BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2726
(543 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 166 bits (419), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 75/151 (49%), Positives = 103/151 (68%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
+L H+R HTGE+P++C C K+F+ + +L +H +THTGEKPY C C K+F+QRANL
Sbjct: 36 HLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRA 95
Query: 396 HIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERV 455
H R HTGE+PY+C CGK F+Q A+L H R H+GE+PY C C K+F ++ NL H+R
Sbjct: 96 HQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRT 155
Query: 456 HTGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
HTG KPY C C K+F++ L H+ + G
Sbjct: 156 HTGEKPYKCPECGKSFSRRDALNVHQRTHTG 186
Score = 150 bits (380), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 68/144 (47%), Positives = 96/144 (66%)
Query: 343 IHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTG 402
+ GE+P+ C C K+F++ +L +H +THTGEKPY C C K+F+ + +L +H R HTG
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTG 74
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPY 462
E+PY C CGK F+Q+ANL H R H+GE+PY C C K+F Q ++L H+R HTG KPY
Sbjct: 75 EKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPY 134
Query: 463 SCKICWKAFAQTGNLTKHELSAHG 486
C C K+F++ NL H+ + G
Sbjct: 135 KCPECGKSFSREDNLHTHQRTHTG 158
Score = 141 bits (355), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 87/125 (69%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
+L H+R HTGE+P++C C K+F+Q+ NL H +THTGEKPY C C K+F+Q A+L
Sbjct: 64 DLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRA 123
Query: 396 HIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERV 455
H R HTGE+PY C CGK F+++ NL H R H+GE+PY C C K+F ++ L+ H+R
Sbjct: 124 HQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRT 183
Query: 456 HTGVK 460
HTG K
Sbjct: 184 HTGKK 188
Score = 138 bits (347), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/148 (43%), Positives = 92/148 (62%), Gaps = 9/148 (6%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWG-- 143
+ H+R HTGE+P++C C K+F+ + +L +H +THTGEKPY C C K+F+QRANL
Sbjct: 38 AEHQRTHTGEKPYKCPECGKSFSDKKDLTRHQRTHTGEKPYKCPECGKSFSQRANLRAHQ 97
Query: 144 -------SWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 196
+ C L +L H+R HTGE+P++C C K+F+++ NL H +THT
Sbjct: 98 RTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Query: 197 GEKPYNCGMCDKAFTQRANLLKHIRVHT 224
GEKPY C C K+F++R L H R HT
Sbjct: 158 GEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 117 bits (293), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 56/134 (41%), Positives = 80/134 (59%), Gaps = 19/134 (14%)
Query: 91 IHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPT 150
+ GE+P+ C C K+F++ +L +H +THTGEKPY C C K+F+ + +L
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT-------- 66
Query: 151 AVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAF 210
H+R HTGE+P++C C K+F+Q+ NL H +THTGEKPY C C K+F
Sbjct: 67 -----------RHQRTHTGEKPYKCPECGKSFSQRANLRAHQRTHTGEKPYACPECGKSF 115
Query: 211 TQRANLLKHIRVHT 224
+Q A+L H R HT
Sbjct: 116 SQLAHLRAHQRTHT 129
Score = 108 bits (271), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 71/241 (29%), Positives = 109/241 (45%), Gaps = 69/241 (28%)
Query: 166 IHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTE 225
+ GE+P+ C C K+F++ +L +H +THTGEKPY C C K+F+ + +L +
Sbjct: 15 LEPGEKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLTR------- 67
Query: 226 NLKLYTRRKXXXXXXXXXCAGIYPLHQEGGVGLMGLPSHCCPGPIXXXXXXXXXDGTFVC 285
HQ G + + C
Sbjct: 68 -------------------------HQRTHTG----------------------EKPYKC 80
Query: 286 KVCNKTFTQSS--WGHKGLTKSRDIQNLTGKISWAHSERNISGWLEELPLLVNLGTHERI 343
C K+F+Q + H+ + TG+ +A E S L +L H+R
Sbjct: 81 PECGKSFSQRANLRAHQ--------RTHTGEKPYACPECGKS-----FSQLAHLRAHQRT 127
Query: 344 HTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
HTGE+P++C C K+F+++ NL H +THTGEKPY C C K+F++R L H R HTG+
Sbjct: 128 HTGEKPYKCPECGKSFSREDNLHTHQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGK 187
Query: 404 R 404
+
Sbjct: 188 K 188
Score = 95.5 bits (236), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/118 (40%), Positives = 69/118 (58%), Gaps = 19/118 (16%)
Query: 82 RSRRSTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
R+ H+R HTGE+P+ C C K+F+Q +L H +THTGEKPY C C K+F++ NL
Sbjct: 90 RANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHTGEKPYKCPECGKSFSREDNL 149
Query: 142 WGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH+R HTGE+P++C C K+F+++ L H +THTG+K
Sbjct: 150 H-------------------THQRTHTGEKPYKCPECGKSFSRRDALNVHQRTHTGKK 188
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 101 bits (252), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/86 (52%), Positives = 58/86 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPY 434
EKPY C C K+F+Q +NL KH R HTGE+PY C CGK F+Q ++L KH R H+GE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 435 HCRYCTKTFIQQSNLDRHERVHTGVK 460
C C K+F + +L RH+R H K
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 43/86 (50%), Positives = 60/86 (69%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPY 406
E+P++C C K+F+Q NL KH +THTGEKPY C C K+F+Q ++L KH R HTGE+PY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 407 SCKLCGKRFTQQANLVKHNRLHSGER 432
C CGK F++ +L +H R H ++
Sbjct: 62 KCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 95.1 bits (235), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 40/79 (50%), Positives = 57/79 (72%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPY 462
E+PY C CGK F+Q +NL KH R H+GE+PY C C K+F Q S+L +H+R HTG KPY
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPY 61
Query: 463 SCKICWKAFAQTGNLTKHE 481
C C K+F+++ +L++H+
Sbjct: 62 KCPECGKSFSRSDHLSRHQ 80
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 42/101 (41%), Positives = 58/101 (57%), Gaps = 19/101 (18%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTF 182
EKPY C C K+F+Q +NL H+R HTGE+P++C C K+F
Sbjct: 2 EKPYKCPECGKSFSQSSNLQ-------------------KHQRTHTGEKPYKCPECGKSF 42
Query: 183 TQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
+Q +L KH +THTGEKPY C C K+F++ +L +H R H
Sbjct: 43 SQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 41/105 (39%), Positives = 62/105 (59%), Gaps = 19/105 (18%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRD 154
E+P++C C K+F+Q NL KH +THTGEKPY C C K+F+Q ++L
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQ------------ 49
Query: 155 LFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
H+R HTGE+P++C C K+F++ +L +H +TH +K
Sbjct: 50 -------KHQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 48/69 (69%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
NL H+R HTGE+P++C C K+F+Q +L KH +THTGEKPY C C K+F++ +L +
Sbjct: 19 NLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHLSR 78
Query: 396 HIRVHTGER 404
H R H ++
Sbjct: 79 HQRTHQNKK 87
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+P++C C K+F+Q NL KH +THTGEKPY C C K+F+Q ++L KH R HT
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHT 56
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 28/54 (51%), Positives = 40/54 (74%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
H+R HTGE+P++C C K+F+Q +L KH +THTGEKPY C C K+F++ +L
Sbjct: 23 HQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTGEKPYKCPECGKSFSRSDHL 76
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
E+PY C C K+F Q SNL +H+R HTG KPY C C K+F+Q+ +L KH+ + G
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDLQKHQRTHTG 57
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 27/37 (72%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
H+R HTGE+P++C C K+F++ +L +H +TH +K
Sbjct: 51 HQRTHTGEKPYKCPECGKSFSRSDHLSRHQRTHQNKK 87
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 45/118 (38%), Positives = 69/118 (58%), Gaps = 6/118 (5%)
Query: 345 TGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVH 400
+ +RPF C C K + + +L H + HTGEKPY C C++ F++ L +H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVH 456
TG +P+ CK C ++F++ +L H R H+GE+P+ CR+ C K F + L RH +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 86.7 bits (213), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 43/114 (37%), Positives = 69/114 (60%), Gaps = 6/114 (5%)
Query: 373 TGEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSC--KLCGKRFTQQANLVKHNRLH 428
+ ++P+ C C+K + + ++L H R HTGE+PY C K C +RF++ L +H R H
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRH 61
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCK--ICWKAFAQTGNLTKH 480
+G +P+ C+ C + F + +L H R HTG KP+SC+ C K FA++ L +H
Sbjct: 62 TGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRH 115
Score = 84.3 bits (207), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/99 (39%), Positives = 62/99 (62%), Gaps = 4/99 (4%)
Query: 334 LVNLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRA 391
L +L H R HTGE+P++C+ C + F++ L +H + HTG KP+ C C + F++
Sbjct: 21 LSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD 80
Query: 392 NLLKHIRVHTGERPYSCK--LCGKRFTQQANLVKHNRLH 428
+L H R HTGE+P+SC+ C K+F + LV+H+ +H
Sbjct: 81 HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 70/137 (51%), Gaps = 25/137 (18%)
Query: 93 TGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCH 148
+ +RPF C C K + + +L H + HTGEKPY C C++ F++ L
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQL------- 54
Query: 149 PTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG--MC 206
H+R HTG +PF+C+ C + F++ +L H +THTGEKP++C C
Sbjct: 55 ------------KRHQRRHTGVKPFQCKTCQRKFSRSDHLKTHTRTHTGEKPFSCRWPSC 102
Query: 207 DKAFTQRANLLKHIRVH 223
K F + L++H +H
Sbjct: 103 QKKFARSDELVRHHNMH 119
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 23/112 (20%)
Query: 88 HERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSW 145
H R HTGE+P++C+ C + F++ L +H + HTG KP+ C C + F++
Sbjct: 27 HSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKFSRSD------ 80
Query: 146 VCHPTAVRDLFLVNLGTHERIHTGERPFRCE--VCMKTFTQQPNLWKHMKTH 195
+L TH R HTGE+PF C C K F + L +H H
Sbjct: 81 -------------HLKTHTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 43/74 (58%), Gaps = 2/74 (2%)
Query: 153 RDLFLVNLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAF 210
R L +L H R HTGE+P++C+ C + F++ L +H + HTG KP+ C C + F
Sbjct: 17 RYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTGVKPFQCKTCQRKF 76
Query: 211 TQRANLLKHIRVHT 224
++ +L H R HT
Sbjct: 77 SRSDHLKTHTRTHT 90
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 87 THERIHTGERPFRCE--VCMKTFTQQPNLWKHMKTH 120
TH R HTGE+PF C C K F + L +H H
Sbjct: 84 THTRTHTGEKPFSCRWPSCQKKFARSDELVRHHNMH 119
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 58/84 (69%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q+A+L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F +H ++H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 85.5 bits (210), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 55/80 (68%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF+Q+ NL H R+H+G++P+ CR C + F QQ++L+ H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA T+H
Sbjct: 62 PFACDICGRKFATLHTRTRH 81
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/84 (42%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F+Q+ NL HIR+HTG++P+ C++C + F+QQA+L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F RH ++H
Sbjct: 62 PFACDICGRKFATLHTRTRHTKIH 85
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 39/103 (37%), Positives = 59/103 (57%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F+Q+ NL TH RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSQK-------------------TNLDTHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F+QQ +L H++THTGEKP+ C +C + F +H ++H
Sbjct: 43 NFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIH 85
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/70 (44%), Positives = 48/70 (68%)
Query: 335 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLL 394
NL TH RIHTG++PF+C +CM+ F+QQ +L H++THTGEKP+ C +C + F
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKFATLHTRT 79
Query: 395 KHIRVHTGER 404
+H ++H ++
Sbjct: 80 RHTKIHLRQK 89
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/107 (34%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q+A
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQA------------- 48
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+L H R HTGE+PF C++C + F +H K H +K
Sbjct: 49 ------SLNAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 39/50 (78%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAF 135
TH RIHTG++PF+C +CM+ F+QQ +L H++THTGEKP+ C +C + F
Sbjct: 23 DTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHTGEKPFACDICGRKF 72
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q+A+L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQQASLNAHIRTHT 58
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+ H R HTGE+PF C++C + F +H K H +K
Sbjct: 51 NAHIRTHTGEKPFACDICGRKFATLHTRTRHTKIHLRQK 89
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 85.9 bits (211), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 36/81 (44%), Positives = 55/81 (67%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCR 437
++C +C K+F + + L H+ +H+ RPY C+ CGKRF Q++++ KH +H+GE+P+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 438 YCTKTFIQQSNLDRHERVHTG 458
C K F Q SNL H R HTG
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 34/81 (41%), Positives = 55/81 (67%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCK 409
F C++C K+F + L H+ H+ +PY C C K F Q++++ KH +HTGE+P+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 410 LCGKRFTQQANLVKHNRLHSG 430
+CGK F+Q +NL+ H+R H+G
Sbjct: 62 VCGKAFSQSSNLITHSRKHTG 82
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCK 465
+ CK+CGK F + + L H +HS RPY C+YC K F Q+S++ +H +HTG KP+ C+
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQ 61
Query: 466 ICWKAFAQTGNLTKHE 481
+C KAF+Q+ NL H
Sbjct: 62 VCGKAFSQSSNLITHS 77
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 44/67 (65%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
L TH IH+ RP+ C+ C K F Q+ ++ KH HTGEKP+ C +C KAF+Q +NL+
Sbjct: 16 TLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLIT 75
Query: 396 HIRVHTG 402
H R HTG
Sbjct: 76 HSRKHTG 82
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 53/99 (53%), Gaps = 19/99 (19%)
Query: 126 YNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQ 185
++C +C K+F + + L TH IH+ RP+ C+ C K F Q+
Sbjct: 2 FDCKICGKSFKRSSTL-------------------STHLLIHSDTRPYPCQYCGKRFHQK 42
Query: 186 PNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
++ KH HTGEKP+ C +C KAF+Q +NL+ H R HT
Sbjct: 43 SDMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHT 81
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 50/100 (50%), Gaps = 19/100 (19%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFL 157
F C++C K+F + L H+ H+ +PY C C K F Q++++
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHSDTRPYPCQYCGKRFHQKSDM---------------- 45
Query: 158 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTG 197
H IHTGE+P +C+VC K F+Q NL H + HTG
Sbjct: 46 ---KKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 39/59 (66%)
Query: 83 SRRSTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
S STH IH+ RP+ C+ C K F Q+ ++ KH HTGEKP+ C +C KAF+Q +NL
Sbjct: 15 STLSTHLLIHSDTRPYPCQYCGKRFHQKSDMKKHTFIHTGEKPHKCQVCGKAFSQSSNL 73
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 45/99 (45%), Gaps = 17/99 (17%)
Query: 24 TFVCKVCNKTFTQSSWGHKGLTKSRDIQNLTGKISWAHSERNISGWXXXXXXXXXXXXRS 83
+F CK+C K+F +SS L+ I + T + + +S
Sbjct: 1 SFDCKICGKSFKRSST----LSTHLLIHSDTRPYPCQYCGKRF-------------HQKS 43
Query: 84 RRSTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTG 122
H IHTGE+P +C+VC K F+Q NL H + HTG
Sbjct: 44 DMKKHTFIHTGEKPHKCQVCGKAFSQSSNLITHSRKHTG 82
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 85.1 bits (209), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 46/110 (41%), Positives = 61/110 (55%), Gaps = 5/110 (4%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKL--CG 412
C K F + KH+ TH G + + C C KAF + + L +H VHTGE+P+ C CG
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 413 KRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVK 460
KRF+ NL H R+H+G+RPY C + C K F Q +NL H H K
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/105 (40%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Query: 383 CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRY--CT 440
C K F + + KH+ H G R + C CGK F + + L +H +H+GE+P+ C + C
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCG 71
Query: 441 KTFIQQSNLDRHERVHTGVKPYSCKI--CWKAFAQTGNLTKHELS 483
K F NL H R+HTG +PY C C K FAQ+ NL H L+
Sbjct: 72 KRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILT 116
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 51/99 (51%), Gaps = 5/99 (5%)
Query: 336 NLGTHERIHT-GERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 392
N + +HT G R C C K F + L +H HTGEKP+ C C K F+ N
Sbjct: 20 NSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFN 79
Query: 393 LLKHIRVHTGERPYSCKL--CGKRFTQQANLVKHNRLHS 429
L H+R+HTG+RPY C C K+F Q NL H H+
Sbjct: 80 LRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 61/127 (48%), Gaps = 24/127 (18%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGT 162
C K F + KH+ TH G + + C C KAF + + L
Sbjct: 13 CTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLK-------------------R 52
Query: 163 HERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLK 218
H+ +HTGE+PF+C E C K F+ NL H++ HTG++PY C C+K F Q NL
Sbjct: 53 HQLVHTGEKPFQCTFEGCGKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKS 112
Query: 219 HIRVHTE 225
HI H +
Sbjct: 113 HILTHAK 119
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/123 (34%), Positives = 54/123 (43%), Gaps = 24/123 (19%)
Query: 82 RSRRSTHERIHT-GERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQR 138
R + + +HT G R C C K F + L +H HTGEKP+ C C K F+
Sbjct: 18 RDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFS-- 75
Query: 139 ANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHT 196
NL TH RIHTG+RP+ C + C K F Q NL H+ TH
Sbjct: 76 -----------------LDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHA 118
Query: 197 GEK 199
K
Sbjct: 119 KAK 121
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 409 KLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKI-- 466
K C K F + + KH H G R + C C K F++ S L RH+ VHTG KP+ C
Sbjct: 11 KGCTKMFRDNSAMRKHLHTH-GPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEG 69
Query: 467 CWKAFAQTGNLTKHELSAHGIGKPGV 492
C K F+ NL H + H +P V
Sbjct: 70 CGKRFSLDFNLRTH-VRIHTGDRPYV 94
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F+Q+ NL HIR+HTG++P+ C++C + F+Q L +H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F DRH ++H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 35/84 (41%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q L +HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F +H ++H
