Query psy2725
Match_columns 143
No_of_seqs 115 out of 525
Neff 7.1
Searched_HMMs 29240
Date Fri Aug 16 23:37:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2725.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2725hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 100.0 7.9E-53 2.7E-57 308.6 16.5 142 1-142 1-142 (145)
2 3cue_C Transport protein parti 100.0 5.6E-48 1.9E-52 286.7 12.8 139 1-139 1-158 (159)
3 3cue_A Transport protein parti 100.0 3E-46 1E-50 287.7 18.0 135 1-138 1-219 (219)
4 2j3t_D Trafficking protein par 100.0 2.7E-43 9.2E-48 272.0 17.1 106 33-139 106-211 (219)
5 2j3w_A Sedlin, trafficking pro 100.0 4E-41 1.4E-45 245.5 16.0 134 1-138 3-140 (142)
6 3pr6_A Trapp-associated protei 99.9 1.8E-20 6.1E-25 138.5 14.4 108 5-118 12-133 (162)
7 3kyq_A YKT6, synaptobrevin hom 97.1 0.04 1.4E-06 41.3 14.9 99 1-107 2-104 (199)
8 2nut_C Vesicle-trafficking pro 96.2 0.24 8E-06 36.6 13.8 125 1-138 2-128 (196)
9 3bw6_A Synaptobrevin homolog Y 95.4 0.44 1.5E-05 33.6 15.0 98 1-106 5-106 (144)
10 1w63_Q Adapter-related protein 95.2 0.49 1.7E-05 33.8 11.7 91 2-108 1-94 (158)
11 2vgl_S AP-2 complex subunit si 92.3 2 6.8E-05 29.8 13.0 91 2-108 1-94 (142)
12 4b93_A Vesicle-associated memb 92.0 2.7 9.3E-05 30.7 12.4 84 48-138 33-119 (189)
13 2vgl_M AP-2 complex subunit MU 89.2 4.7 0.00016 33.1 11.0 90 2-108 1-92 (435)
14 1w63_M Adaptor-related protein 88.7 0.74 2.5E-05 37.8 5.8 92 1-108 1-94 (423)
15 2vx8_A Nucleoporin-like protei 86.3 5.7 0.00019 28.7 8.7 58 45-107 72-131 (169)
16 3tjz_C Coatomer subunit zeta-1 78.2 15 0.00052 25.8 12.2 91 2-108 12-104 (153)
17 4er8_A Tnparep for protein; pr 50.5 63 0.0021 22.7 7.3 72 69-141 48-123 (165)
18 3cpt_A Mitogen-activated prote 49.0 67 0.0023 22.6 9.4 82 2-90 37-119 (143)
19 2wx3_A MRNA-decapping enzyme 1 47.1 11 0.00037 22.1 1.8 15 94-109 28-42 (51)
20 2x5c_A Hypothetical protein OR 41.9 42 0.0014 22.2 4.4 36 68-104 61-103 (131)
21 3t12_B Gliding protein MGLB; G 40.3 88 0.003 21.5 11.9 80 5-90 28-110 (136)
22 3bua_E HSNM1B, DNA cross-LINK 35.0 9.8 0.00034 20.3 0.3 31 103-134 5-35 (36)
23 4afi_A AP-3 complex subunit de 33.6 1.3E+02 0.0044 21.4 13.8 85 46-137 83-170 (173)
24 2wx4_A DCP1, decapping protein 32.3 16 0.00054 20.9 1.0 14 94-108 26-39 (46)
25 2v2f_A Penicillin binding prot 21.5 59 0.002 15.4 1.9 14 6-19 7-20 (26)
26 1j3w_A Giding PROTEIN-MGLB; gl 21.2 2.2E+02 0.0074 19.9 10.9 93 5-107 31-135 (163)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=7.9e-53 Score=308.60 Aligned_cols=142 Identities=54% Similarity=0.930 Sum_probs=132.1
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|++||||||||+|+|||+++|.++++++.+.+|+.++++|++|||++|++|++|.++++|+++++|++|++|||+|+||+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 99999999999999999999987544343337889999999999999999999987778999999999999999999999
Q ss_pred EEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcccccc
Q psy2725 81 KFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESSISLK 142 (143)
Q Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~~~~~ 142 (143)
||||+||++++++|++|++||+++|+|||+|||||++|+||+|++||.+|+++++++++|..
T Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~~f~~ 142 (145)
T 2j3t_C 81 KVVMNTDLGVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLPFFSA 142 (145)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTSTTCCC
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCccchh
Confidence 99999999999999999999988999999999999999999999999999999999999864
No 2
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.6e-48 Score=286.69 Aligned_cols=139 Identities=33% Similarity=0.579 Sum_probs=123.6
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccC------CCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEE
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKH------SGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLY 74 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~------~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~ 74 (143)
|+|||||||||+|+|||+++|.+.++ +++..+|+.++++|++|||++|++|++|.+..++|.+++|++||+|||
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 99999999999999999999976321 112246789999999999999999999987778999999999999999
Q ss_pred ecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcCC-----CCCCC--------CCccchhHHHHHHHHHHhccc
Q psy2725 75 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNP-----LINPR--------EPIKSDLFQNALDALVKESSI 139 (143)
Q Consensus 75 ~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNP-----fy~~~--------~pI~s~~F~~~v~~~~~~~~~ 139 (143)
||+||+||||+||++++++|++|++||+++|||||+||| ||+++ |||+|++||.+|++++++++.
