BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2725
(143 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 106/135 (78%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
MTV+N YLFD G L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
FLS++T++Y LH YETPTG+K V+NTD+ +R L +YS +YVE+VVKNPL +
Sbjct: 61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 169 bits (427), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 77/135 (57%), Positives = 106/135 (78%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
MTV+N YLFD G L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
FLS++T++Y LH YETPTG+K V+NTD+ +R L +YS +YVE+VVKNPL +
Sbjct: 61 FLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 105/135 (77%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
MTV+N YLFD G L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
FL+++T++Y LH YETPTG+K V+NTD+ +R L +YS +YVE VVKNPL +
Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 167 bits (422), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 76/135 (56%), Positives = 105/135 (77%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTG 60
MTV+N YLFD G L+Y+EW+R K +G+P+EEE KLMYGMLFS++SFVSK+SPLD K G
Sbjct: 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
FL+++T++Y LH YETPTG+K V+NTD+ +R L +YS +YVE VVKNPL +
Sbjct: 61 FLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPIRDVLHHIYSALYVELVVKNPLCPLGQT 120
Query: 121 IKSDLFQNALDALVK 135
++S+LF++ LD+ V+
Sbjct: 121 VQSELFRSRLDSYVR 135
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 59/136 (43%), Positives = 91/136 (66%), Gaps = 3/136 (2%)
Query: 3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISP--LDSKTG 60
+YN Y+F+ GT +YY +WN+ K S + E+ KL++GML+SLK+F++ SP +D KTG
Sbjct: 2 IYNIYIFNKDGTCIYYEDWNKKKQS-QNQSEDQKLLFGMLYSLKAFITSSSPKKIDDKTG 60
Query: 61 FLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREP 120
F YKT+ Y LH YET + +KF++ +D D+R L +YS+++VEYV+KNP+
Sbjct: 61 FHCYKTSTYKLHYYETLSCIKFIIMSDPNVPDLRDDLKKIYSQIFVEYVIKNPIYKHGTT 120
Query: 121 IKSDLFQNALDALVKE 136
+K D F N L+ +K+
Sbjct: 121 VKCDTFINQLNLYLKQ 136
>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1
SV=1
Length = 159
Score = 84.0 bits (206), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 46/123 (37%), Positives = 68/123 (55%), Gaps = 7/123 (5%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGM------PREEEGKLMYGMLFSLKSFVSKISP 54
M +Y+F++FD ++ EW +S EE+ KL+YGM+FSL+S K+S
Sbjct: 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSK 60
Query: 55 LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPL 114
K S T KY +H Y T +GL FVL +D + Q + L +YS +YV+Y V N L
Sbjct: 61 GSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKY-VSNNL 119
Query: 115 INP 117
++P
Sbjct: 120 LSP 122
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 80/156 (51%), Gaps = 19/156 (12%)
Query: 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMP-----------REEEGKLMYGMLFSLKSFV 49
MT+Y FY++ ++ W + M ++ KL++G++FSL++ V
Sbjct: 1 MTIYAFYIYSRKCECVFAHRWKPSDRNSMETLVSQLEQNSIEDDMEKLIFGVVFSLRNMV 60
Query: 50 SKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYV 109
KI+ + F+SY T+KY LH YETPT L+ + T+ + + L +Y+ +YVE+V
Sbjct: 61 KKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTHVLQQIYTTLYVEFV 118
Query: 110 VKNPLINPREP------IKSDLFQNALDALVKESSI 139
VK+PL P I ++F+ LD V+ S
Sbjct: 119 VKHPLYTHVPPSAEEGGINCEIFRITLDRFVRTLSC 154
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 11/138 (7%)
Query: 1 MTVYNFYLFDSFGTLLY---YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD- 56
MT+ + Y+ + GTL+Y + +L H+ R + SL + S +SP+
Sbjct: 1 MTINSIYILNKAGTLIYQNDFGNTEKLSHNSYIR------LGSTFHSLHAIASNLSPVSG 54
Query: 57 SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLIN 116
S +G +T + L ++T TG+KF + D Q + + L VY ++Y +YV+KNP
Sbjct: 55 SSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVY-ELYTDYVLKNPFYE 113
Query: 117 PREPIKSDLFQNALDALV 134
I+ DLF L+ L+
Sbjct: 114 IEMQIRCDLFDYKLNRLL 131
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH Y+T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
D + + L +Y ++Y ++ +KNP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH Y+T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
D + + L +Y ++Y ++ +KNP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 58.2 bits (139), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 65/128 (50%), Gaps = 3/128 (2%)
Query: 3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFL 62
++ + + G+L++ E+ + P E ++ G + + + ++ISPL +G
Sbjct: 1 MHALIIINRAGSLIFQREFGSSPTALTPNEY--LVLAGTIHGVHAISTQISPLPGSSGIQ 58
Query: 63 SYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIK 122
+ + +H+ +T TG+KFVL T+ + + R L Y ++Y +YV+KNP PIK
Sbjct: 59 LLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQLQKFY-ELYSDYVLKNPFYTLEMPIK 117