Sbjct: 62 PFACDICGRKFATLHTRDRHTKIH 85
Score = 81.6 bits (200), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/80 (43%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF+Q+ NL H R+H+G++P+ CR C + F Q + L++H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA +H
Sbjct: 62 PFACDICGRKFATLHTRDRH 81
Score = 79.3 bits (194), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 58/103 (56%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F+Q+ NL TH RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSQK-------------------TNLDTHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F+Q L +H++THTGEKP+ C +C + F +H ++H
Sbjct: 43 NFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIH 85
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%)
Query: 335 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLL 394
NL TH RIHTG++PF+C +CM+ F+Q L +H++THTGEKP+ C +C + F
Sbjct: 20 TNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFATLHTRD 79
Query: 395 KHIRVHTGER 404
+H ++H ++
Sbjct: 80 RHTKIHLRQK 89
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFT 136
TH RIHTG++PF+C +CM+ F+Q L +H++THTGEKP+ C +C + F
Sbjct: 23 DTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHTGEKPFACDICGRKFA 73
Score = 65.9 bits (159), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 53/107 (49%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQH-------------- 47
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
L H R HTGE+PF C++C + F +H K H +K
Sbjct: 48 -----TGLNQHIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F+Q+ NL H++ HTG+KP+ C +C + F+Q L +HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQCRICMRNFSQHTGLNQHIRTHT 58
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
H R HTGE+PF C++C + F +H K H +K
Sbjct: 53 HIRTHTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 82.8 bits (203), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F+ NL +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF+ +NL +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F+ +NL +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F+ +NL H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSDSSNLT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 47/69 (68%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
NL H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +
Sbjct: 21 NLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 396 HIRVHTGER 404
H ++H ++
Sbjct: 81 HTKIHLRQK 89
Score = 68.6 bits (166), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F+ NL +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F+ NL +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 82.0 bits (201), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 33/84 (39%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F+Q +L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F+Q +L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.5 bits (197), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF+Q +L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 75.1 bits (183), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F+Q +L H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSQSGSLT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 45/65 (69%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
+L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +
Sbjct: 21 SLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 396 HIRVH 400
H ++H
Sbjct: 81 HTKIH 85
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F+Q +L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F+Q +L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 82.0 bits (201), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F++ +L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 81.3 bits (199), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 54/80 (67%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF++ A+L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F++ A+L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 75.5 bits (184), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 58/103 (56%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F++ A+L H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSRSADLT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 47/70 (67%)
Query: 335 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLL 394
+L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 20 ADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 395 KHIRVHTGER 404
+H ++H ++
Sbjct: 80 RHTKIHLRQK 89
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 56/107 (52%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F++ +L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F++ +L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 33/80 (41%), Positives = 53/80 (66%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF++ A L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 55/84 (65%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F++ A L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F++ A L H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSRSAELT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 44/66 (66%)
Query: 335 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLL 394
L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 20 AELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERK 79
Query: 395 KHIRVH 400
+H ++H
Sbjct: 80 RHTKIH 85
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+L TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF++ L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F++ L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVHTGVK 460
P+ C C + F + RH ++H K
Sbjct: 62 PFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F++ L H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSRSDELT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 396 HIRVH 400
H ++H
Sbjct: 81 HTKIH 85
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/107 (31%), Positives = 55/107 (51%), Gaps = 21/107 (19%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+L TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 49 HLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+TH R HTGE+PF C++C + F + +H K H +K
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIHLRQK 89
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF++ L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 62 PFACDICGRKFARSDERKRH 81
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F++ L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 61
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 62 PFACDICGRKFARSDERKRHTKIH 85
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F++ L H RIHTG++PF+C +CM+
Sbjct: 2 ERPYACPVESCDRRFSRSDELT-------------------RHIRIHTGQKPFQCRICMR 42
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 43 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +
Sbjct: 21 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 80
Query: 396 HIRVH 400
H ++H
Sbjct: 81 HTKIH 85
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 21/103 (20%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 51
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
TH R HTGE+PF C++C + F + +H K H
Sbjct: 52 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 25 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 74
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 58
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
+TH R HTGE+PF C++C + F + +H K H
Sbjct: 51 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 80.9 bits (198), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Query: 347 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HTGE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 405 PYSCKLCGKRFTQQANLVKHNRLH 428
P++C +CG++F + +H ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
ERPY+C + C +RF++ L +H R+H+G++P+ CR C + F + +L H R HTG K
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 461 PYSCKICWKAFAQTGNLTKH 480
P++C IC + FA++ +H
Sbjct: 61 PFACDICGRKFARSDERKRH 80
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 54/84 (64%), Gaps = 2/84 (2%)
Query: 375 EKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C + CD+ F++ L +HIR+HTG++P+ C++C + F++ +L H R H+GE+
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEK 60
Query: 433 PYHCRYCTKTFIQQSNLDRHERVH 456
P+ C C + F + RH ++H
Sbjct: 61 PFACDICGRKFARSDERKRHTKIH 84
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 21/103 (20%)
Query: 123 EKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
E+PY C + CD+ F++ L H RIHTG++PF+C +CM+
Sbjct: 1 ERPYACPVESCDRRFSRSDELT-------------------RHIRIHTGQKPFQCRICMR 41
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
F++ +L H++THTGEKP+ C +C + F + +H ++H
Sbjct: 42 NFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 44/65 (67%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
L H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +
Sbjct: 20 ELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKR 79
Query: 396 HIRVH 400
H ++H
Sbjct: 80 HTKIH 84
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/103 (32%), Positives = 53/103 (51%), Gaps = 21/103 (20%)
Query: 95 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLT---------- 50
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
TH R HTGE+PF C++C + F + +H K H
Sbjct: 51 ---------THIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 38/50 (76%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
H RIHTG++PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 24 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 73
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 170 ERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
ERP+ C E C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 57
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
+TH R HTGE+PF C++C + F + +H K H
Sbjct: 50 TTHIRTHTGEKPFACDICGRKFARSDERKRHTKIH 84
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 35/83 (42%), Positives = 51/83 (61%)
Query: 349 PFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSC 408
P +CEVC K F+++ L HM+ HTG KPY C CD A ++L KH+R+H+ ERP+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 409 KLCGKRFTQQANLVKHNRLHSGE 431
++C + L H R H+G+
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGD 90
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/102 (35%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 97 PFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLF 156
P +CEVC K F+++ L HM+ HTG KPY C CD A +
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSS----------------- 50
Query: 157 LVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
+L H RIH+ ERPF+C++C L H+++HTG+
Sbjct: 51 --SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 46/82 (56%)
Query: 377 PYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHC 436
P+ C +C K F+++ L H+R HTG +PY CK C ++L KH R+HS ERP+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 437 RYCTKTFIQQSNLDRHERVHTG 458
+ C S L H R HTG
Sbjct: 68 QICPYASRNSSQLTVHLRSHTG 89
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 49/86 (56%)
Query: 405 PYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSC 464
P+ C++CGK F+++ L H R H+G +PY C+ C S+L++H R+H+ +P+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKC 67
Query: 465 KICWKAFAQTGNLTKHELSAHGIGKP 490
+IC A + LT H S G P
Sbjct: 68 QICPYASRNSSQLTVHLRSHTGDSGP 93
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTE 225
P +CEVC K F+++ L HM+ HTG KPY C CD A ++L KH+R+H++
Sbjct: 8 PHKCEVCGKCFSRKDKLKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSD 61
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 39/67 (58%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKH 396
L TH R HTG +P++C+ C +L KH++ H+ E+P+ C +C A + L H
Sbjct: 24 LKTHMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVH 83
Query: 397 IRVHTGE 403
+R HTG+
Sbjct: 84 LRSHTGD 90
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 48/102 (47%), Gaps = 19/102 (18%)
Query: 125 PYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQ 184
P+ C +C K F+++ L TH R HTG +P++C+ C
Sbjct: 8 PHKCEVCGKCFSRKDKLK-------------------THMRCHTGVKPYKCKTCDYAAAD 48
Query: 185 QPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTEN 226
+L KH++ H+ E+P+ C +C A + L H+R HT +
Sbjct: 49 SSSLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 87 THERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
TH R HTG +P++C+ C +L KH++ H+ E+P+ C +C A + L
Sbjct: 26 THMRCHTGVKPYKCKTCDYAAADSSSLNKHLRIHSDERPFKCQICPYASRNSSQL 80
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
+L H RIH+ ERPF+C++C L H+++HTG+
Sbjct: 51 SLNKHLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
H RIH+ ERPF+C++C L H+++HTG+
Sbjct: 55 HLRIHSDERPFKCQICPYASRNSSQLTVHLRSHTGD 90
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/115 (40%), Positives = 68/115 (59%), Gaps = 11/115 (9%)
Query: 317 WAHSERNISGWLEELPLLVNLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTG 374
W R + + + L+V H R HTGE+P +C E C K++++ NL H+++HTG
Sbjct: 39 WGGCSRELRPFKAQYMLVV----HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTG 94
Query: 375 EKPYNCGM--CDKAFTQRANLLKHI-RVHTGERPYSCKL--CGKRFTQQANLVKH 424
EKPY C C KAF+ ++ KH R H+ E+PY CKL C KR+T ++L KH
Sbjct: 95 EKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKH 149
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/151 (34%), Positives = 78/151 (51%), Gaps = 15/151 (9%)
Query: 351 RCEVCMKTFTQQPNLWKHMKT---HTGEKPYNC--GMCDKA---FTQRANLLKHIRVHTG 402
R + C + F Q L H+ + H K + C G C + F + L+ H+R HTG
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTG 64
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHE-RVHT 457
E+P+ C C K +++ NL H R H+GE+PY C + C+K F S+ +H+ R H+
Sbjct: 65 EKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Query: 458 GVKPYSCKI--CWKAFAQTGNLTKHELSAHG 486
KPY CK+ C K + +L KH + HG
Sbjct: 125 NEKPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
Score = 68.9 bits (167), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 46/130 (35%), Positives = 66/130 (50%), Gaps = 26/130 (20%)
Query: 100 CEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFL 157
C ++ F Q L HM+ HTGEKP+ C C K++++ L
Sbjct: 42 CSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSR-------------------L 82
Query: 158 VNLGTHERIHTGERPFRCE--VCMKTFTQQPNLWKHM-KTHTGEKPYNCGM--CDKAFTQ 212
NL TH R HTGE+P+ CE C K F+ + KH +TH+ EKPY C + C K +T
Sbjct: 83 ENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKPYVCKLPGCTKRYTD 142
Query: 213 RANLLKHIRV 222
++L KH++
Sbjct: 143 PSSLRKHVKT 152
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/124 (34%), Positives = 61/124 (49%), Gaps = 12/124 (9%)
Query: 383 CDKAFTQRANLLKHIR---VHTGERPYSCKLCG-----KRFTQQANLVKHNRLHSGERPY 434
C + F + L+ HI +H + + C G + F Q LV H R H+GE+P+
Sbjct: 9 CSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPH 68
Query: 435 HCRY--CTKTFIQQSNLDRHERVHTGVKPYSCKI--CWKAFAQTGNLTKHELSAHGIGKP 490
C + C K++ + NL H R HTG KPY C+ C KAF+ + KH+ H KP
Sbjct: 69 KCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNRTHSNEKP 128
Query: 491 GVNK 494
V K
Sbjct: 129 YVCK 132
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 59/114 (51%), Gaps = 24/114 (21%)
Query: 87 THERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLW 142
H R HTGE+P +C E C K++++ NL H+++HTGEKPY C C KAF+ ++
Sbjct: 57 VHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASD-- 114
Query: 143 GSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKT 194
R H+ E+P+ C++ C K +T +L KH+KT
Sbjct: 115 ----------------RAKHQNRTHSNEKPYVCKLPGCTKRYTDPSSLRKHVKT 152
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 65/142 (45%), Gaps = 25/142 (17%)
Query: 99 RCEVCMKTFTQQPNLWKHMKT---HTGEKPYNC--GMCDKAFTQRANLWGSWVCHPTAVR 153
R + C + F Q L H+ + H K + C G C + P +
Sbjct: 5 RWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELR------------PFKAQ 52
Query: 154 DLFLVNLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKA 209
+ +V H R HTGE+P +C E C K++++ NL H+++HTGEKPY C C KA
Sbjct: 53 YMLVV----HMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKA 108
Query: 210 FTQRANLLKHIRVHTENLKLYT 231
F+ ++ KH N K Y
Sbjct: 109 FSNASDRAKHQNRTHSNEKPYV 130
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 59/139 (42%), Positives = 71/139 (51%), Gaps = 13/139 (9%)
Query: 337 LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 392
L H HTGE+PF C E C K FT +L +H THTGEK + C CD FT +AN
Sbjct: 30 LQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 89
Query: 393 LLKHI-RVHTGER-PYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQ 446
+ KH R H + Y C CGK F + L H H+ + PY C + C K F
Sbjct: 90 MKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLP 149
Query: 447 SNLDRHERVHTGVKPYSCK 465
S L RHE+VH G Y CK
Sbjct: 150 SRLKRHEKVHAG---YPCK 165
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 50/137 (36%), Positives = 71/137 (51%), Gaps = 10/137 (7%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKL-- 410
C + + L H+ HTGEKP+ C C+K FT +L +H HTGE+ ++C
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 79
Query: 411 CGKRFTQQANLVKH-NRLHSGER-PYHCRY--CTKTFIQQSNLDRHERVHTGVKPYSC-- 464
C RFT +AN+ KH NR H+ + Y C + C K F + + L H+ HT PY C
Sbjct: 80 CDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPH 139
Query: 465 KICWKAFAQTGNLTKHE 481
+ C K F+ L +HE
Sbjct: 140 EGCDKRFSLPSRLKRHE 156
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/151 (35%), Positives = 70/151 (46%), Gaps = 25/151 (16%)
Query: 92 HTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWG---- 143
HTGE+PF C E C K FT +L +H THTGEK + C CD FT +AN+
Sbjct: 37 HTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNR 96
Query: 144 -------SWVCHPTAVRDLFLVN--LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHM 192
+VCH F + L H+ HT + P+ C E C K F+ L +H
Sbjct: 97 FHNIKICVYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHE 156
Query: 193 KTHTG---EKPYNCGMCDKAFTQRANLLKHI 220
K H G +K +C K +T LKH+
Sbjct: 157 KVHAGYPCKKDDSCSFVGKTWTL---YLKHV 184
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 57/118 (48%), Gaps = 10/118 (8%)
Query: 376 KPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKL--CGKRFTQQANLVKHNRLHSGE 431
K Y C C A+ + L H+ HTGE+P+ CK C K FT +L +H+ H+GE
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 70
Query: 432 RPYHCRY--CTKTFIQQSNLDRH-ERVHT-GVKPYSCKI--CWKAFAQTGNLTKHELS 483
+ + C C F ++N+ +H R H + Y C C KAF + L H+ S
Sbjct: 71 KNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHNQLKVHQFS 128
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 51/105 (48%), Gaps = 8/105 (7%)
Query: 334 LVNLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEK--PYNCGM--CDKAF 387
L +L H HTGE+ F C+ C FT + N+ KH K Y C C KAF
Sbjct: 57 LHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAF 116
