhhhhHHHHHHhhhcccccceeecCceeEEEeeEEEEcccHHHHHHHHHh
Confidence 445666 345667777778888773 121 11122222 1221 134467888999999998864
Q ss_pred --CCCeEEEEecCCCceEEEeeeCC
Q psy2724 147 --GRTTGIVLDSGDGVSHTVPIYED 169 (174)
Q Consensus 147 --g~~tglVVDiG~~~t~v~pV~dG 169 (174)
...+-+|||+|+..|.+.-|..+
T Consensus 160 ~~~~~~~lVVDIGG~T~Dv~~v~~~ 184 (318)
T PF06406_consen 160 LDEDESVLVVDIGGRTTDVAVVRGG 184 (318)
T ss_dssp S-TTSEEEEEEE-SS-EEEEEEEGG
T ss_pred hcccCcEEEEEcCCCeEEeeeecCC
Confidence 24678999999999999877654
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=96.27 E-value=0.28 Score=39.54 Aligned_cols=59 Identities=10% Similarity=0.022 Sum_probs=39.5
Q ss_pred ChHHHHHHHHHhhhhcCCCeeeeehhhhHH--hhh-----c---C-CC-eEEEEecCCCceEEEeeeCCeec
Q psy2724 113 PKANREKMTQIMFETFNTPAMYVAIQAVLS--LYA-----S---G-RT-TGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 113 ~~~~r~~l~e~lFE~~~~~sv~~~~~~~la--~~~-----~---g-~~-tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
++...+.+.++ |+..|+.-..+..++++. ++. . . .. +.++||+|++.|+++-+.+|.+.
T Consensus 141 ~~~~v~~~~~~-~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~~~~~~~~~lvdiG~~~t~l~i~~~g~~~ 211 (348)
T TIGR01175 141 RKEVVDSRLHA-LKLAGLEPKVVDVESFALLRAWRLLGEQLASRTYRLTDAALVDIGATSSTLNLLHPGRML 211 (348)
T ss_pred cHHHHHHHHHH-HHHcCCceEEEecHHHHHHHHHHHHHhhCccccccCceEEEEEECCCcEEEEEEECCeEE
Confidence 56666666665 576776644455555443 442 1 1 22 48999999999999999999753
No 48
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=96.16 E-value=0.18 Score=42.42 Aligned_cols=147 Identities=14% Similarity=0.200 Sum_probs=89.3
Q ss_pred CCceEEEECCCccEEEeeeC----CCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCH
Q psy2724 5 DVAALVVDNGSGMCKAGFAG----DDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNW 80 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g----~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~ 80 (174)
+...|-||+||.+++.=|+. +..+....|.+.-.. +++.+ ++. -.+-|+......|-
T Consensus 2 ~i~SVGIDIGTSTTQlvfSrl~l~n~a~~~~vPri~I~d-----------keViY-------rS~-I~fTPl~~~~~ID~ 62 (473)
T PF06277_consen 2 EILSVGIDIGTSTTQLVFSRLTLENRASGFSVPRIEIVD-----------KEVIY-------RSP-IYFTPLLSQTEIDA 62 (473)
T ss_pred eeEEEEEeecCCceeEEEEEeEEEeccCCCccceEEEec-----------cEEEe-------cCC-ccccCCCCCCccCH
Confidence 45678999999999997774 122222233221111 11111 111 13458887777799
Q ss_pred HHHHHHHHHhhccccccCCCC---CceEEeeCCCCChHHHHHHHHHhhhhcC---CCeeeeehhhhHHhhhcC-------
Q psy2724 81 DDMEKIWHHTFYNELRVAPEE---HPILLTEAPLNPKANREKMTQIMFETFN---TPAMYVAIQAVLSLYASG------- 147 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~---~~vll~e~~~~~~~~r~~l~e~lFE~~~---~~sv~~~~~~~la~~~~g------- 147 (174)
++++++.+.-| ++-++.|++ -.|++|--..- ++.-+.+.+.|-+..| +..-----++++|..++|
T Consensus 63 ~al~~iv~~eY-~~Agi~p~~I~TGAVIITGETAr-KeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~ 140 (473)
T PF06277_consen 63 EALKEIVEEEY-RKAGITPEDIDTGAVIITGETAR-KENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKE 140 (473)
T ss_pred HHHHHHHHHHH-HHcCCCHHHCccccEEEecchhh-hhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhh
Confidence 99999999888 666777653 45676643332 2223334444444333 211112246677777777
Q ss_pred -CCeEEEEecCCCceEEEeeeCCeec
Q psy2724 148 -RTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 148 -~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
..+-+=+|||.+.|.++-+-+|.+.
T Consensus 141 ~~~~V~NiDIGGGTtN~avf~~G~v~ 166 (473)
T PF06277_consen 141 HHTVVANIDIGGGTTNIAVFDNGEVI 166 (473)
T ss_pred hCCeEEEEEeCCCceeEEEEECCEEE
Confidence 3566678999999999999999875
No 49
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=95.80 E-value=0.01 Score=44.44 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=64.9
Q ss_pred ccccCCeecCHHHHHHHHHHhh---ccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhc
Q psy2724 70 YPIEHGIITNWDDMEKIWHHTF---YNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYAS 146 (174)
Q Consensus 70 ~p~~~g~i~d~~~~~~l~~~~~---~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~ 146 (174)
.-+++|.+.|+-..-++.+... .++|++.-.... -..|+-...-..+ +.-=..|.-+...++.+.+|.++++-.
T Consensus 61 dvVRDGiVvdf~eaveiVrrlkd~lEk~lGi~~tha~--taiPPGt~~~~~r-i~iNViESAGlevl~vlDEPTAaa~vL 137 (277)
T COG4820 61 DVVRDGIVVDFFEAVEIVRRLKDTLEKQLGIRFTHAA--TAIPPGTEQGDPR-ISINVIESAGLEVLHVLDEPTAAADVL 137 (277)
T ss_pred hhhccceEEehhhHHHHHHHHHHHHHHhhCeEeeecc--ccCCCCccCCCce-EEEEeecccCceeeeecCCchhHHHHh
Confidence 4467888888744333433332 355665421100 0112211111111 111245888999999999999999999
Q ss_pred CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 147 GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 147 g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
+.++|.|||+|.+.|-|.-+-+|.++
T Consensus 138 ~l~dg~VVDiGGGTTGIsi~kkGkVi 163 (277)
T COG4820 138 QLDDGGVVDIGGGTTGISIVKKGKVI 163 (277)
T ss_pred ccCCCcEEEeCCCcceeEEEEcCcEE
Confidence 99999999999999999999999875
No 50
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.69 E-value=0.17 Score=43.14 Aligned_cols=70 Identities=20% Similarity=0.211 Sum_probs=42.5
Q ss_pred CCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee---hhhhHHhhhc-----CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 101 EHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA---IQAVLSLYAS-----GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~---~~~~la~~~~-----g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
+..++-| ...-..+.++.+.+-+.+..|++ +-++ .++-++..|. ...+++|+|+|.++|.++-+-+|.+.
T Consensus 78 ~i~~vAT-sAvReA~N~~~fl~~i~~~tGl~-ievIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 155 (496)
T PRK11031 78 QIRVVAT-ATLRLAVNADEFLAKAQEILGCP-VQVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGTGAQAT 155 (496)
T ss_pred eEEEEEe-HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEecCCcee
Confidence 3334433 33334455666777777777776 2333 3333333322 12358999999999999988777654
No 51
>KOG0103|consensus
Probab=95.29 E-value=0.24 Score=43.32 Aligned_cols=66 Identities=8% Similarity=0.061 Sum_probs=54.6
Q ss_pred CCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC------------CCeEEEEecCCCceEEEee
Q psy2724 100 EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------------RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 100 ~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g------------~~tglVVDiG~~~t~v~pV 166 (174)
.-.++++..|.+.+..+|..++... ...|+.-+.++.+-.+.+.++| ..+-+.||+||+.++++-.
T Consensus 136 ~v~DcvIavP~~FTd~qRravldAA-~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~ 213 (727)
T KOG0103|consen 136 PVSDCVIAVPSYFTDSQRRAVLDAA-RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIA 213 (727)
T ss_pred CCCCeeEeccccccHHHHHHHHhHH-hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeee
Confidence 4567999999999999999888765 5678888889988888888877 2568999999999988643
No 52
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=95.09 E-value=0.29 Score=38.91 Aligned_cols=70 Identities=21% Similarity=0.210 Sum_probs=42.3
Q ss_pred CCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee---hhhhHHhhhc----CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 101 EHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA---IQAVLSLYAS----GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 101 ~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~---~~~~la~~~~----g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
+..++.|.. +-....++.+.+.+.+..|++ +-++ .++.+...+. ...+++++|+|.++|.++-+-+|.+.
T Consensus 72 ~i~~vaTsa-~R~A~N~~~~~~~i~~~tgi~-i~visg~eEa~l~~~gv~~~~~~~~~~v~DiGGGSte~~~~~~~~~~ 148 (300)
T TIGR03706 72 EVRAVATAA-LRDAKNGPEFLREAEAILGLP-IEVISGEEEARLIYLGVAHTLPIADGLVVDIGGGSTELILGKDFEPG 148 (300)
T ss_pred eEEEEEcHH-HHcCCCHHHHHHHHHHHHCCC-eEEeChHHHHHHHHHHHHhCCCCCCcEEEEecCCeEEEEEecCCCEe
Confidence 444444443 333455667777777777765 3343 3333333221 23457999999999999987777553
No 53
>KOG0101|consensus
Probab=95.08 E-value=0.65 Score=40.48 Aligned_cols=65 Identities=11% Similarity=0.113 Sum_probs=52.4
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC-------CCeEEEEecCCCceEEEeee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG-------RTTGIVLDSGDGVSHTVPIY 167 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g-------~~tglVVDiG~~~t~v~pV~ 167 (174)
..+++|.|......+|+.+-+- -+..|++.+.++++|.++++++| ..+-+|.|.|.....+.++.
T Consensus 144 ~~aviTVPa~F~~~Qr~at~~A-~~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~ 215 (620)
T KOG0101|consen 144 KKAVVTVPAYFNDSQRAATKDA-ALIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLS 215 (620)
T ss_pred eeEEEEecCCcCHHHHHHHHHH-HHhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEE
Confidence 5689999999998888765443 35577788999999999998876 35669999999999888773
No 54
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=94.84 E-value=0.19 Score=39.15 Aligned_cols=24 Identities=21% Similarity=0.504 Sum_probs=21.9
Q ss_pred CCeEEEEecCCCceEEEeeeCCee
Q psy2724 148 RTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 148 ~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
..+++.||+|...|.|+||.+|.+
T Consensus 129 ~dsci~VD~GSTTtDIIPi~~ge~ 152 (330)
T COG1548 129 KDSCILVDMGSTTTDIIPIKDGEA 152 (330)
T ss_pred CCceEEEecCCcccceEeecchhh
Confidence 578999999999999999999963
No 55
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=94.80 E-value=0.12 Score=43.16 Aligned_cols=58 Identities=14% Similarity=0.063 Sum_probs=46.7
Q ss_pred ChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEEeeeCCee
Q psy2724 113 PKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 113 ~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
+....+.+.+ +++..|..-..++.+|++++++... ...+|||+|++.|+++-+.+|.+
T Consensus 164 ~~~~~~~~~~-a~~~aGl~v~~iv~ep~Aaa~a~l~~~e~~~gv~vvDiGggtTdisv~~~G~l 226 (420)
T PRK09472 164 HNDMAKNIVK-AVERCGLKVDQLIFAGLASSYAVLTEDERELGVCVVDIGGGTMDIAVYTGGAL 226 (420)
T ss_pred chHHHHHHHH-HHHHcCCeEeeEEehhhHHHHHhcChhhhhcCeEEEEeCCCceEEEEEECCEE
Confidence 3444455555 6688899988899999999998753 45899999999999999999975
No 56
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=94.76 E-value=0.51 Score=37.95 Aligned_cols=29 Identities=17% Similarity=0.318 Sum_probs=25.2
Q ss_pred hhcCCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 144 YASGRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 144 ~~~g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
++....+++.+|+|..+|.|+||.+|.+.
T Consensus 123 la~~~~~~I~~DmGGTTtDi~~i~~G~p~ 151 (318)
T TIGR03123 123 IAKRIPECLFVDMGSTTTDIIPIIDGEVA 151 (318)
T ss_pred HHhcCCCEEEEEcCccceeeEEecCCEee
Confidence 33457899999999999999999999874
No 57
>PRK10854 exopolyphosphatase; Provisional
Probab=94.52 E-value=0.42 Score=40.94 Aligned_cols=68 Identities=18% Similarity=0.126 Sum_probs=41.6
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee---hhhhHHhhhcC-----CCeEEEEecCCCceEEEeeeCCee
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA---IQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~---~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
..++-| ...-..+.++.+.+-+.+..|++ +-++ .++-++..|.- ..+++|||+|.++|.++-+-+|.+
T Consensus 84 v~~vAT-sAlReA~N~~~fl~~i~~~tGl~-i~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~~~~ 159 (513)
T PRK10854 84 VCIVGT-HTLRQALNATDFLKRAEKVIPYP-IEIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGENFEP 159 (513)
T ss_pred EEEEeh-HHHHcCcCHHHHHHHHHHHHCCC-eEEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecCCCe
Confidence 334433 33334445666777777777776 3333 33333333221 245899999999999998877753
No 58
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=94.29 E-value=0.28 Score=39.65 Aligned_cols=89 Identities=18% Similarity=0.202 Sum_probs=45.7
Q ss_pred CHHHHHHHHHHhhccccccCCCC-----------------CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeee--ehhh
Q psy2724 79 NWDDMEKIWHHTFYNELRVAPEE-----------------HPILLTEAPLNPKANREKMTQIMFETFNTPAMYV--AIQA 139 (174)
Q Consensus 79 d~~~~~~l~~~~~~~~L~~~~~~-----------------~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~--~~~~ 139 (174)
+.+.++..+++=..+.+..+.++ ..++++- .+++.-+...+ +|+..|..-..+ ..-+
T Consensus 86 ~~~el~~~I~~Ea~~~iP~~~~e~~~D~~vl~~~~~~~~~~~Vll~A---a~k~~v~~~~~-~~~~aGL~~~~vDv~~~A 161 (340)
T PF11104_consen 86 PEKELEEAIRWEAEQYIPFPLEEVVFDYQVLGESEDGEEKMEVLLVA---APKEIVESYVE-LFEEAGLKPVAVDVEAFA 161 (340)
T ss_dssp -HHHHHHHHHHHHGGG-SS----EEEEEEESS-GS-TTSEEEEEEEE---EEHHHHHHHHH-HHHHTT-EEEEEEEHHHH
T ss_pred CHHHHHHHHHHHHHhhCCCChhHeEEEEEEeccCCCCCCceEEEEEE---EcHHHHHHHHH-HHHHcCCceEEEeehHHH
Confidence 44566777766665555543332 2333332 23444444443 457777664333 3344
Q ss_pred hHHhhhc---------CCCeEEEEecCCCceEEEeeeCCee
Q psy2724 140 VLSLYAS---------GRTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 140 ~la~~~~---------g~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
++-+|.. ...+-++||+|++.|+++-+.+|.+
T Consensus 162 l~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~~g~~ 202 (340)
T PF11104_consen 162 LARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQNGKP 202 (340)
T ss_dssp GGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEETTEE
T ss_pred HHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEECCEE
Confidence 4444433 1245699999999999998888875
No 59
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=94.08 E-value=0.2 Score=42.70 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=33.3
Q ss_pred HHHHHHHhhhhcCCCe-e-eeehhhhHHhhhc----C-CCeEEEEecCCCceEEEeeeCC
Q psy2724 117 REKMTQIMFETFNTPA-M-YVAIQAVLSLYAS----G-RTTGIVLDSGDGVSHTVPIYED 169 (174)
Q Consensus 117 r~~l~e~lFE~~~~~s-v-~~~~~~~la~~~~----g-~~tglVVDiG~~~t~v~pV~dG 169 (174)
.+.+.+.+-+.+|.+- + .=-.++-++.+|. + ...++|+|+|.++|.++=+-+.
