RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2724
(174 letters)
>gnl|CDD|173506 PTZ00281, PTZ00281, actin; Provisional.
Length = 376
Score = 352 bits (903), Expect = e-123
Identities = 159/170 (93%), Positives = 165/170 (97%)
Query: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
M +DV ALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH GVMVGMGQKDSYVGDEAQ
Sbjct: 1 MDGEDVQALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDSYVGDEAQ 60
Query: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKM 120
SKRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKM
Sbjct: 61 SKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDH 170
TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIV+DSGDGVSHTVPIYE +
Sbjct: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGY 170
>gnl|CDD|240225 PTZ00004, PTZ00004, actin-2; Provisional.
Length = 378
Score = 320 bits (823), Expect = e-111
Identities = 147/168 (87%), Positives = 155/168 (92%)
Query: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQ 60
M ++ A VVDNGSGM KAGFAGDDAPR VFPSIVGRP++ G+MVGM +KD YVGDEAQ
Sbjct: 1 MSVEETNAAVVDNGSGMVKAGFAGDDAPRCVFPSIVGRPKNPGIMVGMEEKDCYVGDEAQ 60
Query: 61 SKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKM 120
KRGILTLKYPIEHGI+TNWDDMEKIWHHTFYNELRVAPEEHP+LLTEAPLNPKANREKM
Sbjct: 61 DKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKM 120
Query: 121 TQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
TQIMFET N PAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE
Sbjct: 121 TQIMFETHNVPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
>gnl|CDD|214592 smart00268, ACTIN, Actin. ACTIN subfamily of
ACTIN/mreB/sugarkinase/Hsp70 superfamily.
Length = 373
Score = 297 bits (762), Expect = e-102
Identities = 117/163 (71%), Positives = 139/163 (85%), Gaps = 1/163 (0%)
Query: 6 VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
V A+V+DNGSG KAGFAG+D P+ VFPSIVGRP+ MVG KD +VGDEAQ KRG
Sbjct: 1 VPAIVIDNGSGTIKAGFAGEDFPQVVFPSIVGRPKDGKGMVG-DAKDIFVGDEAQEKRGG 59
Query: 66 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMF 125
L LKYPIE+GI+ NWDDMEKIW +TF+NELRV PEEHP+LLTE P+NPK+NREK+ +IMF
Sbjct: 60 LELKYPIENGIVENWDDMEKIWDYTFFNELRVEPEEHPVLLTEPPMNPKSNREKILEIMF 119
Query: 126 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
ETFN PA+Y+AIQAVLSLYASGRTTG+V+DSGDGV+H VP+ +
Sbjct: 120 ETFNFPALYIAIQAVLSLYASGRTTGLVIDSGDGVTHVVPVVD 162
>gnl|CDD|200935 pfam00022, Actin, Actin.
Length = 367
Score = 294 bits (756), Expect = e-101
Identities = 116/165 (70%), Positives = 134/165 (81%), Gaps = 5/165 (3%)
Query: 4 DDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKR 63
D+V+ALV+DNGSG KAGFAG+DAPRAV PS+VGRPR +GVMV YVGDEA SKR
Sbjct: 1 DEVSALVIDNGSGTTKAGFAGEDAPRAVIPSVVGRPRGRGVMV-----KYYVGDEALSKR 55
Query: 64 GILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQI 123
L ++YPIE GI+ NWD MEKIW HTF+ ELRV PEEHP+LLTE PLNP ANREK T+I
Sbjct: 56 PGLEVRYPIEDGIVENWDAMEKIWEHTFFEELRVDPEEHPLLLTEPPLNPPANREKATEI 115
Query: 124 MFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
MFETF PA+Y+A QAVLS YASGRTTG+V+DSG GV+ VP+YE
Sbjct: 116 MFETFGVPALYLAKQAVLSAYASGRTTGLVVDSGAGVTSVVPVYE 160
>gnl|CDD|240426 PTZ00466, PTZ00466, actin-like protein; Provisional.