T Consensus 81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~~ 158 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMVN 158 (159)
T ss_dssp CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC--
T ss_pred EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhccC
Confidence 999999999999999999999999999339999999999 99999 999999999999999998874
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3e-46 Score=287.72 Aligned_cols=135 Identities=26% Similarity=0.475 Sum_probs=123.6
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC------------------------
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD------------------------ 56 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~------------------------ 56 (143)
|+||+||||||+|+|||+++|.+..+ +..+||+++|+|++||+++|+.+++|..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~--~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQ--KLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSN 78 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCC--CSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcC--CCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccc
Confidence 99999999999999999999986432 2358899999999999999999999964
Q ss_pred ------------------------------------CCCceeEeeccceEEEEEecCCceEEEEEecCCc----------
Q psy2725 57 ------------------------------------SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQA---------- 90 (143)
Q Consensus 57 ------------------------------------~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~---------- 90 (143)
+..|++++.|++|++|||+|+||+||||+||++.
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~ 158 (219)
T 3cue_A 79 RSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATT 158 (219)
T ss_dssp -------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC----------
T ss_pred ccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccc
Confidence 1347999999999999999999999999999987
Q ss_pred --------------hhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725 91 --------------QDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS 138 (143)
Q Consensus 91 --------------~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~ 138 (143)
+++|++|++|| ++|||||||||||++||||+|++||.+|++++++++
T Consensus 159 ~~~~~~~~~s~l~e~~ir~ff~~VY-elYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~~ 219 (219)
T 3cue_A 159 DKPDRPKSTSNLAIQIADNFLRKVY-CLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENLQ 219 (219)
T ss_dssp ----------CHHHHHHHHHHHHHH-HHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHHC
T ss_pred cccccccccccchHHHHHHHHHHHH-HHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhcC
Confidence 88999999999 999999999999999999999999999999999864
No 4
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=2.7e-43 Score=272.02 Aligned_cols=106 Identities=28% Similarity=0.546 Sum_probs=100.1
Q ss_pred hhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcC
Q psy2725 33 EEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKN 112 (143)
Q Consensus 33 ~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kN 112 (143)
|+.++++|++|||++|+++++|.+++.|+++++|++|++|||+|+||+||||+||++++++|++|++|| ++|+|||+||
T Consensus 106 n~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~Iy-elYvd~V~kN 184 (219)
T 2j3t_D 106 NEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIY-EIYSDFALKN 184 (219)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHH-HHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHH-HHHHHHhccC
Confidence 455678999999999999999977677999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCCCCCCccchhHHHHHHHHHHhccc
Q psy2725 113 PLINPREPIKSDLFQNALDALVKESSI 139 (143)
Q Consensus 113 Pfy~~~~pI~s~~F~~~v~~~~~~~~~ 139 (143)
|||++++||+|++||++|++++++++-
T Consensus 185 PFY~~~~pI~s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 185 PFYSLEMPIRCELFDQNLKLALEVAEK 211 (219)
T ss_dssp TTCCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCccchHHHHHHHHHHHHHhhc
Confidence 999999999999999999999998763
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=4e-41 Score=245.51 Aligned_cols=134 Identities=17% Similarity=0.356 Sum_probs=116.2
Q ss_pred Ce-EEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHH-HHHHhHHHHHHhhCCCCCCCc-eeEeeccceEEEEEecC
Q psy2725 1 MT-VYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMY-GMLFSLKSFVSKISPLDSKTG-FLSYKTTKYALHLYETP 77 (143)
Q Consensus 1 M~-iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~-g~l~sL~~i~~kls~~~~~~~-~~~~~t~~ykl~~~~T~ 77 (143)
|+ +|+|+||||+|+|||+++|.+..+ ...+++.++++ +++||+.+++++++|.++... ..+.++++|++|||+|+
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~--~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~ 80 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGK--AESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTA 80 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCC--GGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECT
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCc--CCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcC
Confidence 78 999999999999999999987432 12345666777 899999999999998643222 24568999999999999
Q ss_pred CceEEEEEecCC-chhHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725 78 TGLKFVLNTDVQ-AQDVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS 138 (143)
Q Consensus 78 Tg~KFvl~td~~-~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~ 138 (143)
||+|||++||++ ++++|++|++|| ++|+|+|+ ||||++|+||+|+.||++|+++++++-
T Consensus 81 tg~Kfvl~~d~~~~~~i~~~~~~iy-~~Y~~~v~-NPfy~~~~pI~s~~Fd~~v~~~~~~~l 140 (142)