T Consensus 90 ~~eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~~ 149 (492)
T COG0248 90 GDEFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDNF 149 (492)
T ss_pred HHHHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecCC
Confidence 3445555556667762 2 1224455554433 3 7789999999999999855443
No 60
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=93.55 E-value=0.1 Score=41.32 Aligned_cols=32 Identities=19% Similarity=0.211 Sum_probs=23.9
Q ss_pred HHhh-hcCCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 141 LSLY-ASGRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 141 la~~-~~g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
.+++ ..|..++++||+|..+|.|.+|.||.+.
T Consensus 68 ga~~~~~g~~~~i~vDmGGTTtDi~~i~~G~p~ 100 (290)
T PF01968_consen 68 GAAARLTGLENAIVVDMGGTTTDIALIKDGRPE 100 (290)
T ss_dssp HHHH--HT-SSEEEEEE-SS-EEEEEEETTEE-
T ss_pred hhhhhcCCCCCEEEEeCCCCEEEEEEEECCeee
Confidence 3445 5688999999999999999999999985
No 61
>PRK13321 pantothenate kinase; Reviewed
Probab=92.92 E-value=1.2 Score=34.59 Aligned_cols=18 Identities=33% Similarity=0.479 Sum_probs=15.8
Q ss_pred EEEECCCccEEEeeeCCC
Q psy2724 9 LVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~ 26 (174)
+.||+|..++|+|+..++
T Consensus 3 L~IDIGnT~ik~gl~~~~ 20 (256)
T PRK13321 3 LLIDVGNTNIKLGVFDGD 20 (256)
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998643
No 62
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=92.67 E-value=4.3 Score=32.84 Aligned_cols=22 Identities=23% Similarity=0.128 Sum_probs=19.5
Q ss_pred EEEEecCCCceEEEeeeCCeec
Q psy2724 151 GIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 151 glVVDiG~~~t~v~pV~dG~~~ 172 (174)
.+|+|||+..|.++-+++|.+.
T Consensus 195 vav~~Igat~s~l~vi~~gk~l 216 (354)
T COG4972 195 VAVFDIGATSSELLVIQDGKIL 216 (354)
T ss_pred heeeeecccceEEEEEECCeee
Confidence 4599999999999999999864
No 63
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=90.64 E-value=2.3 Score=33.05 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=15.6
Q ss_pred eEEEECCCccEEEeeeCC
Q psy2724 8 ALVVDNGSGMCKAGFAGD 25 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~ 25 (174)
-+.||+|-.+++.|+..+
T Consensus 2 ~L~iDiGNT~~~~a~~~~ 19 (251)
T COG1521 2 LLLIDIGNTRIVFALYEG 19 (251)
T ss_pred eEEEEeCCCeEEEEEecC
Confidence 478999999999999873
No 64
>PRK13324 pantothenate kinase; Reviewed
Probab=88.48 E-value=7.2 Score=30.43 Aligned_cols=18 Identities=28% Similarity=0.375 Sum_probs=15.5
Q ss_pred eEEEECCCccEEEeeeCC
Q psy2724 8 ALVVDNGSGMCKAGFAGD 25 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~ 25 (174)
.+.||+|-.++|.|+..+
T Consensus 2 iL~iDiGNT~ik~gl~~~ 19 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDG 19 (258)
T ss_pred EEEEEeCCCceEEEEEEC
Confidence 478999999999998753
No 65
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=88.03 E-value=4.7 Score=32.83 Aligned_cols=149 Identities=15% Similarity=0.216 Sum_probs=76.2
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCC----CCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeec
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAP----RAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIIT 78 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P----~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~ 78 (174)
+++...|-||+|+.++.+=|+.-..- ....|-.. ++..+ ..+++. .++.|+..---.
T Consensus 2 te~ilSVGIDiGTsTTQvifS~lel~Nmas~~~VPri~-----------------ii~kd-i~~rS~-i~FTPv~~q~~i 62 (473)
T COG4819 2 TEQILSVGIDIGTSTTQVIFSKLELVNMASVSQVPRIE-----------------IIKKD-ISWRSP-IFFTPVDKQGGI 62 (473)
T ss_pred cceeeeeeeeccCceeeeeeeeeEEeecccccccceEE-----------------EEecc-eeeecc-eeeeeecccCCc
Confidence 46778899999999999988752210 01111111 11111 111111 234566544445
Q ss_pred CHHHHHHHHHHhhccccccCCC---CCceEEeeCCCCChHHHHHH---HHHhhhhcCCCeeeeehhhhHHhhhcC-----
Q psy2724 79 NWDDMEKIWHHTFYNELRVAPE---EHPILLTEAPLNPKANREKM---TQIMFETFNTPAMYVAIQAVLSLYASG----- 147 (174)
Q Consensus 79 d~~~~~~l~~~~~~~~L~~~~~---~~~vll~e~~~~~~~~r~~l---~e~lFE~~~~~sv~~~~~~~la~~~~g----- 147 (174)
|.++++.+...=| ..-++.|+ .-.+++|-...-.+..|..+ ...+ -.|-+.+-----+++.|--++|
T Consensus 63 d~~alk~~v~eeY-~~AGi~pesi~sGAvIITGEtArk~NA~~vl~alSg~a-GDFVVAtAGPdLESiIAGkGaGA~t~S 140 (473)
T COG4819 63 DEAALKKLVLEEY-QAAGIAPESIDSGAVIITGETARKRNARPVLMALSGSA-GDFVVATAGPDLESIIAGKGAGAQTLS 140 (473)
T ss_pred cHHHHHHHHHHHH-HHcCCChhccccccEEEeccccccccchHHHHHhhhcc-cceEEEecCCCHHHHhccCCccccchh
Confidence 7788888877666 45566665 35677775544333333322 2111 1222211111122333333333
Q ss_pred --CCe-EEEEecCCCceEEEeeeCCeec
Q psy2724 148 --RTT-GIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 148 --~~t-glVVDiG~~~t~v~pV~dG~~~ 172 (174)
+.| -+=+|+|.+.|...=+-.|.+.
T Consensus 141 eqr~t~v~NlDIGGGTtN~slFD~Gkv~ 168 (473)
T COG4819 141 EQRLTRVLNLDIGGGTTNYSLFDAGKVS 168 (473)
T ss_pred hhhceEEEEEeccCCccceeeecccccc
Confidence 333 4558999999998766666543
No 66
>cd08627 PI-PLCc_gamma1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=87.55 E-value=1.5 Score=33.50 Aligned_cols=44 Identities=25% Similarity=0.367 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+|+| ..+++||+++-....+.+++++|++++-|.||=
T Consensus 74 dv~~~I~~~AF------~~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (229)
T cd08627 74 DVLHTIKEHAF------VTSEYPIILSIEDHCSIVQQRNMAQHFKKVFGD 117 (229)
T ss_pred HHHHHHHHhhc------cCCCCCEEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 45666666666 347899999999999999999999999998875
No 67
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=87.38 E-value=4.1 Score=31.41 Aligned_cols=18 Identities=17% Similarity=0.296 Sum_probs=15.3
Q ss_pred EEEECCCccEEEeeeCCC
Q psy2724 9 LVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~ 26 (174)
++||+|-.++|+|+-.++
T Consensus 2 L~iDiGNT~i~~g~~~~~ 19 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGN 19 (243)
T ss_pred EEEEECCCcEEEEEEECC
Confidence 689999999999987643
No 68
>TIGR03367 queuosine_QueD queuosine biosynthesis protein QueD. Members of this protein family, closely related to eukaryotic 6-pyruvoyl tetrahydrobiopterin synthase enzymes, are the QueD protein of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of tRNAs for Tyr, His, Asp, and Asn in many species. This modification, although widespread, appears not to be important for viability. The queuosine precursor made by this enzyme may be converted instead to archeaosine as in some Archaea.
Probab=87.32 E-value=1.2 Score=28.91 Aligned_cols=50 Identities=18% Similarity=0.494 Sum_probs=35.3
Q ss_pred cCCeecCHHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcC
Q psy2724 73 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 129 (174)
Q Consensus 73 ~~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~ 129 (174)
+.|++.|+..+++.++.+. +.| ++..|.-.+.+. ...-|.|++++|+.+.
T Consensus 42 ~~g~v~Df~~lk~~~~~i~-~~l-----Dh~~Lne~~~~~-~pT~E~ia~~i~~~l~ 91 (92)
T TIGR03367 42 EAGMVMDFSDLKAIVKEVV-DRL-----DHALLNDVPGLE-NPTAENLARWIYDRLK 91 (92)
T ss_pred CccEEEEHHHHHHHHHHHH-HhC-----CCcEeeCCCCCC-CCCHHHHHHHHHHHHh
Confidence 4799999999999998766 333 455555444443 3456889999998764
No 69
>cd08626 PI-PLCc_beta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 4. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=86.84 E-value=1.6 Score=33.96 Aligned_cols=44 Identities=20% Similarity=0.308 Sum_probs=36.7
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+|+-....+.+++++|++++-|.||=
T Consensus 76 dv~~aI~~~AF~------~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 119 (257)
T cd08626 76 DVIQAIKDTAFV------TSDYPVILSFENHCSKPQQYKLAKYCEEIFGD 119 (257)
T ss_pred HHHHHHHHHhcc------cCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 566777777772 47899999999999999999999999888774
No 70
>cd08630 PI-PLCc_delta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta3 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This family corresponds to the catalytic domain wh
Probab=86.64 E-value=1.7 Score=33.84 Aligned_cols=44 Identities=14% Similarity=0.256 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+++-....+.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~AF~------~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~~Gd 117 (258)
T cd08630 74 DVIQAVRQHAFT------ASPYPVILSLENHCGLEQQAAMARHLQTILGD 117 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHhh
Confidence 556667777772 47899999999999999999999999888774
No 71
>cd08632 PI-PLCc_eta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=86.42 E-value=1.8 Score=33.57 Aligned_cols=44 Identities=25% Similarity=0.378 Sum_probs=36.4
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+++-....+.++++++++++-|.||=
T Consensus 74 dv~~aI~~~AF------~~S~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (253)
T cd08632 74 DVIETINKYAF------VKNEFPVILSIENHCSIQQQKKIAQYLKEIFGD 117 (253)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhh
Confidence 55666777776 257899999999999999999999999887764
No 72
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=86.35 E-value=1.8 Score=36.16 Aligned_cols=51 Identities=12% Similarity=0.051 Sum_probs=41.4
Q ss_pred HHHhhhhcCCCeeeeehhhhHHhhhcC-----CCeEEEEecCCCceEEEeeeCCee
Q psy2724 121 TQIMFETFNTPAMYVAIQAVLSLYASG-----RTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 121 ~e~lFE~~~~~sv~~~~~~~la~~~~g-----~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
.+-++|+-+..--.++-+|++++.+.= .-..++||+|++.|+|.-..+|.+
T Consensus 170 l~k~v~r~gl~v~~i~l~plAsa~a~L~~dEkelGv~lIDiG~GTTdIai~~~G~l 225 (418)
T COG0849 170 LEKCVERAGLKVDNIVLEPLASALAVLTEDEKELGVALIDIGGGTTDIAIYKNGAL 225 (418)
T ss_pred HHHHHHHhCCCeeeEEEehhhhhhhccCcccHhcCeEEEEeCCCcEEEEEEECCEE
Confidence 344568888877778888888887763 468899999999999999998875
No 73
>PRK13318 pantothenate kinase; Reviewed
Probab=86.26 E-value=14 Score=28.64 Aligned_cols=18 Identities=22% Similarity=0.259 Sum_probs=15.6
Q ss_pred eEEEECCCccEEEeeeCC
Q psy2724 8 ALVVDNGSGMCKAGFAGD 25 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~ 25 (174)
.+.||+|..++|+|+..+
T Consensus 2 iL~IDIGnT~iK~al~d~ 19 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEG 19 (258)
T ss_pred EEEEEECCCcEEEEEEEC
Confidence 478999999999999763
No 74
>cd08596 PI-PLCc_epsilon Catalytic domain of metazoan phosphoinositide-specific phospholipase C-epsilon. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-epsilon isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-epsilon represents a class of mammalian PI-PLC that has an N-terminal CDC25 homology domain with a guanyl-nucleotide exchange factor (GFF) activity, a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core
Probab=86.16 E-value=1.9 Score=33.59 Aligned_cols=44 Identities=23% Similarity=0.356 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+++-....+.+++++|++++-|.||=
T Consensus 74 dv~~~I~~~AF~------~S~yPvIlslE~Hcs~~qQ~~ma~~l~~~~Gd 117 (254)
T cd08596 74 DVVEAINRSAFI------TSDYPVILSIENHCSLQQQRKMAEIFKTVFGE 117 (254)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456666677772 47899999999999999999999999887774
No 75
>cd08629 PI-PLCc_delta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta1 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This subfamily corresponds to the catalytic domain
Probab=86.08 E-value=1.8 Score=33.66 Aligned_cols=44 Identities=14% Similarity=0.204 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-....+.+++++|++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~S~yPvIlsLE~Hcs~~qQ~~ma~~l~~~lGd 117 (258)
T cd08629 74 DVLRAIRDYAF------KASPYPVILSLENHCSLEQQRVMARHLRAILGP 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45666666666 247899999999999999999999999888774
No 76
>cd08595 PI-PLCc_zeta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-zeta. This family corresponds to the catalytic domain presenting in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-zeta isozyme. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-zeta represents a class of sperm-specific PI-PLC that has an N-terminal EF-hand domain, a PLC catalytic core domain, and a C-terminal C2 domain. The PLC catalytic core domain is a TIM barrel with two highly conserved regions (X and Y)
Probab=86.01 E-value=1.9 Score=33.62 Aligned_cols=44 Identities=11% Similarity=0.246 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-....+.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~~a~~l~~~lgd 117 (257)
T cd08595 74 EVITTVEKYAF------EKSDYPVVLSLENHCSTEQQEIMAHYLVSILGE 117 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 56666777776 257899999999999999999999999887764
No 77
>cd08594 PI-PLCc_eta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding motif,
Probab=85.98 E-value=2 Score=32.83 Aligned_cols=44 Identities=25% Similarity=0.335 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+|+-....+.+++++|++++-|.||-
T Consensus 74 dv~~aI~~~AF~------~s~yPvIlSlE~Hcs~~qQ~~ma~~l~~~lGd 117 (227)
T cd08594 74 DVIETINKYAFI------KNEYPVILSIENHCSVQQQKKMAQYLKEILGD 117 (227)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 456666667662 47899999999999999999999999888774
No 78
>cd08631 PI-PLCc_delta4 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta4. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta4 isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which
Probab=85.97 E-value=1.9 Score=33.64 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+++-....+.+++++|++++-|.||=
T Consensus 74 ~v~~~Ik~~AF------~~s~yPvIlslE~Hc~~~qQ~~ma~~l~~~lGd 117 (258)
T cd08631 74 DVVAAVAQYAF------QVSDYPVILSLENHCGVEQQQTMAQHLTEILGE 117 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 45666666666 347899999999999999999999999887763
No 79
>cd08593 PI-PLCc_delta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-delta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-delta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-delta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C-terminal C2 domain. This CD corresponds to the catalytic domain which is
Probab=85.84 E-value=1.9 Score=33.62 Aligned_cols=44 Identities=16% Similarity=0.201 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+|+-....+.++++++++++-|.||-
T Consensus 74 ~v~~~I~~~aF~------~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 117 (257)
T cd08593 74 DVIQAIREYAFK------VSPYPVILSLENHCSVEQQKVMAQHLKSILGD 117 (257)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 566667777762 47899999999999999999999999888774
No 80
>cd08633 PI-PLCc_eta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-eta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-eta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-eta represents a class of neuron-speific PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal tail that terminates with a PDZ-binding m
Probab=85.60 E-value=2.1 Score=33.28 Aligned_cols=44 Identities=25% Similarity=0.346 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+|+| ..+++||+++-....+.++++++++++-|.||=
T Consensus 74 ~v~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08633 74 DVIETINKYAF------IKNEYPVILSIENHCSVPQQKKMAQYLTEILGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHHhH
Confidence 55666777777 247899999999999999999999999887764
No 81
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=85.42 E-value=3.6 Score=30.11 Aligned_cols=22 Identities=14% Similarity=0.279 Sum_probs=18.3
Q ss_pred cccCCeecCHHHHHHHHHHhhc
Q psy2724 71 PIEHGIITNWDDMEKIWHHTFY 92 (174)
Q Consensus 71 p~~~g~i~d~~~~~~l~~~~~~ 92 (174)
-+++|.|.|.+.+.+.++.++.