Length = 380
Score = 235 bits (602), Expect = 8e-78
Identities = 91/160 (56%), Positives = 124/160 (77%), Gaps = 1/160 (0%)
Query: 9 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILTL 68
+++DNG+G KAGFAG+D P VFPS VGRP+++ VM G + + +VG++A+ RG+L +
Sbjct: 15 IIIDNGTGYIKAGFAGEDVPNLVFPSYVGRPKYKRVMAGAVEGNIFVGNKAEEYRGLLKV 74
Query: 69 KYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFETF 128
YPI HGII NW+DME IW H YN +++ EEHP+LLTEAPLNP+ N+EK+ ++ FETF
Sbjct: 75 TYPINHGIIENWNDMENIWIHV-YNSMKINSEEHPVLLTEAPLNPQKNKEKIAEVFFETF 133
Query: 129 NTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYE 168
N PA++++IQA+LSLY+ G+T G VLD GDGV H V IYE
Sbjct: 134 NVPALFISIQAILSLYSCGKTNGTVLDCGDGVCHCVSIYE 173
>gnl|CDD|227602 COG5277, COG5277, Actin and related proteins [Cytoskeleton].
Length = 444
Score = 237 bits (606), Expect = 2e-77
Identities = 104/175 (59%), Positives = 134/175 (76%), Gaps = 7/175 (4%)
Query: 1 MCDDDVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR-HQGVMVGMGQKDSYVGDEA 59
M D+V +V+DNGSG KAGFAG+D P VFPSIVGR R VM +KD+YVG+EA
Sbjct: 1 MTGDNVPTIVIDNGSGTTKAGFAGNDTPTTVFPSIVGRRRDEDSVMEDTEEKDTYVGNEA 60
Query: 60 QSKRGI--LTLKYPIEHGIITNWDDMEKIWHHTFYNE--LRVAPEEHPILLTEAPLNPKA 115
Q+ R L L+YPIE+GII NWD ME+IW +TF+N+ L +PEEHP+LLTE PLNP +
Sbjct: 61 QNDRDNSLLELRYPIENGIILNWDAMEQIWDYTFFNKGDLLPSPEEHPLLLTEPPLNPPS 120
Query: 116 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--TGIVLDSGDGVSHTVPIYE 168
NREK+T+++FET N PA+Y+AIQAVLSLYASG + TG+V+DSGD V+H +P+ +
Sbjct: 121 NREKITELLFETLNVPALYLAIQAVLSLYASGSSDETGLVIDSGDSVTHVIPVVD 175
>gnl|CDD|185631 PTZ00452, PTZ00452, actin; Provisional.
Length = 375
Score = 232 bits (593), Expect = 2e-76
Identities = 97/164 (59%), Positives = 132/164 (80%)
Query: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
A+V+DNGSG CK G AGDDAP + FP+IVGR + + K+ YVG+EAQ+KRG+L
Sbjct: 7 AVVIDNGSGYCKIGIAGDDAPTSCFPAIVGRSKQNDGIFSTFNKEYYVGEEAQAKRGVLA 66
Query: 68 LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET 127
+K PI++GII +WDD+E IWHH FYNEL ++PE+ P+ +T+AP+N K NRE+MTQIMFET
Sbjct: 67 IKEPIQNGIINSWDDIEIIWHHAFYNELCMSPEDQPVFMTDAPMNSKFNRERMTQIMFET 126
Query: 128 FNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEDHE 171
FNTP +Y++ +AVLSLY SG+T G+V+DSG+GV+H VP++E H+
Sbjct: 127 FNTPCLYISNEAVLSLYTSGKTIGLVVDSGEGVTHCVPVFEGHQ 170
>gnl|CDD|240343 PTZ00280, PTZ00280, Actin-related protein 3; Provisional.