T 2j3w_A 81 GHMRFIMLHDVRQEDGIKNFFTDVY-DLYIKFAM-NPFYEPNSPIRSSAFDRKVQFLGKKHL 140 (142)
T ss_dssp TCCEEEEEESSCCHHHHHHHHHHHH-HHHHHHHH-STTCCTTCCCCCHHHHHHHHHHHHHHT
T ss_pred CCcEEEEEeCCCCcHHHHHHHHHHH-HHHHHHhc-CCCCCCCCceecHHHHHHHHHHHHHhc
Confidence 999999999994 899999999999 99999877 999999999999999999999999863
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=99.85 E-value=1.8e-20 Score=138.48 Aligned_cols=108 Identities=19% Similarity=0.184 Sum_probs=80.7
Q ss_pred EEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHH-hHHHHHHhhC-CCCCC--Ccee-EeeccceEEEEEe-cCC
Q psy2725 5 NFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLF-SLKSFVSKIS-PLDSK--TGFL-SYKTTKYALHLYE-TPT 78 (143)
Q Consensus 5 ~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~-sL~~i~~kls-~~~~~--~~~~-~~~t~~ykl~~~~-T~T 78 (143)
.+.||||+++|||.+.+..... ..+++.+. ..++| ||+.+.++++ |.... .++. .++++++++|||+ |+|
T Consensus 12 FVaIIg~~n~PLyI~~~~~~~~---~~~~~Lk~-~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt 87 (162)
T 3pr6_A 12 FVSLIDESDKPILIYVPNEAEN---EMNDVLKY-NVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQT 87 (162)
T ss_dssp EEEEECTTSCEEEEECCC----------CHHHH-HHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTT
T ss_pred EEEEECCCCceeEEEeCCCccc---cccchhHH-HHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCC
Confidence 3569999999999999875321 11233444 45555 6888888884 32221 2343 5789999999998 999
Q ss_pred ceEEEEEecCC------c--hhHHHHHHHHHHhhhhhhhhcCCCCCCC
Q psy2725 79 GLKFVLNTDVQ------A--QDVRKFLASVYSKVYVEYVVKNPLINPR 118 (143)
Q Consensus 79 g~KFvl~td~~------~--~~i~~~l~~iy~~lYv~~v~kNPfy~~~ 118 (143)
|+|||+++|.+ + ++||++|+++| ++|++ +++||||.++
T Consensus 88 ~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh-~~Yvk-~l~NPFy~~~ 133 (162)
T 3pr6_A 88 GLKIVIGFEQKSLSGADDEFEAINQIFETVR-KIYIR-VKCNPLLVSG 133 (162)
T ss_dssp CCEEEEEEEGGGCCCCHHHHHHHHHHHHHHH-HHHHH-HHTCTTGGGS
T ss_pred ceEEEEEEccCCcccccchHHHHHHHHHHHH-HHHHH-HhcCCCCCCC
Confidence 99999999863 3 69999999999 99999 7889999998
No 7
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=97.07 E-value=0.04 Score=41.33 Aligned_cols=99 Identities=18% Similarity=0.175 Sum_probs=65.8
Q ss_pred CeEEEEEEEeCCCCeeE--EeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725 1 MTVYNFYLFDSFGTLLY--YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT 78 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy--~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T 78 (143)
|.||++.|+.+++...- ...++- ++-+.=.....--.+-+..+.+++++.|. .-.+++.+.|.+|+|....
T Consensus 2 mk~~~~~v~~~~~~~~~~l~~~~dl---ssf~~f~r~sv~ef~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~ 74 (199)
T 3kyq_A 2 MKLYSLSVFYKGEPKAVLLKAAYDV---SSFSFFQRSSVQEFMTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSD 74 (199)
T ss_dssp CCEEEEEEEEECSSCEEEEEEEECC---TTSCTTTHHHHHHHHHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTT
T ss_pred ceEEEEEEEEcCCCCceEEeeeccc---ccccceehHhHHHHHHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecC
Confidence 78999999988765322 222321 11111111122335667788888997652 3367889999999999999
Q ss_pred ceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725 79 GLKFVLNTDVQAQ--DVRKFLASVYSKVYVE 107 (143)
Q Consensus 79 g~KFvl~td~~~~--~i~~~l~~iy~~lYv~ 107 (143)
|+-+++++|..-+ -.-.+|.+|. +-|..
T Consensus 75 gl~yl~itd~~yp~r~AF~fL~ei~-~eF~~ 104 (199)
T 3kyq_A 75 SLAGVVIADSEYPSRVAFTLLEKVL-DEFSK 104 (199)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHH-HHHHH
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHH-HHHHH
Confidence 9999999998754 3456677777 54444
No 8
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=96.21 E-value=0.24 Score=36.63 Aligned_cols=125 Identities=12% Similarity=0.085 Sum_probs=74.4
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|.+|+++.-+..|.+|....-... .++ ++ +..+=--.+.+.+++.+.. ..-.++..+.|.+| |....|+
T Consensus 2 Mi~ya~IaR~~d~~iLa~~~d~~~-~~~----~~---~~~~~~~a~~il~ki~~~~--~~r~s~~~~~y~fh-y~~~~gl 70 (196)
T 2nut_C 2 MVLLTMIARVADGLPLAASMQEDE-QSG----RD---LQQYQSQAKQLFRKLNEQS--PTRCTLEAGAMTFH-YIIEQGV 70 (196)
T ss_dssp CCCCEEEEETTTCCEEEEECCCC----------C---HHHHHHHHHHHHHHCCTTS--CSEEEEEETTEEEE-EEEETTE
T ss_pred ceEEEEEEEcCCCcEEEEeecccc-ccc----cc---HHHHHHHHHHHHHhcCCCC--CCeEEEEeCCEEEE-EEeCCCe
Confidence 666666655566878876432211 001 11 1111222456677887622 24467888999999 7888999
Q ss_pred EEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCCccchhHHHHHHHHHHhcc
Q psy2725 81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREPIKSDLFQNALDALVKESS 138 (143)
Q Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~~~~~ 138 (143)
=|++++|..-+ -.-.+|.+|. +-|.... .+-.-....|..-..|+..+.++++.++
T Consensus 71 ~~l~i~d~~yp~r~af~fL~~i~-~~F~~~~-~~~~~~~~~~~~~~~f~~~l~~~~~~y~ 128 (196)
T 2nut_C 71 CYLVLCEAAFPKKLAFAYLEDLH-SEFDEQH-GKKVPTVSRPYSFIEFDTFIQKTKKLYI 128 (196)
T ss_dssp EEEEEEETTSCHHHHHHHHHHHH-HHHHHHH-TTTTTTCCSTTTTGGGHHHHHHHHTTTS
T ss_pred EEEEEEcCCcchHHHHHHHHHHH-HHHHHhc-cchhccccCCCchHHHHHHHHHHHHHhc
Confidence 99999998754 3456777777 5554421 1211112345555689999998877653
No 9
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=95.39 E-value=0.44 Score=33.59 Aligned_cols=98 Identities=21% Similarity=0.176 Sum_probs=58.9
Q ss_pred CeEEEEEEEeCCC-CeeE-EeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725 1 MTVYNFYLFDSFG-TLLY-YAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT 78 (143)
Q Consensus 1 M~iy~~~I~~r~g-~~iy-~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T 78 (143)
|.||++.|+..++ .++. ....+-+ ..+.-+....--.+-+-.+.+++++.+. .-.+++.++|.+|++....