T Consensus 36 gi~~G~I~d~~~~~~~I~~ai~ 57 (187)
T smart00842 36 GIRKGVIVDIEAAARAIREAVE 57 (187)
T ss_pred CccCcEEECHHHHHHHHHHHHH
Confidence 3788999999998888888873
No 82
>cd08591 PI-PLCc_beta Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for homod
Probab=85.15 E-value=2.2 Score=33.24 Aligned_cols=44 Identities=25% Similarity=0.343 Sum_probs=36.1
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-....+.+++++|++++-|.||=
T Consensus 76 ~v~~aIk~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 119 (257)
T cd08591 76 DVIEAIAETAF------KTSEYPVILSFENHCSSKQQAKMAEYCREIFGD 119 (257)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 45666666666 257899999999999999999999999888774
No 83
>cd08592 PI-PLCc_gamma Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma. This family corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozymes. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain.The PLC catalytic core domain is a TIM barrel with two highl
Probab=84.80 E-value=2.4 Score=32.48 Aligned_cols=44 Identities=25% Similarity=0.395 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-...++.++++++++++-|.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~ma~il~~~lGd 117 (229)
T cd08592 74 DVLKTIKEHAF------VTSEYPVILSIENHCSLPQQRNMAQAFKEVFGD 117 (229)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHhH
Confidence 45666666666 357899999999999999999999999888775
No 84
>cd08598 PI-PLC1c_yeast Catalytic domain of putative yeast phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of putative phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) encoded by PLC1 genes from yeasts, which are homologs of the delta isoforms of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The prototype of this CD is protein Plc1p encoded by PLC1 genes fro
Probab=84.39 E-value=2.5 Score=32.42 Aligned_cols=44 Identities=27% Similarity=0.360 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-....+.+++++++++|-|.||-
T Consensus 74 dv~~~Ik~~aF------~~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lG~ 117 (231)
T cd08598 74 DVCRAIKKYAF------VTSPYPLILSLEVHCDAEQQERMVEIMKETFGD 117 (231)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 55666667776 247899999999999999999999999888875
No 85
>cd08597 PI-PLCc_PRIP_metazoa Catalytic domain of metazoan phospholipase C related, but catalytically inactive protein. This family corresponds to the catalytic domain present in metazoan phospholipase C related, but catalytically inactive proteins (PRIP), which belong to a group of novel Inositol 1,4,5-trisphosphate (InsP3) binding protein. PRIP has a primary structure and domain architecture, incorporating a pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain with highly conserved X- and Y-regions split by a linker sequence, and a C-terminal C2 domain, similar to phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11)-delta isoforms. Due to replacement of critical catalytic residues, PRIP do not have PLC enzymatic activity. PRIP consists of two subfamilies, PRIP-1(previously known as p130 or PLC-1), which is predominantly expressed in the brain, and PRIP-2 (previously known as PLC-2), which exhibits a relatively ubiquitous expression. Experiment
Probab=83.29 E-value=2.8 Score=32.75 Aligned_cols=44 Identities=23% Similarity=0.279 Sum_probs=36.0
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-...++.+++++++++|-|.||-
T Consensus 74 dv~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~l~~~lG~ 117 (260)
T cd08597 74 SVIEAINEYAF------VASEYPLILCIENHCSEKQQLVMAQYLKEIFGD 117 (260)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 45666666666 247899999999999999999999999888774
No 86
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=82.96 E-value=19 Score=27.60 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.9
Q ss_pred CeEEEEecCCCceEEEeeeCCeec
Q psy2724 149 TTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
....|||+|.+.|.++-+-+|.+.
T Consensus 91 ~~~~vidiGgqd~k~i~~~~g~~~ 114 (248)
T TIGR00241 91 EARGVIDIGGQDSKVIKIDDGKVD 114 (248)
T ss_pred CCCEEEEecCCeeEEEEECCCcEe
Confidence 344699999999999998888764
No 87
>cd08558 PI-PLCc_eukaryota Catalytic domain of eukaryotic phosphoinositide-specific phospholipase C and similar proteins. This family corresponds to the catalytic domain present in eukaryotic phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11) and similar proteins. The higher eukaryotic PI-PLCs play a critical role in most signal transduction pathways, controlling numerous cellular events such as cell growth, proliferation, excitation and secretion. They strictly require Ca2+ for the catalytic activity. They display a clear preference towards the hydrolysis of the more highly phosphorylated membrane phospholipids PI-analogues, phosphatidylinositol 4,5-bisphosphate (PIP2) and phosphatidylinositol-4-phosphate (PIP), to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein ki
Probab=82.88 E-value=3.2 Score=31.75 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=37.0
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTP 131 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~ 131 (174)
|.++.|=+++|. .+++||+|+-....+.++++++++++-+.||-.
T Consensus 74 dv~~~Ik~~aF~------~s~yPvILslE~Hcs~~qQ~~ma~~l~~~lGd~ 118 (226)
T cd08558 74 DVIEAIKEYAFV------TSPYPVILSLENHCSLEQQKKMAQILKEIFGDK 118 (226)
T ss_pred HHHHHHHHHhcc------cCCCCeEEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 566667777773 479999999999999999999999998888743
No 88
>cd08628 PI-PLCc_gamma2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-gamma2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-gamma isozyme 2. PI-PLC is a signaling enzyme that hydrolyze the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PI-PLC-gamma represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, and a C2 domain. The PLC catalytic core domain is a TIM barrel with tw
Probab=81.63 E-value=3.8 Score=31.92 Aligned_cols=44 Identities=23% Similarity=0.409 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++| ..+++||+|+-...++.+++++++++|-|.||-
T Consensus 74 dv~~~I~~~AF------~~s~yPvIlslE~Hcs~~qQ~~ma~~l~~~lGd 117 (254)
T cd08628 74 DVVQAIKDHAF------VTSEYPVILSIEEHCSVEQQRHMAKVFKEVFGD 117 (254)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEeccCCHHHHHHHHHHHHHHHhH
Confidence 45666667776 247899999999999999999999998887774
No 89
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=81.50 E-value=8.3 Score=30.01 Aligned_cols=39 Identities=15% Similarity=0.155 Sum_probs=31.3
Q ss_pred eeehhhhHHhhhc-------CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 134 YVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 134 ~~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
.+.....+|.++. .....+|||+|.++|-..-|.+|.+.
T Consensus 145 ~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~~~rI~ 190 (254)
T PF08735_consen 145 VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVKDGRIY 190 (254)
T ss_pred eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEeCCEEE
Confidence 5667777776654 35789999999999999999998874
No 90
>cd08623 PI-PLCc_beta1 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta1. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 1. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=81.50 E-value=3.7 Score=32.02 Aligned_cols=45 Identities=22% Similarity=0.261 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCC-ChHHHHHHHHHhhhhcCCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNTP 131 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lFE~~~~~ 131 (174)
|.++.|=+++| ..+++||+|+-.... +.+++++|++++-|.||=.
T Consensus 76 dv~~~I~~~AF------~~S~yPvIlSlE~Hc~s~~qQ~~ma~~l~~~lGd~ 121 (258)
T cd08623 76 EVIEAIAECAF------KTSPFPILLSFENHVDSPKQQAKMAEYCRLIFGDA 121 (258)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhhh
Confidence 55666777777 257899999988888 5899999999998888753
No 91
>cd08624 PI-PLCc_beta2 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta2. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 2. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=81.02 E-value=3.8 Score=32.00 Aligned_cols=44 Identities=20% Similarity=0.283 Sum_probs=35.4
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCC-ChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+|+-.... +.+++++|+++|-|.||-
T Consensus 76 dv~~~I~~~AF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~~lGd 120 (261)
T cd08624 76 DAIEAIAESAFK------TSPYPVILSFENHVDSPKQQAKMAEYCRTIFGD 120 (261)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHhh
Confidence 556666677772 47999999988777 688999999999888875
No 92
>KOG0100|consensus
Probab=80.96 E-value=3.9 Score=34.17 Aligned_cols=62 Identities=15% Similarity=0.118 Sum_probs=46.4
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcC------CCeEEEEecCCCceEEE
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASG------RTTGIVLDSGDGVSHTV 164 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g------~~tglVVDiG~~~t~v~ 164 (174)
...+++.|.+....+|+..-.. =---+..-+.+++.|.+|+.++| ..+-||.|+|.+.-.|.
T Consensus 173 ~~AVvTvPAYFNDAQrQATKDA-GtIAgLnV~RIiNePTaAAIAYGLDKk~gEknilVfDLGGGTFDVS 240 (663)
T KOG0100|consen 173 THAVVTVPAYFNDAQRQATKDA-GTIAGLNVVRIINEPTAAAIAYGLDKKDGEKNILVFDLGGGTFDVS 240 (663)
T ss_pred cceEEecchhcchHHHhhhccc-ceeccceEEEeecCccHHHHHhcccccCCcceEEEEEcCCceEEEE
Confidence 4578899999988888865432 11234455778999999988886 47889999999987665
No 93
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=80.30 E-value=14 Score=30.83 Aligned_cols=24 Identities=13% Similarity=0.297 Sum_probs=20.1
Q ss_pred CeEEEEecCCCceEEEeeeCCeec
Q psy2724 149 TTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 149 ~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
....|+|||.+-+-++-+-+|.+.
T Consensus 241 ~v~TIIDIGGQDsK~I~l~~G~v~ 264 (404)
T TIGR03286 241 GPATVIDIGGMDNKAISVWDGIPD 264 (404)
T ss_pred CCcEEEEeCCCceEEEEEcCCcee
Confidence 578999999999988887777653
No 94
>cd08625 PI-PLCc_beta3 Catalytic domain of metazoan phosphoinositide-specific phospholipase C-beta3. This subfamily corresponds to the catalytic domain present in metazoan phosphoinositide-specific phospholipase C (PI-PLC, EC 3.1.4.11)-beta isozyme 3. PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, Inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which goes on to phosphorylate other molecules, leading to altered cellular activity. Calcium is required for the catalysis. PLC-beta represents a class of mammalian PI-PLC that has an N-terminal pleckstrin homology (PH) domain, an array of EF hands, a PLC catalytic core domain, a C2 domain, and a unique C-terminal coiled-coil (CT) domain necessary for ho
Probab=79.50 E-value=4.2 Score=31.75 Aligned_cols=44 Identities=20% Similarity=0.267 Sum_probs=34.9
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCC-ChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+++|. .+++||+|+-.... +.+++++|++++-|.||-
T Consensus 76 dv~~~I~~~aF~------~s~yPvIlslE~Hc~s~~qQ~~ma~~l~~ilGd 120 (258)
T cd08625 76 DVIEAIAESAFK------TSPYPVILSFENHVDSAKQQAKMAEYCRSIFGD 120 (258)
T ss_pred HHHHHHHHHhcc------CCCCCEEEEehhcCCCHHHHHHHHHHHHHHHHH
Confidence 556666777772 46899999988888 689999999999887764
No 95
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=78.15 E-value=30 Score=28.66 Aligned_cols=56 Identities=13% Similarity=0.106 Sum_probs=33.6
Q ss_pred HHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCceEEEeeeCCeecC
Q psy2724 115 ANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDHEGE 173 (174)
Q Consensus 115 ~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~t~v~pV~dG~~~~ 173 (174)
.=|+.+...++-....+.+ .-.+..|.|=. ...-.|+|||.+-+-++-|.||.+..
T Consensus 198 YGR~~v~~~~~aD~~~~Ei--~ah~kgA~~f~-p~~dtIiDIGGQD~K~i~i~dG~v~d 253 (396)
T COG1924 198 YGRNLVGAALGADKVVVEI--SAHAKGARYFA-PDVDTVIDIGGQDSKVIKLEDGKVDD 253 (396)
T ss_pred ccHHHhhhhhcCCcceeee--ehhHHHHHHhC-CCCcEEEEecCcceeEEEEeCCeeee
Confidence 3355555444444544443 22233333322 22229999999999999999998753
No 96
>TIGR00039 6PTHBS 6-pyruvoyl tetrahydropterin synthase/QueD family protein. This model has been downgraded from hypothetical_equivalog to subfamily. The animal enzymes are known to be 6-pyruvoyl tetrahydropterin synthase. The function of the bacterial branch of the sequence lineage had been thought to be the same, but many are now taken to be QueD, and enzyme of queuosine biosynthesis. Queuosine is a hypermodified base in the wobble position of some tRNAs in most species. A new model is built to be the QueD equivalog model.
Probab=77.53 E-value=4.4 Score=27.78 Aligned_cols=52 Identities=17% Similarity=0.432 Sum_probs=34.1
Q ss_pred cCCeecCHHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcC
Q psy2724 73 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 129 (174)
Q Consensus 73 ~~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~ 129 (174)
+.|++.|+..++++++.+....| +|..+.-.+.......-|.++.++|+.+.
T Consensus 44 ~~G~viDf~~lk~~~~~~~~~~l-----DH~~Ln~~~~~~~~pT~Enia~~i~~~l~ 95 (124)
T TIGR00039 44 KTGMVMDFSDLKKIVKEVIDEPL-----DHKLLNDDVNYLENPTSENVAVYIFDNLK 95 (124)
T ss_pred CceEEEEHHHHHHHHHHHhccCC-----CCceeccCCCCCCCCCHHHHHHHHHHHHH
Confidence 57999999999999988773323 44455433321223345778888887665
No 97
>PLN02223 phosphoinositide phospholipase C
Probab=76.96 E-value=5.6 Score=34.34 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=36.9
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
+.++.|=+|+|. .++++||+|+-....+.++++++++++-|.||=
T Consensus 179 ~vl~aI~~~AF~-----~s~~yPvIlslE~Hcs~~qQ~~~A~~l~~i~Gd 223 (537)
T PLN02223 179 ECLDAIKEHAFT-----KCRSYPLIITFKDGLKPDLQSKATQMIDQTFGD 223 (537)
T ss_pred HHHHHHHHHhhh-----cCCCCceEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 567777777772 234899999999999999999999999888774
No 98
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=75.83 E-value=36 Score=27.18 Aligned_cols=25 Identities=12% Similarity=0.148 Sum_probs=20.3
Q ss_pred CCeEEEEecCCCceEEEee-eCCeec
Q psy2724 148 RTTGIVLDSGDGVSHTVPI-YEDHEG 172 (174)
Q Consensus 148 ~~tglVVDiG~~~t~v~pV-~dG~~~ 172 (174)
.....|+|||.+-+-++-+ -+|.+.