Query: 388 TQRANLLKHIRVHTGERPYSC--KLCGKRFTQQANLVKHNRLHSG 430
+ L H HT + PY C + C KRF+ + L +H ++H+G
Sbjct: 117 KKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG 161
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 53/133 (39%), Gaps = 27/133 (20%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNL 160
C + + L H+ HTGEKP+ C C+K FT L +L
Sbjct: 20 CGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTS-------------------LHHL 60
Query: 161 GTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEK--PYNCGM--CDKAFTQRA 214
H HTGE+ F C+ C FT + N+ KH K Y C C KAF +
Sbjct: 61 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFENCGKAFKKHN 120
Query: 215 NLLKHIRVHTENL 227
L H HT+ L
Sbjct: 121 QLKVHQFSHTQQL 133
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/82 (41%), Positives = 50/82 (60%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPY 406
++ F C+ C + FT+ NL H +THT E+PY C +C KAF ++ +L H +H+ E+P+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 407 SCKLCGKRFTQQANLVKHNRLH 428
C+ CGK F Q L H LH
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/82 (42%), Positives = 49/82 (59%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPY 434
+K + C C + FT+ NLL H R HT ERPY+C +C K F +Q +L H +HS E+P+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 435 HCRYCTKTFIQQSNLDRHERVH 456
C+ C K F Q L H+ +H
Sbjct: 75 KCQECGKGFCQSRTLAVHKTLH 96
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 47/79 (59%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPY 462
++ + CK CG+ FT+ NL+ H R H+ ERPY C C K F +Q +L H +H+ KP+
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPF 74
Query: 463 SCKICWKAFAQTGNLTKHE 481
C+ C K F Q+ L H+
Sbjct: 75 KCQECGKGFCQSRTLAVHK 93
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 38/68 (55%)
Query: 159 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 218
NL HER HT ERP+ C++C K F +Q +L H H+ EKP+ C C K F Q L
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Query: 219 HIRVHTEN 226
H +H +
Sbjct: 92 HKTLHMQT 99
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 37/65 (56%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLK 395
NL HER HT ERP+ C++C K F +Q +L H H+ EKP+ C C K F Q L
Sbjct: 32 NLLIHERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAV 91
Query: 396 HIRVH 400
H +H
Sbjct: 92 HKTLH 96
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 36/101 (35%), Positives = 51/101 (50%), Gaps = 19/101 (18%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRD 154
++ F C+ C + FT+ NL H +THT E+PY C +C KAF ++ +L RD
Sbjct: 15 KKEFICKFCGRHFTKSYNLLIHERTHTDERPYTCDICHKAFRRQDHL-----------RD 63
Query: 155 LFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
H IH+ E+PF+C+ C K F Q L H H
Sbjct: 64 --------HRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVC 147
HER HT ERP+ C++C K F +Q +L H H+ EKP+ C C K F Q L
Sbjct: 36 HERTHTDERPYTCDICHKAFRRQDHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTL 95
Query: 148 H-----PTAV 152
H PTA
Sbjct: 96 HMQTSSPTAA 105
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 73.6 bits (179), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 65/118 (55%), Gaps = 4/118 (3%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIR---VHT 401
+G C C K F + L H + HTGEKP+ C C K + ++ NLL+H ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 402 GERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHE-RVHTG 458
E+ ++C +C + F ++ L H H+GE PY C C++ F+Q+ +L H ++H+G
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 3/117 (2%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH---NRLHS 429
+G C C K F + L H R HTGE+P+ C CGK + ++ NL++H N ++
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNR 62
Query: 430 GERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
E+ + C C +TF ++ L H HTG PY C C + F Q +L H + H
Sbjct: 63 SEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 55/98 (56%), Gaps = 4/98 (4%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMK---THTGEKPYNCGMCDKAFTQRANL 393
L H R HTGE+PF C C K + ++ NL +H + E+ + C +C + F +R L
Sbjct: 23 LKVHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRRMEL 82
Query: 394 LKHIRVHTGERPYSCKLCGKRFTQQANLVKHN-RLHSG 430
H+ HTGE PY C C ++F Q+ +L H +LHSG
Sbjct: 83 RLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 64/136 (47%), Gaps = 23/136 (16%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
+G C C K F + L H + HTGEKP+ C C K + ++ NL
Sbjct: 3 SGSSGVECPTCHKKFLSKYYLKVHNRKHTGEKPFECPKCGKCYFRKENLL---------- 52
Query: 153 RDLFLVNLGTHER---IHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKA 209
HE ++ E+ F C VC +TF ++ L HM +HTGE PY C C +
Sbjct: 53 ---------EHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQ 103
Query: 210 FTQRANLLKH-IRVHT 224
F Q+ +L H I++H+
Sbjct: 104 FMQKKDLQSHMIKLHS 119
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 54/115 (46%), Gaps = 23/115 (20%)
Query: 87 THERIHTGERPFRCEVCMKTFTQQPNLWKHMK---THTGEKPYNCGMCDKAFTQRANLWG 143
H R HTGE+PF C C K + ++ NL +H + E+ + C +C + F +R
Sbjct: 25 VHNRKHTGEKPFECPKCGKCYFRKENLLEHEARNCMNRSEQVFTCSVCQETFRRR----- 79
Query: 144 SWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHM-KTHTG 197
+ L H HTGE P++C C + F Q+ +L HM K H+G
Sbjct: 80 --------------MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 336 NLGTHER---IHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRAN 392
NL HE ++ E+ F C VC +TF ++ L HM +HTGE PY C C + F Q+ +
Sbjct: 50 NLLEHEARNCMNRSEQVFTCSVCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKD 109
Query: 393 LLKH-IRVHTG 402
L H I++H+G
Sbjct: 110 LQSHMIKLHSG 120
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Query: 335 VNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHM-KTHTG 374
+ L H HTGE P++C C + F Q+ +L HM K H+G
Sbjct: 80 MELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHSG 120
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
+G+K Y C C K+FT ++ +H+ +H G RPY C +CGK+F + +LV H ++H+G +
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 433 PYHCRYCTKTFIQQSNLDRH 452
PY C C K F+ + + RH
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
+G++ + C+ C K+FT + +HM H G +PY CG+C K F + +L+ H+++HTG +
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 405 PYSCKLCGKRFTQQANLVKH 424
PY C +C KRF + + +H
Sbjct: 65 PYECNICAKRFMWRDSFHRH 84
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/83 (39%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
+G++ Y C+ CGK FT ++ +H +H G RPY C C K F + +L H ++HTG+K
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIK 64
Query: 461 PYSCKICWKAFAQTGNLTKHELS 483
PY C IC K F + +H S
Sbjct: 65 PYECNICAKRFMWRDSFHRHVTS 87
Score = 58.9 bits (141), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 20/100 (20%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMK 180
+G+K Y C C K+FT ++ RD H +H G RP+ C VC K
Sbjct: 6 SGDKLYPC-QCGKSFTHKSQ------------RD-------RHMSMHLGLRPYGCGVCGK 45
Query: 181 TFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHI 220
F + +L HMK HTG KPY C +C K F R + +H+
Sbjct: 46 KFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/102 (29%), Positives = 51/102 (50%), Gaps = 20/102 (19%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
+G++ + C+ C K+FT + +HM H G +PY CG+C K F + +L G
Sbjct: 6 SGDKLYPCQ-CGKSFTHKSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVG--------- 55
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 194
H +IHTG +P+ C +C K F + + +H+ +
Sbjct: 56 ----------HMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 57.0 bits (136), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 35/60 (58%)
Query: 82 RSRRSTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
+S+R H +H G RP+ C VC K F + +L HMK HTG KPY C +C K F R +
Sbjct: 22 KSQRDRHMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSF 81
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 340 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHI 397
H +H G RP+ C VC K F + +L HMK HTG KPY C +C K F R + +H+
Sbjct: 28 HMSMHLGLRPYGCGVCGKKFKMKHHLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHV 85
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 371
+L H +IHTG +P+ C +C K F + + +H+ +
Sbjct: 52 HLVGHMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 119
H +IHTG +P+ C +C K F + + +H+ +
Sbjct: 56 HMKIHTGIKPYECNICAKRFMWRDSFHRHVTS 87
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 42/60 (70%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
R ++C+ C K+F+ +L KH +THTGEKPY C C KAF QR++L+ H RVHTG P S
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 39/60 (65%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
R Y C CGK F+ ++L KH R H+GE+PY C C K FIQ+S+L H RVHTG P S
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGPSS 76
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
R ++C+ C K+F+ +L KH +THTGEKPY C C KAF QR++L+ H RVHT
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHT 70
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 40/58 (68%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+ Y C C K+F+ ++L KH R HTGE+PY C CGK F Q+++L+ H+R+H+G P
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/77 (40%), Positives = 41/77 (53%), Gaps = 19/77 (24%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDL 155
R ++C+ C K+F+ +L KH +THTGEKPY C C KAF QR++L G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIG------------ 64
Query: 156 FLVNLGTHERIHTGERP 172
H R+HTG P
Sbjct: 65 -------HHRVHTGSGP 74
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 30/57 (52%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIG 488
R Y C C K+F S+L +H R HTG KPY C C KAF Q +L H G G
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSG 73
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 19/77 (24%)
Query: 124 KPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFT 183
+ Y C C K+F+ ++L H R HTGE+P++C+ C K F
Sbjct: 17 RRYKCDECGKSFSHSSDL-------------------SKHRRTHTGEKPYKCDECGKAFI 57
Query: 184 QQPNLWKHMKTHTGEKP 200
Q+ +L H + HTG P
Sbjct: 58 QRSHLIGHHRVHTGSGP 74
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+L H R HTGE+P++C+ C K F Q+ +L H + HTG P
Sbjct: 33 DLSKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
S H R HTGE+P++C+ C K F Q+ +L H + HTG P
Sbjct: 35 SKHRRTHTGEKPYKCDECGKAFIQRSHLIGHHRVHTGSGP 74
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 30/59 (50%), Positives = 39/59 (66%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+KPY C C +F + NL H VHTGE+PY C +CG +F + ANL H R+HSGE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 38/59 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
++P++C+ C +F + NL H HTGEKPY C +C F + ANL H R+H+GE+P
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 34/59 (57%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
++PY C C F + NL H +H+GE+PY C C F + +NL H R+H+G KP
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
++P++C+ C +F + NL H HTGEKPY C +C F + ANL H R+H+
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHS 69
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/78 (35%), Positives = 39/78 (50%), Gaps = 19/78 (24%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRD 154
++P++C+ C +F + NL H HTGEKPY C +C F + ANL
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLK------------ 62
Query: 155 LFLVNLGTHERIHTGERP 172
TH RIH+GE+P
Sbjct: 63 -------THTRIHSGEKP 73
Score = 55.8 bits (133), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 19/78 (24%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTF 182
+KPY C C +F + NL +H+ +HTGE+P+RC +C F
Sbjct: 15 DKPYKCDRCQASFRYKGNL-------------------ASHKTVHTGEKPYRCNICGAQF 55
Query: 183 TQQPNLWKHMKTHTGEKP 200
+ NL H + H+GEKP
Sbjct: 56 NRPANLKTHTRIHSGEKP 73
Score = 52.4 bits (124), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 29/42 (69%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
NL +H+ +HTGE+P+RC +C F + NL H + H+GEKP
Sbjct: 32 NLASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 28/50 (56%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKH 480
++PY C C +F + NL H+ VHTG KPY C IC F + NL H
Sbjct: 15 DKPYKCDRCQASFRYKGNLASHKTVHTGEKPYRCNICGAQFNRPANLKTH 64
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
++H+ +HTGE+P+RC +C F + NL H + H+GEKP
Sbjct: 34 ASHKTVHTGEKPYRCNICGAQFNRPANLKTHTRIHSGEKP 73
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 60/119 (50%), Gaps = 13/119 (10%)
Query: 355 CMKTFTQQPNLWKHMK-THTGEKPYNCGMC--------DKAFTQRANLLKHIRVHTGERP 405
C +TF+ L H+ H G N +C K+F + L+ HIRVHTGE+P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 406 YSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVK 460
+ C CGK F + NL H R H+GE+P+ C + C + F S+ +H VHT K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 64/126 (50%), Gaps = 14/126 (11%)
Query: 383 CDKAFTQRANLLKHIRV-HTGERPYSCKLC--------GKRFTQQANLVKHNRLHSGERP 433
CD+ F+ L+ H+ + H G + +C GK F + LV H R+H+GE+P
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKP 90
Query: 434 YHCRY--CTKTFIQQSNLDRHERVHTGVKPYSCKI--CWKAFAQTGNLTKHELSAHGIGK 489
+ C + C K F + NL H+R HTG KP+ C+ C + FA + + KH + H K
Sbjct: 91 FPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKH-MHVHTSDK 149
Query: 490 PGVNKG 495
G + G
Sbjct: 150 SGPSSG 155
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/72 (44%), Positives = 43/72 (59%), Gaps = 4/72 (5%)
Query: 337 LGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 392
L H R+HTGE+PF C C K F + NL H +THTGEKP+ C CD+ F ++
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 393 LLKHIRVHTGER 404
KH+ VHT ++
Sbjct: 138 RKKHMHVHTSDK 149
Score = 62.4 bits (150), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 160 LGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 215
L H R+HTGE+PF C C K F + NL H +THTGEKP+ C CD+ F ++
Sbjct: 78 LVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Query: 216 LLKHIRVHTEN 226
KH+ VHT +
Sbjct: 138 RKKHMHVHTSD 148
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 46/99 (46%), Gaps = 23/99 (23%)
Query: 105 KTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGT 162
K+F + L H++ HTGEKP+ C C K F + NL
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENL-------------------KI 110
Query: 163 HERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEK 199
H+R HTGE+PF+CE C + F + KHM HT +K
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 34/57 (59%), Gaps = 4/57 (7%)
Query: 88 HERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 140
H R+HTGE+PF C C K F + NL H +THTGEKP+ C CD+ F ++
Sbjct: 81 HIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 336 NLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEK 376
NL H+R HTGE+PF+CE C + F + KHM HT +K
Sbjct: 107 NLKIHKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 2/47 (4%)
Query: 180 KTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
K+F + L H++ HTGEKP+ C C K F + NL H R HT
Sbjct: 70 KSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHT 116
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 88 HERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEK 124
H+R HTGE+PF+CE C + F + KHM HT +K
Sbjct: 111 HKRTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHS 429
EKPY C C KAF++ + L++H RVHTGE+PY C CGK F+Q + L+ H R+H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHT 457
E+PY C CGK F++ + LV+H R+H+GE+PY C C K F Q S L H+R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+P+ C C K F++ L +H + HTGEKPY C C KAF+Q + L+ H R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 401
E+P+ C C K F++ L +H + HTGEKPY C C KAF+Q + L+ H R+HT
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 32/51 (62%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHE 481
E+PY C C K F + S L +H+RVHTG KPY C C KAF+Q L H+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQ 62
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 19/74 (25%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTF 182
EKPY C C KAF+ R LV H+R+HTGE+P++C C K F
Sbjct: 12 EKPYGCVECGKAFS----------------RSSILVQ---HQRVHTGEKPYKCLECGKAF 52
Query: 183 TQQPNLWKHMKTHT 196
+Q L H + HT
Sbjct: 53 SQNSGLINHQRIHT 66
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 30/47 (63%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
E+P+ C C K F++ L +H + HTGEKPY C C KAF+Q + L
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGL 58
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 24/37 (64%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 373
L H+R+HTGE+P++C C K F+Q L H + HT
Sbjct: 30 LVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/34 (47%), Positives = 23/34 (67%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 121
H+R+HTGE+P++C C K F+Q L H + HT
Sbjct: 33 HQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHT 66
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 34/89 (38%), Positives = 50/89 (56%), Gaps = 6/89 (6%)
Query: 342 RIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRV 399
RIH + P C K +T+ +L H++THTGEKPY C CD F + L +H R
Sbjct: 14 RIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 400 HTGERPYSCKLCGKRFTQQANLVKHNRLH 428
HTG +P+ C +C + F++ +L H + H
Sbjct: 70 HTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 383 CDKAFTQRANLLKHIRVHTGERPYSC--KLCGKRFTQQANLVKHNRLHSGERPYHCRYCT 440
C K +T+ ++L H+R HTGE+PY C + C RF + L +H R H+G +P+ C C
Sbjct: 23 CTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCN 82
Query: 441 KTFIQQSNLDRHERVH 456
++F + +L H + H
Sbjct: 83 RSFSRSDHLALHMKRH 98
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 6/89 (6%)
Query: 394 LKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDR 451
L+ R+H + P C K +T+ ++L H R H+GE+PY C + C F + L R
Sbjct: 10 LEKRRIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTR 65
Query: 452 HERVHTGVKPYSCKICWKAFAQTGNLTKH 480
H R HTG KP+ C +C ++F+++ +L H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALH 94
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 159 NLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 216
+L H R HTGE+P++C E C F + L +H + HTG KP+ CG+C+++F++ +L
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 217 LKHIRVH 223
H++ H
Sbjct: 92 ALHMKRH 98
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 26/67 (38%), Positives = 43/67 (64%), Gaps = 2/67 (2%)
Query: 336 NLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 393
+L H R HTGE+P++C E C F + L +H + HTG KP+ CG+C+++F++ +L
Sbjct: 32 HLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Query: 394 LKHIRVH 400
H++ H
Sbjct: 92 ALHMKRH 98
Score = 58.9 bits (141), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 52/108 (48%), Gaps = 25/108 (23%)
Query: 90 RIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVC 147
RIH + P C K +T+ +L H++THTGEKPY C CD F +
Sbjct: 14 RIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSD-------- 61
Query: 148 HPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
L H R HTG +PF+C VC ++F++ +L HMK H
Sbjct: 62 -----------ELTRHYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%), Gaps = 2/57 (3%)
Query: 87 THERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
