Query psy2725
Match_columns 143
No_of_seqs 115 out of 525
Neff 7.1
Searched_HMMs 46136
Date Fri Aug 16 23:37:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2725.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2725hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3368|consensus 100.0 2.3E-48 5.1E-53 276.7 15.3 138 1-138 1-140 (140)
2 PF04099 Sybindin: Sybindin-li 100.0 5.5E-48 1.2E-52 283.1 15.8 134 3-136 1-142 (142)
3 KOG3369|consensus 100.0 2.3E-40 4.9E-45 246.0 13.9 136 1-137 1-198 (199)
4 COG5122 TRS23 Transport protei 100.0 1.3E-35 2.9E-40 206.9 11.7 134 1-137 1-134 (134)
5 PF04628 Sedlin_N: Sedlin, N-t 100.0 2.1E-28 4.5E-33 177.2 12.5 125 8-136 1-132 (132)
6 KOG3487|consensus 99.9 2.7E-27 5.9E-32 167.9 11.0 134 1-137 1-136 (139)
7 COG5603 TRS20 Subunit of TRAPP 99.9 2.5E-26 5.3E-31 161.1 10.7 132 1-137 1-135 (136)
8 KOG3444|consensus 99.8 9.8E-20 2.1E-24 126.1 10.4 107 3-118 2-120 (121)
9 KOG0861|consensus 95.9 0.21 4.6E-06 38.0 10.7 97 1-105 1-101 (198)
10 PF01217 Clat_adaptor_s: Clath 95.6 0.48 1E-05 34.0 11.6 91 2-108 1-94 (141)
11 PF03164 Mon1: Trafficking pro 95.3 0.37 8.1E-06 41.1 11.6 85 5-104 13-99 (415)
12 PF13774 Longin: Regulated-SNA 92.9 1.2 2.5E-05 29.0 7.7 58 46-107 3-62 (83)
13 PF08217 DUF1712: Fungal domai 77.3 46 0.001 30.0 11.2 96 32-135 32-136 (604)
14 PF08253 Leader_Erm: Erm Leade 69.7 4.6 9.9E-05 19.4 1.7 11 1-11 1-11 (19)
15 KOG0936|consensus 59.5 71 0.0015 24.0 7.2 81 2-90 1-81 (182)
16 PF03259 Robl_LC7: Roadblock/L 59.0 34 0.00074 21.7 5.1 63 3-78 15-83 (91)
17 PF13585 CHU_C: C-terminal dom 58.8 11 0.00024 24.9 2.6 18 3-20 28-45 (87)
18 PF04370 DUF508: Domain of unk 55.6 43 0.00094 24.6 5.4 66 73-140 48-141 (156)
19 COG5143 SNC1 Synaptobrevin/VAM 55.0 84 0.0018 24.2 7.2 61 45-107 34-104 (190)
20 PF12321 DUF3634: Protein of u 53.1 57 0.0012 22.9 5.5 65 6-87 15-79 (108)
21 PF08465 Herpes_TK_C: Thymidin 40.7 19 0.0004 19.9 1.2 15 100-115 9-23 (33)
22 PF03288 Pox_D5: Poxvirus D5 p 37.1 47 0.001 21.3 3.0 35 98-136 25-59 (86)
23 PF14120 YhzD: YhzD-like prote 36.8 39 0.00086 21.3 2.4 23 1-23 1-23 (61)
24 PF10407 Cytokin_check_N: Cdc1 36.8 47 0.001 21.6 2.9 11 80-90 3-13 (73)
25 COG5030 APS2 Clathrin adaptor 35.7 1.2E+02 0.0026 22.4 5.1 74 2-90 1-75 (152)
26 PF08800 VirE_N: VirE N-termin 35.4 1.3E+02 0.0028 21.5 5.3 23 68-90 57-81 (136)
27 COG2122 Uncharacterized conser 33.0 91 0.002 25.0 4.4 53 83-136 25-80 (256)
28 KOG0862|consensus 30.2 2.7E+02 0.0059 21.9 8.4 84 46-134 38-127 (216)
29 KOG4497|consensus 28.7 36 0.00079 28.9 1.7 22 66-87 199-220 (447)
30 KOG2740|consensus 28.0 26 0.00056 29.9 0.7 22 2-23 1-22 (418)
31 PF04556 DpnII: DpnII restrict 27.1 72 0.0016 26.2 3.1 34 76-110 239-277 (286)
32 COG5541 RET3 Vesicle coat comp 27.0 2.8E+02 0.0061 21.0 6.8 101 3-113 8-112 (187)
33 KOG1273|consensus 26.2 4E+02 0.0087 22.6 7.3 49 42-90 240-293 (405)
34 PHA00743 helix-turn-helix prot 22.7 92 0.002 18.8 2.2 22 90-112 5-26 (51)
35 COG2213 MtlA Phosphotransferas 22.2 23 0.00049 30.5 -0.6 24 91-115 247-270 (472)
36 COG4092 Predicted glycosyltran 21.5 42 0.00091 27.7 0.7 28 90-117 51-78 (346)
37 COG3260 Ni,Fe-hydrogenase III 21.4 1.8E+02 0.0038 21.5 3.9 39 64-103 34-72 (148)
38 PF13198 DUF4014: Protein of u 20.8 54 0.0012 21.3 1.0 25 96-122 43-67 (72)
39 KOG4204|consensus 20.5 67 0.0015 25.3 1.7 35 99-138 38-72 (231)
40 COG4918 Uncharacterized protei 20.2 66 0.0014 22.5 1.4 16 8-23 56-71 (114)
No 1
>KOG3368|consensus
Probab=100.00 E-value=2.3e-48 Score=276.67 Aligned_cols=138 Identities=66% Similarity=1.113 Sum_probs=133.5
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|+||+||||||+|+|||++||.++++++...++|+||++||++||+.+++|++|.+.++||.+++|+.||+|.||||||+
T Consensus 1 Mtiy~~yIFdR~g~Cl~y~EW~r~~~s~~~~eee~KL~yGmlFSlkS~v~Kls~~d~k~~f~sy~Ts~YklhfyeTptgl 80 (140)
T KOG3368|consen 1 MTIYNFYIFDRNGVCLFYREWNRTKQSGIPNEEEAKLMYGMLFSLKSFVSKLSPGDVKDGFLSYKTSKYKLHFYETPTGL 80 (140)
T ss_pred CeEEEEEEEcCCccEEEehhcccccccCCchhHHHHHHHHHHhhHHHHHHhcCCCCcccCeeEEeeceeEEEEEEcCCCc
Confidence 99999999999999999999999998888778889999999999999999999998889999999999999999999999
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCC--CCCCccchhHHHHHHHHHHhcc
Q psy2725 81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLIN--PREPIKSDLFQNALDALVKESS 138 (143)
Q Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~--~~~pI~s~~F~~~v~~~~~~~~ 138 (143)
||||+||++++++|++|+.||+.+||+||++||+|+ +++||+|+.|...+++.++++|
T Consensus 81 k~vl~Tdpk~~~ir~vLq~IYs~lyVE~Vvknpl~~~~~~~~i~~E~fr~~ld~~vrsl~ 140 (140)
T KOG3368|consen 81 KFVLNTDPKAGSIRDVLQYIYSHLYVEYVVKNPLYTYDPGSPIRSELFRKILDRFVRSLP 140 (140)
T ss_pred EEEEecCCCcccHHHHHHHHHHHHHHHHHHcCcccccCCCCccchHHHHHHHHhhhccCC
Confidence 999999999999999999999779999999999999 9999999999999999999765
No 2
>PF04099 Sybindin: Sybindin-like family ; InterPro: IPR007233 Sybindin is a physiological syndecan-2 ligand on dendritic spines, the small protrusions on the surface of dendrites that receive the vast majority of excitatory synapses. Syndecan-2 induces spine formation by recruiting intracellular vesicles toward postsynaptic sites through the interaction with synbindin []. ; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005801 cis-Golgi network; PDB: 3CUE_C 2J3T_C 2ZMV_B 2JSN_A.
