BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2725
(143 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2J3T|C Chain C, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 145
Score = 147 bits (371), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 69/135 (51%), Positives = 95/135 (70%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
MTV+N YLFD G L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREP 120
FLS++T++Y LH YETPTG+K V+NTD+ +R L NPL +
Sbjct: 61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135
>pdb|3CUE|C Chain C, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|I Chain I, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|O Chain O, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|U Chain U, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 159
Score = 68.6 bits (166), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 54/103 (52%), Gaps = 6/103 (5%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGM------PREEEGKLMYGMLFSLKSFVSKISP 54
M +Y+F++FD ++ EW +S EE+ KL+YGM+FSL+S K+S
Sbjct: 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK 60
Query: 55 LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFL 97
K S T KY +H Y T +GL FVL +D + Q + L
Sbjct: 61 GSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVL 103
>pdb|2J3T|D Chain D, The Crystal Structure Of The Bet3-Trs33-Bet5-Trs23 Complex
Length = 219
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH Y+T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREPIKSDLFQNAL 130
D + + L NP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLL-RKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>pdb|2ZMV|A Chain A, Crystal Structure Of Synbindin
pdb|2ZMV|B Chain B, Crystal Structure Of Synbindin
Length = 227
Score = 42.4 bits (98), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH Y+T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLAXXXXXXXXXXXXXNPLINPREPIKSDLFQNAL 130
D + + L NP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLL-RKIYEIYSDFALKNPFYSLEMPIRCELFDQNL 202
>pdb|3OT2|A Chain A, Crystal Structure Of A Putative Nuclease Belonging To
Duf820 (Ava_3926) From Anabaena Variabilis Atcc 29413 At
1.96 A Resolution
pdb|3OT2|B Chain B, Crystal Structure Of A Putative Nuclease Belonging To
Duf820 (Ava_3926) From Anabaena Variabilis Atcc 29413 At
1.96 A Resolution
Length = 187
Score = 29.3 bits (64), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%), Gaps = 10/69 (14%)
Query: 21 WNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80
W+R+ PREE G++ L + + +SP S+T K TK LH + T
Sbjct: 87 WSRI-----PREENGEIANIFLIAPDWTIEILSPDQSQT-----KVTKNILHCLKHGTQX 136
Query: 81 KFVLNTDVQ 89
++++ D Q
Sbjct: 137 GWLIDPDEQ 145
>pdb|4F9D|A Chain A, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
pdb|4F9D|B Chain B, Structure Of Escherichia Coli Pgab 42-655 In Complex With
Nickel
Length = 618
Score = 28.1 bits (61), Expect = 1.8, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 21 WNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDS 57
W + +G+ EE KL Y M F+L+S ++ S LDS
Sbjct: 213 WPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDS 249
>pdb|3VUS|A Chain A, Escherichia Coli Pgab N-terminal Domain
pdb|3VUS|B Chain B, Escherichia Coli Pgab N-terminal Domain
Length = 268
Score = 27.3 bits (59), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 22/37 (59%)
Query: 21 WNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDS 57
W + +G+ EE KL Y M F+L+S ++ S LDS
Sbjct: 209 WPYGEANGIAIEELKKLGYDMFFTLESGLANASQLDS 245
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 26.9 bits (58), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 57 SKTGFLSYKTTKYALHLYETPTGLKFV 83
+K+G T ++ + +Y+T TGLKFV
Sbjct: 115 NKSGLRQLCTDQFTMFIYQTLTGLKFV 141
>pdb|3QFT|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH DOMAIN And R457h Mutant)
Length = 458
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALH 72
+ K+ G + LKS+ ++ P D+K FL+ TT L+
Sbjct: 35 DAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLN 74
>pdb|3QFS|A Chain A, Crystal Structure Of Nadph-Cytochrome P450 Reductase
(FadNADPH Domain)
Length = 458
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALH 72
+ K+ G + LKS+ ++ P D+K FL+ TT L+
Sbjct: 35 DAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLN 74
>pdb|3QFR|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
pdb|3QFR|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
(R457h Mutant)
Length = 618
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALH 72
+ K+ G + LKS+ ++ P D+K FL+ TT L+
Sbjct: 195 DAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLN 234
>pdb|3QE2|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
pdb|3QE2|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 Reductase
Length = 618
Score = 26.2 bits (56), Expect = 7.6, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALH 72
+ K+ G + LKS+ ++ P D+K FL+ TT L+
Sbjct: 195 DAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLN 234
>pdb|3QFC|A Chain A, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
pdb|3QFC|B Chain B, Crystal Structure Of Human Nadph-Cytochrome P450 (V492e
Mutant)
Length = 618
Score = 25.8 bits (55), Expect = 7.8, Method: Composition-based stats.
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALH 72
+ K+ G + LKS+ ++ P D+K FL+ TT L+
Sbjct: 195 DAAKVYMGEMGRLKSYENQKPPFDAKNPFLAAVTTNRKLN 234
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.392
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,752,526
Number of Sequences: 62578
Number of extensions: 129532
Number of successful extensions: 278
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 17
length of query: 143
length of database: 14,973,337
effective HSP length: 89
effective length of query: 54
effective length of database: 9,403,895
effective search space: 507810330
effective search space used: 507810330
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)