Length = 414
Score = 195 bits (497), Expect = 1e-61
Identities = 75/174 (43%), Positives = 103/174 (59%), Gaps = 13/174 (7%)
Query: 8 ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMV---GMGQKDSYVGDEAQSKRG 64
+V+DNG+G K G+AG+ P + P+++ Q G D Y+GDEA +
Sbjct: 6 VVVIDNGTGYTKMGYAGNTEPTYIIPTLIADNSKQSRRRSKKGFEDLDFYIGDEALAASK 65
Query: 65 ILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIM 124
TL YP++HGI+ +WD MEK W + LR PEEH +LTE P+NP NRE +IM
Sbjct: 66 SYTLTYPMKHGIVEDWDLMEKFWEQCIFKYLRCEPEEHYFILTEPPMNPPENREYTAEIM 125
Query: 125 FETFNTPAMYVAIQAVLSLYAS----------GRTTGIVLDSGDGVSHTVPIYE 168
FETFN +Y+A+QAVL+L AS G TG V+DSGDGV+H +P+ +
Sbjct: 126 FETFNVKGLYIAVQAVLALRASWTSKKAKELGGTLTGTVIDSGDGVTHVIPVVD 179
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 74.2 bits (182), Expect = 6e-17
Identities = 41/182 (22%), Positives = 59/182 (32%), Gaps = 53/182 (29%)
Query: 9 LVVDNGSGMCKAGFAGDDA---PRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGI 65
L +D GS KAG A D P + P+ VGRP
Sbjct: 1 LGIDIGSTSTKAGVADLDGEILPEEIVPTPVGRP-------------------------- 34
Query: 66 LTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEE-HPILLTEAPLNPKANREKMTQI- 123
G +T+ D++E+ LR E + +TE PK NRE +
Sbjct: 35 ---------GAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPN 85
Query: 124 --------MFETFNTPAMYVAIQAVLSLYASGRT-----TGIVLDSGDGVSHTVPIYEDH 170
E + V AV + A G T +V+D G G + + +
Sbjct: 86 LLLIPLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVVDLGTGTTGIAIVEDGK 145
Query: 171 EG 172
G
Sbjct: 146 GG 147
>gnl|CDD|130700 TIGR01639, P_fal_TIGR01639, Plasmodium falciparum uncharacterized
domain TIGR01639. This model represents a conserved
sequence region of about 60 amino acids found in over
40 predicted proteins of Plasmodium falciparum. It is
not found elsewhere, including closely related species
such as Plasmodium yoelii. No member of this family is
characterized.
Length = 61
Score = 27.2 bits (61), Expect = 1.0
Identities = 7/18 (38%), Positives = 9/18 (50%)
Query: 77 ITNWDDMEKIWHHTFYNE 94
I N +DM IW+ E
Sbjct: 25 IPNRNDMLIIWNQVHGIE 42
>gnl|CDD|216635 pfam01663, Phosphodiest, Type I phosphodiesterase / nucleotide
pyrophosphatase. This family consists of
phosphodiesterases, including human plasma-cell membrane
glycoprotein PC-1 / alkaline phosphodiesterase i /
nucleotide pyrophosphatase (nppase). These enzymes
catalyze the cleavage of phosphodiester and
phosphosulfate bonds in NAD, deoxynucleotides and
nucleotide sugars. Also in this family is ATX an
autotaxin, tumour cell motility-stimulating protein
which exhibits type I phosphodiesterases activity. The
alignment encompasses the active site. Also present with
in this family is 60-kDa Ca2+-ATPase form F. odoratum.
Length = 342
Score = 28.9 bits (65), Expect = 1.5
Identities = 20/79 (25%), Positives = 32/79 (40%), Gaps = 13/79 (16%)
Query: 65 ILTLKYPIEHGIITN-WDDMEKIWHHTFYNELRVAP--EEHPILLTEAPLNPKANREKMT 121
I+T YP HGI+ N W D +++ TF+++L + + PI +T KA
Sbjct: 52 IVTGLYPGSHGIVGNTWYDPKRLKESTFWDQLPESGDGDPKPIWVTAKKQGLKAA----- 106
Query: 122 QIMFETFNTPAMYVAIQAV 140
P + A
Sbjct: 107 -----ALFWPGSHAAKPGY 120
>gnl|CDD|177818 PLN02159, PLN02159, Fe(2+) transport protein.
Length = 337
Score = 28.4 bits (63), Expect = 1.9
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 142 SLYASGRTTGIVLDSGDGVSHTVPIYEDHEG 172
SLY S + G + D G H V + +G
Sbjct: 144 SLYTSKNSVGPMPDHGHSHGHGVVLKTKDDG 174
>gnl|CDD|224857 COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].