Probab=100.00 E-value=5.5e-48 Score=283.05 Aligned_cols=134 Identities=47% Similarity=0.825 Sum_probs=104.0
Q ss_pred EEEEEEEeCCCCeeEEeeeccccCC--CCCCchhHHHHHHHHHhHHHHHHhhCCC------CCCCceeEeeccceEEEEE
Q psy2725 3 VYNFYLFDSFGTLLYYAEWNRLKHS--GMPREEEGKLMYGMLFSLKSFVSKISPL------DSKTGFLSYKTTKYALHLY 74 (143)
Q Consensus 3 iy~~~I~~r~g~~iy~~~~~~~~~~--~~~~~~~~~ll~g~l~sL~~i~~kls~~------~~~~~~~~~~t~~ykl~~~ 74 (143)
||+||||||+|+|||+++|.+.++. +...+||.++|+|++|||++|+.+++|. ++.+|+++++|++||+|||
T Consensus 1 IyslyI~nr~G~lIy~~~~~~~~~~~~~~~~~ne~~ll~g~l~sl~~i~~klsp~~~~~~~~~~~g~~~~~T~~yklh~~ 80 (142)
T PF04099_consen 1 IYSLYIFNRSGGLIYYREWNRSKNEGQPKLSSNEYKLLAGMLHSLKAIASKLSPVDSKPNEPGSSGFESFETDTYKLHCF 80 (142)
T ss_dssp EEEEEEE-TTS-EEEEEETSSSS--E-SSSCHHHHHHHHHHHHHHHHHHHHT-SSSSSS-SSS--SEEEEEESS-EEEEE
T ss_pred CeEEEEEeCCcceeeehhhCCCCccccCCCChhHHHHHHhhHHHHHHHHHHhCCCCcccccccceeEEEEEeCCEEEEEE
Confidence 7999999999999999999986532 2346889999999999999999999993 3346899999999999999
Q ss_pred ecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHh
Q psy2725 75 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKE 136 (143)
Q Consensus 75 ~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 136 (143)
||+||+|||++||++.+++++.|.++|.++|+|||+|||||++||||+|++||++|++++++
T Consensus 81 eT~TGlKFvl~td~~~~~~~~~l~~~~~~lY~dyV~KNPfy~~~~pI~~~lF~~~l~~~~~~ 142 (142)
T PF04099_consen 81 ETPTGLKFVLITDPNVPSLRDELLRIYYELYVDYVVKNPFYSLEMPIRCELFDTKLDQYVKS 142 (142)
T ss_dssp E-TTS-EEEEEE-TTCCHCHHHHHHHHHHHHHHHHHS-TTS-TTS----HHHHHHHHHHHHC
T ss_pred EcCcCcEEEEEecCCCccHHHHHHHHHHHHHHHHHhhCCCCCCCCcEehHHHHHHHHHHHhC
Confidence 99999999999999986665555444449999999999999999999999999999999874
No 3
>KOG3369|consensus
Probab=100.00 E-value=2.3e-40 Score=245.96 Aligned_cols=136 Identities=25% Similarity=0.518 Sum_probs=124.4
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccC------------------------------------------------------
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKH------------------------------------------------------ 26 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~------------------------------------------------------ 26 (143)
|+|++++|+||+|++||++++..+.+
T Consensus 1 maI~~~~IINKsGgLIfq~e~~~~~~e~et~d~~l~~~~~~~vvaf~~kdgik~~~~~~~vNg~~v~g~~~~~Gl~~~~~ 80 (199)
T KOG3369|consen 1 MAIESLFIINKSGGLIFQREFGNPRQELETFDLLLLASDLKVVVAFGSKDGIKVGHLVQAVNGENVNGYILYDGLSSPRN 80 (199)
T ss_pred CceEEEEEEecCCcEEEEeecCCccccccchhhhhhhcccceeEEeecccccchhheeeeecccccccceecccccCccc
Confidence 89999999999999999999972110
Q ss_pred --------CCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCchhHHHHHH
Q psy2725 27 --------SGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLA 98 (143)
Q Consensus 27 --------~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~~i~~~l~ 98 (143)
.++...||...|++++||+.+|+++++|.++++|++..+|++|++|||+|.||+|||+++++..+.++.+|+
T Consensus 81 ypv~~~f~~p~~ttNEkL~las~fhsl~aI~~qlsp~~ksSGie~LetdtF~l~~~QTlTG~KFVvis~~~~~~aD~lLr 160 (199)
T KOG3369|consen 81 YPVNGKFGRPKLTTNEKLILASSFHSLFAISTQLSPEPKSSGIEVLETDTFTLHIFQTLTGTKFVVIAEPGTQGADSLLR 160 (199)
T ss_pred cccccccCCCcccccchhhhhhhhcchhheeeccCCCCCCCceEEEEeccEEEEEEEccCCcEEEEEecCCchhHHHHHH
Confidence 011246788889999999999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725 99 SVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES 137 (143)
Q Consensus 99 ~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 137 (143)
+|| ++|.|||+|||||+++|||+|++||++++.++.+.
T Consensus 161 KiY-elYsDyvlKNPfYSlEMPIRc~lFDe~lk~~le~~ 198 (199)
T KOG3369|consen 161 KIY-ELYSDYVLKNPFYSLEMPIRCELFDEKLKFLLESA 198 (199)
T ss_pred HHH-HHHHHHhhcCCccCcccceeHHHhhHHHHHHHhhc
Confidence 999 99999999999999999999999999999998865
No 4
>COG5122 TRS23 Transport protein particle (TRAPP) complex subunit [Intracellular trafficking and secretion]
Probab=100.00 E-value=1.3e-35 Score=206.87 Aligned_cols=134 Identities=24% Similarity=0.486 Sum_probs=123.1
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|++..|.|+||+|++||+|+|.++. ....+||+..|+|.+|+..+|+.++.|-.++.|++...++++.++.|+|.||+
T Consensus 1 mave~~~iINksGglifqref~~~e--t~lnsneyLiLastlhgV~aI~tq~~p~~gssg~~~l~~~~f~m~I~qT~TG~ 78 (134)
T COG5122 1 MAVEQFFIINKSGGLIFQREFGEGE--TELNSNEYLILASTLHGVSAILTQTIPLPGSSGRLVLYFRNFVMTIFQTTTGT 78 (134)
T ss_pred CceeEEEEEecCCcEEEEEeccCCc--cccCcccEEEEeechhhhhhhhhhcccCCCCCceEEEEeccEEEEEEEecCCc
Confidence 8999999999999999999997632 22257899999999999999999999977778999999999999999999999
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725 81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES 137 (143)
Q Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 137 (143)
|||+++..+..+.+--++++| ++|+|||+|||||.++|||+|.+||.++++++.++
T Consensus 79 kFV~~~~k~t~na~~ql~kiY-~lYsdYV~knPfys~EMPI~c~lFde~lkrm~e~~ 134 (134)
T COG5122 79 KFVFVAEKRTVNALFQLQKIY-SLYSDYVTKNPFYSPEMPIQCSLFDEHLKRMFEGH 134 (134)
T ss_pred EEEEEecCCchhHHHHHHHHH-HHHHHHhhcCCCCCcccceehhhhhHHHHHHhcCC
Confidence 999999888888887899999 99999999999999999999999999999988764
No 5
>PF04628 Sedlin_N: Sedlin, N-terminal conserved region; InterPro: IPR006722 Sedlin is a 140 amino-acid protein with a putative role in endoplasmic reticulum-to-Golgi transport. Several missense mutations and deletion mutations in the SEDL gene, which result in protein truncation by frame shift, are responsible for spondyloepiphyseal dysplasia tarda, a progressive skeletal disorder (OMIM:313400). [].; GO: 0006888 ER to Golgi vesicle-mediated transport, 0005622 intracellular; PDB: 3PR6_A 2J3W_A 1H3Q_A.