H R HTGE+P++C E C F + L +H + HTG KP+ CG+C+++F++ +L
Sbjct: 35 AHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRKHTGAKPFQCGVCNRSFSRSDHL 91
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 6/62 (9%)
Query: 165 RIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRV 222
RIH + P C K +T+ +L H++THTGEKPY C CD F + L +H R
Sbjct: 14 RIHYCDYP----GCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELTRHYRK 69
Query: 223 HT 224
HT
Sbjct: 70 HT 71
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 23/33 (69%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
H R HTG +PF+C VC ++F++ +L HMK H
Sbjct: 66 HYRKHTGAKPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 65.5 bits (158), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 52/89 (58%), Gaps = 3/89 (3%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGE- 403
+G CE+C K F +L +H +H+GEKPY+C +C F ++ + H+R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 404 -RPYSCKLCGKRFTQQANLVKH-NRLHSG 430
+PY C+ CGK F++ +L H ++HSG
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 59.7 bits (143), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGV- 459
+G +C++CGK F +L +H HSGE+PY C C F ++ + H R H G
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 460 -KPYSCKICWKAFAQTGNLTKHELSAH 485
KPY C+ C K F++ +L H H
Sbjct: 63 GKPYICQSCGKGFSRPDHLNGHIKQVH 89
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 334 LVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE--KPYNCGMCDKAFTQRA 391
+ +L H+ H+GE+P+ C VC F ++ + H+++H G KPY C C K F++
Sbjct: 20 VYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPD 79
Query: 392 NLLKHIR-VHTG 402
+L HI+ VH+G
Sbjct: 80 HLNGHIKQVHSG 91
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 45/75 (60%), Gaps = 5/75 (6%)
Query: 153 RDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE--KPYNCGMCDKAF 210
RD++ +N H+ H+GE+P+ C VC F ++ + H+++H G KPY C C K F
Sbjct: 18 RDVYHLN--RHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGF 75
Query: 211 TQRANLLKHIR-VHT 224
++ +L HI+ VH+
Sbjct: 76 SRPDHLNGHIKQVHS 90
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 50/108 (46%), Gaps = 22/108 (20%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAV 152
+G CE+C K F +L +H +H+GEKPY+C +C F ++ +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMS---------- 52
Query: 153 RDLFLVNLGTHERIHTGE--RPFRCEVCMKTFTQQPNLWKHMK-THTG 197
H R H G +P+ C+ C K F++ +L H+K H+G
Sbjct: 53 ---------YHVRSHDGSVGKPYICQSCGKGFSRPDHLNGHIKQVHSG 91
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTENL 227
+G CE+C K F +L +H +H+GEKPY+C +C F ++ + H+R H ++
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE--KPYNCGMCDKAFTQRANLWG 143
H+ H+GE+P+ C VC F ++ + H+++H G KPY C C K F++ +L G
Sbjct: 26 HKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKPYICQSCGKGFSRPDHLNG 83
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHG-I 487
SG C C K F +L+RH+ H+G KPYSC +C F + ++ H S G +
Sbjct: 3 SGSSGVACEICGKIFRDVYHLNRHKLSHSGEKPYSCPVCGLRFKRKDRMSYHVRSHDGSV 62
Query: 488 GKP 490
GKP
Sbjct: 63 GKP 65
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCG 412
C KT+T+ +L H++THTGEKPY+C C F + L +H R HTG RP+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 413 KRFTQQANLVKHNRLH 428
+ F++ +L H + H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 411 CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVKPYSCKICW 468
CGK +T+ ++L H R H+GE+PYHC + C F + L RH R HTG +P+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 469 KAFAQTGNLTKH 480
+AF+++ +L H
Sbjct: 74 RAFSRSDHLALH 85
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 383 CDKAFTQRANLLKHIRVHTGERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCT 440
C K +T+ ++L H+R HTGE+PY C CG +F + L +H R H+G RP+ C+ C
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 73
Query: 441 KTFIQQSNLDRHERVH 456
+ F + +L H + H
Sbjct: 74 RAFSRSDHLALHMKRH 89
Score = 56.6 bits (135), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNL 160
C KT+T+ +L H++THTGEKPY+C C F + L
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSD-------------------EL 54
Query: 161 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
H R HTG RPF+C+ C + F++ +L HMK H
Sbjct: 55 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 89
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 159 NLGTHERIHTGERPFRCE--VCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 216
+L H R HTGE+P+ C+ C F + L +H + HTG +P+ C CD+AF++ +L
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 217 LKHIRVH 223
H++ H
Sbjct: 83 ALHMKRH 89
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 336 NLGTHERIHTGERPFRCE--VCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 393
+L H R HTGE+P+ C+ C F + L +H + HTG +P+ C CD+AF++ +L
Sbjct: 23 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 82
Query: 394 LKHIRVH 400
H++ H
Sbjct: 83 ALHMKRH 89
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 178 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
C KT+T+ +L H++THTGEKPY+C C F + L +H R HT
Sbjct: 14 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/76 (40%), Positives = 46/76 (60%), Gaps = 2/76 (2%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCG 412
C KT+T+ +L H++THTGEKPY+C C F + L +H R HTG RP+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 413 KRFTQQANLVKHNRLH 428
+ F++ +L H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 46/72 (63%), Gaps = 2/72 (2%)
Query: 411 CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVKPYSCKICW 468
CGK +T+ ++L H R H+GE+PYHC + C F + L RH R HTG +P+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 469 KAFAQTGNLTKH 480
+AF+++ +L H
Sbjct: 73 RAFSRSDHLALH 84
Score = 63.2 bits (152), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 383 CDKAFTQRANLLKHIRVHTGERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCT 440
C K +T+ ++L H+R HTGE+PY C CG +F + L +H R H+G RP+ C+ C
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCD 72
Query: 441 KTFIQQSNLDRHERVH 456
+ F + +L H + H
Sbjct: 73 RAFSRSDHLALHMKRH 88
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 47/95 (49%), Gaps = 21/95 (22%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNL 160
C KT+T+ +L H++THTGEKPY+C C F + L
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSD-------------------EL 53
Query: 161 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
H R HTG RPF+C+ C + F++ +L HMK H
Sbjct: 54 TRHYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 159 NLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 216
+L H R HTGE+P+ C+ C F + L +H + HTG +P+ C CD+AF++ +L
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 217 LKHIRVH 223
H++ H
Sbjct: 82 ALHMKRH 88
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 40/67 (59%), Gaps = 2/67 (2%)
Query: 336 NLGTHERIHTGERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 393
+L H R HTGE+P+ C+ C F + L +H + HTG +P+ C CD+AF++ +L
Sbjct: 22 HLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHTGHRPFQCQKCDRAFSRSDHL 81
Query: 394 LKHIRVH 400
H++ H
Sbjct: 82 ALHMKRH 88
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 178 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
C KT+T+ +L H++THTGEKPY+C C F + L +H R HT
Sbjct: 13 CGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
H R HTG RPF+C+ C + F++ +L HMK H
Sbjct: 56 HYRKHTGHRPFQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTENL 227
F CEVC + F +Q +L +H ++HT EKPY CG+C++AFT+R L++H ++H+ NL
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSGNL 58
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 41/54 (75%), Gaps = 1/54 (1%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTG 402
F CEVC + F +Q +L +H ++HT EKPY CG+C++AFT+R L++H ++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 33/44 (75%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
F CEVC + F +Q +L +H ++HT EKPY CG+C++AFT+R L
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLL 46
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 37/54 (68%), Gaps = 1/54 (1%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH-NRLHSG 430
+ C +C +AF ++ +L +H R HT E+PY C LC + FT++ L++H ++HSG
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 28/51 (54%)
Query: 436 CRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
C CT+ F +Q +L RH R HT KPY C +C +AF + L +H H
Sbjct: 5 CEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHS 55
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 35/54 (64%), Gaps = 1/54 (1%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH-ERVHTG 458
+ C++C + F +Q +L +H R H+ E+PY C C + F ++ L RH +++H+G
Sbjct: 3 FVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Query: 144 SWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTG 197
S+VC +L H R HT E+P+ C +C + FT++ L +H K H+G
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 33.5 bits (75), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTG 374
L H R HT E+P+ C +C + FT++ L +H K H+G
Sbjct: 18 LKRHYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 1/36 (2%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTG 122
H R HT E+P+ C +C + FT++ L +H K H+G
Sbjct: 21 HYRSHTNEKPYPCGLCNRAFTRRDLLIRHAQKIHSG 56
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 46/100 (46%)
Query: 402 GERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
G Y C +C + + +L +H +HS E+ Y CRYC K F +HE HTG +
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 462 YSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNTHNC 501
Y C C K+F ++ H S H G +K H C
Sbjct: 79 YQCLACGKSFINYQFMSSHIKSVHSQDPSGDSKLYRLHPC 118
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 40/85 (47%)
Query: 340 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRV 399
+E I G + C VC +++ +L +H H+ EK Y C C+K F KH
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 400 HTGERPYSCKLCGKRFTQQANLVKH 424
HTGER Y C CGK F + H
Sbjct: 73 HTGERRYQCLACGKSFINYQFMSSH 97
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%)
Query: 374 GEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
G Y C +C +++ +L +H +H+ E+ Y C+ C K F KH H+GER
Sbjct: 19 GRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERR 78
Query: 434 YHCRYCTKTFIQQSNLDRH 452
Y C C K+FI + H
Sbjct: 79 YQCLACGKSFINYQFMSSH 97
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/113 (28%), Positives = 48/113 (42%), Gaps = 19/113 (16%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVC 147
+E I G + C VC +++ +L +H H+ EK Y C C+K F
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVF------------ 60
Query: 148 HPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
P A HE HTGER ++C C K+F + H+K+ + P
Sbjct: 61 -PLA------EYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 157 LVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 216
L +L H IH+ E+ + C C K F KH HTGE+ Y C C K+F +
Sbjct: 35 LTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM 94
Query: 217 LKHIR-VHTEN 226
HI+ VH+++
Sbjct: 95 SSHIKSVHSQD 105
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 334 LVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 393
L +L H IH+ E+ + C C K F KH HTGE+ Y C C K+F +
Sbjct: 35 LTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFM 94
Query: 394 LKHIR-VHTGE 403
HI+ VH+ +
Sbjct: 95 SSHIKSVHSQD 105
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 29/62 (46%)
Query: 163 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRV 222
+E I G + C VC +++ +L +H H+ EK Y C C+K F KH
Sbjct: 13 YELIVDGRVYYICIVCKRSYVCLTSLRRHFNIHSWEKKYPCRYCEKVFPLAEYRTKHEIH 72
Query: 223 HT 224
HT
Sbjct: 73 HT 74
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 331 LPLLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
PL HE HTGER ++C C K+F + H+K+ + P
Sbjct: 60 FPLAEYRTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 23/41 (56%)
Query: 85 RSTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
R+ HE HTGER ++C C K+F + H+K+ + P
Sbjct: 66 RTKHEIHHTGERRYQCLACGKSFINYQFMSSHIKSVHSQDP 106
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 55.5 bits (132), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 5/80 (6%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKL-- 410
C + + L H+ HTGEKP+ C C+K FT +L +H HTGE+ ++C
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDG 70
Query: 411 CGKRFTQQANLVKH-NRLHS 429
C RFT +AN+ KH NR H+
Sbjct: 71 CDLRFTTKANMKKHFNRFHN 90
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 160 LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 215
L H HTGE+PF C E C K FT +L +H THTGEK + C CD FT +AN
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 216 LLKHI-RVH 223
+ KH R H
Sbjct: 81 MKKHFNRFH 89
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 39/69 (56%), Gaps = 5/69 (7%)
Query: 337 LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRAN 392
L H HTGE+PF C E C K FT +L +H THTGEK + C CD FT +AN
Sbjct: 21 LQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKAN 80
Query: 393 LLKHI-RVH 400
+ KH R H
Sbjct: 81 MKKHFNRFH 89
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 34/59 (57%), Gaps = 4/59 (6%)
Query: 87 THERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANL 141
H HTGE+PF C E C K FT +L +H THTGEK + C CD FT +AN+
Sbjct: 23 AHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANM 81
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 40/90 (44%), Gaps = 6/90 (6%)
Query: 404 RPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGV 459
+ Y C CG + + L H H+GE+P+ C+ C K F +L RH HTG
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHTGE 61
Query: 460 KPYSCKI--CWKAFAQTGNLTKHELSAHGI 487
K ++C C F N+ KH H I
Sbjct: 62 KNFTCDSDGCDLRFTTKANMKKHFNRFHNI 91
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 39/94 (41%), Gaps = 23/94 (24%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNL 160
C + + L H+ HTGEKP+ C C+K FT L +L
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTS-------------------LHHL 51
Query: 161 GTHERIHTGERPFRCEV--CMKTFTQQPNLWKHM 192
H HTGE+ F C+ C FT + N+ KH
Sbjct: 52 TRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 178 CMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
C + + L H+ HTGEKP+ C C+K FT +L +H HT
Sbjct: 11 CGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRHSLTHT 59
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 376 KPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHS 429
+PY C + CD+ F++ L +HIR+HTG++P+ C++C + F++ +L H R H+
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 41/68 (60%), Gaps = 4/68 (5%)
Query: 392 NLLKHIRVHTGERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNL 449
NLL + V RPY+C + C +RF++ L +H R+H+G++P+ CR C + F + +L
Sbjct: 8 NLLNY--VVPKMRPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
Query: 450 DRHERVHT 457
H R HT
Sbjct: 66 TTHIRTHT 73
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 171 RPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
RP+ C V C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 348 RPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHT 401
RP+ C V C + F++ L +H++ HTG+KP+ C +C + F++ +L HIR HT
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/51 (43%), Positives = 32/51 (62%), Gaps = 2/51 (3%)
Query: 432 RPYHC--RYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKH 480
RPY C C + F + L RH R+HTG KP+ C+IC + F+++ +LT H
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHLTTH 68
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 21/75 (28%)
Query: 124 KPYNCGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKT 181
+PY C + CD+ F++ L H RIHTG++PF+C +CM+
Sbjct: 18 RPYACPVESCDRRFSRSDEL-------------------TRHIRIHTGQKPFQCRICMRN 58
Query: 182 FTQQPNLWKHMKTHT 196
F++ +L H++THT
Sbjct: 59 FSRSDHLTTHIRTHT 73
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 373
L H RIHTG++PF+C +CM+ F++ +L H++THT
Sbjct: 37 LTRHIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 27/34 (79%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 121
H RIHTG++PF+C +CM+ F++ +L H++THT
Sbjct: 40 HIRIHTGQKPFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 31/48 (64%), Gaps = 2/48 (4%)
Query: 96 RPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
RP+ C V C + F++ L +H++ HTG+KP+ C +C + F++ +L
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQCRICMRNFSRSDHL 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKH 219
+PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKH 396
+PF+C +CM+ F++ +L H++THTGEKP+ C +C + F + +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 31/42 (73%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQ 137
+PF+C +CM+ F++ +L H++THTGEKP+ C +C + F +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFAR 43
Score = 52.8 bits (125), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH 424
KP+ C +C + F++ +L HIR HTGE+P++C +CG++F + +H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAH 485
+P+ CR C + F + +L H R HTG KP++C IC + FA++ +H H
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDIQH 55
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERV 455
+P+ C++C + F++ +L H R H+GE+P+ C C + F + RH +
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHTGEKPFACDICGRKFARSDERKRHRDI 53
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 19/68 (27%)
Query: 124 KPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFT 183
KP+ C +C + F++ +L TH R HTGE+PF C++C + F
Sbjct: 2 KPFQCRICMRNFSRSDHLT-------------------THIRTHTGEKPFACDICGRKFA 42
Query: 184 QQPNLWKH 191
+ +H
Sbjct: 43 RSDERKRH 50
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKH 368
L TH R HTGE+PF C++C + F + +H
Sbjct: 19 LTTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKH 116
+TH R HTGE+PF C++C + F + +H
Sbjct: 20 TTHIRTHTGEKPFACDICGRKFARSDERKRH 50
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 459 VKPYSCKICWKAFAQTGNLTKHELSAHGIGKP 490
+KP+ C+IC + F+++ +LT H + H KP
Sbjct: 1 MKPFQCRICMRNFSRSDHLTTH-IRTHTGEKP 31
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KP+ C +C + F++ +L HIR HT
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 21/31 (67%), Positives = 25/31 (80%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY CG C KAF Q+ANL +H R+HTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F Q+ANL +H R+H+GE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/27 (66%), Positives = 21/27 (77%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY CG C KAF Q+ANL +H R+HT
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHT 36
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q++NL +H+R+HTG KP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+RC C K F Q+ NL +H + HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+RC C K F Q+ NL +H + HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+RC C K F Q+ NL +H + HTGEKP
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY CG C KAF Q+ANL H+RIHTGE+P
Sbjct: 10 EKPYRCGECGKAFAQKANLT-------------------QHQRIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/22 (63%), Positives = 16/22 (72%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
KPY C C KAFAQ NLT+H+