T Consensus 5 Mkl~~~~v~r~~~~~~~~L~~~~d~s---~f~ffqr~sv~ef~~~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~ 77 (144)
T 3bw6_A 5 MRIYYIGVFRSGGEKALELSEVKDLS---QFGFFERSSVGQFMTFFAETVASRTGAG----QRQSIEEGNYIGHVYARSE 77 (144)
T ss_dssp CCEEEEEEEECCSSSCEEEEEEECCT---TSCTTTTTHHHHHHHHHHHHHHHHCCTT----EEEEEEETTEEEEEEECTT
T ss_pred EEEEEEEEEecCCCCCeEeEeeeccc---ccChhhhhhHHHHHHHHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecC
Confidence 7899998876543 2333 2222211 1111011011123445567788888652 3467899999999998899
Q ss_pred ceEEEEEecCCch--hHHHHHHHHHHhhhh
Q psy2725 79 GLKFVLNTDVQAQ--DVRKFLASVYSKVYV 106 (143)
Q Consensus 79 g~KFvl~td~~~~--~i~~~l~~iy~~lYv 106 (143)
|+=+++++|..-+ -.=.+|++|. +-|.
T Consensus 78 gl~~l~i~D~~yp~rvAF~~L~~i~-~eF~ 106 (144)
T 3bw6_A 78 GICGVLITDKEYPVRPAYTLLNKIL-DEYL 106 (144)
T ss_dssp SEEEEEEEETTSCHHHHHHHHHHHH-HHHH
T ss_pred CEEEEEEECCCCChhHHHHHHHHHH-HHHH
Confidence 9999999998643 3345556666 4343
No 10
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=95.20 E-value=0.49 Score=33.80 Aligned_cols=91 Identities=15% Similarity=0.176 Sum_probs=53.7
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
||-+++|+|++|.++..|.|... ...+.+.+..-++. ++...+ ....+ +..+.+++ .|..-.++
T Consensus 1 MI~~i~Il~~~Gk~~lsk~y~~~------~~~~~~~~~~~~~~------~i~~~~~~~~~~--i~~~~~~~-vy~~~~~L 65 (158)
T 1w63_Q 1 MMRFMLLFSRQGKLRLQKWYLAT------SDKERKKMVRELMQ------VVLARKPKMCSF--LEWRDLKV-VYKRYASL 65 (158)
T ss_dssp CEEEEEEECSSSCEEEEEESSCC------CHHHHHHHHHHHHH------HHHTSCSSSCSE--EEETTEEE-EEEEETTE
T ss_pred CeEEEEEECCCCCEEEEEeCCCC------CHHHHHHHHHHHHH------HHhccCCCCCCe--EEECCEEE-EEEEECCE
Confidence 47899999999999999999642 12223233322332 222211 11222 34455554 55667789
Q ss_pred EEEEEecCCch--hHHHHHHHHHHhhhhhh
Q psy2725 81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEY 108 (143)
Q Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~ 108 (143)
-|+++++.+.+ .+-++++.+. ++.-+|
T Consensus 66 yfv~~~~~~~Nel~~le~L~~~v-evl~~y 94 (158)
T 1w63_Q 66 YFCCAIEGQDNELITLELIHRYV-ELLDKY 94 (158)
T ss_dssp EEEEEECSSSCHHHHHHHHHHHH-HHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence 99999987654 3455566655 655554
No 11
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=92.28 E-value=2 Score=29.84 Aligned_cols=91 Identities=15% Similarity=0.284 Sum_probs=54.8
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCC-CCCceeEeeccceEEEEEecCCce
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~-~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
||-+++|+|++|.++..|.|... ..++.+.+..-++. ++...+ ....+ +..+++++ .|..-.++
T Consensus 1 MI~~i~i~~~~Gk~~l~k~y~~~------~~~~~~~~~~~f~~------~v~~~~~~~~~~--~~~~~~~~-vy~~~~~L 65 (142)
T 2vgl_S 1 MIRFILIQNRAGKTRLAKWYMQF------DDDEKQKLIEEVHA------VVTVRDAKHTNF--VEFRNFKI-IYRRYAGL 65 (142)
T ss_dssp CEEEEEEEETTSCEEEEEECSCC------CHHHHHHHHHHHHH------HHHTCCTTSCSE--EEETTEEE-EEEEETTE
T ss_pred CeEEEEEEcCCCCEEEEEeCCCC------ChhhhHHHHHHHHH------HHhcCCCCCCCE--EEECCEEE-EEEEECCE
Confidence 47899999999999999999641 12233333333332 222111 11222 33445544 55666789
Q ss_pred EEEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725 81 KFVLNTDVQAQD--VRKFLASVYSKVYVEY 108 (143)
Q Consensus 81 KFvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (143)
-|+++++.+.+. +-++++.+. ++.-+|
T Consensus 66 yfv~~~~~~~N~l~~le~L~~~v-e~l~~y 94 (142)
T 2vgl_S 66 YFCICVDVNDNNLAYLEAIHNFV-EVLNEY 94 (142)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH-HHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH-HHHHHH
Confidence 999999886543 456666666 666665
No 12
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=91.97 E-value=2.7 Score=30.74 Aligned_cols=84 Identities=23% Similarity=0.282 Sum_probs=51.8
Q ss_pred HHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCC-ccch
Q psy2725 48 FVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREP-IKSD 124 (143)
Q Consensus 48 i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~p-I~s~ 124 (143)
+.+++.+. +.-.++..+.|.+| |....|+-|++++|..-+ -.-.+|.+|. +-|....- +.-. ...| -.+.