Probab=99.96 E-value=2.1e-28 Score=177.24 Aligned_cols=125 Identities=28% Similarity=0.400 Sum_probs=92.4
Q ss_pred EEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHh-HHHHHHhhCCCCCCCcee-EeeccceEEEEEecCCceEEEEE
Q psy2725 8 LFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFS-LKSFVSKISPLDSKTGFL-SYKTTKYALHLYETPTGLKFVLN 85 (143)
Q Consensus 8 I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~s-L~~i~~kls~~~~~~~~~-~~~t~~ykl~~~~T~Tg~KFvl~ 85 (143)
|||++++|||.+++...+... .+.+..++..++|+ |+.+.++++.......+. .+++++|++|||+|+||+||||+
T Consensus 1 IIg~~n~PLy~~~~~~~~~~~--~~~~~~l~~~~~h~sLD~iee~~~~~~~~~yLg~l~~~~~~~vygyvT~t~~Kfvl~ 78 (132)
T PF04628_consen 1 IIGPNNNPLYIRSFPSEKESS--SSDARHLYQFIAHSSLDVIEEKLWKSSSDMYLGLLDPFEDYKVYGYVTNTGIKFVLV 78 (132)
T ss_dssp EE-TTS-EEEEEEE--ST-CG--HHHHHHHHHHHHHHHHHHHHHCCHCSSSCSEEEEEEEETTEEEEEEETTT--EEEEE
T ss_pred CCCCCCcceEEEecCCCcccc--cchHHHHHHHHHHHHHHHHHHHHhhcccccccCceehhhhHHHHhhhccCceeEEEE
Confidence 899999999999998743210 01122346677776 666766666523334444 46899999999999999999999
Q ss_pred ec-----CCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHh
Q psy2725 86 TD-----VQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKE 136 (143)
Q Consensus 86 td-----~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 136 (143)
++ .+++++|++|++|| ++|++ +++||||++++||+|+.|+++|++++++
T Consensus 79 ~~~~~~~~~d~~ik~fF~~vh-~~Y~~-~~~NPF~~~~~~I~S~~Fd~~v~~l~~k 132 (132)
T PF04628_consen 79 HDMSDNSIRDEDIKQFFKEVH-ELYVK-ALCNPFYQPGTPIKSPKFDSRVRALAKK 132 (132)
T ss_dssp ECGGG-S--HHHHHHHHHHHH-HHHHH-HHTSTTCGCT-HHHHHHHHHHHHHHHHH
T ss_pred EecccCCcchHHHHHHHHHHH-HHHHH-HccCCCCCCCCCcCCHHHHHHHHHHhcC
Confidence 98 35789999999999 99999 6789999999999999999999999875
No 6
>KOG3487|consensus
Probab=99.95 E-value=2.7e-27 Score=167.86 Aligned_cols=134 Identities=19% Similarity=0.334 Sum_probs=114.4
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEe-eccceEEEEEecCCc
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSY-KTTKYALHLYETPTG 79 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~-~t~~ykl~~~~T~Tg 79 (143)
|+- +|.|+|+.++|+|+.+|..+.++...+++...|...++||..++++++.|..++..++.+ +.+++-+++|+|++|
T Consensus 1 m~~-yfaIig~~d~Pvye~e~~~~~~~~~~~~~~~~LN~FI~HAaLdiVde~~W~~snmYLktVDkfne~~VSAyvTas~ 79 (139)
T KOG3487|consen 1 MTA-YFAIIGHCDNPVYEMEFGCPENSKAARDDNRHLNQFIVHAALDIVDELQWTTSNMYLKTVDKFNELFVSAYVTASH 79 (139)
T ss_pred Cce-EEEEEecCCCceEEeecCCCCcccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhcceeEEEEEccCc
Confidence 453 799999999999999998643332223445557778999999999999998766667765 689999999999999
Q ss_pred eEEEEEecCCc-hhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725 80 LKFVLNTDVQA-QDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES 137 (143)
Q Consensus 80 ~KFvl~td~~~-~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 137 (143)
+||++++..++ ++++.||+++| ++|++. ++||||++++||+|+.||.+++.+.+++
T Consensus 80 i~f~mlh~~~~~~~ik~Ffqev~-elyik~-lmnpFy~~~dpirs~afd~kv~~~~rkh 136 (139)
T KOG3487|consen 80 IRFIMLHINRADDNIKLFFQEVH-ELYIKT-LMNPFYEINDPIRSPAFDHKVRGLARKH 136 (139)
T ss_pred EEEEEEeeccccccHHHHHHHHH-HHHHHH-HhCcccccCCccccHHHHHHHHHHHHHH
Confidence 99999999875 68999999999 999995 6699999999999999999999998875
No 7
>COG5603 TRS20 Subunit of TRAPP, an ER-Golgi tethering complex [Cell motility and secretion]
Probab=99.94 E-value=2.5e-26 Score=161.09 Aligned_cols=132 Identities=19% Similarity=0.323 Sum_probs=108.0
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHH-HHHHhHHHHHHhhCCCCCCCceeEe-eccceEEEEEecCC
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMY-GMLFSLKSFVSKISPLDSKTGFLSY-KTTKYALHLYETPT 78 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~-g~l~sL~~i~~kls~~~~~~~~~~~-~t~~ykl~~~~T~T 78 (143)
|+ -++.|+++.++|+|++++.... ++...+..+++. .++||..++++.+.|...+..+.++ ...+..|++|.||+
T Consensus 1 M~-~y~aIIg~KdnpVYe~e~~~~n--~~~d~~~~~~ln~fiihaSlDiv~~lqwsvN~~Y~~~~d~f~~l~IsAYi~pS 77 (136)
T COG5603 1 MG-EYLAIIGEKDNPVYEREYDPIN--KTSDGEYCRLLNQFIIHASLDIVVWLQWSVNTSYFDCLDSFGDLRISAYIMPS 77 (136)
T ss_pred CC-ceEEEEecCCCceeeeeecCcC--cccCHHHHHHHhHHhhhhhHHHHHHHHHHhhhHHHHHHHhhCCeEEEEEEccC
Confidence 44 3589999999999999998532 122344555554 6889888888888886555566655 47788999999999
Q ss_pred ceEEEEEecCC-chhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhc
Q psy2725 79 GLKFVLNTDVQ-AQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKES 137 (143)
Q Consensus 79 g~KFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~ 137 (143)
|+||+++|... ..++|.||+++| ++|+++ ++||||++++||+|+.||.+|+++.|.+
T Consensus 78 gmkf~~iH~n~s~~N~rsF~qevH-ely~kt-Lmspfy~~~~pirsqafd~~Vr~~ar~~ 135 (136)
T COG5603 78 GMKFLFIHQNQSRKNARSFLQEVH-ELYAKT-LMSPFYEPDEPIRSQAFDDGVREAARVC 135 (136)
T ss_pred CceEEEEeccchhhhHHHHHHHHH-HHHHHH-hhCcccCCCccccchhhhhhHHHHHHhh
Confidence 99999999765 578999999999 999996 5699999999999999999999998864
No 8
>KOG3444|consensus
Probab=99.82 E-value=9.8e-20 Score=126.10 Aligned_cols=107 Identities=24% Similarity=0.356 Sum_probs=90.6
Q ss_pred EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-C----CCce--eEeeccceEEEEEe
Q psy2725 3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-S----KTGF--LSYKTTKYALHLYE 75 (143)
Q Consensus 3 iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~----~~~~--~~~~t~~ykl~~~~ 75 (143)
+.++.++++.++|+|.+.+.. .+++.++.+.+..||+.+.++++..+ + ++-| .+++|++||+|+|+
T Consensus 2 ~v~~av~g~kn~~lyi~s~t~-------~e~~L~~~y~v~~sLDVieekvn~~gkg~~tsne~fLGLLy~ted~kvYgfv 74 (121)
T KOG3444|consen 2 LVCLAVAGPKNEPLYIESITP-------KEKELKLHYQVHLSLDVIEEKVNDPGKGERTSNELFLGLLYPTEDYKVYGFV 74 (121)
T ss_pred EEEEEEEcCCCCccEEEecCc-------HHHHHHhHhhhhhhHHHHHHHhcCcccCccchhhhhhcccccccceeEEEEE
Confidence 457889999999999998864 36788888888899999999996422 1 1222 36799999999999
Q ss_pred cCCceEEEEEecC-----CchhHHHHHHHHHHhhhhhhhhcCCCCCCC
Q psy2725 76 TPTGLKFVLNTDV-----QAQDVRKFLASVYSKVYVEYVVKNPLINPR 118 (143)
Q Consensus 76 T~Tg~KFvl~td~-----~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~ 118 (143)
|+|.+|||+++|. ++.++|++||.+| -+|+| +++||||-|+
T Consensus 75 tNTkVKFIlvvdssd~avreteiRsv~r~~h-~l~td-~~~npfy~pg 120 (121)
T KOG3444|consen 75 TNTKVKFILVVDSSDYAVRETEIRSVFRILH-LLYTD-LSCNPFYLPG 120 (121)
T ss_pred eccEEEEEEEEcCCcceehhHHHHHHHHHHH-HHHHH-heecceeccC
Confidence 9999999999986 4689999999999 99999 8999999886
No 9
>KOG0861|consensus
Probab=95.91 E-value=0.21 Score=38.05 Aligned_cols=97 Identities=21% Similarity=0.199 Sum_probs=63.2
Q ss_pred CeEEEEEEEeCCC--CeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725 1 MTVYNFYLFDSFG--TLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT 78 (143)
Q Consensus 1 M~iy~~~I~~r~g--~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T 78 (143)
|.||++.|++..+ .-+....+.- +.-++=.....--+|.|..+.++++..|. ...+++-++|++|+|+-+.