Sbjct: 11 KPYRCGECGKAFAQKANLTQHQ 32
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 31/54 (57%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVH 456
ERP+ C CGK + + L +H R H G RP C C K F QS ++RH +VH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 27/50 (54%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKH 480
ERP+ C +C KT+ S L RH R H G +P SC C K F + +H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRH 51
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
ERPF C C KT+ L +H + H G +P +C C K F ++ + +H++VH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 400
ERPF C C KT+ L +H + H G +P +C C K F ++ + +H++VH
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLH 428
E+P+ C C K + + L +H R H G RP SC CGK F Q+ + +H ++H
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 25/47 (53%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
ERPF C C KT+ L +H + H G +P +C C K F ++ +
Sbjct: 2 ERPFFCNFCGKTYRDASGLSRHRRAHLGYRPRSCPECGKCFRDQSEV 48
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 28/73 (38%), Gaps = 19/73 (26%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTF 182
E+P+ C C K + RD L H R H G RP C C K F
Sbjct: 2 ERPFFCNFCGKTY-----------------RDA--SGLSRHRRAHLGYRPRSCPECGKCF 42
Query: 183 TQQPNLWKHMKTH 195
Q + +H+K H
Sbjct: 43 RDQSEVNRHLKVH 55
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 372
L H R H G RP C C K F Q + +H+K H
Sbjct: 20 LSRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
Score = 33.1 bits (74), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 18/35 (51%)
Query: 86 STHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
S H R H G RP C C K F Q + +H+K H
Sbjct: 21 SRHRRAHLGYRPRSCPECGKCFRDQSEVNRHLKVH 55
>pdb|2EMH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
491- 523) Of Human Zinc Finger Protein 484
Length = 46
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 26/31 (83%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
ERPY C +CGK FT ++NL+KH ++H+GE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 26/31 (83%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E+PY C +C KAFT R+NL+KH ++HTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
ERP+ C VC K FT + NL KH K HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
ERP+ C VC K FT + NL KH K HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
ERP+ C VC K FT + NL KH K HTGEKP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
ERPY C C K F +SNL +H+++HTG KP
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+PY C +C KAFT R+NL+KH ++HT
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIHT 36
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
E+PY C +C KAFT R+NL H++IHTGE+P
Sbjct: 10 ERPYICTVCGKAFTDRSNLI-------------------KHQKIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
+PY C +C KAF NL KH+
Sbjct: 11 RPYICTVCGKAFTDRSNLIKHQ 32
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C KAFTQ+A+L +H + HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C+VC K FTQ+ +L +H KTHTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C+VC K FTQ+ +L +H KTHTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C+VC K FTQ+ +L +H KTHTGEKP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY CK+C K FTQ+A+L +H + H+GE+P
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C+ C+K F Q+++L +H++ HTG KP
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHTGEKP 40
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C KAFTQ+A+L +H + HT
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C KAFTQ+A +L H++ HTGE+P
Sbjct: 10 EKPYECKVCSKAFTQKA-------------------HLAQHQKTHTGEKP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 460 KPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKG 495
KPY CK+C KAF Q +L +H+ + G G + G
Sbjct: 11 KPYECKVCSKAFTQKAHLAQHQKTHTGEKPSGPSSG 46
>pdb|2EP3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
631- 663) Of Human Zinc Finger Protein 484
Length = 46
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAFT R+NL H ++HTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+RC C K FT + NL+ H K HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+RC C K FT + NL+ H K HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+RC C K FT + NL+ H K HTGEKP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FT ++NL H ++H+GE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 26/50 (52%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAFT R+NL+ TH++IHTGE+P
Sbjct: 10 EKPYRCAECGKAFTDRSNLF-------------------THQKIHTGEKP 40
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAFT R+NL H ++HT
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHT 36
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F +SNL H+++HTG KP
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIHTGEKP 40
>pdb|2YTB|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 5 In
Zinc Finger Protein 32
Length = 42
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 20/33 (60%), Positives = 24/33 (72%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
EKPY C C KAF+Q+ +L+ HIRVHTG P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF+Q+ +L+ HIRVHT
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHT 35
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F+Q+ +L+ H R+H+G P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+RC+ C K F+Q+ +L H++ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+RC+ C K F+Q+ +L H++ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+RC+ C K F+Q+ +L H++ HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGP 39
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 20/33 (60%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
E+PY C C K F Q+ +L H RVHTG P S
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVHTGSGPSS 41
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF+Q+ +L H R+HTG P
Sbjct: 9 EKPYRCDQCGKAFSQKGSLI-------------------VHIRVHTGSGP 39
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 14/21 (66%)
Query: 460 KPYSCKICWKAFAQTGNLTKH 480
KPY C C KAF+Q G+L H
Sbjct: 10 KPYRCDQCGKAFSQKGSLIVH 30
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 169 GERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 223
G C C K F L H++THTGEKPY C C+ A Q+ +L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 28/55 (50%)
Query: 346 GERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVH 400
G C C K F L H++THTGEKPY C C+ A Q+ +L H+ H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 25/48 (52%)
Query: 94 GERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
G C C K F L H++THTGEKPY C C+ A Q+ +L
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSL 48
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 24/45 (53%)
Query: 436 CRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKH 480
C YC K F L+ H R HTG KPY C+ C A AQ +L H
Sbjct: 7 CSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYH 51
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 25/55 (45%)
Query: 374 GEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLH 428
G C C K F L H+R HTGE+PY C+ C Q+ +L H H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Query: 402 GERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH-ERVH 456
G C CGK F L H R H+GE+PY C +C Q+++L H ER H
Sbjct: 1 GSSSRECSYCGKFFRSNYYLNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERHH 56
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 160 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 195
L H R HTGE+P++CE C Q+ +L H++ H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 22/36 (61%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 372
L H R HTGE+P++CE C Q+ +L H++ H
Sbjct: 20 LNIHLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTH 120
H R HTGE+P++CE C Q+ +L H++ H
Sbjct: 23 HLRTHTGEKPYKCEFCEYAAAQKTSLRYHLERH 55
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY CK CGK F+Q +L++H R+H+GE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF+Q +L++H RVHTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C+ C K F Q ++L +H+RVHTG KP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF+Q +L++H RVHT
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C+ C K F+Q +L +H + HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C+ C K F+Q +L +H + HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C+ C K F+Q +L +H + HTGEKP
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHTGEKP 40
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF+Q +L H+R+HTGE+P
Sbjct: 10 EKPYECKECGKAFSQTTHLI-------------------QHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 13/22 (59%), Positives = 17/22 (77%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
KPY CK C KAF+QT +L +H+
Sbjct: 11 KPYECKECGKAFSQTTHLIQHQ 32
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 370 KTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTGE---RPYSCKLCGKRFTQQANLVKH 424
+THTGEKPY C CDK F Q+ L H R H + C CGK FT++ + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARH 66
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 161 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK----PYNCGMCDKAFTQRANL 216
G+ R HTGE+P+ C C KTF Q+ L H K + + C C K FT+R +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 217 LKHI 220
+H
Sbjct: 64 ARHA 67
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 338 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK----PYNCGMCDKAFTQRANL 393
G+ R HTGE+P+ C C KTF Q+ L H K + + C C K FT+R +
Sbjct: 4 GSSGRTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
Query: 394 LKHI 397
+H
Sbjct: 64 ARHA 67
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 39/78 (50%), Gaps = 5/78 (6%)
Query: 426 RLHSGERPYHCRYCTKTFIQQSNLDRH-ERVHTG---VKPYSCKICWKAFAQTGNLTKHE 481
R H+GE+PY C +C KTF Q+ LD H +R H + C C K F + + +H
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTMARHA 67
Query: 482 LSAHG-IGKPGVNKGTNT 498
+ G G G N G ++
Sbjct: 68 DNCAGPDGVEGENSGPSS 85
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/53 (43%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 193 KTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTENL-----------KLYTRR 233
+THTGEKPY C CDK F Q+ L H R H N K +TRR
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRR 60
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 15/80 (18%)
Query: 118 KTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEV 177
+THTGEKPY C CDK F Q + L ++ + + F C
Sbjct: 8 RTHTGEKPYACSHCDKTFRQ---------------KQLLDMHFKRYHDPNFVPAAFVCSK 52
Query: 178 CMKTFTQQPNLWKHMKTHTG 197
C KTFT++ + +H G
Sbjct: 53 CGKTFTRRNTMARHADNCAG 72
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
Query: 90 RIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK----PYNCGMCDKAFTQRANL 141
R HTGE+P+ C C KTF Q+ L H K + + C C K FT+R +
Sbjct: 8 RTHTGEKPYACSHCDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSKCGKTFTRRNTM 63
>pdb|2YTA|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 3 In
Zinc Finger Protein 32
Length = 41
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+GE+PY CK CGK F+Q+ +L H RLH+G P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 25/35 (71%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
SGE+PY C+ C K+F Q+ +L HER+HTG P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/35 (54%), Positives = 24/35 (68%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
+GEKPY C C K+F+QR +L H R+HTG P S
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGPSS 40
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C K+F+QR +L H R+HT
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHT 34
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+GE+P++C+ C K+F+Q+ +L H + HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+GE+P++C+ C K+F+Q+ +L H + HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 24/33 (72%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+GE+P++C+ C K+F+Q+ +L H + HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHERLHTGSGP 38
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 19/52 (36%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+GEKPY C C K+F+QR +L HER+HTG P
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLA-------------------VHERLHTGSGP 38
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 18/25 (72%)
Query: 457 TGVKPYSCKICWKAFAQTGNLTKHE 481
+G KPY CK C K+F+Q G+L HE
Sbjct: 6 SGEKPYQCKECGKSFSQRGSLAVHE 30
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 25/31 (80%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K+FIQ+S+L+RH R+HTG KP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K+F Q+++L +H R+HTGE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F Q+++L +H R+H+GE+P
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C K+F Q+ +L +H + HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C K+F Q+ +L +H + HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C K+F Q+ +L +H + HTGEKP
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K+F Q+++L +H R+HT
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K+F Q++ +L H RIHTGE+P
Sbjct: 10 EKPYICNECGKSFIQKS-------------------HLNRHRRIHTGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF+Q + L +H R+HTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F+Q + L +H R+H+GE+P
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S L RH+R+HTG KP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F+Q L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F+Q L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F+Q L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF+Q + L +H R+HT
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIHT 36
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF+Q + L H+RIHTGE+P
Sbjct: 10 EKPYKCNECGKAFSQTS-------------------KLARHQRIHTGEKP 40
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
KPY C C KAF+QT L +H+
Sbjct: 11 KPYKCNECGKAFSQTSKLARHQ 32
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ CG C K++ QR +L +H RVHTGE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C CGK + Q+ +L +H R+H+GE+P
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+C C K++ Q+ +L +H + HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+C C K++ Q+ +L +H + HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+C C K++ Q+ +L +H + HTGEKP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ CG C K++ QR +L +H RVHT
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHT 36
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K++ Q+ +L +H+RVHTG KP
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVHTGEKP 40
Score = 35.4 bits (80), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ CG C K++ QR V+L H+R+HTGE+P
Sbjct: 10 EKPFKCGECGKSYNQR-------------------VHLTQHQRVHTGEKP 40
>pdb|2ENH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
556- 588) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C KAF+ A+L +H RVH+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C +C K F+ A+L +H R+HSGE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C+VC K F+ +L +H + H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C+VC K F+ +L +H + H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C+VC K F+ +L +H + H+GEKP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F ++L +H+RVH+G KP
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHSGEKP 40
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C KAF+ A+L +H RVH+
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C KAF+ A+L H+R+H+GE+P
Sbjct: 10 EKPYECDVCRKAFSHHASLT-------------------QHQRVHSGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 460 KPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKG 495
KPY C +C KAF+ +LT+H+ G G + G
Sbjct: 11 KPYECDVCRKAFSHHASLTQHQRVHSGEKPSGPSSG 46
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH 452
Y C+ CG R + + L KH R H+ RPYHC YC +F + NL +H
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 26/50 (52%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELS 483
Y C C + S L +H R HT V+PY C C +F GNLTKH S
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIR 221
+ CE C + L KH++THT +PY+C C+ +F + NL KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 29/49 (59%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIR 398
+ CE C + L KH++THT +PY+C C+ +F + NL KH++
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMK 50
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 23/47 (48%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH 424
Y C C + + L KHIR HT RPY C C F + NL KH
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKH 48
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 25/50 (50%)
Query: 145 WVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 194
++C +R L H R HT RP+ C C +F + NL KHMK+
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANL 141
+ CE C + L KH++THT +PY+C C+ +F + NL
Sbjct: 2 YICEECGIRXKKPSMLKKHIRTHTDVRPYHCTYCNFSFKTKGNL 45
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 371
L H R HT RP+ C C +F + NL KHMK+
Sbjct: 17 LKKHIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKT 119
H R HT RP+ C C +F + NL KHMK+
Sbjct: 20 HIRTHTDVRPYHCTYCNFSFKTKGNLTKHMKS 51
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
ERP+ C CGK F Q A+L++H R+H+GE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E+P+ C C K+F Q A+L++H R+HTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
ERP+ C C K+FIQ ++L +H+R+HTG KP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
ERP +C C K+F Q +L +H + HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
ERP +C C K+F Q +L +H + HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
ERP +C C K+F Q +L +H + HTGEKP
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+P+ C C K+F Q A+L++H R+HT
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIHT 36
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
E+P+ C C K+F Q A+L H+RIHTGE+P
Sbjct: 10 ERPHKCNECGKSFIQSAHLI-------------------QHQRIHTGEKP 40
>pdb|2ENA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
311- 343) Of Human Zinc Finger Protein 224
Length = 46
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 23/33 (69%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
T EKP+ C CDK+F QR+ L H +HTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 161 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
G+ T E+PFRC+ C K+F Q+ L H HTGEKP
Sbjct: 1 GSSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 338 GTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
G+ T E+PFRC+ C K+F Q+ L H HTGEKP
Sbjct: 1 GSSGSSGTAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 22/33 (66%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
T E+PFRC+ C K+F Q+ L H HTGEKP
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K+F Q+S L+ H +HTG KP
Sbjct: 10 EKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
T EKP+ C CDK+F QR+ L H +HT
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHT 36
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