T Consensus 33 iL~kip~~---~~k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~-~eF~~~~~-~~~~-~~~~~~~~~ 105 (189)
T 4b93_A 33 ILAKIPSE---NNKLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVK-KRFQTTYG-SRAQ-TALPYAMNS 105 (189)
T ss_dssp HHTTCCSS---SEEEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHH-HHHHHHHG-GGGG-TCCTTTTHH
T ss_pred HHHhCCCC---CCeEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHH-HHHHhhcc-cccc-ccCCccccc
Confidence 44566442 34568899999999 777899999999998643 3445666666 43433111 1111 1122 2345
Q ss_pred hHHHHHHHHHHhcc
Q psy2725 125 LFQNALDALVKESS 138 (143)
Q Consensus 125 ~F~~~v~~~~~~~~ 138 (143)
.|+..+++.++.++
T Consensus 106 ~f~~~l~~~~~~y~ 119 (189)
T 4b93_A 106 EFSSVLAAQLKHHS 119 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhh
Confidence 68888888877653
No 13
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=89.16 E-value=4.7 Score=33.06 Aligned_cols=90 Identities=10% Similarity=0.156 Sum_probs=53.4
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceE
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 81 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~K 81 (143)
||.+++|+|++|.++..+.|.... . .. . ++.+...+........=..+.++.++ ..|..-.++-
T Consensus 1 MI~~i~I~~~~Gk~~l~k~y~~~~------~-~~-~-------~~~f~~~v~~~~~~~~~~ii~~~~~~-~vy~~~~~Ly 64 (435)
T 2vgl_M 1 MIGGLFIYNHKGEVLISRVYRDDI------G-RN-A-------VDAFRVNVIHARQQVRSPVTNIARTS-FFHVKRSNIW 64 (435)
T ss_dssp CCCEEEEECTTCCEEEEEECSSSC------C-HH-H-------HHHHHHHTTTCSSCCCCSEEEETTEE-EEEEEETTEE
T ss_pred CeEEEEEECCCCCEEEEEecCCCC------C-hh-H-------HHHHHHHHhccccCCCCCEEEECCEE-EEEEEECCEE
Confidence 467899999999999999997421 1 11 1 13333444332111111234455554 4556777899
Q ss_pred EEEEecCCchh--HHHHHHHHHHhhhhhh
Q psy2725 82 FVLNTDVQAQD--VRKFLASVYSKVYVEY 108 (143)
Q Consensus 82 Fvl~td~~~~~--i~~~l~~iy~~lYv~~ 108 (143)
|+++++.+++. +-++++.+. ++.-+|
T Consensus 65 fv~~~~~~~n~l~~le~L~~~v-~vl~~y 92 (435)
T 2vgl_M 65 LAAVTKQNVNAAMVFEFLYKMC-DVMAAY 92 (435)
T ss_dssp EEEEESSCCCHHHHHHHHHHHH-HHHHHH
T ss_pred EEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence 99999876543 345556655 555554
No 14
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=88.67 E-value=0.74 Score=37.79 Aligned_cols=92 Identities=20% Similarity=0.197 Sum_probs=51.7
Q ss_pred CeEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCce
Q psy2725 1 MTVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 80 (143)
Q Consensus 1 M~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~ 80 (143)
|||-+++|+|++|.++..+.|..... .+......-.+. .+-.... ... .+.++.++ ..|..-.++
T Consensus 1 mMI~~i~I~~~~Gk~~l~k~y~~~~~-----~~~~~~f~~~v~------~~~~~~~-~~~--~i~~~~~~-~vy~~~~~L 65 (423)
T 1w63_M 1 MSASAVYVLDLKGKVLICRNYRGDVD-----MSEVEHFMPILM------EKEEEGM-LSP--ILAHGGVR-FMWIKHNNL 65 (423)
T ss_dssp -CCCEEEEEETTTEECSCBCCSCSCT-----TTTHHHHHHHHH------HHHHTSC-CCS--EEEETTEE-EEEEEETTE
T ss_pred CceEEEEEECCCCCEEEEEecCCCCC-----hHHHHHHHHHHh------hccccCC-CCC--EEEECCEE-EEEEEECCE
Confidence 89999999999999999999974211 111111111111 1101001 112 23344554 445666789
Q ss_pred EEEEEecCCch--hHHHHHHHHHHhhhhhh
Q psy2725 81 KFVLNTDVQAQ--DVRKFLASVYSKVYVEY 108 (143)
Q Consensus 81 KFvl~td~~~~--~i~~~l~~iy~~lYv~~ 108 (143)
-|+++++.+++ .+-++++.+. ++.-+|
T Consensus 66 yfv~~~~~~~n~l~~le~L~~~v-~~l~~y 94 (423)
T 1w63_M 66 YLVATSKKNACVSLVFSFLYKVV-QVFSEY 94 (423)
T ss_dssp EEEEEESSCCCTHHHHHHHHHHH-HHHHHH
T ss_pred EEEEEecCCCCHHHHHHHHHHHH-HHHHHH
Confidence 99999987653 3455666666 665554
No 15
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=86.28 E-value=5.7 Score=28.70 Aligned_cols=58 Identities=21% Similarity=0.296 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhh
Q psy2725 45 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVE 107 (143)
Q Consensus 45 L~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~ 107 (143)