T Consensus 1 Mki~sl~V~~~~~~~~~ll~~a~dl---s~FsfFqRssV~Efm~F~sktvaeRt~~g----~rqsvk~~~Y~~h~yvrnd 73 (198)
T KOG0861|consen 1 MKIYSLSVLHKGTSDVKLLKTASDL---SSFSFFQRSSVQEFMTFISKTVAERTGPG----QRQSVKHEEYLVHVYVRND 73 (198)
T ss_pred CceEEEEEEeeCCcchhhhhhhccc---ccccceeeccHHHHHHHHHHHHHHhcCcc----cccccccceeEEEEEEecC
Confidence 8999999999833 2222222211 00000111223345667778888888774 4678999999999999999
Q ss_pred ceEEEEEecCCch--hHHHHHHHHHHhhh
Q psy2725 79 GLKFVLNTDVQAQ--DVRKFLASVYSKVY 105 (143)
Q Consensus 79 g~KFvl~td~~~~--~i~~~l~~iy~~lY 105 (143)
|+-=|+++|..-+ ..-.+|++|- +-|
T Consensus 74 gL~~V~~~D~eYP~rvA~tLL~kvl-d~~ 101 (198)
T KOG0861|consen 74 GLCGVLIADDEYPVRVAFTLLNKVL-DEF 101 (198)
T ss_pred CeeEEEEecCcCchhHHHHHHHHHH-HHH
Confidence 9999999998643 3445566665 444
No 10
>PF01217 Clat_adaptor_s: Clathrin adaptor complex small chain; InterPro: IPR022775 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the small sigma and mu subunits of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and the zeta and delta subunits of various coatomer (COP) adaptors. The small sigma subunit of AP proteins have been characterised in several species [, , , ]. The sigma subunit plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes. The zeta subunit of coatomers (zeta-COP) is required for coatomer binding to Golgi membranes and for coat-vesicle assembly [, ]. More information about these proteins can be found at Protein of the Month: Clathrin [].; PDB: 1W63_W 2JKR_I 2VGL_S 2JKT_I 2XA7_S 2HF6_A 3TJZ_C.
Probab=95.64 E-value=0.48 Score=34.00 Aligned_cols=91 Identities=19% Similarity=0.394 Sum_probs=56.1
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
||.++.|+|++|++++.|-|... ..++.+.+..-+. .+....+ ....+ +..+++++ .|.--+++
T Consensus 1 MI~~i~i~n~~G~~i~~k~y~~~------~~~~~~~~~~~~~------~~~~~~~~~~~~i--~~~~~~~~-vy~~~~dl 65 (141)
T PF01217_consen 1 MIKAILILNSQGKRILSKYYRDV------SEEERQKLFEKFI------KKKSSRNSKQSPI--FEHDNYRI-VYKRYSDL 65 (141)
T ss_dssp SEEEEEEEETTSEEEEEEESSTS------TSHHHHHHHHHHH------HHHHTSSSSSTSE--EEETTEEE-EEEEETTE
T ss_pred CEEEEEEEcCCCCEEEehhcCCc------cHHHHHHHHHHHH------HHHHhccccccee--eeccccee-eeEeeccE
Confidence 57899999999999999999431 1223222222221 1222221 11222 34455555 66677899
Q ss_pred EEEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725 81 KFVLNTDVQAQD--VRKFLASVYSKVYVEY 108 (143)
Q Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (143)
-|+++++.++.+ +-++++.+. ++.-+|
T Consensus 66 ~~~~v~~~~eNel~~~e~l~~~v-~~l~~~ 94 (141)
T PF01217_consen 66 YFVVVGDENENELLLLEFLHRLV-EVLDDY 94 (141)
T ss_dssp EEEEEESSTSBHHHHHHHHHHHH-HHHHHH
T ss_pred EEEEEeecccchHHHHHHHHHhh-hhhhhh
Confidence 999999987654 466777777 776664
No 11
>PF03164 Mon1: Trafficking protein Mon1; InterPro: IPR004353 Members of this family have been called SAND proteins [] although these proteins do not contain a SAND domain. In Saccharomyces cerevisiae a protein complex of Mon1 and Ccz1 functions with the small GTPase Ypt7 to mediate vesicle trafficking to the vacuole [, ]. The Mon1/Ccz1 complex is conserved in eukaryotic evolution and members of this family (previously known as DUF254) are distant homologues to domains of known structure that assemble into cargo vesicle adapter (AP) complexes [, ].
Probab=95.32 E-value=0.37 Score=41.06 Aligned_cols=85 Identities=19% Similarity=0.308 Sum_probs=61.8
Q ss_pred EEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEE
Q psy2725 5 NFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVL 84 (143)
Q Consensus 5 ~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl 84 (143)
.|+|+..+|.|||.+. +. ++..--+.|++.++-.+.+.-. +.++.+..++.++.+ ..-+.+-+|.
T Consensus 13 h~fIlS~AGKPIysr~-G~--------e~~l~~~~g~~~aiiS~~~~~~-----d~l~~i~~~~~~ivf-l~r~pl~lv~ 77 (415)
T PF03164_consen 13 HFFILSSAGKPIYSRY-GD--------EDKLSSLMGVIQAIISFFQSNG-----DELRSIRAGDHRIVF-LNRGPLILVA 77 (415)
T ss_pred eEEEECCCCceeEEec-CC--------hHHHHHHHHHHHHHHHHHHhCC-----CcEEEEEeCCEEEEE-EecCCEEEEE
Confidence 4789999999999986 21 3344456788888776665322 468888888888884 4588999999
Q ss_pred EecCCc--hhHHHHHHHHHHhh
Q psy2725 85 NTDVQA--QDVRKFLASVYSKV 104 (143)
Q Consensus 85 ~td~~~--~~i~~~l~~iy~~l 104 (143)
++...+ ..++.-|+-+|..+
T Consensus 78 vS~~~e~~~~l~~qL~~ly~qi 99 (415)
T PF03164_consen 78 VSKTGESESQLRKQLDYLYSQI 99 (415)
T ss_pred EcCCcCCHHHHHHHHHHHHHHH
Confidence 987654 45788888888443
No 12
>PF13774 Longin: Regulated-SNARE-like domain; PDB: 1IOU_A 3BW6_A 1H8M_A 3EGX_C 2NUP_C 3EGD_C 2NUT_C 3KYQ_A 1IFQ_B 2VX8_D ....
Probab=92.87 E-value=1.2 Score=29.02 Aligned_cols=58 Identities=19% Similarity=0.426 Sum_probs=43.1
Q ss_pred HHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725 46 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVE 107 (143)
Q Consensus 46 ~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~ 107 (143)
+.+.+++.+.+ ..-.++..++|.+|++. ..|+-++++||...+ -.=.+|++|. +.|.+
T Consensus 3 ~~il~~i~~~~--~~k~s~~~~~~~fh~~~-~~~i~~~citd~~~~~r~aF~fL~~i~-~~F~~ 62 (83)
T PF13774_consen 3 RKILKRIPPNG--NSKMSYESGNYVFHYLV-EDGIAYLCITDKSYPKRVAFAFLEEIK-QEFIQ 62 (83)
T ss_dssp HHHHHTS-TTS--ESEEEEEETTEEEEEEE-ETTEEEEEEEETTS-HHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhcCCCC--CCeEEEEECCEEEEEEE-cCCeEEEEEEcCCCCcchHHHHHHHHH-HHHHH
Confidence 45677887643 24567889999999999 999999999998754 3556778888 66665
No 13
>PF08217 DUF1712: Fungal domain of unknown function (DUF1712); InterPro: IPR013176 The function of this fungal family of proteins is unknown.