T Consensus 124 p~v~tIIDIGGQDsK~I~~d~~G~v~ 149 (293)
T TIGR03192 124 NAVRTILDMGGQDCKAIHCDEKGKVT 149 (293)
T ss_pred CCCCEEEEeCCCceEEEEEcCCCcEe
Confidence 4678999999999999877 467654
No 99
>cd08599 PI-PLCc_plant Catalytic domain of plant phosphatidylinositide-specific phospholipases C. This family corresponds to the catalytic domain present in a group of phosphoinositide-specific phospholipases C (PI-PLC, EC 3.1.4.11) encoded by PLC genes from higher plants, which are homologs of mammalian PI-PLC in terms of overall sequence similarity and domain organization. Mammalian PI-PLC is a signaling enzyme that hydrolyzes the membrane phospholipids phosphatidylinositol-4,5-bisphosphate (PIP2) to generate two important second messengers in eukaryotic signal transduction cascades, inositol 1,4,5-trisphosphate (InsP3) and diacylglycerol (DAG). InsP3 triggers inflow of calcium from intracellular stores, while DAG, together with calcium, activates protein kinase C, which then phosphorylates other molecules, leading to altered cellular activity. Calcium is required for the catalysis. The domain arrangement of plant PI-PLCs is structurally similar to the mammalian PLC-zeta isoform, whi
Probab=75.38 E-value=8.3 Score=29.55 Aligned_cols=43 Identities=26% Similarity=0.338 Sum_probs=34.7
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 129 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~ 129 (174)
|.++.|=+++| ..+++||+|+-....+.++++++++++-+.||
T Consensus 74 dvl~~I~~~aF------~~s~yPvILslE~hcs~~qQ~~~a~~l~~~lG 116 (228)
T cd08599 74 DCIKAIKENAF------TASEYPVIITLENHLSPELQAKAAQILRETLG 116 (228)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEEecCCCHHHHHHHHHHHHHHHh
Confidence 44555555555 34789999998888899999999999999988
No 100
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=75.27 E-value=12 Score=27.94 Aligned_cols=18 Identities=28% Similarity=0.355 Sum_probs=15.0
Q ss_pred EEEECCCccEEEeeeCCC
Q psy2724 9 LVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 9 vViD~Gs~~~k~G~~g~~ 26 (174)
++||+|-.++|.|+..++
T Consensus 2 L~iDiGNT~ik~~~~~~~ 19 (206)
T PF03309_consen 2 LLIDIGNTRIKWALFDGD 19 (206)
T ss_dssp EEEEE-SSEEEEEEEETT
T ss_pred EEEEECCCeEEEEEEECC
Confidence 789999999999998655
No 101
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=74.64 E-value=4.3 Score=31.84 Aligned_cols=69 Identities=16% Similarity=0.198 Sum_probs=43.7
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee---hhhhHHhh----hc-CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA---IQAVLSLY----AS-GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~---~~~~la~~----~~-g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
..++.|. .+-....++.+.+.+.+..|++ +.++ .++.++.. +. ...+++|+|+|.++|.++-+-+|.+.
T Consensus 59 i~~vATs-A~R~A~N~~~~~~~i~~~tGi~-i~iIsgeeEa~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~~~~~~ 135 (285)
T PF02541_consen 59 IRAVATS-ALREAKNSDEFLDRIKKETGID-IEIISGEEEARLSFLGVLSSLPPDKNGLVIDIGGGSTELILFENGKVV 135 (285)
T ss_dssp EEEEEEH-HHHHSTTHHHHHHHHHHHHSS--EEEE-HHHHHHHHHHHHHHHSTTTSSEEEEEEESSEEEEEEEETTEEE
T ss_pred EEEEhhH-HHHhCcCHHHHHHHHHHHhCCc-eEEecHHHHHHHHHHHHHhhccccCCEEEEEECCCceEEEEEECCeee
Confidence 3344443 3333444566777888888876 3333 23333322 23 57899999999999999999888764
No 102
>PLN02230 phosphoinositide phospholipase C 4
Probab=74.30 E-value=7 Score=34.26 Aligned_cols=44 Identities=18% Similarity=0.273 Sum_probs=36.5
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
+.++.|-+|+| ..+++||+|+-....+.++++++++++-+.||-
T Consensus 187 ~v~~~I~~~aF------~~s~yPvIlslE~hcs~~~Q~~~a~~~~~~~Gd 230 (598)
T PLN02230 187 KCLDSIKANAF------AISKYPVIITLEDHLTPKLQFKVAKMITQTFGD 230 (598)
T ss_pred HHHHHHHHhcc------CCCCCCeEEEeccCCCHHHHHHHHHHHHHHHhh
Confidence 45666777776 347899999999999999999999999888774
No 103
>PLN02952 phosphoinositide phospholipase C
Probab=73.94 E-value=7.3 Score=34.16 Aligned_cols=44 Identities=14% Similarity=0.243 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
|.++.|=+|+| ..+++||+|+-...++.+++++|++++-|.||-
T Consensus 196 ~v~~~I~~~aF------~~s~yPvIlslE~Hcs~~qQ~~~a~~~~~~~g~ 239 (599)
T PLN02952 196 KCLKSIRDYAF------SSSPYPVIITLEDHLTPDLQAKVAEMATQIFGQ 239 (599)
T ss_pred HHHHHHHHHhc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 55666677776 246899999999999999999999999888774
No 104
>PLN02222 phosphoinositide phospholipase C 2
Probab=73.80 E-value=7.1 Score=34.13 Aligned_cols=44 Identities=18% Similarity=0.307 Sum_probs=35.9
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
+.++.|=+|+| ..+++||+|+-....+.+++++|++++-|.||=
T Consensus 176 ~v~~~I~~~aF------~~s~yPvIlslE~Hc~~~qQ~~~a~~~~~~~g~ 219 (581)
T PLN02222 176 KCLKAIRAHAF------DVSDYPVVVTLEDHLTPDLQSKVAEMVTEIFGE 219 (581)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEeecCCCHHHHHHHHHHHHHHHhh
Confidence 45666666666 347899999999999999999999999888774
No 105
>PLN02228 Phosphoinositide phospholipase C
Probab=72.81 E-value=8.1 Score=33.69 Aligned_cols=45 Identities=16% Similarity=0.282 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTP 131 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~ 131 (174)
+.++.|=+|+|. .+++||+|+-....+.+++++|++++-|.||-.
T Consensus 179 ~v~~~I~~~AF~------~s~yPvIlslE~hc~~~qQ~~~a~~~~~~lg~~ 223 (567)
T PLN02228 179 KCLNAIKDNAFQ------VSDYPVVITLEDHLPPNLQAQVAKMLTKTFRGM 223 (567)
T ss_pred HHHHHHHHhhcc------CCCCCEEEEeecCCCHHHHHHHHHHHHHHHhHh
Confidence 456667777772 478999999999999999999999998887743
No 106
>PRK13326 pantothenate kinase; Reviewed
Probab=71.25 E-value=47 Score=25.94 Aligned_cols=20 Identities=20% Similarity=0.348 Sum_probs=17.1
Q ss_pred ceEEEECCCccEEEeeeCCC
Q psy2724 7 AALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~ 26 (174)
--++||+|-.++|+|+..++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~ 26 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDN 26 (262)
T ss_pred EEEEEEeCCCeEEEEEEECC
Confidence 35899999999999998764
No 107
>PF13941 MutL: MutL protein
Probab=67.05 E-value=13 Score=31.53 Aligned_cols=73 Identities=16% Similarity=0.287 Sum_probs=50.4
Q ss_pred CCCceEEeeCCC------CChHHHHHHHHHhhhh-cCCCee---------eeehhhhHH-----hhhc-CCCeEEEEecC
Q psy2724 100 EEHPILLTEAPL------NPKANREKMTQIMFET-FNTPAM---------YVAIQAVLS-----LYAS-GRTTGIVLDSG 157 (174)
Q Consensus 100 ~~~~vll~e~~~------~~~~~r~~l~e~lFE~-~~~~sv---------~~~~~~~la-----~~~~-g~~tglVVDiG 157 (174)
...++.++++.+ +....|+.+.+++.+. .+.|.+ -+.+.|-+. +++- +...-++||+|
T Consensus 177 ~~~~~~~~~NV~P~i~~ln~~paR~~I~~~F~~~Ii~akGl~~~~~~~~~~i~PTP~AVl~~~~lla~~~~g~llvVDIG 256 (457)
T PF13941_consen 177 AGKEVVITENVMPKIDVLNVEPAREAIREVFLRHIIQAKGLSKLREMVDGPIMPTPAAVLRAAELLAEGGIGDLLVVDIG 256 (457)
T ss_pred CCCCEEEeCCCCCCCCCcChHHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhcccCCEEEEEcc
Confidence 357888888753 5678888888887764 233322 233333332 2455 67899999999
Q ss_pred CCceEEEeeeCCeec
Q psy2724 158 DGVSHTVPIYEDHEG 172 (174)
Q Consensus 158 ~~~t~v~pV~dG~~~ 172 (174)
...|+|-.+.+|.+.
T Consensus 257 GATTDVhSv~~~~~~ 271 (457)
T PF13941_consen 257 GATTDVHSVAEGSPE 271 (457)
T ss_pred CcccchhhhccCCcc
Confidence 999999999977654
No 108
>KOG0169|consensus
Probab=66.91 E-value=13 Score=33.33 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=36.2
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
+.++.|=+|+| ..+++||+++-....++.+++++++++-+.||=
T Consensus 361 ~vl~aIk~~AF------~~S~YPvIlsLE~Hc~~~qQ~~mA~~~~~ifGd 404 (746)
T KOG0169|consen 361 DVLRAIKKYAF------VTSPYPVILTLENHCSPDQQAKMAQMLKEIFGD 404 (746)
T ss_pred HHHHHHHHhcc------cCCCCCEEEEecccCCHHHHHHHHHHHHHHhhh
Confidence 45666666776 347999999999999999999999999888774
No 109
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=63.75 E-value=14 Score=31.38 Aligned_cols=71 Identities=18% Similarity=0.245 Sum_probs=45.5
Q ss_pred CCceEEeeCC------CCChHHHHHHHHHhhhhc-CCCee---------eeehhhhHH-----hhhcCC------CeEEE
Q psy2724 101 EHPILLTEAP------LNPKANREKMTQIMFETF-NTPAM---------YVAIQAVLS-----LYASGR------TTGIV 153 (174)
Q Consensus 101 ~~~vll~e~~------~~~~~~r~~l~e~lFE~~-~~~sv---------~~~~~~~la-----~~~~g~------~tglV 153 (174)
+.++.++++. .+....|+.+.+++.+.. +.|.+ .+.+.|-+. +++.+. ..-++
T Consensus 174 ~~~~~i~eNV~P~i~~ln~epaR~~I~~vF~~~Iv~akGl~~i~~~~~~~i~PTP~AV~~a~~~la~~~~~~~g~g~ll~ 253 (463)
T TIGR01319 174 DIFYRITDNVLPDLDHLNPEAAREAICDIFLKKIVEAKGLDNAEDFIGEELMPTPAAVFEAAKAIAEGTDKDDGIGDFIL 253 (463)
T ss_pred CceEEecCCcCCCCCCcCchHHHHHHHHHHHHHHhcCCCHHHHHHHhCCcccCCHHHHHHHHHHHHhccccccCcCCEEE
Confidence 3455677765 356888999988876543 22221 233333322 233332 45799
Q ss_pred EecCCCceEEEeeeCCee
Q psy2724 154 LDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 154 VDiG~~~t~v~pV~dG~~ 171 (174)
||+|...|+|-.+.+|.+
T Consensus 254 VDIGGATTDvhSv~~g~~ 271 (463)
T TIGR01319 254 IDIGGATTDVHSAAAGEL 271 (463)
T ss_pred EEcCccccchhhccCCCc
Confidence 999999999999999954
No 110
>KOG1265|consensus
Probab=63.36 E-value=14 Score=33.86 Aligned_cols=43 Identities=21% Similarity=0.309 Sum_probs=33.1
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcC
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 129 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~ 129 (174)
|.++.|-+.+| .++++||+++-..+.+++++.+|++++-+-||
T Consensus 388 dVleAIaEtAF------kTSpyPVILSfENH~s~kQQaKMa~ycr~IFG 430 (1189)
T KOG1265|consen 388 DVLEAIAETAF------KTSPYPVILSFENHCSPKQQAKMAEYCRDIFG 430 (1189)
T ss_pred HHHHHHHHhhc------cCCCCceEEeecccCCHHHHHHHHHHHHHHHH
Confidence 45555555555 46899999998888899999999998866554
No 111
>cd00470 PTPS 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.
Probab=62.91 E-value=12 Score=26.15 Aligned_cols=51 Identities=16% Similarity=0.361 Sum_probs=30.3
Q ss_pred CCeecCHHHHHHHHHHhhccccccCCCCCceEEee-CCC-CChHHHHHHHHHhhhhcC
Q psy2724 74 HGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTE-APL-NPKANREKMTQIMFETFN 129 (174)
Q Consensus 74 ~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e-~~~-~~~~~r~~l~e~lFE~~~ 129 (174)
.|++.|+..++++++..+.+.| +|..|-.. +.+ .....-|.|++++|+.+.
T Consensus 57 ~GmviDF~~lk~~l~~~i~~~l-----DH~~Ln~~~~~~~~~~PTaEniA~~i~~~l~ 109 (135)
T cd00470 57 TGMVMNLTDLKKAIEEAIMKPL-----DHKNLDDDVPYFADVVSTTENLAVYIWDNLQ 109 (135)
T ss_pred CCEEEEHHHHHHHHHHHHHhhc-----CCceeccccccccCCCCCHHHHHHHHHHHHH
Confidence 5999999999988755322333 33333221 111 112345788999998764
No 112
>KOG1794|consensus
Probab=61.88 E-value=83 Score=25.32 Aligned_cols=89 Identities=19% Similarity=0.220 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhccccccCCCC--CceEEeeCCCCChHHHHHHHHHhhhhcC--CCeeeeehhhhHHhhhc--CCCeEEEE
Q psy2724 81 DDMEKIWHHTFYNELRVAPEE--HPILLTEAPLNPKANREKMTQIMFETFN--TPAMYVAIQAVLSLYAS--GRTTGIVL 154 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~--~~vll~e~~~~~~~~r~~l~e~lFE~~~--~~sv~~~~~~~la~~~~--g~~tglVV 154 (174)
+.++.+.+.++ .+-+++.+. +.|.+..+-...+...+++.+.+=..|. +..+++..++.+++++. |...|+|+
T Consensus 47 ~rie~~i~~A~-~k~g~d~~~~lr~lgL~lSg~d~e~~~~~lv~~~R~~fps~ae~~~v~sDa~~sl~a~t~g~~~GiVL 125 (336)
T KOG1794|consen 47 SRIEDMIREAK-EKAGWDKKGPLRSLGLGLSGTDQEDKNRKLVTEFRDKFPSVAENFYVTSDADGSLAAATPGGEGGIVL 125 (336)
T ss_pred HHHHHHHHHHH-hhcCCCccCccceeeeecccCCchhHHHHHHHHHHHhccchhheeeeehhHHHHHhhcCCCCCCcEEE
Confidence 35667777777 455555544 6777777777777777777777755553 34688899999998876 45899999
Q ss_pred ecCCCceEEEeeeCCe
Q psy2724 155 DSGDGVSHTVPIYEDH 170 (174)
Q Consensus 155 DiG~~~t~v~pV~dG~ 170 (174)
=.|.++..-.-.-||-
T Consensus 126 iaGTgs~crl~~~DGs 141 (336)
T KOG1794|consen 126 IAGTGSNCRLVNPDGS 141 (336)
T ss_pred EecCCceeEEECCCCC
Confidence 9998887666555653
No 113
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=60.51 E-value=12 Score=23.80 Aligned_cols=19 Identities=16% Similarity=0.160 Sum_probs=16.1
Q ss_pred ceEEEECCCccEEEeeeCC
Q psy2724 7 AALVVDNGSGMCKAGFAGD 25 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~ 25 (174)
..+.||+|+..+|+|+..+
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~ 20 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDE 20 (99)
T ss_pred cEEEEccCCCeEEEEEECC
Confidence 4689999999999998753
No 114
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=58.18 E-value=29 Score=29.18 Aligned_cols=58 Identities=22% Similarity=0.324 Sum_probs=38.7
Q ss_pred ceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeeccccCCeecCHHHHHHH
Q psy2724 7 AALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKI 86 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p~~~g~i~d~~~~~~l 86 (174)
-.+.||+||..+++ ..|+-.|.-. =+.++.-.. -.+=+++|.|.|.++..+-
T Consensus 7 ~iv~LDIGTskV~~-lVge~~~~g~-i~iig~g~~--------------------------~SrGik~G~I~di~~~~~s 58 (418)
T COG0849 7 LIVGLDIGTSKVKA-LVGELRPDGR-LNIIGVGSH--------------------------PSRGIKKGVIVDLDAAAQS 58 (418)
T ss_pred eEEEEEccCcEEEE-EEEEEcCCCe-EEEEeeecc--------------------------cCcccccceEEcHHHHHHH
Confidence 68899999999998 5555545421 122222111 1234789999999998888
Q ss_pred HHHhhc
Q psy2724 87 WHHTFY 92 (174)
Q Consensus 87 ~~~~~~ 92 (174)
.+.+.+
T Consensus 59 I~~av~ 64 (418)
T COG0849 59 IKKAVE 64 (418)
T ss_pred HHHHHH
Confidence 888874
No 115
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=57.95 E-value=13 Score=33.16 Aligned_cols=29 Identities=24% Similarity=0.414 Sum_probs=24.6
Q ss_pred hhcCCCe--EEEEecCCCceEEEeeeCCeec
Q psy2724 144 YASGRTT--GIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 144 ~~~g~~t--glVVDiG~~~t~v~pV~dG~~~ 172 (174)
|=+|..+ .+++|+|..+|.+.-+.+|.+.
