RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2725
         (143 letters)



>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 140

 Score = 81.9 bits (202), Expect = 2e-21
 Identities = 22/134 (16%), Positives = 54/134 (40%), Gaps = 3/134 (2%)

Query: 4   YNFYLFDSFGTLLYYAEWNRLKHSGMPREEEGKLMYGMLFSLKSFVSKISPLDSKTGF-L 62
           + F +       ++  E+     +   +++   L   +  +    V +   L +      
Sbjct: 5   FYFVIVGHHDNPVFEMEFLPPGKAE-SKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKT 63

Query: 63  SYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYVEYVVKNPLINPREPIK 122
             K  ++ +  + T   ++F++  DV+ +D  K   +    +Y+++ + NP   P  PI+
Sbjct: 64  VDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAM-NPFYEPNSPIR 122

Query: 123 SDLFQNALDALVKE 136
           S  F   +  L K+
Sbjct: 123 SSAFDRKVQFLGKK 136


>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph
          {Haemophilus somnus [TaxId: 731]}
          Length = 224

 Score = 25.3 bits (53), Expect = 2.9
 Identities = 12/40 (30%), Positives = 16/40 (40%), Gaps = 6/40 (15%)

Query: 1  MTVYNFYLFDSFGTLL-----YYAEWNR-LKHSGMPREEE 34
          MT +    FD  GTL+          N  LK   +P+  E
Sbjct: 1  MTQFKLIGFDLDGTLVNSLPDLALSINSALKDVNLPQASE 40


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 489,151
Number of extensions: 19732
Number of successful extensions: 37
Number of sequences better than 10.0: 1
Number of HSP's gapped: 36
Number of HSP's successfully gapped: 5
Length of query: 143
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 66
Effective length of database: 1,350,386
Effective search space: 89125476
Effective search space used: 89125476
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (22.5 bits)