Probab=77.31 E-value=46 Score=29.99 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=68.3
Q ss_pred chhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEec-CC--------chhHHHHHHHHHH
Q psy2725 32 EEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTD-VQ--------AQDVRKFLASVYS 102 (143)
Q Consensus 32 ~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td-~~--------~~~i~~~l~~iy~ 102 (143)
.|+.....|+.-|+-.|++..++..+ -..+.|+.-++-.++--.|+++++..+ +. ...++..|++.|
T Consensus 32 ~neql~~IGL~qglv~Ft~~Fs~~~~---~~~I~T~K~r~v~~e~Ep~~Wi~l~I~~~~~~~~~~~~~~~L~~~L~~~Y- 107 (604)
T PF08217_consen 32 LNEQLRQIGLAQGLVSFTRTFSPDDP---CDSIHTEKSRIVFYEPEPGFWIVLSINLPKEQSTKDGPEQYLLSVLKQAY- 107 (604)
T ss_pred HHHHHHHhhHHHHHHHHHHhcCCCCc---ccceeecceEEEEEEecCCEEEEEEEecCcCCccccchHHHHHHHHHHHH-
Confidence 56666788999999999999998653 355889999999999999999988766 11 123678888888
Q ss_pred hhhhhhhhcCCCCCCCCCccchhHHHHHHHHHH
Q psy2725 103 KVYVEYVVKNPLINPREPIKSDLFQNALDALVK 135 (143)
Q Consensus 103 ~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~ 135 (143)
+.|.= ..-||-..-. .-+.|..+++.+..
T Consensus 108 ~~F~L--~hGsfs~~l~--~r~~L~~~L~~F~~ 136 (604)
T PF08217_consen 108 SMFRL--FHGSFSSLLE--GREKLKDRLEDFFS 136 (604)
T ss_pred HHHHH--HcCCHHHhcc--cHHHHHHHHHHHHH
Confidence 77764 2344433322 55566666666543
No 14
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=69.72 E-value=4.6 Score=19.40 Aligned_cols=11 Identities=9% Similarity=0.709 Sum_probs=9.9
Q ss_pred CeEEEEEEEeC
Q psy2725 1 MTVYNFYLFDS 11 (143)
Q Consensus 1 M~iy~~~I~~r 11 (143)
|.++|++++++
T Consensus 1 MG~fSiFVI~~ 11 (19)
T PF08253_consen 1 MGMFSIFVINT 11 (19)
T ss_pred CceEEEEEEEe
Confidence 88999999987
No 15
>KOG0936|consensus
Probab=59.53 E-value=71 Score=24.01 Aligned_cols=81 Identities=14% Similarity=0.151 Sum_probs=43.7
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceE
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 81 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~K 81 (143)
||+.+.|+|.+|.|=.-+=|.+- +.+-+++++-+++|.+..-.+..+.-- ++=..+-.+++++-+=.=+| +-
T Consensus 1 MI~AvlifNn~gkPRL~KFY~p~-----~~~~Qq~lir~vf~lvs~R~~n~~nFL--e~~~l~g~~d~rlIYrhYAT-LY 72 (182)
T KOG0936|consen 1 MIKAVLIFNNKGKPRLVKFYTPV-----DEEKQQQLIREVFHLVSKRPDNVCNFL--EGNSLIGGSDNRLIYRHYAT-LY 72 (182)
T ss_pred CeeEEEEecCCCCcceeeecCcC-----ChHHHHHHHHHHHHHHHcCCchHhhhh--ccccccCCccceeehheeee-EE
Confidence 58999999999999887777642 112344566677765433211111100 00011222344443333233 56
Q ss_pred EEEEecCCc
Q psy2725 82 FVLNTDVQA 90 (143)
Q Consensus 82 Fvl~td~~~ 90 (143)
||++.|.++
T Consensus 73 FvfvvD~sE 81 (182)
T KOG0936|consen 73 FVFVVDSSE 81 (182)
T ss_pred EEEEEcCCc
Confidence 899998864
No 16
>PF03259 Robl_LC7: Roadblock/LC7 domain; InterPro: IPR004942 This family includes proteins that are about 100 amino acids long and have been shown to be related []. Members of this family of proteins are associated with both flagellar outer arm dynein and Drosophila and rat brain cytoplasmic dynein. It is proposed that roadblock/LC7 family members may modulate specific dynein functions []. This family also includes Golgi-associated MP1 adapter protein (Q9Y2Q5 from SWISSPROT) and MglB from Myxococcus xanthus (Q50883 from SWISSPROT), a protein involved in gliding motility []. However the family also includes members from non-motile bacteria such as Streptomyces coelicolor, suggesting that the protein may play a structural or regulatory role.; PDB: 2B95_B 1Z09_A 2E8J_B 2HZ5_B 3KYE_A 2ZL1_B 1SKO_B 3CPT_B 1VEU_B 1VET_B ....
Probab=58.98 E-value=34 Score=21.68 Aligned_cols=63 Identities=11% Similarity=0.153 Sum_probs=36.1
Q ss_pred EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHH----HHHHhHHHHHHhhCCCCCCCcee--EeeccceEEEEEec
Q psy2725 3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMY----GMLFSLKSFVSKISPLDSKTGFL--SYKTTKYALHLYET 76 (143)
Q Consensus 3 iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~----g~l~sL~~i~~kls~~~~~~~~~--~~~t~~ykl~~~~T 76 (143)
+-...|++++|.+|...... .++...++ +++-+.+.+.+.+.. +.++ .+++++.++....-
T Consensus 15 v~~~~l~~~dG~~i~~~~~~---------~~~~~~~aa~~a~~~~~~~~~~~~l~~----~~~~~v~i~~~~~~i~i~~~ 81 (91)
T PF03259_consen 15 VRGAVLVDKDGLVIASSGID---------DDDAEKLAAMAASLLAAAEKLAKELGE----GELEQVRIETEKGEIIITPV 81 (91)
T ss_dssp EEEEEEEETTSEEEEETSSS---------HHHHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEEEEEESSEEEEEEEC
T ss_pred eeEEEEEcCCCCEEEEecCC---------cccHHHHHHHHHHHHHHHHHHHHHhCC----CCcEEEEEEECCCEEEEEEc
Confidence 56789999999999983222 22333333 444455666666651 2343 45666666555444
Q ss_pred CC
Q psy2725 77 PT 78 (143)
Q Consensus 77 ~T 78 (143)
..
T Consensus 82 ~~ 83 (91)
T PF03259_consen 82 GD 83 (91)
T ss_dssp ST
T ss_pred CC
Confidence 33
No 17
>PF13585 CHU_C: C-terminal domain of CHU protein family; PDB: 3EIF_A 1XF1_B.
Probab=58.84 E-value=11 Score=24.86 Aligned_cols=18 Identities=17% Similarity=0.682 Sum_probs=12.6
Q ss_pred EEEEEEEeCCCCeeEEee
Q psy2725 3 VYNFYLFDSFGTLLYYAE 20 (143)
Q Consensus 3 iy~~~I~~r~g~~iy~~~ 20 (143)
-+.+.|+||-|+.||+.+
T Consensus 28 ~~~~~IynrwG~~Vf~~~ 45 (87)
T PF13585_consen 28 NYSLTIYNRWGELVFESN 45 (87)
T ss_dssp EEEEEEE-SSS-EEEE--
T ss_pred eeEEEEEeCCCcEEEEEC
Confidence 478999999999999764
No 18
>PF04370 DUF508: Domain of unknown function (DUF508) ; InterPro: IPR007465 This is a family of uncharacterised proteins from Caenorhabditis elegans.
Probab=55.59 E-value=43 Score=24.64 Aligned_cols=66 Identities=20% Similarity=0.262 Sum_probs=46.8
Q ss_pred EEecCCceEEEEEecCC---------------chhHHHHHHHHHHhhhhhhhhcCCCCCC-------------CCCccch
Q psy2725 73 LYETPTGLKFVLNTDVQ---------------AQDVRKFLASVYSKVYVEYVVKNPLINP-------------REPIKSD 124 (143)
Q Consensus 73 ~~~T~Tg~KFvl~td~~---------------~~~i~~~l~~iy~~lYv~~v~kNPfy~~-------------~~pI~s~ 124 (143)
-|+|--++|||+++-.- +--++++.-.-| +++.+- ++|-=..| ..|+...