T Consensus 271 ~ltg~~~g~~i~~DmGGTStDva~i~~G~pe 301 (674)
T COG0145 271 YLTGLKAGNAIVFDMGGTSTDVALIIDGEPE 301 (674)
T ss_pred HhcccccCCEEEEEcCCcceeeeeeecCcEE
Confidence 3346666 9999999999999999999875
No 116
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=57.06 E-value=34 Score=28.53 Aligned_cols=22 Identities=9% Similarity=0.220 Sum_probs=17.9
Q ss_pred cccCCeecCHHHHHHHHHHhhc
Q psy2724 71 PIEHGIITNWDDMEKIWHHTFY 92 (174)
Q Consensus 71 p~~~g~i~d~~~~~~l~~~~~~ 92 (174)
-+++|.|.|.+++.+-++.++.
T Consensus 45 gi~~G~I~d~~~~~~aI~~av~ 66 (420)
T PRK09472 45 GMDKGGVNDLESVVKCVQRAID 66 (420)
T ss_pred CccCCEEEcHHHHHHHHHHHHH
Confidence 3678999999988888777774
No 117
>PF03612 EIIBC-GUT_N: Sorbitol phosphotransferase enzyme II N-terminus; InterPro: IPR011618 Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria. Escherichia coli consists of IIA protein, a IIC protein and a IIBC protein. This entry represents the N-terminal conserved region of the IIBC component.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=57.06 E-value=8.2 Score=28.42 Aligned_cols=34 Identities=29% Similarity=0.615 Sum_probs=26.3
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 41 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~ 41 (174)
++|.-.+|||.|. +.|.|. .|+..+||+--.+.-
T Consensus 60 deEi~~vVIDCGG-TlRCGi----YPkK~IpTINi~ptG 93 (183)
T PF03612_consen 60 DEEIACVVIDCGG-TLRCGI----YPKKRIPTINIHPTG 93 (183)
T ss_pred hHHeEEEEEecCC-ceeecc----ccccCCceeeeeeCC
Confidence 5788899999985 788876 788889987555443
No 118
>KOG0100|consensus
Probab=54.37 E-value=27 Score=29.42 Aligned_cols=113 Identities=17% Similarity=0.178 Sum_probs=59.7
Q ss_pred CCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCCCCccccCCCcceeecchhhhccCcceeecc--ccCC--eecC
Q psy2724 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTLKYP--IEHG--IITN 79 (174)
Q Consensus 4 ~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~p--~~~g--~i~d 79 (174)
-|.+.+|+|+|+.+.-+.+-. +.+-+...... +.+...|.+....|-...+..- -.+| .-.|
T Consensus 223 gEknilVfDLGGGTFDVSlLt-------IdnGVFeVlaT-------nGDThLGGEDFD~rvm~~fiklykkK~gkDv~kd 288 (663)
T KOG0100|consen 223 GEKNILVFDLGGGTFDVSLLT-------IDNGVFEVLAT-------NGDTHLGGEDFDQRVMEYFIKLYKKKHGKDVRKD 288 (663)
T ss_pred CcceEEEEEcCCceEEEEEEE-------EcCceEEEEec-------CCCcccCccchHHHHHHHHHHHHhhhcCCccchh
Confidence 467899999999999886543 22222221111 1344555554332211001000 1122 2235
Q ss_pred HHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 80 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 80 ~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
-.++.++++.+=..+--++.+.+--+=.|+.+.-..+.+.+++.=||+++.
T Consensus 289 nkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNm 339 (663)
T KOG0100|consen 289 NKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNM 339 (663)
T ss_pred hHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhh
Confidence 567888888775322223334444555677776666677777777776664
No 119
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=52.07 E-value=1.2e+02 Score=24.13 Aligned_cols=24 Identities=25% Similarity=0.422 Sum_probs=19.7
Q ss_pred CCeEEEEecCCCceEEEeeeCCee
Q psy2724 148 RTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 148 ~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
..-.||||+|.++|...-|-++.+
T Consensus 226 a~palvVd~GngHttaalvdedRI 249 (342)
T COG4012 226 ADPALVVDYGNGHTTAALVDEDRI 249 (342)
T ss_pred cCceEEEEccCCceEEEEecCCeE
Confidence 357899999999999887776655
No 120
>PF01242 PTPS: 6-pyruvoyl tetrahydropterin synthase; InterPro: IPR007115 The complex organic chemistry involved in the transformation of GTP to tetrahydrobiopterin is catalysed by only three enzymes: GTP cyclohydrolase I, 6-pyruvoyltetrahydropterin synthase and sepiapterin reductase. Tetrahydrobiopterin is the cofactor for several aromatic amino acid monooxygenases and the nitric oxide synthases. 6-Pyruvoyl tetrahydropterin synthase (PTPS) [] is a Zn-dependent metalloprotein, transforms dihydroneopterin triphosphate into 6-pyruvoyltetrahydropterin in the presence of Mg(II) and for which the crystal structure is known. The enzyme is a homohexameric, composed of a dimer of trimers. A transition metal binding site formed by the three histidine residues 23, 48 and 50 is present in each subunit, and bound Zn(II) is responsible for the enzymatic activity. Site-directed mutagenesis of each of these three histidine residues results in a complete loss of metal binding and enzymatic activity [, ]. The function of the bacterial branch of the sequence lineage appears not to have been established.; GO: 0003874 6-pyruvoyltetrahydropterin synthase activity, 0046872 metal ion binding, 0006729 tetrahydrobiopterin biosynthetic process; PDB: 3QNA_E 3QN9_A 3QN0_B 1Y13_C 3D7J_A 3I2B_J 2OBA_D 3M0N_A 2A0S_A 3LZE_A ....
Probab=51.13 E-value=14 Score=25.04 Aligned_cols=49 Identities=22% Similarity=0.565 Sum_probs=28.3
Q ss_pred cCCeecCHHHHHHHHHHhhccccccCCCCCceEEe-e-CCCCC--hHHHHHHHHHhhhhc
Q psy2724 73 EHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLT-E-APLNP--KANREKMTQIMFETF 128 (174)
Q Consensus 73 ~~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~-e-~~~~~--~~~r~~l~e~lFE~~ 128 (174)
+.|++.|+..++++++.+. +.| ++..+ - + |.+.. ...-|.+++++++.+
T Consensus 42 ~~g~v~DF~~lk~~~~~i~-~~l-----Dh~~L-n~~~~~~~~~~~pT~E~lA~~i~~~l 94 (123)
T PF01242_consen 42 EDGMVVDFGDLKKIIKEID-DQL-----DHKFL-NEDDPEFDDINNPTAENLARWIFERL 94 (123)
T ss_dssp TTSSSS-HHHHHHHHHHHH-HHH-----TTEEG-GHHSGCGCSSTS--HHHHHHHHHHHH
T ss_pred CCCEEEEHHHHHHHHHHHH-HHh-----Ccccc-cCCChhhhccCCCCHHHHHHHHHHHH
Confidence 5799999999999998755 333 23333 2 1 11111 244677888887754
No 121
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=47.69 E-value=18 Score=24.42 Aligned_cols=19 Identities=37% Similarity=0.490 Sum_probs=14.5
Q ss_pred eEEEECCCccEEEeeeCCC
Q psy2724 8 ALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~ 26 (174)
.++||+|+.++++-.+...
T Consensus 1 i~~iDiGs~~~~~~i~~~~ 19 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDG 19 (120)
T ss_dssp EEEEEE-SSSEEEEEEETT
T ss_pred CEEEEcCCCcEEEEEEEeC
Confidence 4789999999999776553
No 122
>PRK00568 carbon storage regulator; Provisional
Probab=47.09 E-value=23 Score=22.24 Aligned_cols=25 Identities=32% Similarity=0.626 Sum_probs=21.2
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRA 30 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~ 30 (174)
+|+....|++++...+|+|+. .|+.
T Consensus 15 gd~I~I~Vl~i~g~~VrlGI~---AP~~ 39 (76)
T PRK00568 15 DDNIHIKVISIDRGSVRLGFE---APES 39 (76)
T ss_pred CCCeEEEEEEEcCCEEEEEEE---CCCC
Confidence 578899999999999999994 4664
No 123
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=46.58 E-value=26 Score=27.95 Aligned_cols=55 Identities=16% Similarity=0.238 Sum_probs=41.8
Q ss_pred CChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEEee
Q psy2724 112 NPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 112 ~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~pV 166 (174)
..+.+.+++++.+-+.++++.-.-..++-||..++-. .--.|+|+|.++|...-|
T Consensus 92 t~~l~M~~iA~~l~~~lgv~V~igGvEAemAi~GALTTPGt~~PlaIlDmG~GSTDAsii 151 (332)
T PF08841_consen 92 TDKLQMQMIADELEEELGVPVEIGGVEAEMAILGALTTPGTDKPLAILDMGGGSTDASII 151 (332)
T ss_dssp -SS-TCHHHHHHHHHHHTSEEEEECEHHHHHHHHHTTSTT--SSEEEEEE-SSEEEEEEE
T ss_pred cccccHHHHHHHHHHHHCCceEEccccHHHHHhcccCCCCCCCCeEEEecCCCcccHHHh
Confidence 3455667889999999999988888899998887643 345789999999997654
No 124
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=44.59 E-value=19 Score=27.28 Aligned_cols=19 Identities=32% Similarity=0.328 Sum_probs=15.7
Q ss_pred eEEEECCCccEEEeeeCCC
Q psy2724 8 ALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~ 26 (174)
.+.||+||.++|+..-.++
T Consensus 2 ~lgiDiGTts~K~~l~d~~ 20 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDED 20 (245)
T ss_dssp EEEEEECSSEEEEEEEETT
T ss_pred EEEEEEcccceEEEEEeCC
Confidence 4789999999999876543
No 125
>PRK09557 fructokinase; Reviewed
Probab=42.63 E-value=1.6e+02 Score=22.98 Aligned_cols=50 Identities=14% Similarity=0.098 Sum_probs=32.8
Q ss_pred HHHHhhhhcCCCeeeeehhhhHHhhhc-------CCCeEEEEecCCCceEEEeeeCCee
Q psy2724 120 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 120 l~e~lFE~~~~~sv~~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
+.+.+-+.++.| +++.+.+-+++++. +..+.+.+.+|.+. -..-|.+|.+
T Consensus 88 l~~~l~~~~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtGi-G~giv~~G~l 144 (301)
T PRK09557 88 LDKDLSARLNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTGC-GAGVAINGRV 144 (301)
T ss_pred HHHHHHHHHCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccce-EEEEEECCEE
Confidence 455555677887 77888888887653 24666777777554 3344567764
No 126
>PF02201 SWIB: SWIB/MDM2 domain; InterPro: IPR003121 The SWI/SNF family of complexes, which are conserved from yeast to humans, are ATP-dependent chromatin-remodelling proteins that facilitate transcription activation []. The mammalian complexes are made up of 9-12 proteins called BAFs (BRG1-associated factors). The BAF60 family have at least three members: BAF60a, which is ubiquitous, BAF60b and BAF60c, which are expressed in muscle and pancreatic tissues, respectively. BAF60b is present in alternative forms of the SWI/SNF complex, including complex B (SWIB), which lacks BAF60a. The SWIB domain is a conserved region found within the BAF60b proteins [], and can be found fused to the C terminus of DNA topoisomerase in Chlamydia. MDM2 is an oncoprotein that acts as a cellular inhibitor of the p53 tumour suppressor by binding to the transactivation domain of p53 and suppressing its ability to activate transcription []. p53 acts in response to DNA damage, inducing cell cycle arrest and apoptosis. Inactivation of p53 is a common occurrence in neoplastic transformations. The core of MDM2 folds into an open bundle of four helices, which is capped by two small 3-stranded beta-sheets. It consists of a duplication of two structural repeats. MDM2 has a deep hydrophobic cleft on which the p53 alpha-helix binds; p53 residues involved in transactivation are buried deep within the cleft of MDM2, thereby concealing the p53 transactivation domain. The SWIB and MDM2 domains are homologous and share a common fold.; GO: 0005515 protein binding; PDB: 1V31_A 3FE7_A 3JZQ_B 3EQY_B 2VYR_A 3JZO_A 3DAB_E 3LBJ_E 3FEA_A 3FDO_A ....
Probab=40.48 E-value=26 Score=21.69 Aligned_cols=31 Identities=16% Similarity=0.494 Sum_probs=22.6
Q ss_pred ecCHHHHHHHHHHhhccccccCCCCCceEEee
Q psy2724 77 ITNWDDMEKIWHHTFYNELRVAPEEHPILLTE 108 (174)
Q Consensus 77 i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e 108 (174)
.+--+.+..+|+|+-.+.| .+|.+...+.++
T Consensus 20 ~sr~~v~~~lw~YIk~~~L-~dp~~k~~I~cD 50 (76)
T PF02201_consen 20 LSRSEVVKRLWQYIKENNL-QDPKDKRIIICD 50 (76)
T ss_dssp EEHHHHHHHHHHHHHHTTS-BESSSTTEEE-T
T ss_pred CCHHHHHHHHHHHHHHhcC-CCcccCceEecC
Confidence 3445788999999987776 567777777764
No 127
>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length. The function of this family is unknown.
Probab=39.69 E-value=61 Score=26.50 Aligned_cols=27 Identities=11% Similarity=0.190 Sum_probs=23.8
Q ss_pred cCCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 146 SGRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 146 ~g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
+...+-++||+|++.|.++.|.+|.+.
T Consensus 151 y~~~nfIlvEiG~~yta~iaV~~GkIV 177 (343)
T PF07318_consen 151 YREVNFILVEIGSGYTAAIAVKNGKIV 177 (343)
T ss_pred cccceEEEEEccCCceEEEEEECCeEE
Confidence 445699999999999999999999874
No 128
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=39.62 E-value=1.1e+02 Score=23.95 Aligned_cols=50 Identities=16% Similarity=0.163 Sum_probs=37.7
Q ss_pred HHHHhhhhcCCCeeeeehhhhHHhhhc-------CCCeEEEEecCCCceEEEeeeCCee
Q psy2724 120 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 120 l~e~lFE~~~~~sv~~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
+.+.+=|.++.| +++.+.+-+++++. +..+.++|.+|.+. -..-|.+|.+
T Consensus 89 l~~~l~~~~~~p-v~v~NDa~~~alaE~~~g~~~~~~~~~~v~igtGi-G~giv~~G~~ 145 (318)
T TIGR00744 89 LKEKVEARVGLP-VVVENDANAAALGEYKKGAGKGARDVICITLGTGL-GGGIIINGEI 145 (318)
T ss_pred HHHHHHHHHCCC-EEEechHHHHHHHHHHhcccCCCCcEEEEEeCCcc-EEEEEECCEE
Confidence 555666778888 78899888887642 46789999999877 5556778875
No 129
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=38.71 E-value=50 Score=26.17 Aligned_cols=39 Identities=21% Similarity=0.247 Sum_probs=33.1
Q ss_pred CCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhh
Q psy2724 100 EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 139 (174)
Q Consensus 100 ~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~ 139 (174)
.+.-+++|||.-.-....+++.|++ +.|++|...+++..