Query: 123 SDLFQNAL 130
LF L
Sbjct: 118 CQLFDEQL 125
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH ++T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
D + + L +Y ++Y ++ +KNP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH ++T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
D + + L +Y ++Y ++ +KNP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 57.4 bits (137), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 28 GMPR--EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
G PR E ++ M SL + S++SP +G +T + LH ++T TG+KFV+
Sbjct: 99 GRPRLTSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVL 158
Query: 86 TDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNAL 130
D + + L +Y ++Y ++ +KNP + PI+ +LF L
Sbjct: 159 ADPRQAGIDSLLRKIY-EIYSDFALKNPFYSLEMPIRCELFDQNL 202
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 57/115 (49%), Gaps = 10/115 (8%)
Query: 30 PREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGLKF 82
P E + K Y + SL KIS + D + +L Y T Y ++ Y T + +KF
Sbjct: 21 PTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLGLLYPTEDYKVYGYVTNSKVKF 80
Query: 83 VLNTDVQAQDVRKF-LASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDALV 134
V+ D +R + S++ K++ Y V+ NP NP +PI+S F N + +++
Sbjct: 81 VMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPGDPIQSRAFDNTVTSMM 135
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 37.7 bits (86), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 63/125 (50%), Gaps = 18/125 (14%)
Query: 28 GMPREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGL 80
+P + E K Y + SL KIS + D + +L Y T Y ++ Y T + +
Sbjct: 19 SVPVQNELKFHYTVHTSLDVVEEKISAVGKAMADQRELYLGLLYPTEDYKVYGYVTNSKV 78
Query: 81 KFVL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDAL 133
KFV+ NT ++ ++R S++ K++ + V+ NP NP + I+S F + + A+
Sbjct: 79 KFVIVVDSSNTSLRDNEIR----SMFRKLHNSFTDVMCNPFYNPGDTIQSKAFDSMVSAM 134
Query: 134 VKESS 138
+ ++S
Sbjct: 135 MVQAS 139
>sp|Q03784|TRS23_YEAST Trafficking protein particle complex subunit 23 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS23 PE=1
SV=1
Length = 219
Score = 37.0 bits (84), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 25/103 (24%)
Query: 57 SKTGFLSYKTTKYALHLYETPTGLKFVL------------------------NTDVQAQD 92
+K+G T ++ + +Y+T TGLKFV +++ Q
Sbjct: 115 NKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQI 174
Query: 93 VRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVK 135
FL VY +Y +YV+K+P + PI+S+LF + +V+
Sbjct: 175 ADNFLRKVYC-LYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVE 216
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 60/123 (48%), Gaps = 18/123 (14%)
Query: 28 GMPREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGL 80
+P E E K Y + SL KIS + D + +L Y T Y ++ Y T + +
Sbjct: 19 SVPTENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKV 78
Query: 81 KFVL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDAL 133
KFV+ NT ++ ++R S++ K++ Y ++ NP NP + I S F ++++
Sbjct: 79 KFVMVVDSSNTALRDNEIR----SMFRKLHNSYTDIMCNPFYNPGDRIHSRAFDTMVNSM 134
Query: 134 VKE 136
+ +
Sbjct: 135 MMQ 137
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos
taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 28 GMPREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGL 80
+P E E K Y + SL KIS + D + +L Y T Y ++ Y T + +
Sbjct: 19 SIPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKV 78
Query: 81 KFVL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDAL 133
KFV+ NT ++ ++R S++ K++ Y V+ NP NP + I+S F + ++
Sbjct: 79 KFVMVVDSSNTALRDNEIR----SMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDGMVTSM 134
Query: 134 V 134
+
Sbjct: 135 M 135
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 35.8 bits (81), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 30 PREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGLKF 82
P E E K Y + SL KIS + D + +L Y T Y ++ Y T + +KF
Sbjct: 21 PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKF 80
Query: 83 VL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDALV 134
V+ NT ++ ++R S++ K++ Y V+ NP NP + I+S F + +++
Sbjct: 81 VMVVDSSNTALRDNEIR----SMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 35.8 bits (81), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 58/119 (48%), Gaps = 18/119 (15%)
Query: 30 PREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGLKF 82
P E E K Y + SL KIS + D + +L Y T Y ++ Y T + +KF
Sbjct: 21 PTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKF 80
Query: 83 VL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDALV 134
V+ NT ++ ++R S++ K++ Y V+ NP NP + I+S F + +++
Sbjct: 81 VMVVDSSNTALRDNEIR----SMFRKLHNSYTDVMCNPFYNPGDRIQSRAFDTMVTSMM 135