T Consensus 48 K~V~MVhVKFilLh~Dv~kRrvQS~F~DEF~SDc~LqdVi~nF~-qlc~Rq-Lr~~~f~PRlsYCIGeln~~nSKPv~~~ 125 (156)
T PF04370_consen 48 KYVTMVHVKFILLHRDVFKRRVQSCFTDEFPSDCLLQDVIINFH-QLCSRQ-LRNQEFNPRLSYCIGELNYKNSKPVLKS 125 (156)
T ss_pred cEEEEEEEEEEEEehHHHHHHHHHhhcccCcccCcHHHHHHHHH-HHHHHH-HhccccCcceeeeeccccccCCCcchHH
Confidence 36666789999998641 123677777788 888884 54433332 2688888
Q ss_pred hHHHHHHHHHHhcccc
Q psy2725 125 LFQNALDALVKESSIS 140 (143)
Q Consensus 125 ~F~~~v~~~~~~~~~~ 140 (143)
...+.+.++++.+.++
T Consensus 126 Dl~KtLAqLA~t~si~ 141 (156)
T PF04370_consen 126 DLGKTLAQLAATNSIV 141 (156)
T ss_pred HHHHHHHHHhccCceE
Confidence 9999999999887764
No 19
>COG5143 SNC1 Synaptobrevin/VAMP-like protein [Intracellular trafficking and secretion]
Probab=54.97 E-value=84 Score=24.24 Aligned_cols=61 Identities=18% Similarity=0.270 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCc----------hhHHHHHHHHHHhhhhh
Q psy2725 45 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQA----------QDVRKFLASVYSKVYVE 107 (143)
Q Consensus 45 L~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~----------~~i~~~l~~iy~~lYv~ 107 (143)
++.+-..++|..++ ...+++++|-.|.+.-.+|+.++++++... ....+++...+.+.|.|
T Consensus 34 v~~~l~~~~~~~a~--~~~ies~~~~~~~~~~s~gi~y~~~~~~e~p~~la~~~~~~~~~~~~~s~~~~~~~d 104 (190)
T COG5143 34 VKEVLRFLSKTSAS--RASIESGDYFFHYLKMSSGIVYVPISDKEYPNKLAYGYLNSIATEFLKSSALEQLID 104 (190)
T ss_pred HHHHHHHhcccccc--hhccccCceEEEEEecCCCceeEEecccccchhhhhHHHHhhccHhhhhhhHhhccc
Confidence 44455566665442 457788999999999999999999999753 22345555555555655
No 20
>PF12321 DUF3634: Protein of unknown function (DUF3634); InterPro: IPR022090 This family of proteins is found in bacteria. Proteins in this family are typically between 103 and 114 amino acids in length.
Probab=53.07 E-value=57 Score=22.85 Aligned_cols=65 Identities=11% Similarity=0.282 Sum_probs=42.9
Q ss_pred EEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEE
Q psy2725 6 FYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLN 85 (143)
Q Consensus 6 ~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~ 85 (143)
+..++|+|.++|.-.|...+.. ...-+.=.++.|..++|+++--- +-.|-+|.+.+|+|.++-
T Consensus 15 Lv~~~r~~~~vf~i~f~dG~l~----~~KG~iP~~F~~~c~dIa~~~~~-------------~G~ik~~r~~~g~rL~fS 77 (108)
T PF12321_consen 15 LVFVDRRGLPVFEIHFKDGRLR----VHKGHIPPGFLHNCRDIARRYPF-------------RGTIKVYRQRGGVRLHFS 77 (108)
T ss_pred HHHccccCceEEEEEEECCcEE----EEcCCCChHHHHHHHHHHHhCCC-------------cEEEEEEEeCCceEEEEe
Confidence 4457899999999999753210 01112224677888888765422 345888999999997765
Q ss_pred ec
Q psy2725 86 TD 87 (143)
Q Consensus 86 td 87 (143)
-+
T Consensus 78 ~~ 79 (108)
T PF12321_consen 78 RS 79 (108)
T ss_pred CC
Confidence 44
No 21
>PF08465 Herpes_TK_C: Thymidine kinase from Herpesvirus C-terminal; InterPro: IPR013672 This domain is found towards the C terminus in Herpesvirus Thymidine kinases. ; GO: 0004797 thymidine kinase activity, 0005524 ATP binding
Probab=40.71 E-value=19 Score=19.94 Aligned_cols=15 Identities=33% Similarity=0.966 Sum_probs=10.9
Q ss_pred HHHhhhhhhhhcCCCC
Q psy2725 100 VYSKVYVEYVVKNPLI 115 (143)
Q Consensus 100 iy~~lYv~~v~kNPfy 115 (143)
++.++|.+ +++||--
T Consensus 9 lW~~IY~q-i~kn~aI 23 (33)
T PF08465_consen 9 LWTEIYTQ-ILKNPAI 23 (33)
T ss_pred HHHHHHHH-HHhCccc
Confidence 34567788 8999863
No 22
>PF03288 Pox_D5: Poxvirus D5 protein-like; InterPro: IPR004968 This domain is found at the C terminus of phage P4 alpha protein and related proteins. Phage P4 DNA replication depends on the product of the alpha gene, which has origin recognition ability, DNA helicase activity, and DNA primase activity. The structure of the protein can be summarised as follows: The N terminus provides the primase activity, the central region is the helicase/nucleoside triphosphatase domain and the ori DNA recognition resides in the C-terminal 1/3 of the protein []. The domain is also found at the C terminus of a number of proteins from orthopox viruses including vaccinia virus D5. D5 encodes a 90kDa protein that is transiently expressed at early times after infection. It has an nucleoside triphosphatase activity which is independent of common nucleic acid cofactors and it can hydrolyse all the common ribo- and deoxyribonucleoside triphosphates to diphosphates in the presence of a divalent cation [].; PDB: 1KA8_E.
Probab=37.07 E-value=47 Score=21.30 Aligned_cols=35 Identities=23% Similarity=0.430 Sum_probs=23.8
Q ss_pred HHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHh
Q psy2725 98 ASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKE 136 (143)
Q Consensus 98 ~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~ 136 (143)
..+| ++|..++-.|=... ++....|.+++++.+..
T Consensus 25 ~~lY-~~Y~~wc~~ng~~~---~ls~~~F~~~L~~~~~~ 59 (86)
T PF03288_consen 25 KDLY-DAYKEWCEENGYKP---PLSKRKFGKELKQYFPE 59 (86)
T ss_dssp TBHH-HHHHHHHHHTT-S-------HHHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHhCCCc---ccCHHHHHHHHHHHhhh
Confidence 5677 77777777775544 68999999999998754
No 23
>PF14120 YhzD: YhzD-like protein
Probab=36.82 E-value=39 Score=21.25 Aligned_cols=23 Identities=22% Similarity=0.355 Sum_probs=21.3
Q ss_pred CeEEEEEEEeCCCCeeEEeeecc
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNR 23 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~ 23 (143)
|..|.+..|.++|.-|....|..
T Consensus 1 M~~Y~lTaFe~~Ge~lldE~feA 23 (61)
T PF14120_consen 1 MKTYFLTAFEKSGEKLLDETFEA 23 (61)
T ss_pred CCceEEEEECCCCchhhhcceec
Confidence 77899999999999999999976
No 24
>PF10407 Cytokin_check_N: Cdc14 phosphatase binding protein N-terminus ; InterPro: IPR018844 Cytokinesis in yeasts involves a family of proteins whose essential function is to bind Cdc14-family phosphatase and prevent this from being sequestered and inhibited in the nucleolus. This is the highly conserved N terminus of a family of proteins which act as cytokinesis checkpoint controls by allowing cells to cope with cytokinesis defects. These proteins are required for rDNA silencing and mini-chromosome maintenance [].
Probab=36.78 E-value=47 Score=21.57 Aligned_cols=11 Identities=36% Similarity=0.329 Sum_probs=8.9
Q ss_pred eEEEEEecCCc
Q psy2725 80 LKFVLNTDVQA 90 (143)
Q Consensus 80 ~KFvl~td~~~ 90 (143)
-||+.+|+++.