T Consensus 186 aD~ai~VTEPTp~glhD~kr~~el~-~~f~ip~~iViNr~ 224 (284)
T COG1149 186 ADLAILVTEPTPFGLHDLKRALELV-EHFGIPTGIVINRY 224 (284)
T ss_pred CCEEEEEecCCccchhHHHHHHHHH-HHhCCceEEEEecC
Confidence 4778999999988888888888876 88999998888775
No 130
>KOG0102|consensus
Probab=38.63 E-value=53 Score=28.67 Aligned_cols=62 Identities=15% Similarity=0.098 Sum_probs=47.1
Q ss_pred CceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCC-----CeEEEEecCCCceEEE
Q psy2724 102 HPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-----TTGIVLDSGDGVSHTV 164 (174)
Q Consensus 102 ~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~-----~tglVVDiG~~~t~v~ 164 (174)
...+++.|.+....+|+..-.. -.-.+..-+-.+++|.+++.++|. ..-.|-|+|.+...|.
T Consensus 161 ~~avvtvpAyfndsqRqaTkda-g~iagl~vlrvineptaaalaygld~k~~g~iaV~dLgggtfdis 227 (640)
T KOG0102|consen 161 KNAVITVPAYFNDSQRQATKDA-GQIAGLNVLRVINEPTAAALAYGLDKKEDGVIAVFDLGGGTFDIS 227 (640)
T ss_pred hheeeccHHHHhHHHHHHhHhh-hhhccceeeccCCccchhHHhhcccccCCCceEEEEcCCceeeee
Confidence 4578899999999998866543 344566667788999999888873 4567899999987664
No 131
>TIGR00202 csrA carbon storage regulator (csrA). Modulates the expression of genes in the glycogen biosynthesis and gluconeogenesis pathways by accelerating the 5'-to-3' degradation of these transcripts through selective RNA binding. The N-terminal end of the sequence (AA 11-45) contains the KH motif which is characteristic of a set of RNA-binding proteins.
Probab=37.26 E-value=50 Score=20.30 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=20.5
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRA 30 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~ 30 (174)
+|+....|++.....+|.|+- .|+.
T Consensus 15 gd~I~I~Vl~i~g~~VrlGI~---AP~~ 39 (69)
T TIGR00202 15 GDDIEVKVLSVKGDQVKLGIE---APKE 39 (69)
T ss_pred CCCEEEEEEEEcCCeEEEEEE---CCCC
Confidence 577888999999999999994 4663
No 132
>TIGR03112 6_pyr_pter_rel 6-pyruvoyl tetrahydropterin synthase-related domain. Members of this family are small proteins, or small domains of larger proteins, that occur in certain Firmicutes in the same regions as members of families TIGR03110 and TIGR03111. Members of TIGR03110 resemble exosortase, a proposed protein sorting transpeptidase (see TIGR02602). TIGR03111 represents a small clade among the group 2 glycosyltransferases. Members of the current protein family resemble eukaryotic known and prokaryotic predicted 6-pyruvoyl tetrahydropterin synthases.
Probab=36.55 E-value=59 Score=21.93 Aligned_cols=49 Identities=14% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCeecCHHHHHHHHHHhhccccccCCCCCceEEeeCCCC-ChHHHHHHHHHhhhhcC
Q psy2724 74 HGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFN 129 (174)
Q Consensus 74 ~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~-~~~~r~~l~e~lFE~~~ 129 (174)
.|+ .|+..++++++.++. .+ +|..|--.+++. ....-|.|+..+|+++.
T Consensus 38 ~g~-vDf~~lk~~l~~v~~-~~-----DH~~LNdv~~f~~~~PTaEniA~~i~~~l~ 87 (113)
T TIGR03112 38 DKF-ILFNDVEKKVEKYLK-PY-----QNKYLNDLEPFDKINPTLENIGDYFFDEIK 87 (113)
T ss_pred CeE-EEHHHHHHHHHHHHH-cC-----CCceeccCCccCCCCCCHHHHHHHHHHHHH
Confidence 576 589999999988763 22 444444444442 13356888999988764
No 133
>smart00148 PLCXc Phospholipase C, catalytic domain (part); domain X. Phosphoinositide-specific phospholipases C. These enzymes contain 2 regions (X and Y) which together form a TIM barrel-like structure containing the active site residues. Phospholipase C enzymes (PI-PLC) act as signal transducers that generate two second messengers, inositol-1,4,5-trisphosphate and diacylglycerol. The bacterial enzyme [6] appears to be a homologue of the mammalian PLCs.
Probab=36.38 E-value=99 Score=21.38 Aligned_cols=43 Identities=26% Similarity=0.376 Sum_probs=29.3
Q ss_pred HHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCC
Q psy2724 82 DMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNT 130 (174)
Q Consensus 82 ~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~ 130 (174)
.++.+-++++ .. ...+|+|.-......+..+++++++-|.||-
T Consensus 74 vL~~i~~fl~-----~~-p~e~VIl~l~~~~~~~~~~~l~~~l~~~~g~ 116 (135)
T smart00148 74 VLEAIKDFAF-----VT-SPYPVILSLENHCSPDQQAKMAQMFKEIFGD 116 (135)
T ss_pred HHHHHHHHHH-----hC-CCCcEEEeehhhCCHHHHHHHHHHHHHHHhH
Confidence 4444554444 22 3567888877777778888899988887763
No 134
>COG0720 6-pyruvoyl-tetrahydropterin synthase [Coenzyme metabolism]
Probab=36.31 E-value=41 Score=23.18 Aligned_cols=50 Identities=16% Similarity=0.473 Sum_probs=31.1
Q ss_pred CeecCHHHHHHHHHHhhccccccCCCCCceEEeeCCC-CChHHHHHHHHHhhhhcCC
Q psy2724 75 GIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPL-NPKANREKMTQIMFETFNT 130 (174)
Q Consensus 75 g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~-~~~~~r~~l~e~lFE~~~~ 130 (174)
|++.|+..++.+.+.++ +.+ ||.+|.-.... ......+.++..+++.+..
T Consensus 47 Gmv~DF~~lk~~~k~i~-~~~-----DH~~Ln~~~~~~~~~pt~E~~a~~i~~~~~~ 97 (127)
T COG0720 47 GMVVDFGELKKAVKEIL-DEL-----DHKLLNDIEEFDKENPTAENIAKWIFDRLKV 97 (127)
T ss_pred CEEEEHHHHHHHHHHhh-hcc-----ChHhhcCCccccccCchHHHHHHHHHHHHHH
Confidence 99999999998888887 333 33333322221 1344557778777776543
No 135
>TIGR00825 EIIBC-GUT PTS system, glucitol/sorbitol-specific, IIBC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Gut family consists only of glucitol-specific permeases, but these occur both in Gram-negative and Gram-positive bacteria.E. coli consists of IIA protein, a IIC protein and a IIBC protein. This family is specific for the IIBC component.
Probab=35.77 E-value=32 Score=27.44 Aligned_cols=34 Identities=24% Similarity=0.542 Sum_probs=25.4
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeCC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRH 41 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~~ 41 (174)
++|.-.+|||.|. +.|.|. .|+..+||.--.+..
T Consensus 60 deEi~~vIIDCGG-TlRCGi----YPkK~IpTINi~ptg 93 (331)
T TIGR00825 60 EEEIGVAVIDCGG-TLRCGI----YPKRRIPTINIHPTG 93 (331)
T ss_pred hhhEEEEEEecCC-eeeecc----cccCCCceeeeccCC
Confidence 5778899999985 688876 688888887554433
No 136
>PF14606 Lipase_GDSL_3: GDSL-like Lipase/Acylhydrolase family; PDB: 3SKV_B.
Probab=34.98 E-value=98 Score=22.78 Aligned_cols=62 Identities=16% Similarity=0.183 Sum_probs=33.7
Q ss_pred CHHHHHHHHHHhhccccccCCCCCceEEeeCCCCC-----------hHHHHHHHHHhhhhc---CCCeeeeehhhhH
Q psy2724 79 NWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNP-----------KANREKMTQIMFETF---NTPAMYVAIQAVL 141 (174)
Q Consensus 79 d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~-----------~~~r~~l~e~lFE~~---~~~sv~~~~~~~l 141 (174)
+-+.+++-+...+ +.++-.-.+.|++++++...+ ........+-.+|++ +.+.++++...-+
T Consensus 72 ~~~~~~~~~~~fv-~~iR~~hP~tPIllv~~~~~~~~~~~~~~~~~~~~~~~~~r~~v~~l~~~g~~nl~~l~g~~l 147 (178)
T PF14606_consen 72 SPEEFRERLDGFV-KTIREAHPDTPILLVSPIPYPAGYFDNSRGETVEEFREALREAVEQLRKEGDKNLYYLDGEEL 147 (178)
T ss_dssp CTTTHHHHHHHHH-HHHHTT-SSS-EEEEE----TTTTS--TTS--HHHHHHHHHHHHHHHHHTT-TTEEEE-HHHC
T ss_pred CHHHHHHHHHHHH-HHHHHhCCCCCEEEEecCCccccccCchHHHHHHHHHHHHHHHHHHHHHcCCCcEEEeCchhh
Confidence 3344555554444 455555568999999965433 123334455567777 9999999987764
No 137
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=34.90 E-value=27 Score=27.62 Aligned_cols=27 Identities=26% Similarity=0.309 Sum_probs=19.5
Q ss_pred CCCceEEEECCCccEEEeeeCCCCCCC
Q psy2724 4 DDVAALVVDNGSGMCKAGFAGDDAPRA 30 (174)
Q Consensus 4 ~~~~~vViD~Gs~~~k~G~~g~~~P~~ 30 (174)
...+.|++|+|+.++.++.-.+-.|..
T Consensus 75 g~~~~i~vDmGGTTtDi~~i~~G~p~~ 101 (290)
T PF01968_consen 75 GLENAIVVDMGGTTTDIALIKDGRPEI 101 (290)
T ss_dssp T-SSEEEEEE-SS-EEEEEEETTEE--
T ss_pred CCCCEEEEeCCCCEEEEEEEECCeeec
Confidence 456899999999999999998777763
No 138
>COG0813 DeoD Purine-nucleoside phosphorylase [Nucleotide transport and metabolism]
Probab=34.34 E-value=2.2e+02 Score=21.96 Aligned_cols=65 Identities=15% Similarity=0.317 Sum_probs=42.8
Q ss_pred cccCCeecCHHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhH
Q psy2724 71 PIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVL 141 (174)
Q Consensus 71 p~~~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~l 141 (174)
|.+--.+.||+.++...+.+ ++++++...-.++-++-..+++... .+ +..++|+.+|-+--.++.
T Consensus 123 ~~df~~~ad~~Ll~~a~~~A--~e~gi~~hvgnv~ssD~FY~~~~~~---~~-~~~~~gvlaVeMEaaalY 187 (236)
T COG0813 123 PHDFAPIADFELLEKAYETA--KELGIDTHVGNVFSSDLFYNPDTEM---FD-LMAKYGVLAVEMEAAALY 187 (236)
T ss_pred cccccccCCHHHHHHHHHHH--HHhCCceeeeeeeeeecccCCCHHH---HH-HHHHhCCcEEEeeHHHHH
Confidence 33344567999988888766 4677776666677776666665322 22 235689988887766654
No 139
>PRK13331 pantothenate kinase; Reviewed
Probab=34.20 E-value=54 Score=25.53 Aligned_cols=26 Identities=15% Similarity=0.169 Sum_probs=21.8
Q ss_pred CCCCCCceEEEECCCccEEEeeeCCC
Q psy2724 1 MCDDDVAALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 1 ~~~~~~~~vViD~Gs~~~k~G~~g~~ 26 (174)
|.+..+..++||+|-.++++|+-.++
T Consensus 2 ~~~~~~~~L~iDiGNT~~~~g~f~~~ 27 (251)
T PRK13331 2 MFHTSNEWLALMIGNSRLHWGYFSGE 27 (251)
T ss_pred CCCCCCcEEEEEeCCCcEEEEEEECC
Confidence 45567788999999999999997654
No 140
>KOG1386|consensus
Probab=33.87 E-value=3.1e+02 Score=23.69 Aligned_cols=85 Identities=15% Similarity=0.174 Sum_probs=49.9
Q ss_pred HHHHHHHHHhhcccccc-CCCCCceEEeeCC---CCChHHHHHHHHHhhhhcCCC--------eeeeeh-------hhhH
Q psy2724 81 DDMEKIWHHTFYNELRV-APEEHPILLTEAP---LNPKANREKMTQIMFETFNTP--------AMYVAI-------QAVL 141 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~-~~~~~~vll~e~~---~~~~~~r~~l~e~lFE~~~~~--------sv~~~~-------~~~l 141 (174)
+.++.+++.+- ++... .-.+.||.+-... +.+...++++.+.+-..+... .+.++. ..++
T Consensus 65 ~~l~pLlefA~-~~IPk~~h~~Tpl~l~ATAGMRLL~~~~qeaIl~~l~~~l~~~s~f~f~~~~a~IIsG~~EGvYgWi~ 143 (501)
T KOG1386|consen 65 VYLTPLLEFAK-EHIPKEKHKETPLFLGATAGMRLLPLAQQEAILEVLRRVLKSLSDFLFDDEWARIISGKEEGVYGWIA 143 (501)
T ss_pred HHHHHHHHHHH-hhCCHhhcCCCCeEEEecccceecCcccHHHHHHHHHHhcccccCCcccccccEEeecccceehhhHH
Confidence 45677777765 33322 2357788777655 346777888888876655422 222221 1222
Q ss_pred HhhhcC-----------CCeEEEEecCCCceEEEee
Q psy2724 142 SLYASG-----------RTTGIVLDSGDGVSHTVPI 166 (174)
Q Consensus 142 a~~~~g-----------~~tglVVDiG~~~t~v~pV 166 (174)
+=|..| +.|-=.+|+|..+|+|+=+
T Consensus 144 ~NY~LG~f~~~~~~~~~~~T~G~lDlGGAS~QItFe 179 (501)
T KOG1386|consen 144 ANYLLGRFGKKNRWDSRKETFGALDLGGASTQITFE 179 (501)
T ss_pred HHHHHHhccccCcccCCcceeeeEecCCceeEEEEe
Confidence 223333 3455679999999999744
No 141
>PRK01712 carbon storage regulator; Provisional
Probab=32.84 E-value=52 Score=19.92 Aligned_cols=25 Identities=24% Similarity=0.469 Sum_probs=20.4
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRA 30 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~ 30 (174)
+|+....|+++....+|.|+- .|+.
T Consensus 15 gd~I~I~V~~i~~~~VrlGI~---AP~~ 39 (64)
T PRK01712 15 GDDIEVTVLGVKGNQVRIGIN---APKE 39 (64)
T ss_pred CCCEEEEEEEEeCCEEEEEEE---CCCC
Confidence 477888999999999999984 4653
No 142
>PF14401 RLAN: RimK-like ATPgrasp N-terminal domain
Probab=32.22 E-value=1.9e+02 Score=20.64 Aligned_cols=52 Identities=13% Similarity=0.356 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeee
Q psy2724 80 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMY 134 (174)
Q Consensus 80 ~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~ 134 (174)
++.+...+...+... .+.....+.+ ---.++.+..+++++-+||.|.+|-+.