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ DV+ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYD-LYIKFAM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 35.4 bits (80), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ DV+ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYD-LYIKFAM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ DV+ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYD-LYIKFAM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ D++ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYD-LYIKFAM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo
sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 59/126 (46%), Gaps = 21/126 (16%)
Query: 30 PREEEGKLMYGMLFSLKSFVSKISPL-----DSKTGFLS--YKTTKYALHLYETPTGLKF 82
P E E K Y + SL KIS + D + +L Y T Y ++ Y T + +KF
Sbjct: 21 PTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGLLYPTEDYKVYGYVTNSKVKF 80
Query: 83 VL-----NTDVQAQDVRKFLASVYSKVYVEY--VVKNPLINPREPIKSDLFQNALDALVK 135
V+ NT ++ ++R S++ K++ Y V+ NP NP + I+S A D +V
Sbjct: 81 VMVVDSSNTALRDNEIR----SMFRKLHNSYTDVMCNPFYNPGDRIQS---SRAFDNMVT 133
Query: 136 ESSISL 141
I +
Sbjct: 134 SMMIQV 139
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 34.7 bits (78), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ DV+ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYD-LYIKFSM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ D++ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYD-LYIKFSM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 34.3 bits (77), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++F++ D++ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYD-LYIKFSM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F + L K+ +S
Sbjct: 124 SAFDRKVQFLGKKHLLS 140
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 33.1 bits (74), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 19/77 (24%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 65 KTTKYALHLYETPTGLKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKS 123
K ++ + + T ++ ++ DV+ +D ++ F VY +Y+++ + NP P PI+S
Sbjct: 66 KFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYD-LYIKFAM-NPFYEPNSPIRS 123
Query: 124 DLFQNALDALVKESSIS 140
F+ + L K+ +S
Sbjct: 124 TAFERKVQFLGKKHLLS 140
>sp|Q7XR80|ARP8_ORYSJ Actin-related protein 8 OS=Oryza sativa subsp. japonica GN=ARP8
PE=2 SV=1
Length = 484
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 26 HSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
H G+ + +L + +++ ++ V +D +G+ Y +KYA T L+F
Sbjct: 115 HPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNI 174
Query: 86 TDVQAQDVRKFLASVYSKVYVE 107
+R FL+++Y+++ V+
Sbjct: 175 ESPMYARLRHFLSTIYTRMQVK 196
>sp|A8WAT2|ARP8_ORYSI Actin-related protein 8 OS=Oryza sativa subsp. indica GN=ARP8 PE=2
SV=1
Length = 484
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/82 (21%), Positives = 40/82 (48%)
Query: 26 HSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85
H G+ + +L + +++ ++ V +D +G+ Y +KYA T L+F
Sbjct: 115 HPGLYYDSSPQLSFKHVYTRRAVVPGSIIVDGGSGYCKYGWSKYAAPSGRCATFLEFGNI 174
Query: 86 TDVQAQDVRKFLASVYSKVYVE 107
+R FL+++Y+++ V+
Sbjct: 175 ESPMYARLRHFLSTIYTRMQVK 196
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 29.6 bits (65), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 29/53 (54%), Gaps = 1/53 (1%)
Query: 74 YETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLF 126
Y TP+ ++F+L Q+ D K ++Y++ ++ +P P +PI+S F
Sbjct: 73 YVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLM-SPFYQPNQPIRSQAF 124
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 80 LKFVLNTDVQAQD-VRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS 138
++F++ DV+ +D ++ F VY +Y+++ + NP PI+S F+ + L K+
Sbjct: 81 MRFIMLHDVRQEDGIKNFFNDVYD-LYIKFAM-NPFYELNSPIRSSAFERKVQFLGKKHL 138
Query: 139 IS 140
+S
Sbjct: 139 LS 140
>sp|P17906|RSBX_BACSU Phosphoserine phosphatase RsbX OS=Bacillus subtilis (strain 168)
GN=rsbX PE=4 SV=1
Length = 199
Score = 29.3 bits (64), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
Query: 59 TGFLSYKTTKYALHLYETPTGLKFVLNTD-VQAQDVRKFL 97
+G+LS K KY H G KF+++TD + D+R L
Sbjct: 128 SGYLSGKPQKYKTHTATYEKGSKFIIHTDGLNVPDIRSHL 167
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.136 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 51,221,166
Number of Sequences: 539616
Number of extensions: 1949873
Number of successful extensions: 3883
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 3854
Number of HSP's gapped (non-prelim): 38
length of query: 143
length of database: 191,569,459
effective HSP length: 106
effective length of query: 37
effective length of database: 134,370,163
effective search space: 4971696031
effective search space used: 4971696031
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)