T Consensus 3 kKFLhlt~~~~ 13 (73)
T PF10407_consen 3 KKFLHLTDPNN 13 (73)
T ss_pred cEEEEEeCCCC
Confidence 48999999853
No 25
>COG5030 APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion]
Probab=35.67 E-value=1.2e+02 Score=22.39 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=39.2
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCC-CCceeEeeccceEEEEEecCCce
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDS-KTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~-~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
+|+.+.|+||+|.|=.-+=|.+- +..+..+++..+ |+ -++..++ ...+--++-+ |+ .|.--.++
T Consensus 1 ~i~~vli~nrqgk~RL~K~yt~~-----~~~e~~kli~~i-~~------lIs~R~~ke~N~~e~k~~--ki-VYrrYA~L 65 (152)
T COG5030 1 MIKFVLIFNRQGKPRLVKWYTPV-----SDPEQAKLIADI-YE------LISARKPKESNFIEGKNE--KI-VYRRYATL 65 (152)
T ss_pred CeEEEEEEcCCCceeeeEeeccC-----CcHHHHHHHHHH-HH------HHHcCCchhcccccccCc--EE-EeeecCcE
Confidence 57899999999998877766432 113344443332 22 2232221 1222222221 22 22333578
Q ss_pred EEEEEecCCc
Q psy2725 81 KFVLNTDVQA 90 (143)
Q Consensus 81 KFvl~td~~~ 90 (143)
=|+...|+.+
T Consensus 66 yF~f~Vd~~d 75 (152)
T COG5030 66 YFVFGVDNDD 75 (152)
T ss_pred EEEEEEcCCC
Confidence 8888888763
No 26
>PF08800 VirE_N: VirE N-terminal domain; InterPro: IPR014907 This domain is associated with the N terminus of Virulence E proteins. The function of the domain is unknown.
Probab=35.42 E-value=1.3e+02 Score=21.47 Aligned_cols=23 Identities=26% Similarity=0.596 Sum_probs=17.4
Q ss_pred ceEEEEEecCCc--eEEEEEecCCc
Q psy2725 68 KYALHLYETPTG--LKFVLNTDVQA 90 (143)
Q Consensus 68 ~ykl~~~~T~Tg--~KFvl~td~~~ 90 (143)
.|-+.+|.|||| +|.++-.+...
T Consensus 57 p~t~~~f~SpSG~GvKi~v~~~~~~ 81 (136)
T PF08800_consen 57 PYTLAAFVSPSGRGVKIIVPFDYPD 81 (136)
T ss_pred CcEEEEEEcCCCCeEEEEEEecCCC
Confidence 455899999986 89888776543
No 27
>COG2122 Uncharacterized conserved protein [Function unknown]
Probab=32.96 E-value=91 Score=24.96 Aligned_cols=53 Identities=19% Similarity=0.291 Sum_probs=33.7
Q ss_pred EEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCC-CCCCccchhHHHHHHHHHHh
Q psy2725 83 VLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLIN-PREPIKSDLFQNALDALVKE 136 (143)
Q Consensus 83 vl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~-~~~pI~s~~F~~~v~~~~~~ 136 (143)
.+-+|.... ...+.... |+..--+||.+||-+. +-.||.|+.|...+-+.+..
T Consensus 25 ~i~ad~~~~~~aa~~aV~~-~R~~Le~yI~~nP~f~ts~~pi~~~e~~peivrrM~~ 80 (256)
T COG2122 25 TIRADDEAHEKAAEEAVLR-HRSELEDYILKNPEFLTSLEPIECREFAPEIVRRMSR 80 (256)
T ss_pred EEEecCHHHHHHHHHHHHH-HHHHHHHHHHhCcchhcccceeeccccCcHHHHHHHH
Confidence 344555432 23333332 3355678999999665 56899999998877766643
No 28
>KOG0862|consensus
Probab=30.19 E-value=2.7e+02 Score=21.89 Aligned_cols=84 Identities=19% Similarity=0.236 Sum_probs=52.5
Q ss_pred HHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch------hHHHHHHHHHHhhhhhhhhcCCCCCCCC
Q psy2725 46 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ------DVRKFLASVYSKVYVEYVVKNPLINPRE 119 (143)
Q Consensus 46 ~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~------~i~~~l~~iy~~lYv~~v~kNPfy~~~~ 119 (143)
+.+..++++..+ ..-+.+|+.|.+|+. .-+|+=+++++|..-+ -+.++=+|.. ..|-+ -..+|-..|-.
T Consensus 38 K~L~kkLs~~s~--~r~Sietg~f~fHfl-i~~~Vcylvicd~~yP~kLAF~YLedL~~EF~-~~~~~-~~~~~~~RPY~ 112 (216)
T KOG0862|consen 38 KSLFKKLSQQSP--TRCSIETGPFVFHFL-IESGVCYLVICDKSYPRKLAFSYLEDLAQEFD-KSYGK-NIIQPASRPYA 112 (216)
T ss_pred HHHHHhccCCCC--cccccccCCeEEEEE-ecCCEEEEEEecCCCcHHHHHHHHHHHHHHHH-Hhccc-ccCCccCCCee
Confidence 444567877532 456788999988755 4689999999997642 2333444444 44555 23355545555
Q ss_pred CccchhHHHHHHHHH
Q psy2725 120 PIKSDLFQNALDALV 134 (143)
Q Consensus 120 pI~s~~F~~~v~~~~ 134 (143)
=|+=+.|.+++++..
T Consensus 113 FieFD~~IQk~Kk~y 127 (216)
T KOG0862|consen 113 FIEFDTFIQKTKKRY 127 (216)
T ss_pred EEehhHHHHHHHHHh
Confidence 577777777776543
No 29
>KOG4497|consensus
Probab=28.74 E-value=36 Score=28.86 Aligned_cols=22 Identities=36% Similarity=0.495 Sum_probs=19.1
Q ss_pred ccceEEEEEecCCceEEEEEec
Q psy2725 66 TTKYALHLYETPTGLKFVLNTD 87 (143)
Q Consensus 66 t~~ykl~~~~T~Tg~KFvl~td 87 (143)
.=+||+++||-.+|+|||--..
T Consensus 199 ~Leykv~aYe~~lG~k~v~wsP 220 (447)
T KOG4497|consen 199 VLEYKVYAYERGLGLKFVEWSP 220 (447)
T ss_pred hhhheeeeeeeccceeEEEecc
Confidence 3489999999999999998665
No 30
>KOG2740|consensus
Probab=28.01 E-value=26 Score=29.85 Aligned_cols=22 Identities=23% Similarity=0.439 Sum_probs=20.1
Q ss_pred eEEEEEEEeCCCCeeEEeeecc
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNR 23 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~ 23 (143)
|+.|+|++|-+|.++++++|..