T Consensus 66 ~~~l~~~l~~~l~~~--~~~~~~~l~i-yFG~~~~~~~~~lAr~lFe~F~~PlL~ 117 (153)
T PF14401_consen 66 LEELDPLLQKALAKL--IKSERFELSI-YFGQTPDPRLERLARQLFERFPCPLLE 117 (153)
T ss_pred HHHHhHHHHHHHhcc--cCCceEEEEE-EECCCCCHHHHHHHHHHHHhCCCceEE
Confidence 344556666666332 2222222222 223347777889999999999999553
No 143
>PRK03011 butyrate kinase; Provisional
Probab=32.11 E-value=38 Score=27.79 Aligned_cols=24 Identities=29% Similarity=0.416 Sum_probs=20.7
Q ss_pred CceEEEECCCccEEEeeeCCCCCC
Q psy2724 6 VAALVVDNGSGMCKAGFAGDDAPR 29 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~~P~ 29 (174)
.+.+||.+||.+||+++-.++.|.
T Consensus 2 ~~il~inpgststk~a~~~~~~~~ 25 (358)
T PRK03011 2 MRILVINPGSTSTKIAVFEDEKPI 25 (358)
T ss_pred CEEEEEcCCCchheEEEEcCCcee
Confidence 468999999999999999877665
No 144
>PRK13329 pantothenate kinase; Reviewed
Probab=31.60 E-value=46 Score=25.75 Aligned_cols=17 Identities=29% Similarity=0.329 Sum_probs=15.3
Q ss_pred eEEEECCCccEEEeeeC
Q psy2724 8 ALVVDNGSGMCKAGFAG 24 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g 24 (174)
.++||.|-..+|.++..
T Consensus 3 ~LliD~GNTriKw~~~~ 19 (249)
T PRK13329 3 FLAIDVGNTRLKWGLYD 19 (249)
T ss_pred EEEEEcCcchheeeEec
Confidence 58999999999998876
No 145
>PRK13333 pantothenate kinase; Reviewed
Probab=30.23 E-value=43 Score=25.28 Aligned_cols=27 Identities=22% Similarity=0.491 Sum_probs=18.2
Q ss_pred hHHhhhcCCCeEEEEecCCCceEEEeeeCC
Q psy2724 140 VLSLYASGRTTGIVLDSGDGVSHTVPIYED 169 (174)
Q Consensus 140 ~la~~~~g~~tglVVDiG~~~t~v~pV~dG 169 (174)
.+++++. ..++|||+|...|-= -+-+|
T Consensus 77 ~~a~~aa--~~~lVIDaGTAiTiD-vv~~g 103 (206)
T PRK13333 77 IAACYAI--EDGVVVDAGSAITVD-IMSNG 103 (206)
T ss_pred HHHhccC--CCeEEEEcCCceEEE-EEcCC
Confidence 4455554 579999999988743 34555
No 146
>KOG1264|consensus
Probab=28.61 E-value=91 Score=28.84 Aligned_cols=44 Identities=25% Similarity=0.352 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcC
Q psy2724 80 WDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFN 129 (174)
Q Consensus 80 ~~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~ 129 (174)
.|.+..|-+|+| -.+++||+++..-.++-++++.|++.+-|-||
T Consensus 380 ~DVlhtIkdhAF------vtSeyPVILSIEd~CSv~qQR~mAq~~keV~G 423 (1267)
T KOG1264|consen 380 DDVLHTIKDHAF------VTSEYPVILSIEDHCSVEQQRNMAQAFKEVFG 423 (1267)
T ss_pred HHHHHHHHhhce------eccCCcEEEEhhhcCChHHHHHHHHHHHHHHh
Confidence 456677777777 25899999999989998888899998877766
No 147
>PRK10331 L-fuculokinase; Provisional
Probab=26.90 E-value=64 Score=27.22 Aligned_cols=20 Identities=25% Similarity=0.250 Sum_probs=16.1
Q ss_pred ceEEEECCCccEEEeeeCCC
Q psy2724 7 AALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 7 ~~vViD~Gs~~~k~G~~g~~ 26 (174)
-.+.||+||.++|+..-..+
T Consensus 3 ~~lgID~GTt~~Ka~l~d~~ 22 (470)
T PRK10331 3 VILVLDCGATNVRAIAVDRQ 22 (470)
T ss_pred eEEEEecCCCceEEEEEcCC
Confidence 35779999999999877543
No 148
>PF06134 RhaA: L-rhamnose isomerase (RhaA); InterPro: IPR009308 This family consists of several bacterial L-rhamnose isomerase proteins (5.3.1.14 from EC). This enzyme interconverts L-rhamnose and L-rhamnulose. In some species, including Escherichia coli, this is the first step in rhamnose catabolism. Sequential steps are catalyzed by rhamnulose kinase (rhaB), then rhamnulose-1-phosphate aldolase (rhaD) to yield glycerone phosphate and (S)-lactaldehyde. ; GO: 0008740 L-rhamnose isomerase activity, 0030145 manganese ion binding, 0019299 rhamnose metabolic process; PDB: 1DE5_A 1D8W_D 1DE6_B 3P14_B 3UU0_B.
Probab=26.73 E-value=52 Score=27.39 Aligned_cols=30 Identities=27% Similarity=0.287 Sum_probs=20.9
Q ss_pred CeeeeehhhhHHhhhcCCCeEEEEecCCCc
Q psy2724 131 PAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (174)
Q Consensus 131 ~sv~~~~~~~la~~~~g~~tglVVDiG~~~ 160 (174)
.+...........|+.++...+++|.||-+
T Consensus 234 EsytVgSheFy~~YA~~~~~~~~lD~GHfh 263 (417)
T PF06134_consen 234 ESYTVGSHEFYMGYALGRNKMVCLDTGHFH 263 (417)
T ss_dssp SSEESS-HHHHHHHHHHCT-EEEEETTSSS
T ss_pred eeEecCchHHHHHHhhcCCcEEEEeCCCCC
Confidence 344444556667789999999999999953
No 149
>COG1880 CdhB CO dehydrogenase/acetyl-CoA synthase epsilon subunit [Energy production and conversion]
Probab=26.70 E-value=1.4e+02 Score=21.67 Aligned_cols=36 Identities=25% Similarity=0.359 Sum_probs=25.1
Q ss_pred CCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee
Q psy2724 100 EEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA 136 (174)
Q Consensus 100 ~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~ 136 (174)
..+|++++-|....++.+|.+..+. |+++.|.+.-.
T Consensus 35 AkrPLlivGp~~~dee~~E~~vKi~-ekfnipivaTa 70 (170)
T COG1880 35 AKRPLLIVGPLALDEELLELAVKII-EKFNIPIVATA 70 (170)
T ss_pred cCCceEEecccccCHHHHHHHHHHH-HhcCCceEecc
Confidence 3567888888777777777666544 78888876544
No 150
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=26.64 E-value=62 Score=27.69 Aligned_cols=21 Identities=29% Similarity=0.272 Sum_probs=18.1
Q ss_pred CceEEEECCCccEEEeeeCCC
Q psy2724 6 VAALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 6 ~~~vViD~Gs~~~k~G~~g~~ 26 (174)
.-.++||+||..+|+.....+
T Consensus 4 ~~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 4 KYVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred cEEEEEEcCCCcEEEEEEeCC
Confidence 567999999999999888665
No 151
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=26.62 E-value=3e+02 Score=21.18 Aligned_cols=78 Identities=15% Similarity=0.272 Sum_probs=42.2
Q ss_pred eccccCCeec--CHHHHHHHHHHhhccccc-------------------cCCCCCceEEeeCCCCCh-----HHHHHHHH
Q psy2724 69 KYPIEHGIIT--NWDDMEKIWHHTFYNELR-------------------VAPEEHPILLTEAPLNPK-----ANREKMTQ 122 (174)
Q Consensus 69 ~~p~~~g~i~--d~~~~~~l~~~~~~~~L~-------------------~~~~~~~vll~e~~~~~~-----~~r~~l~e 122 (174)
++|..+|..+ ||....+-++|.--..|. +-.++..-++.+.|++.. ....++.+
T Consensus 100 RfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lr 179 (252)
T COG4604 100 RFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILR 179 (252)
T ss_pred CCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEecCcccccchHHHHHHHHHHH
Confidence 5799999875 565555555544211110 011344444444444332 22234455
Q ss_pred HhhhhcCCC-eeeeehhhhHHhhhc
Q psy2724 123 IMFETFNTP-AMYVAIQAVLSLYAS 146 (174)
Q Consensus 123 ~lFE~~~~~-sv~~~~~~~la~~~~ 146 (174)
-+-++++-. -+.+..--.||+|+-
T Consensus 180 rla~el~KtiviVlHDINfAS~YsD 204 (252)
T COG4604 180 RLADELGKTIVVVLHDINFASCYSD 204 (252)
T ss_pred HHHHHhCCeEEEEEecccHHHhhhh
Confidence 566777755 445566777888886
No 152
>COG3732 SrlE Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism]
Probab=26.32 E-value=67 Score=25.34 Aligned_cols=33 Identities=24% Similarity=0.571 Sum_probs=24.5
Q ss_pred CCCCceEEEECCCccEEEeeeCCCCCCCCCCceeEEeC
Q psy2724 3 DDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 40 (174)
Q Consensus 3 ~~~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps~~~~~~ 40 (174)
.++.-++|||.|. +.|.|. .|+..+||+--.+.
T Consensus 61 e~ei~~vvidCgG-t~RcGv----YP~kripTini~~t 93 (328)
T COG3732 61 EEEIGCVVIDCGG-TLRCGV----YPKKRIPTINILPT 93 (328)
T ss_pred cceeEEEEEecCC-eeeecc----ccccCCceeeeccC
Confidence 4677889999985 678775 68888888755443
No 153
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=26.31 E-value=3.2e+02 Score=21.44 Aligned_cols=79 Identities=13% Similarity=0.073 Sum_probs=42.6
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCCc
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 160 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~~ 160 (174)
+..+++++.++ +++++...+..-+++.-. - |+ + .|....+.. +......+...-.....|+|+|.+-
T Consensus 42 ~~~~~~l~~~~-~~~g~~~~~i~~i~~TGY-G----R~-~---~~a~~~vtE---It~ha~GA~~~~p~~~tIiDIGGQD 108 (262)
T TIGR02261 42 KLAEDAYDDLL-EEAGLAAADVAYCATTGE-G----ES-L---AFHTGHFYS---MTTHARGAIYLNPEARAVLDIGALH 108 (262)
T ss_pred HHHHHHHHHHH-HHcCCChhheEEEEEECC-c----hh-h---hhhcCCeeE---EeHHHHHHHHHCCCCCEEEEeCCCc
Confidence 45777888887 566664443333333111 1 11 1 111112222 2222333333445778999999999
Q ss_pred eEEEee-eCCeec
Q psy2724 161 SHTVPI-YEDHEG 172 (174)
Q Consensus 161 t~v~pV-~dG~~~ 172 (174)
+-++-+ -+|.+.
T Consensus 109 ~K~I~~~~~G~v~ 121 (262)
T TIGR02261 109 GRAIRMDERGKVE 121 (262)
T ss_pred eEEEEEcCCCcEe
Confidence 999877 467664
No 154
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=26.17 E-value=63 Score=19.69 Aligned_cols=18 Identities=11% Similarity=0.516 Sum_probs=14.4
Q ss_pred CCeecCHHHHHHHHHHhh
Q psy2724 74 HGIITNWDDMEKIWHHTF 91 (174)
Q Consensus 74 ~g~i~d~~~~~~l~~~~~ 91 (174)
+|.-.+|+.+++++...+
T Consensus 25 ~~i~~~w~~LeeLL~cYL 42 (66)
T TIGR01568 25 RELEADWKELEELLACYL 42 (66)
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 465578999999997666
No 155
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=26.15 E-value=70 Score=26.98 Aligned_cols=19 Identities=26% Similarity=0.225 Sum_probs=16.0
Q ss_pred eEEEECCCccEEEeeeCCC
Q psy2724 8 ALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~ 26 (174)
.+.||+||.++|+.....+
T Consensus 3 ilgiD~GTss~K~~l~d~~ 21 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINRQ 21 (465)
T ss_pred EEEEecCCCcEEEEEEcCC
Confidence 5679999999999888643
No 156
>PF13941 MutL: MutL protein
Probab=25.12 E-value=54 Score=27.92 Aligned_cols=22 Identities=45% Similarity=0.590 Sum_probs=17.6
Q ss_pred eEEEECCCccEEEeeeC--CCCCC
Q psy2724 8 ALVVDNGSGMCKAGFAG--DDAPR 29 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g--~~~P~ 29 (174)
.+++|+||-+||+-.-. +..++
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~ 25 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPR 25 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccE
Confidence 68999999999997766 44554
No 157
>TIGR00749 glk glucokinase, proteobacterial type. This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.
Probab=24.96 E-value=49 Score=26.30 Aligned_cols=24 Identities=8% Similarity=0.018 Sum_probs=19.5
Q ss_pred HhhhhcCCCeeeeehhhhHHhhhc
Q psy2724 123 IMFETFNTPAMYVAIQAVLSLYAS 146 (174)
Q Consensus 123 ~lFE~~~~~sv~~~~~~~la~~~~ 146 (174)
.+-+.++.|.+.+.++.-+++|+.
T Consensus 84 ~l~~~~g~~~V~l~ND~naaa~ge 107 (316)
T TIGR00749 84 ELKQNLGFSHLEIINDFTAVSYAI 107 (316)
T ss_pred HHHHhcCCCeEEEEecHHHHHcCC
Confidence 334468888899999999999984
No 158
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=24.79 E-value=2.1e+02 Score=21.32 Aligned_cols=38 Identities=8% Similarity=0.106 Sum_probs=29.8
Q ss_pred CCCCCceEEeeCCCCChHHHHHHHHHhhhhcCCCeeeee
Q psy2724 98 APEEHPILLTEAPLNPKANREKMTQIMFETFNTPAMYVA 136 (174)
Q Consensus 98 ~~~~~~vll~e~~~~~~~~r~~l~e~lFE~~~~~sv~~~ 136 (174)
+..++.++++++...+=..-....+.|.+ .|++++.++
T Consensus 119 ~i~~~~VllvDd~laTG~Tl~~ai~~L~~-~G~~~I~v~ 156 (207)
T TIGR01091 119 DIDERTVIVLDPMLATGGTMIAALDLLKK-RGAKKIKVL 156 (207)
T ss_pred CCCCCEEEEECCCccchHHHHHHHHHHHH-cCCCEEEEE
Confidence 34567899999999998888888888765 688877654
No 159
>PRK12408 glucokinase; Provisional
Probab=24.39 E-value=53 Score=26.50 Aligned_cols=47 Identities=17% Similarity=0.248 Sum_probs=30.6
Q ss_pred HHhhhhcCCCeeeeehhhhHHhhhc------------C----C-CeEEEEecCCCceEEEeeeCC
Q psy2724 122 QIMFETFNTPAMYVAIQAVLSLYAS------------G----R-TTGIVLDSGDGVSHTVPIYED 169 (174)
Q Consensus 122 e~lFE~~~~~sv~~~~~~~la~~~~------------g----~-~tglVVDiG~~~t~v~pV~dG 169 (174)
+.|=+.+++|.+++.++.-+++|+. | . .+.++|-+|.+.= ...|++|
T Consensus 102 ~~l~~~~~~~~V~l~ND~naaa~gE~~~~~~~~~~~~g~~~~~~~~~~~i~~GTGiG-ggivi~g 165 (336)
T PRK12408 102 EQIRAQLGLQAVHLVNDFEAVAYAAPYMEGNQVLQLSGPAQAAAGPALVLGPGTGLG-AALWIPN 165 (336)
T ss_pred HHHHHHcCCCeEEEeecHHHHHcccccCCHhHeeeecCCCCCCCCcEEEEECCCcce-EEEEEcC
Confidence 4444568888899999999998864 1 1 3567777775542 3334444
No 160
>cd00408 DHDPS-like Dihydrodipicolinate synthase family. A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.