T E+P+ C C K F Q++ L H +H+GE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRSALNSHRMIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 24/52 (46%), Gaps = 19/52 (36%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
T EKP+ C CDK+F QR+ L +H IHTGE+P
Sbjct: 8 TAEKPFRCDTCDKSFRQRS-------------------ALNSHRMIHTGEKP 40
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAFT R+NL+KH ++HT ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FT ++NL+KH ++H+ ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHTEN 226
EKPY C C KAFT R+NL+KH ++HT+
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQ 38
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F +SNL +H+++HT KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C K FT + NL KH K HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C K FT + NL KH K HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C K FT + NL KH K HT +KP
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQKP 40
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAFT R+NL H++IHT ++P
Sbjct: 10 EKPYICAECGKAFTIRSNLI-------------------KHQKIHTKQKP 40
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C+ CGKRFTQ ++L H R+H+GE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+CE C K FTQ +L H + HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+CE C K FTQ +L H + HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+CE C K FTQ +L H + HTGEKP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K FTQ ++L H RVHTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F Q S+L H+RVHTG KP
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C K FTQ ++L H RVHT
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 32.0 bits (71), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ C C K FTQ ++L +H+R+HTGE+P
Sbjct: 10 EKPFQCEECGKRFTQNSHLH-------------------SHQRVHTGEKP 40
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 22/30 (73%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
KPY C C KAF+Q + L +H RVHTGE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+PY C C K F Q S L RH+RVHTG KP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+PY C CGK F+Q + L +H R+H+GE+P
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+P++C C K F+Q L +H + HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+P++C C K F+Q L +H + HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+P++C C K F+Q L +H + HTGEKP
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C KAF+Q + L +H RVHT
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQRVHT 36
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 19/49 (38%)
Query: 124 KPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
KPY C C KAF+Q + L H+R+HTGE+P
Sbjct: 11 KPYQCNECGKAFSQTS-------------------KLARHQRVHTGEKP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
KPY C C KAF+QT L +H+
Sbjct: 11 KPYQCNECGKAFSQTSKLARHQ 32
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C+ CGKRFTQ + L H R+H+GE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+CE C K FTQ L H + HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+CE C K FTQ L H + HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+CE C K FTQ L H + HTGEKP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K FTQ + L H RVHTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F Q S L H+RVHTG KP
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C K FTQ + L H RVHT
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ C C K FTQ + L +H+R+HTGE+P
Sbjct: 10 EKPFKCEECGKRFTQNSQLH-------------------SHQRVHTGEKP 40
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F A LV+H R+H+GE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF A L++H R+HTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C YC K F + L RH+R+HTG KP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C+ C K F L +H + HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C+ C K F L +H + HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C+ C K F L +H + HTGEKP
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF A L++H R+HT
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIHT 36
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF A L VR H+RIHTGE+P
Sbjct: 10 EKPYVCDYCGKAFGLSAEL----------VR---------HQRIHTGEKP 40
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S+L H+R+HTGVKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FTQ ++L H R+H+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K FTQ ++L H R+HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K FTQ +L H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K FTQ +L H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K FTQ +L H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVKP 40
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K FTQ ++L H R+HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHT 36
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K FTQ + +L H+RIHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNS-------------------HLANHQRIHTGVKP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 25/31 (80%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C++CGK F ++LV+H+ +HSGERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C KAF ++L++H VH+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C+VC K F +L +H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C+VC K F +L +H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C+VC K F +L +H H+GE+P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C+ C K F S+L +H VH+G +P
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGERP 40
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C KAF ++L++H VH+
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C KAF ++L H +H+GERP
Sbjct: 10 EKPYKCQVCGKAFRVSSHLV-------------------QHHSVHSGERP 40
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 460 KPYSCKICWKAFAQTGNLTKH 480
KPY C++C KAF + +L +H
Sbjct: 11 KPYKCQVCGKAFRVSSHLVQH 31
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K FTQ ++L H R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FTQ ++L H R+H+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S+L H R+HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K FTQ +L H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K FTQ +L H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K FTQ +L H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K FTQ ++L H R+HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K FTQ ++L W RIHTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHW-------------------RIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C KAF ++NL+ H R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF C C K F + NL H +THTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF C C K F + NL H +THTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF C C K F + NL H +THTGEKP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C C K F ++NL+ H R H+GE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F +SNL H+R HTG KP
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHTGEKP 40
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C KAF ++NL+ H R HT
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ C C KAF ++NL H+R HTGE+P
Sbjct: 10 EKPFECSECQKAFNTKSNLI-------------------VHQRTHTGEKP 40
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPYNC C KAF + L +H R+HTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY+C C K FI S L H+R+HTG KP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY+C+ CGK F + L +H R+H+GE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ CE C K F L +H + HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ CE C K F L +H + HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ CE C K F L +H + HTGEKP
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPYNC C KAF + L +H R+HT
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPYNC C KAF + L H+RIHTGE+P
Sbjct: 10 EKPYNCEECGKAFIHDSQLQ-------------------EHQRIHTGEKP 40
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 383 CDKAFTQRANLLKHIRVHTGERPYSC--KLCGKRFTQQANLVKHNRLH 428
C K + + ++L H R HTGE+P+SC K C +RF + L +H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 29/44 (65%), Gaps = 2/44 (4%)
Query: 439 CTKTFIQQSNLDRHERVHTGVKPYSC--KICWKAFAQTGNLTKH 480
C KT+ + S+L H R HTG KP+SC K C + FA++ L++H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRH 68
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 178 CMKTFTQQPNLWKHMKTHTGEKPYNCG--MCDKAFTQRANLLKHIRVH 223
C KT+ + +L H +THTGEKP++C C++ F + L +H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 355 CMKTFTQQPNLWKHMKTHTGEKPYNCG--MCDKAFTQRANLLKHIRVH 400
C KT+ + +L H +THTGEKP++C C++ F + L +H R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
Query: 411 CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVH 456
CGK + + ++L H R H+GE+P+ C + C + F + L RH R H
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 35.8 bits (81), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 103 CMKTFTQQPNLWKHMKTHTGEKPYNCG--MCDKAFTQRANL 141
C KT+ + +L H +THTGEKP++C C++ F + L
Sbjct: 25 CGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
Score = 35.4 bits (80), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 144 SWVC-HPTAVRDLFLVN-LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTH 195
S +C HP + F + L H R HTGE+PF C + C + F + L +H +TH
Sbjct: 17 SHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 336 NLGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTH 372
+L H R HTGE+PF C + C + F + L +H +TH
Sbjct: 34 HLKAHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 87 THERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTH 120
H R HTGE+PF C + C + F + L +H +TH
Sbjct: 37 AHTRTHTGEKPFSCSWKGCERRFARSDELSRHRRTH 72
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF+ ++ L+ H+R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F+ ++ L+ H R HSGE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C K F+ + L HM+TH+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C K F+ + L HM+TH+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C K F+ + L HM+TH+GEKP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF+ ++ L+ H+R H+
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F +S L H R H+G KP
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHSGEKP 40
Score = 29.6 bits (65), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF+ ++ L H R H+GE+P
Sbjct: 10 EKPYGCSECGKAFSSKSYLI-------------------IHMRTHSGEKP 40
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+G KPY C C KAF ++ L+ H+R HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+G +PY C CGK F ++ L+ H R H+GE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+G +P+ C C K F + L HM+THTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+G +P+ C C K F + L HM+THTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+G +P+ C C K F + L HM+THTGEKP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+G KPY C C KAF ++ L+ H+R HT
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHT 34
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 19/33 (57%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
SG +PY C C K F +S L H R HTG KP
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLIIHMRTHTGEKP 38
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 21/52 (40%), Gaps = 19/52 (36%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+G KPY C C KAF ++ L H R HTGE+P
Sbjct: 6 SGVKPYGCSECGKAFRSKSYLI-------------------IHMRTHTGEKP 38
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FTQ ++LV+H +H+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K FTQ ++L++H +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S+L RH +HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K FTQ ++L++H +HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K FTQ ++L VR H IHTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHL----------VR---------HRGIHTGEKP 40
>pdb|2EM1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
637- 667) Of Human Zinc Finger Protein 268
Length = 44
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/33 (54%), Positives = 24/33 (72%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+GEKPY+C C KAFT ++ L+ H VHTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/33 (57%), Positives = 22/33 (66%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
SGE+PY C C K F +S L H+ VHTGVKP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+GE+PYSC CGK FT ++ L+ H +H+G +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY+C C KAFT ++ L+ H VHT
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHT 34
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+GE+P+ C C K FT + L H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+GE+P+ C C K FT + L H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+GE+P+ C C K FT + L H HTG KP
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLIVHKGVHTGVKP 38
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 19/52 (36%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+GEKPY+C C KAFT ++ L H+ +HTG +P
Sbjct: 6 SGEKPYSCNECGKAFTFKSQLI-------------------VHKGVHTGVKP 38
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S+L RH RVHTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K FTQ ++L +H RVHTG +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FTQ ++L +H R+H+G +P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K FTQ +L +H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K FTQ +L +H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K FTQ +L +H + HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHTGGKP 40
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K FTQ ++L +H RVHT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K FTQ + +L H R+HTG +P
Sbjct: 10 EKPYKCNECGKVFTQNS-------------------HLARHRRVHTGGKP 40
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 24/31 (77%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C K+FT+++ L H ++HTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C +CGK FT+++ L H ++H+GE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C +C K+FT++ L H + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C +C K+FT++ L H + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C +C K+FT++ L H + HTGEKP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K+F ++S L H+++HTG KP
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C K+FT+++ L H ++HT
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIHT 36
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C K+FT+++ L H++IHTGE+P
Sbjct: 10 EKPYECSICGKSFTKKSQLH-------------------VHQQIHTGEKP 40
>pdb|2EM9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
367- 399) Of Human Zinc Finger Protein 224
Length = 46
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/31 (61%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPYNC C K+F + LLKH RVH+GE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY+CK CGK F + L+KH R+HSGE+P
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY+C+ C K+F S L +H+RVH+G KP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPYNC C K+F + LLKH RVH+
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHS 36
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C+ C K+F L KH + H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C+ C K+F L KH + H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C+ C K+F L KH + H+GEKP
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHSGEKP 40
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPYNC C K+F W S L H+R+H+GE+P
Sbjct: 10 EKPYNCKECGKSFR-----WASC--------------LLKHQRVHSGEKP 40
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C KAF Q +L H+R+HTGE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ CK CGK F Q +L H R+H+GE+P
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+C+ C K F Q +L H++ HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+C+ C K F Q +L H++ HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+C+ C K F Q +L H++ HTGEKP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C+ C K F Q +L H R+HTG KP
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C KAF Q +L H+R+HT
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHT 36
Score = 32.7 bits (73), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ C C KAF Q ++L +H RIHTGE+P
Sbjct: 10 EKPFKCKECGKAFRQN-------------------IHLASHLRIHTGEKP 40
>pdb|2EMW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
301- 331) Of Human Zinc Finger Protein 268
Length = 44
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 24/32 (75%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
+GE+PY C CGK F+ ++ L+ H R+H+GE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
+GEKPY C C K F+ ++ L+ H R+HTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
SGE+PY C C K F +S L H+R+HTG K
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C K F+ ++ L+ H R+HT
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHT 34
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+GE+P+ C C K F+ + L H + HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+GE+P+ C C K F+ + L H + HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+GE+P+ C C K F+ + L H + HTGEK
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLIVHQRIHTGEK 37
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 19/51 (37%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGER 171
+GEKPY C C K F+ ++ L H+RIHTGE+
Sbjct: 6 SGEKPYGCNECGKDFSSKSYLI-------------------VHQRIHTGEK 37
>pdb|2EMG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
463- 495) Of Human Zinc Finger Protein 484
Length = 46
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E P+ C CGK FT + NL+ H ++H+GERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E P+ C C K FT + NL+ H ++HTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E PF C C K FT + NL H K HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E PF C C K FT + NL H K HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E PF C C K FT + NL H K HTGE+P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E P+ C C K F ++NL H+++HTG +P
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHTGERP 40
Score = 32.7 bits (73), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E P+ C C K FT + NL+ H ++HT
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIHT 36
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
E P+ C C K FT + NL H++IHTGERP
Sbjct: 10 ENPFICSECGKVFTHKTNLI-------------------IHQKIHTGERP 40
>pdb|2EML|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
752- 784) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C KAF+ R +L H R+H+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C +CGK F+ + +L H R+HSG++P
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F + +L H+R+H+G KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C KAF+ R +L H R+H+
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C VC K F+ + +L H + H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C VC K F+ + +L H + H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C VC K F+ + +L H + H+G+KP