T Consensus 1 mi~siflidtsg~l~lek~~~g 22 (418)
T KOG2740|consen 1 MILSIFLIDTSGDLLLEKHLKG 22 (418)
T ss_pred CeeEEEEEcCCchhhhhHhhCC
Confidence 5789999999999999999973
No 31
>PF04556 DpnII: DpnII restriction endonuclease; InterPro: IPR007637 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry is found in type II restriction enzymes such as DpmII (3.1.21.4 from EC), which recognises the double-stranded unmethylated sequence GATC and cleave before G-1 [], where it encompasess the full length of the protein. It is also found in a number of proteins of unknown function, where it is located adjacent to a DNA adenine-specific methyltransferase domain (IPR012327 from INTERPRO).; GO: 0003677 DNA binding, 0009036 Type II site-specific deoxyribonuclease activity, 0009307 DNA restriction-modification system
Probab=27.11 E-value=72 Score=26.15 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=24.1
Q ss_pred cCCceEEEEEecCC-----chhHHHHHHHHHHhhhhhhhh
Q psy2725 76 TPTGLKFVLNTDVQ-----AQDVRKFLASVYSKVYVEYVV 110 (143)
Q Consensus 76 T~Tg~KFvl~td~~-----~~~i~~~l~~iy~~lYv~~v~ 110 (143)
+..|++||-+||.. ...+++.|..|. .+|-=..+
T Consensus 239 ~~~~~~FvWITDG~GW~sak~~L~Eaf~~i~-~iyNl~~l 277 (286)
T PF04556_consen 239 SIDGFEFVWITDGKGWKSAKNPLREAFDHID-HIYNLKML 277 (286)
T ss_pred hcCCcEEEEEEeChhHHhhHhHHHHHHHhhh-HheeHHHH
Confidence 36899999999974 356777777776 56543333
No 32
>COG5541 RET3 Vesicle coat complex COPI, zeta subunit [Posttranslational modification, protein turnover, chaperones]
Probab=26.95 E-value=2.8e+02 Score=20.95 Aligned_cols=101 Identities=15% Similarity=0.256 Sum_probs=57.2
Q ss_pred EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCC--CCceeEeeccceEEEEEecCCce
Q psy2725 3 VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDS--KTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 3 iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~--~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|-.+.|.+.+|.-||-+-|.++ .. ++-..+++..+--=+.|+.++..+.. .+.+..| .=++--+.+.--+
T Consensus 8 v~a~LilDsqGeriy~kyy~pp----h~-~eg~~~vFnsvkkekefek~l~eKt~k~~~~Il~f---~d~lV~~k~~~dv 79 (187)
T COG5541 8 VEALLILDSQGERIYRKYYQPP----HR-SEGHQLVFNSVKKEKEFEKKLAEKTAKDRESILMF---YDRLVMCKRLDDV 79 (187)
T ss_pred eeeeEEecCCccchhhhhcCCc----cc-ccccchhhcchhHHHHHHHHHHHHhhcCccceeeE---cceeeeeeeehhE
Confidence 5578999999999998888643 11 22222334333334445555543221 1222222 2355566667777
Q ss_pred EEEEEecCC--chhHHHHHHHHHHhhhhhhhhcCC
Q psy2725 81 KFVLNTDVQ--AQDVRKFLASVYSKVYVEYVVKNP 113 (143)
Q Consensus 81 KFvl~td~~--~~~i~~~l~~iy~~lYv~~v~kNP 113 (143)
-|.++.... +.-+.+.|++|- .+..= +++-|
T Consensus 80 ~~yiv~~meeNE~~l~q~f~~ir-~Al~l-i~k~~ 112 (187)
T COG5541 80 LLYIVSPMEENEPFLGQVFDEIR-AALIL-IVKTP 112 (187)
T ss_pred EEEEecccccccHHHHHHHHHHH-HHHHH-HHcCC
Confidence 777777654 445677777776 55544 45444
No 33
>KOG1273|consensus
Probab=26.15 E-value=4e+02 Score=22.61 Aligned_cols=49 Identities=16% Similarity=0.154 Sum_probs=35.5
Q ss_pred HHhHHHHHHhhCCCCC---CCceeEe--eccceEEEEEecCCceEEEEEecCCc
Q psy2725 42 LFSLKSFVSKISPLDS---KTGFLSY--KTTKYALHLYETPTGLKFVLNTDVQA 90 (143)
Q Consensus 42 l~sL~~i~~kls~~~~---~~~~~~~--~t~~ykl~~~~T~Tg~KFvl~td~~~ 90 (143)
.|-+.+++.|+.|+.- .+|-..+ .+..+.+|.||+.+|-=.=+++.++.
T Consensus 240 ~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg 293 (405)
T KOG1273|consen 240 EHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG 293 (405)
T ss_pred hHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch
Confidence 3667788899999742 2343333 46688999999999987777777763
No 34
>PHA00743 helix-turn-helix protein
Probab=22.73 E-value=92 Score=18.82 Aligned_cols=22 Identities=18% Similarity=0.522 Sum_probs=19.0
Q ss_pred chhHHHHHHHHHHhhhhhhhhcC
Q psy2725 90 AQDVRKFLASVYSKVYVEYVVKN 112 (143)
Q Consensus 90 ~~~i~~~l~~iy~~lYv~~v~kN 112 (143)
.+++|.+|.-|| ++=+|.++.|
T Consensus 5 D~~iReLLs~ih-eIKID~i~~~ 26 (51)
T PHA00743 5 DEDVRELLSIIH-EIKIDIITQS 26 (51)
T ss_pred HHHHHHHHHHHH-HHhhhhhccc
Confidence 468999999999 9999977755
No 35
>COG2213 MtlA Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism]
Probab=22.20 E-value=23 Score=30.55 Aligned_cols=24 Identities=21% Similarity=0.610 Sum_probs=20.9
Q ss_pred hhHHHHHHHHHHhhhhhhhhcCCCC
Q psy2725 91 QDVRKFLASVYSKVYVEYVVKNPLI 115 (143)
Q Consensus 91 ~~i~~~l~~iy~~lYv~~v~kNPfy 115 (143)
..+-.||--|| |+|-.||++||.-
T Consensus 247 A~iIHffGGIH-EIYFPyVLMkP~L 270 (472)
T COG2213 247 AAIIHFFGGIH-EIYFPYVLMKPRL 270 (472)
T ss_pred ceeeeeccccc-eEeehhhhcchHH
Confidence 35778999999 9999999999973
No 36
>COG4092 Predicted glycosyltransferase involved in capsule biosynthesis [Cell envelope biogenesis, outer membrane]
Probab=21.51 E-value=42 Score=27.68 Aligned_cols=28 Identities=11% Similarity=0.407 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhhhhhhhhcCCCCCC
Q psy2725 90 AQDVRKFLASVYSKVYVEYVVKNPLINP 117 (143)
Q Consensus 90 ~~~i~~~l~~iy~~lYv~~v~kNPfy~~ 117 (143)
...++++.+..|+.+|++..-.|||+++
T Consensus 51 d~~i~~~i~~~~~~~yl~~~s~~~F~s~ 78 (346)
T COG4092 51 DRLIRSYIDPMPRVLYLDFGSPEPFASE 78 (346)
T ss_pred HHHHHHHhccccceEEEecCCCccccch
Confidence 4689999999996699999999999995
No 37
>COG3260 Ni,Fe-hydrogenase III small subunit [Energy production and conversion]
Probab=21.43 E-value=1.8e+02 Score=21.49 Aligned_cols=39 Identities=18% Similarity=0.464 Sum_probs=34.8
Q ss_pred eeccceEEEEEecCCceEEEEEecCCchhHHHHHHHHHHh
Q psy2725 64 YKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSK 103 (143)
Q Consensus 64 ~~t~~ykl~~~~T~Tg~KFvl~td~~~~~i~~~l~~iy~~ 103 (143)
|..+.|.|+.--+|-.--.+|+|.+-...+++-++++| +
T Consensus 34 YDaErfgI~~v~sPRhADiLlVTG~vT~~~~e~lkk~Y-e 72 (148)
T COG3260 34 YDAERFGIKVVNSPRHADILLVTGAVTRQMREPLKKAY-E 72 (148)
T ss_pred cchHHheeEEeCCCccccEEEEeccccHHHHHHHHHHH-H
Confidence 45778899999999999999999999999999999999 5
No 38
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=20.84 E-value=54 Score=21.28 Aligned_cols=25 Identities=16% Similarity=0.409 Sum_probs=20.3
Q ss_pred HHHHHHHhhhhhhhhcCCCCCCCCCcc
Q psy2725 96 FLASVYSKVYVEYVVKNPLINPREPIK 122 (143)
Q Consensus 96 ~l~~iy~~lYv~~v~kNPfy~~~~pI~ 122 (143)
.++.+. ++|.+ ++.|||-.++..|.
T Consensus 43 ~~E~l~-e~Y~~-~~w~~F~~Lhnkin 67 (72)
T PF13198_consen 43 IIEPLF-ELYKD-WFWNPFNALHNKIN 67 (72)
T ss_pred HHHHHH-HHHHH-HHHHhHHHHhcccc
Confidence 677888 99999 88999987776664
No 39
>KOG4204|consensus
Probab=20.50 E-value=67 Score=25.33 Aligned_cols=35 Identities=17% Similarity=0.275 Sum_probs=29.2
Q ss_pred HHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725 99 SVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS 138 (143)
Q Consensus 99 ~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~ 138 (143)
++| +-+++ +|+++= ...|+-+-+..+|+.|++.+|
T Consensus 38 ~kY-~~FL~-im~d~k---a~~iD~~~vi~rv~eLfK~h~ 72 (231)
T KOG4204|consen 38 EKY-DEFLE-IMKDFK---AQRIDTPGVIARVKELLKGHP 72 (231)
T ss_pred HHH-HHHHH-HHHHHH---hccCCHHHHHHHHHHHHccCH
Confidence 478 88888 776654 458999999999999999987
No 40
>COG4918 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=20.19 E-value=66 Score=22.49 Aligned_cols=16 Identities=19% Similarity=0.223 Sum_probs=13.8
Q ss_pred EEeCCCCeeEEeeecc
Q psy2725 8 LFDSFGTLLYYAEWNR 23 (143)
Q Consensus 8 I~~r~g~~iy~~~~~~ 23 (143)
+++.+++|||.++|..
T Consensus 56 ~idsn~gPiyik~~~~ 71 (114)
T COG4918 56 SIDSNFGPIYIKDYGS 71 (114)
T ss_pred ccccCCCcEEEEecce
Confidence 5788999999999974
Done!