Length = 289
Score = 27.7 bits (62), Expect = 3.0
Identities = 12/82 (14%), Positives = 20/82 (24%), Gaps = 13/82 (15%)
Query: 70 YPIEHGII-TNWDDMEKIWHHTF----YNELRVAPEEHPILLTEAPLNPKANREKMTQIM 124
P E I + +I F E+R +P ++ Q+
Sbjct: 130 LPSETQIAQKLLPHLPEIVRAKFELERPIEIRPVNLTNPFSGDKS--------SPQQQVW 181
Query: 125 FETFNTPAMYVAIQAVLSLYAS 146
+ L Y S
Sbjct: 182 IRARGELPDDPRLHQALLAYLS 203
>gnl|CDD|220620 pfam10183, ESSS, ESSS subunit of NADH:ubiquinone oxidoreductase
(complex I). This subunit is part of the mitochondrial
NADH:ubiquinone oxidoreductase (complex I). It carries
mitochondrial import sequences.
Length = 101
Score = 26.7 bits (59), Expect = 3.5
Identities = 9/29 (31%), Positives = 13/29 (44%)
Query: 64 GILTLKYPIEHGIITNWDDMEKIWHHTFY 92
G L K P G W+D E ++ F+
Sbjct: 39 GRLFNKNPPPPGEKRKWEDWELPFYFGFF 67
>gnl|CDD|224441 COG1524, COG1524, Uncharacterized proteins of the AP superfamily
[General function prediction only].
Length = 450
Score = 27.5 bits (61), Expect = 3.8
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 64 GILTLKYPIEHGIITN--WDDMEKIWHHTFYNELRVAP 99
++T YP EHGI+ N +D F +
Sbjct: 91 TLITGSYPDEHGIVGNILYDPETGDSVLQFLLDNPTIL 128
>gnl|CDD|131964 TIGR02918, TIGR02918, accessory Sec system glycosylation protein
GtfA. Members of this protein family are found only in
Gram-positive bacteria of the Firmicutes lineage,
including several species of Staphylococcus,
Streptococcus, and Lactobacillus. Members are associated
with glycosylation of serine-rich glycoproteins exported
by the accessory Sec system [Protein fate, Protein
modification and repair].
Length = 500
Score = 27.4 bits (61), Expect = 5.0
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 81 DDMEKIWHHTFYNELRVAPEEHPILLTEAPLN-PKANREKMTQIMFETFNTPAMYVA 136
D E IW + ++ ++++AP + + E L REK +I FN +++V
Sbjct: 58 KDDEIIWLYQYFTDIKIAPTTYTVDDLEKELGLEITRREKNGKIKKLFFNNDSIFVT 114
>gnl|CDD|221044 pfam11249, DUF3047, Protein of unknown function (DUF3047). This
bacterial family of proteins has no known function.
Length = 180
Score = 26.1 bits (58), Expect = 8.1
Identities = 10/49 (20%), Positives = 17/49 (34%), Gaps = 10/49 (20%)
Query: 133 MYV-----AIQAVLSLYASGRTTGIVLDSGDG-----VSHTVPIYEDHE 171
YV + V + R IV+ SG V+ + + D+
Sbjct: 97 NYVWSSSLPVGTVWPNPYTDRVKMIVVRSGPAGLGEWVTESRNLRADYR 145
>gnl|CDD|223224 COG0146, HyuB, N-methylhydantoinase B/acetone carboxylase, alpha
subunit [Amino acid transport and metabolism / Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 563
Score = 26.8 bits (60), Expect = 8.1
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 9/53 (16%)
Query: 123 IMFETFNTPAMYVAIQAVLSLYASGRTTGI--VLDSGDGVSHTVPIYEDHEGE 173
I E FN M +A + ++L + + I LD + I+ D EG
Sbjct: 5 ITLEVFNNAFMAIAEEMGVTLQRTAFSPNIKERLD------FSCAIF-DAEGN 50
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.136 0.413
Gapped
Lambda K H
0.267 0.0756 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,043,062
Number of extensions: 831953
Number of successful extensions: 692
Number of sequences better than 10.0: 1
Number of HSP's gapped: 680
Number of HSP's successfully gapped: 25
Length of query: 174
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 84
Effective length of database: 6,945,742
Effective search space: 583442328
Effective search space used: 583442328
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.3 bits)