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHSGKKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C KAF+ R +L H+RIH+G++P
Sbjct: 10 EKPYECSVCGKAFSHRQ-------------------SLSVHQRIHSGKKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/31 (64%), Positives = 22/31 (70%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+GEKPY C C KAFTQ + L H RVHTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+GE+PY C+ CGK FTQ + L H R+H+GE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGE 36
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/30 (60%), Positives = 20/30 (66%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SGE+PY C+ C K F Q S L H RVHTG
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTG 35
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/29 (62%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C KAFTQ + L H RVHT
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHT 34
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
+GE+P+ C+ C K FTQ L H + HTGE + G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
+GE+P+ C+ C K FTQ L H + HTGE + G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
+GE+P+ C+ C K FTQ L H + HTGE + G
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIHRRVHTGESGPSSG 42
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGE 170
+GEKPY C C KAFTQ + L H R+HTGE
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLS-------------------IHRRVHTGE 36
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 457 TGVKPYSCKICWKAFAQTGNLTKH 480
+G KPY C+ C KAF Q+ L+ H
Sbjct: 6 SGEKPYVCQECGKAFTQSSCLSIH 29
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 161 GTHERIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTGE-KPYNCGMCDKAFTQRANLLK 218
G+ R H+GE+P+ C +C FTQ + H ++ HT ++C CD ++++L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 219 HIR 221
H+R
Sbjct: 64 HLR 66
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 2/63 (3%)
Query: 338 GTHERIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTGE-KPYNCGMCDKAFTQRANLLK 395
G+ R H+GE+P+ C +C FTQ + H ++ HT ++C CD ++++L
Sbjct: 4 GSSGRTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGV 63
Query: 396 HIR 398
H+R
Sbjct: 64 HLR 66
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 193 KTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTENLKLY 230
+TH+GEKPY C +C FTQ + HI + HTEN+ +
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKF 46
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 2/54 (3%)
Query: 90 RIHTGERPFRCEVCMKTFTQQPNLWKH-MKTHTGE-KPYNCGMCDKAFTQRANL 141
R H+GE+P+ C +C FTQ + H ++ HT ++C CD ++++L
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDL 61
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
Query: 370 KTHTGEKPYNCGMCDKAFTQRANLLKHI-RVHTGE-RPYSCKLCGKRFTQQANLVKHNR 426
+TH+GEKPY C +C FTQ + HI + HT + C C ++++L H R
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLR 66
Score = 35.8 bits (81), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 454 RVHTGVKPYSCKICWKAFAQTGNLTKHELSAH 485
R H+G KPY C IC F Q+G + H L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKH 39
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 426 RLHSGERPYHCRYCTKTFIQQSNLDRH--ERVHTGVKPYSCKICWKAFAQTGNLTKHELS 483
R HSGE+PY C C F Q + H ++ V + C C A+ +L H
Sbjct: 8 RTHSGEKPYECYICHARFTQSGTMKMHILQKHTENVAKFHCPHCDTVIARKSDLGVHLRK 67
Query: 484 AHGIGKP 490
H P
Sbjct: 68 QHSYSGP 74
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K FTQ ++L +H +HTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 42.0 bits (97), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK FTQ ++L +H +H+GE+P
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F Q S+L RH +HTG KP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K FTQ +L +H HTGEKP
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K FTQ ++L +H +HT
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K FTQ + +L H IHTGE+P
Sbjct: 10 EKPYKCNECGKVFTQNS-------------------HLARHRGIHTGEKP 40
>pdb|2EPT|A Chain A, Solution Structure Of The First C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 41
Score = 42.0 bits (97), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 24/35 (68%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
SG+R Y C+ C K+F Q+ +L HER+HTG P S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+G+R Y C+ CGK F Q+ +L H R+H+G P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
+G++ Y C C K+F Q+ +L H R+HTG P S
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGPSS 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+G+R + C+ C K+F Q+ +L H + HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+G+R + C+ C K+F Q+ +L H + HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+G+R + C+ C K+F Q+ +L H + HTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHTGSGP 38
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+G++ Y C C K+F Q+ +L H R+HT
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHERIHT 34
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 457 TGVKPYSCKICWKAFAQTGNLTKHE 481
+G + Y C+ C K+F Q G+LT HE
Sbjct: 6 SGQRVYECQECGKSFRQKGSLTLHE 30
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 19/52 (36%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+G++ Y C C K+F Q+ +L HERIHTG P
Sbjct: 6 SGQRVYECQECGKSFRQKGSLT-------------------LHERIHTGSGP 38
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K F+Q++ L H R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C KTF Q+S L H+R HTG KP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F+Q++ L H R H+GE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C KTF+Q+ L H +THTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C KTF+Q+ L H +THTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C KTF+Q+ L H +THTGEKP
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHTGEKP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K F+Q++ L H R HT
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTHT 36
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K F+Q++ L H+R HTGE+P
Sbjct: 10 EKPYGCNECGKTFSQKSILS-------------------AHQRTHTGEKP 40
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 18/31 (58%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+ Y+CK CGK F++ L+KH RLHSGE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 23/31 (74%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EK YNC C K+F++ LLKH R+H+GE+P
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+ + C+ C K+F++ P L KH + H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+ + C+ C K+F++ P L KH + H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+ + C+ C K+F++ P L KH + H+GEKP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+ Y+C+ C K+F + L +HER+H+G KP
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHSGEKP 40
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EK YNC C K+F++ LLKH R+H+
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHS 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 20/29 (68%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
EKPY C C KAF ++NL+ H R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/27 (55%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF ++NL+ H R HT
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
E+P+ C C K F + NL H +THTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
E+P+ C C K F + NL H +THTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 36.2 bits (82), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
E+P+ C C K F + NL H +THTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTG 458
E+PY C C K F +SNL H+R HTG
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTG 37
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
E+PY C C K F ++NL+ H R H+GE
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHTGE 38
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 19/48 (39%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGE 170
EKPY C C KAF ++NL H+R HTGE
Sbjct: 10 EKPYECNECQKAFNTKSNLM-------------------VHQRTHTGE 38
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
KP C MC KAFTQ ++L+ H+R HTGE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGER 432
+P C +CGK FTQ ++L+ H R H+GE+
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KP C MC KAFTQ ++L+ H+R HT
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHT 26
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+P +C +C K FTQ +L H++ HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+P +C +C K FTQ +L H++ HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+P +C +C K FTQ +L H++ HTGEK
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 16/29 (55%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
+P C C K F Q S+L H R HTG K
Sbjct: 1 KPCQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EQ3|A Chain A, Solution Structure Of The 17th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF+ R++L H +HTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F+ +++L H +H+G++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F +S+L H+ +HTG KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF+ R++L H +HT
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHT 36
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF+ R++L TH+ IHTG++P
Sbjct: 10 EKPYECNQCGKAFSVRSSLT-------------------THQAIHTGKKP 40
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C K F+ + +L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C K F+ + +L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C K F+ + +L H HTG+KP
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIHTGKKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 23/31 (74%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+GEKPY C C KAF ++++ + H R+HTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 22/30 (73%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SGE+PY C C K FI++S+ HER+HTG
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTG 35
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 23/31 (74%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+GE+PY C CGK F ++++ + H R+H+GE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGE 36
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 21/29 (72%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C KAF ++++ + H R+HT
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHT 34
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGE 170
+GEKPY C C KAF ++++ THERIHTGE
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFI-------------------THERIHTGE 36
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
+GE+P+ C C K F ++ + H + HTGE + G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
+GE+P+ C C K F ++ + H + HTGE + G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 21/37 (56%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
+GE+P+ C C K F ++ + H + HTGE + G
Sbjct: 6 SGEKPYVCTECGKAFIRKSHFITHERIHTGESGPSSG 42
>pdb|2DRP|A Chain A, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
pdb|2DRP|D Chain D, The Crystal Structure Of A Two Zinc-Finger Peptide Reveals
An Extension To The Rules For Zinc-FingerDNA RECOGNITION
Length = 66
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 169 GERPFRCEVCMKTFTQQPNLWKHMKT--HTGEKPYNCGMCDKAFTQRANLLKHIRV 222
GE +RC+VC + +T N +H T K Y C C K FT++ N+ H+++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 2/56 (3%)
Query: 346 GERPFRCEVCMKTFTQQPNLWKHMKT--HTGEKPYNCGMCDKAFTQRANLLKHIRV 399
GE +RC+VC + +T N +H T K Y C C K FT++ N+ H+++
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVH--TGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
GE Y C+ C++ + SN RH VK Y C C+K F + N+T H H
Sbjct: 6 EGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKIIHK 65
Query: 487 I 487
I
Sbjct: 66 I 66
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
Query: 94 GERPFRCEVCMKTFTQQPNLWKHMKT--HTGEKPYNCGMCDKAFTQRANLWG 143
GE +RC+VC + +T N +H T K Y C C K FT++ N+
Sbjct: 7 GEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTA 58
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 2/59 (3%)
Query: 371 THTGEKPYNCGMCDKAFTQRANLLKH-IRVHT-GERPYSCKLCGKRFTQQANLVKHNRL 427
T GE Y C +C + +T +N +H + H + Y C C K FT++ N+ H ++
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVYPCPFCFKEFTRKDNMTAHVKI 62
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 119 THTGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRCEVC 178
T GE Y C +C + +T +N +V +H+R + + C C
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYV--------------TSHKR---NVKVYPCPFC 46
Query: 179 MKTFTQQPNLWKHMK 193
K FT++ N+ H+K
Sbjct: 47 FKEFTRKDNMTAHVK 61
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 194 THTGEKPYNCGMCDKAFTQRANLLKH-IRVHTENLKLY 230
T GE Y C +C + +T +N +H + H N+K+Y
Sbjct: 4 TKEGEHTYRCKVCSRVYTHISNFCRHYVTSHKRNVKVY 41
>pdb|2YRH|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(699- 729) From Zinc Finger Protein 473
Length = 44
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+G++P C CGK F Q + L KH R+HSGE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/33 (51%), Positives = 23/33 (69%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
SG++P C C KTF Q S L +H+R+H+G KP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 22/33 (66%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+G+KP C C K F Q + L KH R+H+GE+P
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+G++P C C KTF Q L KH + H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+G++P C C KTF Q L KH + H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+G++P C C KTF Q L KH + H+GEKP
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHSGEKP 38
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+G+KP C C K F Q + L KH R+H+
Sbjct: 6 SGKKPLVCNECGKTFRQSSCLSKHQRIHS 34
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K+FI++S L H+R+HTG P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K+F +++ L H R+HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F +++ L H R+H+GE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ C C K+F ++ L H + HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ C C K+F ++ L H + HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ C C K+F ++ L H + HTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHTGENP 40
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K+F +++ L H R+HT
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIHT 36
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K+F +++ L H+RIHTGE P
Sbjct: 10 EKPYECSDCGKSFIKKSQLH-------------------VHQRIHTGENP 40
>pdb|2EQ1|A Chain A, Solution Structure Of The 9th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF +NL H +HTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F +NL H +H+GE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F SNL H+ +HTG KP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F NL H HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F NL H HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F NL H HTGEKP
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF +NL H +HT
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIHT 36
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF +NL TH+ IHTGE+P
Sbjct: 10 EKPYKCNECGKAFRAHSNLT-------------------THQVIHTGEKP 40
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 18/36 (50%)
Query: 460 KPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKG 495
KPY C C KAF NLT H++ G G + G
Sbjct: 11 KPYKCNECGKAFRAHSNLTTHQVIHTGEKPSGPSSG 46
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+KPY C C K FTQ ++L +H +HTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
++PY C CGK FTQ ++L +H +H+GE+P
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
++PY C C K F Q S+L RH +HTG KP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
++P++C C K FTQ +L +H HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
++P++C C K FTQ +L +H HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
++P++C C K FTQ +L +H HTGEKP
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
+KPY C C K FTQ ++L +H +HT
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIHT 36
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+KPY C C K FTQ + +L H IHTGE+P
Sbjct: 10 KKPYKCNECGKVFTQNS-------------------HLARHRGIHTGEKP 40
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 22/29 (75%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
EKPY+C +C KAF A+L +H+RVHT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHTE 225
EKPY+C +C KAF A+L +H+RVHT+
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
E+PYSC +CGK F A+L +H R+H+ E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHT 457
E+PY C C K F+ ++L++H RVHT
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHT 36
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
E+P+ C VC K F +L +H++ HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
E+P+ C VC K F +L +H++ HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
E+P+ C VC K F +L +H++ HT E
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQE 38
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 460 KPYSCKICWKAFAQTGNLTKH 480
KPYSC +C KAF + +L +H
Sbjct: 11 KPYSCNVCGKAFVLSAHLNQH 31
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 123 EKPYNCGMCDKAFTQRANL 141
EKPY+C +C KAF A+L
Sbjct: 10 EKPYSCNVCGKAFVLSAHL 28
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K+F+ + L H R+HTGE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C CGK F+ + L H R+H+GE+P
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K+F S L H+R+HTG KP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF C C K+F+ L H + HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF C C K+F+ L H + HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF C C K+F+ L H + HTGEKP
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHTGEKP 40
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP+ C C K+F+ L TH+RIHTGE+P
Sbjct: 10 EKPFECAECGKSFS-------------------ISSQLATHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C K+F+ + L H R+HT
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHT 36
>pdb|2EMX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
273- 303) Of Human Zinc Finger Protein 268
Length = 44
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+GEKP+ C C+KAF+ ++ LL H + H E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHTEN 226
+GEKP+ C C+KAF+ ++ LL H + H E
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEE 36
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+GE+PF C C K F+ + L H +TH EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+GE+PF C C K F+ + L H +TH EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+GE+PF C C K F+ + L H +TH EKP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 22/33 (66%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+GE+P+ C C K F+ ++ L+ H + H+ E+P
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
SGE+P+ C C K F +S L H++ H KP
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLLVHQQTHAEEKP 38
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 121 TGEKPYNCGMCDKAFTQRANLW 142