Probab=24.34 E-value=1.1e+02 Score=23.76 Aligned_cols=23 Identities=9% Similarity=0.118 Sum_probs=15.3
Q ss_pred ccccCCeecCHHHHHHHHHHhhc
Q psy2724 70 YPIEHGIITNWDDMEKIWHHTFY 92 (174)
Q Consensus 70 ~p~~~g~i~d~~~~~~l~~~~~~ 92 (174)
-|+....-.||+.++++++++..
T Consensus 7 TPf~~dg~iD~~~~~~~i~~l~~ 29 (281)
T cd00408 7 TPFTADGEVDLDALRRLVEFLIE 29 (281)
T ss_pred CCcCCCCCcCHHHHHHHHHHHHH
Confidence 45544334588888888887774
No 161
>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis. The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.
Probab=24.31 E-value=3.3e+02 Score=20.85 Aligned_cols=83 Identities=12% Similarity=0.228 Sum_probs=43.6
Q ss_pred HHHHHHHHhhccccccCCCCCceE-EeeCCCCChHHHHHHH-HHhhhhcCCCeeeeehhhhHHhhhcCCCeEEEEecCCC
Q psy2724 82 DMEKIWHHTFYNELRVAPEEHPIL-LTEAPLNPKANREKMT-QIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 159 (174)
Q Consensus 82 ~~~~l~~~~~~~~L~~~~~~~~vl-l~e~~~~~~~~r~~l~-e~lFE~~~~~sv~~~~~~~la~~~~g~~tglVVDiG~~ 159 (174)
.+++.++.++ +.++.++.+...+ +.-.-.......+++. +++.+ .+.+...+..++++.....|+ |.++..
T Consensus 43 ~i~~~i~~~~-~~~~~~~~~i~~~~~g~aG~~~~~~~~~~~~~~~~~-----~v~~~~Da~~al~~~~~~~gi-v~I~GT 115 (271)
T PF01869_consen 43 NIKEAIEEAL-SQAGLSPDDIAAICIGAAGYGRAGDEQEFQEEIVRS-----EVIVVNDAAIALYGATAEDGI-VVIAGT 115 (271)
T ss_dssp HHHHHHHHHH-HHHTTSTTCCCEEEEEEEEEEETTTTTHHHHHHHHH-----EEEEEEHHHHHHHHHSTSSEE-EEEESS
T ss_pred HHHHHHHHHH-HHcCCCccccceeeeeEeeecCcccccchhhcceEE-----EEEEEHHHHHHhCCCCCCcEE-EEEcCC
Confidence 4556666666 5666665554433 2222221111111122 22222 889999999888876554454 455555
Q ss_pred ceEEEeee-CCee
Q psy2724 160 VSHTVPIY-EDHE 171 (174)
Q Consensus 160 ~t~v~pV~-dG~~ 171 (174)
.+.+.-+- +|..
T Consensus 116 GS~~~~~~~~g~~ 128 (271)
T PF01869_consen 116 GSIAYGRDRDGRV 128 (271)
T ss_dssp SEEEEEEETTSEE
T ss_pred CceEEEEEcCCcE
Confidence 55565565 6654
No 162
>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2.7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.
Probab=24.16 E-value=1.1e+02 Score=24.52 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=18.2
Q ss_pred hhhhcCCCeeeeehhhhHHhhhc
Q psy2724 124 MFETFNTPAMYVAIQAVLSLYAS 146 (174)
Q Consensus 124 lFE~~~~~sv~~~~~~~la~~~~ 146 (174)
+-..++++.+.++++-.+.+|+.
T Consensus 86 l~~~lg~~~v~liNDfeA~a~gl 108 (316)
T PF02685_consen 86 LAQRLGIPRVRLINDFEAQAYGL 108 (316)
T ss_dssp CHCCCT-TCEEEEEHHHHHHHHH
T ss_pred HHHHhCCceEEEEcccchheecc
Confidence 33578999999999999999874
No 163
>PRK00976 hypothetical protein; Provisional
Probab=23.95 E-value=1.5e+02 Score=24.09 Aligned_cols=32 Identities=16% Similarity=-0.036 Sum_probs=25.6
Q ss_pred hHHhhhcCCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 140 VLSLYASGRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 140 ~la~~~~g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
.++.+-++..+-+++|+|+ .|-..-|-+|.+.
T Consensus 140 ~~a~~~~~~~~fi~~diss-ntv~~~V~~gkIv 171 (326)
T PRK00976 140 YNAYKLFGFENFIVSDISS-NTVTLLVKDGKIV 171 (326)
T ss_pred HHHHhhcCCCcEEEEeccc-cEEEEEEECCEEE
Confidence 3344457889999999999 8888889999864
No 164
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=23.43 E-value=75 Score=28.13 Aligned_cols=24 Identities=8% Similarity=-0.025 Sum_probs=20.4
Q ss_pred HHhhhhcCCCeeeeehhhhHHhhh
Q psy2724 122 QIMFETFNTPAMYVAIQAVLSLYA 145 (174)
Q Consensus 122 e~lFE~~~~~sv~~~~~~~la~~~ 145 (174)
+.+-+.|++|.+.+.++.-+++|+
T Consensus 99 ~~l~~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 99 EATRRALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHHHHHcCCCeEEEEchHHHHHcC
Confidence 455567899989999999999998
No 165
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid). It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.
Probab=23.21 E-value=1.4e+02 Score=23.42 Aligned_cols=54 Identities=19% Similarity=0.167 Sum_probs=31.3
Q ss_pred eccccCCeecCHHHHHHHHHHhhccccccCCCCCceEEe----eCCCCChHHHHHHHHHhhhh
Q psy2724 69 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLT----EAPLNPKANREKMTQIMFET 127 (174)
Q Consensus 69 ~~p~~~g~i~d~~~~~~l~~~~~~~~L~~~~~~~~vll~----e~~~~~~~~r~~l~e~lFE~ 127 (174)
.-|+...--.|++.++++++++.. .++++ .+++. |-...+.++|+++.+..-|.
T Consensus 9 ~TPf~~dg~iD~~~~~~~i~~l~~-~~Gv~----gi~~~GstGE~~~Lt~~Er~~~~~~~~~~ 66 (288)
T cd00954 9 LTPFDENGEINEDVLRAIVDYLIE-KQGVD----GLYVNGSTGEGFLLSVEERKQIAEIVAEA 66 (288)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHh-cCCCC----EEEECcCCcCcccCCHHHHHHHHHHHHHH
Confidence 346654334688999999988884 22332 12222 33445666666676666654
No 166
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=22.93 E-value=87 Score=26.73 Aligned_cols=19 Identities=11% Similarity=0.095 Sum_probs=15.7
Q ss_pred eEEEECCCccEEEeeeCCC
Q psy2724 8 ALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~ 26 (174)
.+.||+||.++|+..-..+
T Consensus 4 ~lgiDiGTts~Ka~l~d~~ 22 (504)
T PTZ00294 4 IGSIDQGTTSTRFIIFDEK 22 (504)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 5679999999999887643
No 167
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=22.46 E-value=5.1e+02 Score=22.35 Aligned_cols=86 Identities=15% Similarity=0.262 Sum_probs=45.3
Q ss_pred HHHHHHHHHhhccccccCCCCCceEEeeCCCCC--hHHHHHHHHHhhhh------cCCCeeeeehhhhHHhhhc------
Q psy2724 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLNP--KANREKMTQIMFET------FNTPAMYVAIQAVLSLYAS------ 146 (174)
Q Consensus 81 ~~~~~l~~~~~~~~L~~~~~~~~vll~e~~~~~--~~~r~~l~e~lFE~------~~~~sv~~~~~~~la~~~~------ 146 (174)
+.+++.|+..+ +.+..+....++.+.-+...+ -..-+.+++.+-+- -+.|-+.++.+-.+=+.+.
T Consensus 353 ~~l~~~i~~~l-~~~~~~~~~~~~Alal~g~~~~~f~~iq~lA~~i~~~~~~~~~~~~Plivv~e~D~aKvLGq~l~~~l 431 (473)
T PF06277_consen 353 EELAEAIREAL-EWFDLEGEDQPVALALPGKPNPSFAEIQELAEAIAEGMAELINPDQPLIVVVEQDMAKVLGQTLQALL 431 (473)
T ss_pred HHHHHHHHHHH-HhhcccCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhhccCCCCEEEEECchHHHHHHHHHHHhc
Confidence 45556666665 345555555666666554433 33333455544332 2345666666655544332
Q ss_pred C------------CCeEEEEecCCCc--eEEEeee
Q psy2724 147 G------------RTTGIVLDSGDGV--SHTVPIY 167 (174)
Q Consensus 147 g------------~~tglVVDiG~~~--t~v~pV~ 167 (174)
+ ..+|=-||+|.-. ..|+||+
T Consensus 432 ~~~~~licID~I~v~~GDYIDIG~Pl~~G~VvPVv 466 (473)
T PF06277_consen 432 PKKRPLICIDQIKVENGDYIDIGKPLAGGSVVPVV 466 (473)
T ss_pred CCCCCEEEEeeEEcCCCCeEecCCccCCCCEeeEE
Confidence 1 2455567888754 3677774
No 168
>PRK03170 dihydrodipicolinate synthase; Provisional
Probab=22.28 E-value=1.4e+02 Score=23.46 Aligned_cols=24 Identities=8% Similarity=0.112 Sum_probs=17.0
Q ss_pred eccccCCeecCHHHHHHHHHHhhc
Q psy2724 69 KYPIEHGIITNWDDMEKIWHHTFY 92 (174)
Q Consensus 69 ~~p~~~g~i~d~~~~~~l~~~~~~ 92 (174)
.-|+...--.||+.++++++++..
T Consensus 10 ~TPf~~dg~iD~~~l~~~i~~l~~ 33 (292)
T PRK03170 10 VTPFKEDGSVDFAALRKLVDYLIA 33 (292)
T ss_pred eCCcCCCCCcCHHHHHHHHHHHHH
Confidence 346654444688888888888874
No 169
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=22.25 E-value=2.5e+02 Score=22.27 Aligned_cols=25 Identities=12% Similarity=0.279 Sum_probs=20.0
Q ss_pred eeccccC-CeecCHHHHHHHHHHhhcc
Q psy2724 68 LKYPIEH-GIITNWDDMEKIWHHTFYN 93 (174)
Q Consensus 68 ~~~p~~~-g~i~d~~~~~~l~~~~~~~ 93 (174)
+.-|++. |. .|+++++++.++...+
T Consensus 12 ~vTPF~~dg~-vD~~a~~~lv~~li~~ 37 (299)
T COG0329 12 LVTPFDEDGS-VDEEALRRLVEFLIAA 37 (299)
T ss_pred cccCCCCCCC-cCHHHHHHHHHHHHHc
Confidence 4567875 76 7999999999999854
No 170
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=22.16 E-value=93 Score=26.44 Aligned_cols=19 Identities=26% Similarity=0.373 Sum_probs=15.8
Q ss_pred eEEEECCCccEEEeeeCCC
Q psy2724 8 ALVVDNGSGMCKAGFAGDD 26 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~~ 26 (174)
.+.||+|+.++|++...++
T Consensus 3 ~lgiDiGtt~iKa~l~d~~ 21 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDKD 21 (493)
T ss_pred EEEEecCCCceEEEEECCC
Confidence 4679999999999988643
No 171
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=21.89 E-value=35 Score=24.14 Aligned_cols=30 Identities=23% Similarity=0.246 Sum_probs=20.7
Q ss_pred CCceEEEECCCccEEEeeeCCCCCCCCCCc
Q psy2724 5 DVAALVVDNGSGMCKAGFAGDDAPRAVFPS 34 (174)
Q Consensus 5 ~~~~vViD~Gs~~~k~G~~g~~~P~~~~ps 34 (174)
..-++|.|+|+..+=+-.+.+-.|.-..||
T Consensus 70 ~~~~~VyDnG~~~vVi~v~~~i~~~~leaT 99 (145)
T PF10726_consen 70 VRYPIVYDNGADQVVIAVPPDITPEALEAT 99 (145)
T ss_pred eEeeEEEECCCcEEEEEcCCCCCHHHHHHH
Confidence 345799999999998866655444444443
No 172
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=21.71 E-value=2.9e+02 Score=19.35 Aligned_cols=53 Identities=17% Similarity=0.138 Sum_probs=36.7
Q ss_pred HHHHHHhhhhcCCCeeeeehhhhHHhhhc-------CCCeEEEEecCCCceEEEeeeCCeec
Q psy2724 118 EKMTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEDHEG 172 (174)
Q Consensus 118 ~~l~e~lFE~~~~~sv~~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~~ 172 (174)
..+.+.|=+.|++| +.+.+..-+++++. +..+.+.+.+|.+. -..-+++|.+.
T Consensus 81 ~~l~~~l~~~~~~p-v~i~Nd~~~~a~ae~~~~~~~~~~~~~~l~ig~Gi-G~~ii~~g~i~ 140 (179)
T PF00480_consen 81 IPLKEELEERFGVP-VIIENDANAAALAEYWFGAAKDCDNFLYLYIGTGI-GAGIIINGKIY 140 (179)
T ss_dssp CEHHHHHHHHHTSE-EEEEEHHHHHHHHHHHHSTTTTTSSEEEEEESSSE-EEEEEETTEEE
T ss_pred CCHHHHhhcccceE-EEEecCCCcceeehhhcCccCCcceEEEEEeecCC-Ccceecccccc
Confidence 33556666677876 67888888776543 35788999998864 45557788764
No 173
>PRK13322 pantothenate kinase; Reviewed
Probab=21.33 E-value=87 Score=24.15 Aligned_cols=18 Identities=22% Similarity=0.204 Sum_probs=15.8
Q ss_pred eEEEECCCccEEEeeeCC
Q psy2724 8 ALVVDNGSGMCKAGFAGD 25 (174)
Q Consensus 8 ~vViD~Gs~~~k~G~~g~ 25 (174)
.++||+|-.++|.|+..+
T Consensus 2 ~L~IDiGNT~iK~~l~~~ 19 (246)
T PRK13322 2 ILELDCGNSRLKWRVIDN 19 (246)
T ss_pred EEEEEeCCCcEEEEEEcC
Confidence 379999999999999864
No 174
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=21.12 E-value=72 Score=23.94 Aligned_cols=21 Identities=14% Similarity=0.188 Sum_probs=17.2
Q ss_pred CCCceEEEECCCccEEEeeeC
Q psy2724 4 DDVAALVVDNGSGMCKAGFAG 24 (174)
Q Consensus 4 ~~~~~vViD~Gs~~~k~G~~g 24 (174)
+....++||+|+.++|+.+..
T Consensus 61 E~G~~LalDlGGTnlRv~~V~ 81 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVE 81 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEE
T ss_pred CCceEEEEeecCcEEEEEEEE
Confidence 344679999999999998773
No 175
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=21.06 E-value=4.1e+02 Score=20.78 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=31.5
Q ss_pred HHHHhhhhcCCCeeeeehhhhHHhhhc-------CCCeEEEEecCCCceEEEeeeCCee
Q psy2724 120 MTQIMFETFNTPAMYVAIQAVLSLYAS-------GRTTGIVLDSGDGVSHTVPIYEDHE 171 (174)
Q Consensus 120 l~e~lFE~~~~~sv~~~~~~~la~~~~-------g~~tglVVDiG~~~t~v~pV~dG~~ 171 (174)
+.+.|=+.+++| +.+-+++-++++|- +..+-+.+.+|.+.= .--|++|.+
T Consensus 98 l~~~L~~~~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGIG-~giv~~g~l 154 (314)
T COG1940 98 LAEELEARLGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTGIG-GGIIVNGKL 154 (314)
T ss_pred HHHHHHHHHCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEcccee-EEEEECCEE
Confidence 444555667777 67888888887643 245677777776653 333556554
Done!