RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2724
         (174 letters)



>d2fxua1 c.55.1.1 (A:7-146) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 140

 Score =  232 bits (593), Expect = 2e-80
 Identities = 135/140 (96%), Positives = 136/140 (97%)

Query: 8   ALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 67
           ALV DNGSG+ KAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT
Sbjct: 1   ALVCDNGSGLVKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDSYVGDEAQSKRGILT 60

Query: 68  LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANREKMTQIMFET 127
           LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHP LLTEAPLNPKANREKMTQIMFET
Sbjct: 61  LKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPTLLTEAPLNPKANREKMTQIMFET 120

Query: 128 FNTPAMYVAIQAVLSLYASG 147
           FN PAMYVAIQAVLSLYASG
Sbjct: 121 FNVPAMYVAIQAVLSLYASG 140


>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow (Bos
           taurus) [TaxId: 9913]}
          Length = 158

 Score =  222 bits (566), Expect = 5e-76
 Identities = 63/155 (40%), Positives = 88/155 (56%), Gaps = 9/155 (5%)

Query: 6   VAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG--------RPRHQGVMVGMGQKDSYVGD 57
           + A VVD G+G  K G+AG+  P+ + PS +             + VM G+   D ++GD
Sbjct: 3   LPACVVDCGTGYTKLGYAGNTEPQFIIPSCIAIKESAKVGDQAQRRVMKGVDDLDFFIGD 62

Query: 58  EAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNELRVAPEEHPILLTEAPLNPKANR 117
           EA  K      K+PI HGI+ +WD ME+      +  LR  PE+H  LLTE PLN   NR
Sbjct: 63  EAIEKPTY-ATKWPIRHGIVEDWDLMERFMEQVIFKYLRAEPEDHYFLLTEPPLNTPENR 121

Query: 118 EKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGI 152
           E   +IMFE+FN P +Y+A+QAVL+L AS  +  +
Sbjct: 122 EYTAEIMFESFNVPGLYIAVQAVLALAASWTSRQV 156


>d2fxua2 c.55.1.1 (A:147-371) Actin {Cow (Bos taurus) [TaxId: 9913]}
          Length = 225

 Score = 47.4 bits (112), Expect = 1e-07
 Identities = 19/21 (90%), Positives = 20/21 (95%)

Query: 148 RTTGIVLDSGDGVSHTVPIYE 168
           RTTGIVLDSGDGV+H VPIYE
Sbjct: 1   RTTGIVLDSGDGVTHNVPIYE 21


>d1k8ka2 c.55.1.1 (A:161-418) Actin-related protein 3, Arp3 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 258

 Score = 44.8 bits (105), Expect = 1e-06
 Identities = 12/19 (63%), Positives = 16/19 (84%)

Query: 150 TGIVLDSGDGVSHTVPIYE 168
           TG V+DSGDGV+H +P+ E
Sbjct: 4   TGTVIDSGDGVTHVIPVAE 22


>d1k8kb1 c.55.1.1 (B:154-343) Actin-related protein 2, Arp2 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 190

 Score = 41.6 bits (97), Expect = 1e-05
 Identities = 12/18 (66%), Positives = 16/18 (88%)

Query: 151 GIVLDSGDGVSHTVPIYE 168
           G+V+DSGDGV+H  P+YE
Sbjct: 1   GVVVDSGDGVTHICPVYE 18


>d2p6ra1 a.4.5.43 (A:404-488) Hel308 helicase {Archaeoglobus
          fulgidus [TaxId: 2234]}
          Length = 85

 Score = 24.0 bits (52), Expect = 5.1
 Identities = 9/41 (21%), Positives = 18/41 (43%), Gaps = 3/41 (7%)

Query: 53 SYVGDEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYN 93
          S +G E   +   L++   I  G     +++E  +  TF+ 
Sbjct: 4  SKLGVETHLRFHSLSI---ICDGYAKTLEELEDFFADTFFF 41


>d1ei6a_ c.76.1.4 (A:) Phosphonoacetate hydrolase {Pseudomonas
          fluorescens [TaxId: 294]}
          Length = 406

 Score = 25.2 bits (53), Expect = 5.9
 Identities = 8/29 (27%), Positives = 12/29 (41%)

Query: 65 ILTLKYPIEHGIITNWDDMEKIWHHTFYN 93
          I+T   P  HGI  N+   ++       N
Sbjct: 70 IVTGAPPSVHGICGNFFFDQETQEEVLMN 98


>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 461

 Score = 25.0 bits (53), Expect = 6.7
 Identities = 7/40 (17%), Positives = 16/40 (40%), Gaps = 3/40 (7%)

Query: 32  FPSIVGRPRHQGVMVGMGQKDSYVGDEAQS---KRGILTL 68
           +P  + R R +G        D  + ++  S    +G++  
Sbjct: 388 YPQFISRVRGRGTFCSFDTPDESIRNKLISIARNKGVMLG 427


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.413 

Gapped
Lambda     K      H
   0.267   0.0624    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 667,590
Number of extensions: 29342
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 11
Length of query: 174
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 95
Effective length of database: 1,322,926
Effective search space: 125677970
Effective search space used: 125677970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.3 bits)