.+.+.+++.+. .+-.+++.++|.+|++. -.|+-|++++|..-+ -.-.+|++|. +-|.+
T Consensus 72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~-~eF~~ 131 (169)
T 2vx8_A 72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVK-KRFQT 131 (169)
T ss_dssp HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHH-HHHHH
Confidence 45566777762 24467888999999998 469999999998642 3455666666 44443
No 16
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=78.23 E-value=15 Score=25.83 Aligned_cols=91 Identities=15% Similarity=0.232 Sum_probs=55.7
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceE
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 81 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~K 81 (143)
+|-.++|+|++|.++..+.|... .....+.+.+-.-+|.+ ++..+ ..+. ..+.+++ .|.--.++-
T Consensus 12 mI~~ililn~~Gk~~lsK~Y~~~----~~~~~~~~~~e~~i~~~------~~r~~--~~i~--~~~~~~~-vy~~~~~Ly 76 (153)
T 3tjz_C 12 TVKAILILDNDGDRLFAKYYDDT----YPSVKEQKAFEKNIFNK------THRTD--SEIA--LLEGLTV-VYKSSIDLY 76 (153)
T ss_dssp CEEEEEEECTTSCEEEEEECSSS----SCSHHHHHHHHHHHHHH------HSSCC--CCEE--EETTEEE-EEEECSSCE
T ss_pred HheEEEEECCCCCEEEEEeCCCC----CCCHHHHHHHHHHHHHH------HhCCC--CCEE--EECCEEE-EEEEECCEE
Confidence 67899999999999999999641 00122333233333332 22111 2232 3345554 566667899
Q ss_pred EEEEecCCch--hHHHHHHHHHHhhhhhh
Q psy2725 82 FVLNTDVQAQ--DVRKFLASVYSKVYVEY 108 (143)
Q Consensus 82 Fvl~td~~~~--~i~~~l~~iy~~lYv~~ 108 (143)
|+++++.++. .+-++++.+. ++.-+|
T Consensus 77 fv~~~~~~eNel~ile~L~~~v-e~l~~y 104 (153)
T 3tjz_C 77 FYVIGSSYENELMLMTVLNCLF-DSLSQM 104 (153)
T ss_dssp EEEEEETTSCHHHHHHHHHHHH-HHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHH-HHHHHH
Confidence 9999988754 4567777777 776665
No 17
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=50.46 E-value=63 Score=22.70 Aligned_cols=72 Identities=8% Similarity=0.124 Sum_probs=54.0
Q ss_pred eEEEEEe-cCCceEEEEEecCCchhHHHHHHHHHHhhhhhhhhcCCCCCCC---CCccchhHHHHHHHHHHhccccc
Q psy2725 69 YALHLYE-TPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPR---EPIKSDLFQNALDALVKESSISL 141 (143)
Q Consensus 69 ykl~~~~-T~Tg~KFvl~td~~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~---~pI~s~~F~~~v~~~~~~~~~~~ 141 (143)
+.|++|+ -|.++=+++.+.....++..+++.+- .-|.++.-+-++++.. ..|+++.--.++-.++...|.=+
T Consensus 48 ~~i~A~vlMpNH~Hll~~~p~~~~~ls~~~~~~k-~~~~~~~~~~~~WQ~ry~~~~i~~e~~l~~~~~YI~~NPVra 123 (165)
T 4er8_A 48 FEINAWVVLPEHMHCIWTLPEGDDDFSSRWREIK-KQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYIYINPVKH 123 (165)
T ss_dssp CEEEEEEECSSEEEEEEECCTTCCCHHHHHHHHH-HHHHHHTTCSSCBCSSCEEEECCSHHHHHHHHHHHHHHHHHT
T ss_pred cEEEEEEEcCCceEEEEEeCCcchhHHHHHHHHH-HHhHHhcccCcCcccCccceEECCHHHHHHHHHHHHhCHHhh
Confidence 5688887 56667666655556677889999888 8888877666777753 67899888888888988887533
No 18
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=48.96 E-value=67 Score=22.61 Aligned_cols=82 Identities=10% Similarity=0.150 Sum_probs=43.1
Q ss_pred eEEEEEEEeCCCCeeEEeeeccccCCCCCCchhHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceE-EEEEecCCce
Q psy2725 2 TVYNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYA-LHLYETPTGL 80 (143)
Q Consensus 2 ~iy~~~I~~r~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~yk-l~~~~T~Tg~ 80 (143)
.+++++|-||+|.||-...-.+. +. ...+..++...--+.+. +.|+.-... ..+-++ .++|. ++....|==+
T Consensus 37 Gl~aI~ItDrDGVpi~kv~~~~~---~e-~~~r~s~lsTf~~A~dQ-~sKLglGkn-ksII~~-Y~~yqvVq~n~~Plvi 109 (143)
T 3cpt_A 37 GLHAIVVSDRDGVPVIKVANDNA---PE-HALRPGFLSTFALATDQ-GSKLGLSKN-KSIICY-YNTYQVVQFNRLPLVV 109 (143)
T ss_dssp TEEEEEEECTTSCEEEEEECTTS---CG-GGGSHHHHHHHHHHHHH-HHHHTCCCE-EEEEEE-CSSEEEEEEEETTEEE
T ss_pred CeEEEEEECCCCcEEEEecCCCC---ch-hhcccchhhhHHHHHHH-HhhcCCCCC-ceEEEE-ecCeEEEEEecCCEEE
Confidence 47899999999999998865431 10 12223344442223333 356654332 222222 22333 5666665555
Q ss_pred EEEEEecCCc
Q psy2725 81 KFVLNTDVQA 90 (143)
Q Consensus 81 KFvl~td~~~ 90 (143)
-||.-.+.+.
T Consensus 110 t~Ias~~aNt 119 (143)
T 3cpt_A 110 SFIASSSANT 119 (143)
T ss_dssp EEEEETTSCH
T ss_pred EEEecCCCCc
Confidence 5555556554
No 19
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=47.12 E-value=11 Score=22.08 Aligned_cols=15 Identities=27% Similarity=0.660 Sum_probs=12.8
Q ss_pred HHHHHHHHHhhhhhhh
Q psy2725 94 RKFLASVYSKVYVEYV 109 (143)
Q Consensus 94 ~~~l~~iy~~lYv~~v 109 (143)
.+|++.|| ++|++-+
T Consensus 28 ~~Fl~~IH-eAYl~sl 42 (51)
T 2wx3_A 28 SSFLSTLH-EVYLQVL 42 (51)
T ss_dssp HHHHHHHH-HHHHHTT
T ss_pred HHHHHHHH-HHHHHHH
Confidence 58999999 9999943
No 20
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=41.87 E-value=42 Score=22.25 Aligned_cols=36 Identities=19% Similarity=0.373 Sum_probs=28.8
Q ss_pred ceEEEEEecCCceEEEEEecCC-------chhHHHHHHHHHHhh
Q psy2725 68 KYALHLYETPTGLKFVLNTDVQ-------AQDVRKFLASVYSKV 104 (143)
Q Consensus 68 ~ykl~~~~T~Tg~KFvl~td~~-------~~~i~~~l~~iy~~l 104 (143)
+-.++.-+|-.|+|.+++-.|. ..++..+|+++. +.
T Consensus 61 egsvsivetkngykylvirhpdggthtvpktdisailkelc-ev 103 (131)
T 2x5c_A 61 EGSVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELC-EV 103 (131)
T ss_dssp EEEEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHH-HH
T ss_pred ccceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHH-HH
Confidence 5578899999999999998774 257788888877 54
No 21
>3t12_B Gliding protein MGLB; G-domain containing protein, bacterial polarity, motility, homodimeric GAP protein, POLE localisation; HET: GDP; 2.20A {Thermus thermophilus} PDB: 3t1q_B*
Probab=40.26 E-value=88 Score=21.49 Aligned_cols=80 Identities=16% Similarity=0.071 Sum_probs=53.7
Q ss_pred EEEEEeCCCCeeEEee--eccccCCCCCCch-hHHHHHHHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCCceE
Q psy2725 5 NFYLFDSFGTLLYYAE--WNRLKHSGMPREE-EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLK 81 (143)
Q Consensus 5 ~~~I~~r~g~~iy~~~--~~~~~~~~~~~~~-~~~ll~g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~K 81 (143)
+..+++|+|.+|-+.. |...+ . ..+ -.-+.++.+-+...+++.+...+- .-...+.++..+|........=
T Consensus 28 ~~~lvd~dG~vIa~~~~~~~~~~---~-d~~~lAAl~A~~~~a~~~la~~Lge~~~--~~l~~eGe~~~i~i~~vg~~~i 101 (136)
T 3t12_B 28 YALLIDRKGFVLAHKEALWAPKP---P-PLDTLATLVASNAAATQALAKLLGEARF--QEEVHQGERMGLYVDEAGEHAL 101 (136)
T ss_dssp EEEEEETTC-CCEEEECTTSCCC---S-CHHHHHHHHHHHHHHHHHHHHHTTCSCC--CCEEEECSSCEEEEEESSTTEE
T ss_pred EEEEEcCCCCEEEEeccccCCCC---C-cHHHHHHHHHHHHHHHHHHHHHHCCCch--hHheEEcCcCCEEEEEcCCCEE
Confidence 5789999999998763 32211 0 111 223566777788889988865421 1224688899999999877788
Q ss_pred EEEEecCCc
Q psy2725 82 FVLNTDVQA 90 (143)
Q Consensus 82 Fvl~td~~~ 90 (143)
.+++.|.+.
T Consensus 102 Lvvifd~~~ 110 (136)
T 3t12_B 102 LVLVFDETA 110 (136)
T ss_dssp EEEEECTTS
T ss_pred EEEEeCCCC
Confidence 888888864
No 22
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=35.02 E-value=9.8 Score=20.31 Aligned_cols=31 Identities=13% Similarity=0.245 Sum_probs=22.0
Q ss_pred hhhhhhhhcCCCCCCCCCccchhHHHHHHHHH
Q psy2725 103 KVYVEYVVKNPLINPREPIKSDLFQNALDALV 134 (143)
Q Consensus 103 ~lYv~~v~kNPfy~~~~pI~s~~F~~~v~~~~ 134 (143)
.+=.+|++ -|..-......|+.||+.|++..
T Consensus 5 ~LALKYLL-TPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 5 GLALKYLL-TPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHHh-hhHHHHhcccchhhHHHHHHHhc
Confidence 34456644 66666677788999999998754
No 23
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=33.56 E-value=1.3e+02 Score=21.44 Aligned_cols=85 Identities=20% Similarity=0.268 Sum_probs=49.8
Q ss_pred HHHHHhhCCCCCCCceeEeeccceEEEEEecCCceEEEEEecCCch--hHHHHHHHHHHhhhhhhhhcCCCCCCCCCcc-
Q psy2725 46 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ--DVRKFLASVYSKVYVEYVVKNPLINPREPIK- 122 (143)
Q Consensus 46 ~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~Tg~KFvl~td~~~~--~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~- 122 (143)
+.+.+++.+. ..-.++..+.|.+|+.. -.|+-|++++|...+ -.-.+|.+|. +-|...- .+- .....|-.
T Consensus 83 ~~iL~kip~~---~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~rr~aF~FLedI~-~eF~~~y-g~~-~~ta~pya~ 155 (173)
T 4afi_A 83 EQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVK-KRFQTTY-GSR-AQTALPYAM 155 (173)
T ss_dssp HHHHTTSCSS---SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHH-HHHHHHH-GGG-GGTCCTTTT
T ss_pred HHHHHhCCCC---CCeEEEEECCEEEEEEE-ECCEEEEEEECCccChhHHHHHHHHHH-HHHHHHh-chh-hhhccCcch
Confidence 3445666553 24467888999999887 489999999998642 3344555555 3333211 010 00111211
Q ss_pred chhHHHHHHHHHHhc
Q psy2725 123 SDLFQNALDALVKES 137 (143)
Q Consensus 123 s~~F~~~v~~~~~~~ 137 (143)
+..|...+++.++.+
T Consensus 156 ~~eF~~~L~~~M~~y 170 (173)
T 4afi_A 156 NSEFSSVLAAQLKHH 170 (173)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 457888888887643
No 24
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=32.30 E-value=16 Score=20.88 Aligned_cols=14 Identities=21% Similarity=0.451 Sum_probs=11.5
Q ss_pred HHHHHHHHHhhhhhh
Q psy2725 94 RKFLASVYSKVYVEY 108 (143)
Q Consensus 94 ~~~l~~iy~~lYv~~ 108 (143)
.+|+.+|| ++|++-
T Consensus 26 ~~Fl~~iH-eAYl~s 39 (46)
T 2wx4_A 26 KEFANKLH-KAYLNG 39 (46)
T ss_dssp TTHHHHHH-HHHHC-
T ss_pred HHHHHHHH-HHHHHH
Confidence 37899999 999984
No 25
>2v2f_A Penicillin binding protein 1A; transpeptidase activity, peptidoglycan synthesis, transferase, hydrolase; HET: MES; 1.9A {Streptococcus pneumoniae} PDB: 2zc5_A* 2zc6_A*
Probab=21.45 E-value=59 Score=15.44 Aligned_cols=14 Identities=14% Similarity=0.152 Sum_probs=11.2
Q ss_pred EEEEeCCCCeeEEe
Q psy2725 6 FYLFDSFGTLLYYA 19 (143)
Q Consensus 6 ~~I~~r~g~~iy~~ 19 (143)
-.|++++|+.|...
T Consensus 7 s~IYD~~g~~i~~l 20 (26)
T 2v2f_A 7 SKIYDNKNQLIADL 20 (26)
T ss_pred CEEEeCCCCEeeec
Confidence 36899999988764
No 26
>1j3w_A Giding PROTEIN-MGLB; gliding, motility, mutational function, riken structur genomics/proteomics initiative, RSGI, structural genomics; HET: MES; 1.50A {Thermus thermophilus} SCOP: d.110.7.1 PDB: 3t1r_A 3t1s_A 3t1x_A
Probab=21.23 E-value=2.2e+02 Score=19.93 Aligned_cols=93 Identities=15% Similarity=0.082 Sum_probs=56.7
Q ss_pred EEEEEeCCCCeeEEee--eccccCCCCCCchhHHHHH----HHHHhHHHHHHhhCCCCCCCceeEeeccceEEEEEecCC
Q psy2725 5 NFYLFDSFGTLLYYAE--WNRLKHSGMPREEEGKLMY----GMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPT 78 (143)
Q Consensus 5 ~~~I~~r~g~~iy~~~--~~~~~~~~~~~~~~~~ll~----g~l~sL~~i~~kls~~~~~~~~~~~~t~~ykl~~~~T~T 78 (143)
...|+++.|-+|-..+ |.... . +...++ +++-..+.+++.+...+ -.-..++++.-.++...-..
T Consensus 31 ~avlvs~DGl~ia~~~~~~~~~~------~-d~d~lAA~~A~~~sl~~~~a~~l~~G~--~~q~~ve~~~g~l~v~~~g~ 101 (163)
T 1j3w_A 31 YALLIDRKGFVLAHKEALWAPKP------P-PLDTLATLVAGNAAATQALAKLLGEAR--FQEEVHQGERMGLYVDEAGE 101 (163)
T ss_dssp EEEEEETTSCEEEEEECTTSCCC------S-CHHHHHHHHHHHHHHTHHHHHHTTCSS--CSEEEEECSSCEEEEEESST
T ss_pred EEEEEcCCCCEEEeecccccCCC------C-cHHHHHHHHHHHHHHHHHHHHHhCCCC--ceEEEEEeCCcEEEEEEeCC
Confidence 5678999999998865 43311 1 333333 33333555666664321 11134678888888888888
Q ss_pred ceEEEEEecCCc------hhHHHHHHHHHHhhhhh
Q psy2725 79 GLKFVLNTDVQA------QDVRKFLASVYSKVYVE 107 (143)
Q Consensus 79 g~KFvl~td~~~------~~i~~~l~~iy~~lYv~ 107 (143)
|.=.+++.+++. -.++..-+++- ++-..
T Consensus 102 ~a~L~Vla~~~a~lG~v~~~m~~~v~~l~-~~L~~ 135 (163)
T 1j3w_A 102 HALLVLVFDETAPLGKVKLHGKRASEALA-RIAEE 135 (163)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHHHHHHHH-HHHHH
T ss_pred CeEEEEEeCCCCChHHHHHHHHHHHHHHH-HHHHH
Confidence 888888888864 23555556665 54444
Done!