+GEKP+ C C+KAF+ ++ L
Sbjct: 6 SGEKPFGCSCCEKAFSSKSYLL 27
>pdb|2YSP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
507- 539) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K + + NL H +VHTGERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C+ CGK + + NL H ++H+GERP
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K + + NLD H++VHTG +P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++CE C K + + NL H K HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++CE C K + + NL H K HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++CE C K + + NL H K HTGE+P
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHTGERP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K + + NL H +VHT
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVHT 36
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K + + NL H+++HTGERP
Sbjct: 10 EKPYKCEKCGKGYNSK-------------------FNLDMHQKVHTGERP 40
>pdb|2YTP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
687- 719) Of Human Zinc Finger Protein 484
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
ER Y C CGK F +++ L+ H R+H+GE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E+ Y C C KAF +++ L+ H R+HTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
ER Y C C K F ++S L H+R+HTG KP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
ER + C C K F ++ L H + HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
ER + C C K F ++ L H + HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
ER + C C K F ++ L H + HTGEKP
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+ Y C C KAF +++ L+ H R+HT
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIHT 36
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
E+ Y C C KAF +++ L H+RIHTGE+P
Sbjct: 10 ERHYECSECGKAFARKSTLI-------------------MHQRIHTGEKP 40
>pdb|2EOL|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
581- 609) Of Human Zinc Finger Protein 268
Length = 42
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+GEKPY C C KAF ++ L+ H R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+GE+PY C CGK F ++ L+ H R H+GE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGE 36
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 19/29 (65%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C KAF ++ L+ H R HT
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHT 34
Score = 36.2 bits (82), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SGE+PY C C K F +S L H+R HTG
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTG 35
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
+GE+P+ C C K F + L H +THTGE + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
+GE+P+ C C K F + L H +THTGE + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 35.0 bits (79), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
+GE+P+ C C K F + L H +THTGE + G
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLIIHQRTHTGESGPSSG 42
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGE 170
+GEKPY C C KAF ++ L H+R HTGE
Sbjct: 6 SGEKPYECTDCGKAFGLKSQLI-------------------IHQRTHTGE 36
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 23/31 (74%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+ Y C +CGK F+Q ++L H R+H+GE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EK Y C +C K F+Q ++L H RVHTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+ ++C+VC K F+Q +L H + HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+ ++C+VC K F+Q +L H + HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+ ++C+VC K F+Q +L H + HTGEKP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+ Y C C K F Q S+L H+RVHTG KP
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHTGEKP 40
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EK Y C +C K F+Q ++L H RVHT
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EK Y C +C K F+Q ++L TH+R+HTGE+P
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQ-------------------THQRVHTGEKP 40
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F S L RH+R+HTG KP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K F + L +H R+HTGE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F + L +H R+H+GE+P
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F L +H + HTGEKP
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K F + L +H R+HT
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIHT 36
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K F R N + L H+RIHTGE+P
Sbjct: 10 EKPYKCNECGKVF--RHNSY-----------------LSRHQRIHTGEKP 40
>pdb|2EN4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
284- 316) Of Human Zinc Finger Protein 347
Length = 46
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/32 (56%), Positives = 21/32 (65%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
T EKPY C C KAF R+NL H +HTGE+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
T E+PY C CGK F ++NL H +H+GE+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 35.4 bits (80), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
T EKPY C C KAF R+NL H +HT
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHT 36
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
E+PY C C K F +SNL H+ +HTG K
Sbjct: 10 EKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
T E+P++C C K F + NL H HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
T E+P++C C K F + NL H HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 19/32 (59%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
T E+P++C C K F + NL H HTGEK
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLTTHQVIHTGEK 39
Score = 32.3 bits (72), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 23/51 (45%), Gaps = 19/51 (37%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGER 171
T EKPY C C KAF R+NL TH+ IHTGE+
Sbjct: 8 TKEKPYKCYECGKAFRTRSNLT-------------------THQVIHTGEK 39
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 19/36 (52%)
Query: 460 KPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKG 495
KPY C C KAF NLT H++ G + G + G
Sbjct: 11 KPYKCYECGKAFRTRSNLTTHQVIHTGEKRSGPSSG 46
>pdb|2EP0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
528- 560) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C +C K+F ++L H R+HTGE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C+VC K+F +L H + HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C+VC K+F +L H + HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C+VC K+F +L H + HTGEKP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C +C K F ++L H R+H+GE+P
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K+F S+L H+R+HTG KP
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C +C K+F +GS +L H+RIHTGE+P
Sbjct: 10 EKPYKCDVCHKSFR-----YGS--------------SLTVHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C K+F ++L H R+HT
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIHT 36
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 23/28 (82%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTG 458
++PY C+ C KTFIQ +L++H+RVHTG
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTG 37
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
+KPY C C K F Q +L +H RVHTGER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 35.8 bits (81), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
++PY CK C K F Q +L +H R+H+GER
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
++P+ C+ C KTF Q +L +H + HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
++P+ C+ C KTF Q +L +H + HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
++P+ C+ C KTF Q +L +H + HTGE+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGER 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
+KPY C C K F Q +L +H RVHT
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 460 KPYSCKICWKAFAQTGNLTKHE 481
KPY CK C K F Q G+L +H+
Sbjct: 11 KPYECKECRKTFIQIGHLNQHK 32
>pdb|1X5W|A Chain A, Solution Structure Of The C2h2 Type Zinc-Binding Domain Of
Human Zinc Finger Protein 64, Isoforms 1 And 2
Length = 70
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 160 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
L HERIH +RPF+C C Q NL KHMK G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/39 (48%), Positives = 22/39 (56%)
Query: 337 LGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
L HERIH +RPF+C C Q NL KHMK G+
Sbjct: 25 LRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 88 HERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
HERIH +RPF+C C Q NL KHMK G+
Sbjct: 28 HERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 418 QANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH 452
+A L H R+H +RP+ C YC+ Q SNL +H
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKH 56
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 390 RANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+A L H R+H +RP+ C C Q +NL KH + G+
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHGD 63
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 446 QSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHG 486
++ L HER+H +P+ C C Q NL+KH HG
Sbjct: 22 KAALRIHERIHCTDRPFKCNYCSFDTKQPSNLSKHMKKFHG 62
>pdb|2EMY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
551- 583) Of Human Zinc Finger Protein 268
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E PY C CGK F+++ L+ H R H+GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E PY C C KAF+++ L+ H R H GE+P
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E P+ C C K F+++ L H +TH GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E P+ C C K F+++ L H +TH GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E P+ C C K F+++ L H +TH GEKP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E PY C C K F ++ L H+R H G KP
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHAGEKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E PY C C KAF+++ L+ H R H
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTHA 36
>pdb|2EN0|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
385- 413) Of Human Zinc Finger Protein 268
Length = 42
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+G+KPY C C KAF ++ L+ H R+HTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+G++PY C CGK F ++ L+ H R+H+GE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGE 36
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SG++PY C C K F +S L HER+HTG
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTG 35
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+G+KPY C C KAF ++ L+ H R+HT
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHT 34
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 121 TGEKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGE 170
+G+KPY C C KAF ++ L HERIHTGE
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLI-------------------IHERIHTGE 36
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
+G++P+ C C K F + L H + HTGE + G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
+G++P+ C C K F + L H + HTGE + G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
+G++P+ C C K F + L H + HTGE + G
Sbjct: 6 SGQKPYVCNECGKAFGLKSQLIIHERIHTGESGPSSG 42
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+GE PY C CGK F ++ L+ H R H+GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+GE PY C C KAF ++ L+ H R H GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
+GE P+ C C K F ++ L H +TH GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
+GE P+ C C K F ++ L H +TH GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
+GE P+ C C K F ++ L H +TH GE
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAGE 36
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GE PY C C KAF ++ L+ H R H
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SGE PY C C K F ++ L H+R H G
Sbjct: 6 SGENPYECSECGKAFNRKDQLISHQRTHAG 35
>pdb|2EMI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
547- 579) Of Human Zinc Finger Protein 484
Length = 46
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
ER Y C C K FIQ+S L H+R+H G KP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
ER Y C CGK F Q++ L H R+H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E+ Y C C KAF Q++ L H R+H GE+P
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
ER + C C K F Q+ L H + H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
ER + C C K F Q+ L H + H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
ER + C C K F Q+ L H + H GEKP
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIHRGEKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVH 223
E+ Y C C KAF Q++ L H R+H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
E+ Y C C KAF Q++ L H+RIH GE+P
Sbjct: 10 ERHYECSECGKAFIQKS-------------------TLSMHQRIHRGEKP 40
>pdb|2EPZ|A Chain A, Solution Structure Of The 4th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP++C C KAF+ L +H R+HTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C CGK F+ L +H R+H+GE+P
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF C C K F+ L +H + HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF C C K F+ L +H + HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF C C K F+ L +H + HTGEKP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F L++H R+HTG KP
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHTGEKP 40
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP++C C KAF+ L +H R+HT
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIHT 36
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKP++C C KAF+ + L H RIHTGE+P
Sbjct: 10 EKPFDCIDCGKAFSDH-------------------IGLNQHRRIHTGEKP 40
>pdb|2EOM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
341- 373) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
ER + C CGK F Q +N ++H R+H+GE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
ER + C C K F+Q SN +H R+HTG KP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
E+ + C C K F Q +N ++H R+HTGE+P
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
ER RC C K F Q N +H + HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
ER RC C K F Q N +H + HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
ER RC C K F Q N +H + HTGEKP
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHTGEKP 40
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+ + C C K F Q +N ++H R+HT
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIHT 36
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F ++ +H RLH+G+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF ++ +H R+HTG+RP
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 35.4 bits (80), Expect = 0.080, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F S+ +H+R+HTG +P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F + +H + HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F + +H + HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 19/31 (61%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F + +H + HTG++P
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHTGQRP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF ++ +H R+HT
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLHT 36
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 411 CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVKPYSCK 465
CGK F + L H H+ + PY C + C K F S L RHE+VH G Y CK
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 353 EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTG---ERPYS 407
E C K F + L H +HT + PY C CDK F+ + L +H +VH G ++ S
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 408 CKLCGKRFT 416
C GK +T
Sbjct: 67 CSFVGKTWT 75
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 176 EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
E C K F + L H +HT + PY C CDK F+ + L +H +VH
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 28.9 bits (63), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 145 WVCHPTAVRDLFLVN--LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTG--- 197
+VCH F + L H+ HT + P+ C E C K F+ L +H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 198 EKPYNCGMCDKAFTQRANLLKHI 220
+K +C K +T LKH+
Sbjct: 62 KKDDSCSFVGKTWTL---YLKHV 81
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 411 CGKRFTQQANLVKHNRLHSGERPYHCRY--CTKTFIQQSNLDRHERVHTGVKPYSCK 465
CGK F + L H H+ + PY C + C K F S L RHE+VH G Y CK
Sbjct: 9 CGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAG---YPCK 62
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 353 EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHTG---ERPYS 407
E C K F + L H +HT + PY C CDK F+ + L +H +VH G ++ S
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKDDS 66
Query: 408 CKLCGKRFT 416
C GK +T
Sbjct: 67 CSFVGKTWT 75
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 176 EVCMKTFTQQPNLWKHMKTHTGEKPYNCGM--CDKAFTQRANLLKHIRVHT 224
E C K F + L H +HT + PY C CDK F+ + L +H +VH
Sbjct: 7 ENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHA 57
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 37/83 (44%), Gaps = 10/83 (12%)
Query: 145 WVCHPTAVRDLFLVN--LGTHERIHTGERPFRC--EVCMKTFTQQPNLWKHMKTHTG--- 197
+VCH F + L H+ HT + P+ C E C K F+ L +H K H G
Sbjct: 2 YVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRHEKVHAGYPC 61
Query: 198 EKPYNCGMCDKAFTQRANLLKHI 220
+K +C K +T LKH+
Sbjct: 62 KKDDSCSFVGKTWTL---YLKHV 81
>pdb|2EL4|A Chain A, Solution Structure Of The 15th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+PY C C KTF +S L H+R HTGVKP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
KPY C C K F+ ++ L+ H R HTG +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+PY C C K F+ ++ L+ H R H+G +P
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+P+ C C KTF+ + L H ++HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+P+ C C KTF+ + L H ++HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+P+ C C KTF+ + L H ++HTG KP
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHTGVKP 40
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C K F+ ++ L+ H R HT
Sbjct: 11 KPYGCSQCAKTFSLKSQLIVHQRSHT 36
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 459 VKPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKG 495
VKPY C C K F+ L H+ S G+ G + G
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSHTGVKPSGPSSG 46
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF + +L +H R+HTG RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F + +L +H R+H+G RP
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F + ++L+ H R+HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF + +L +H R+HT
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHT 36
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F + +L +H + HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F + +L +H + HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 32.0 bits (71), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F + +L +H + HTG +P
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYRP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 20/50 (40%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF + +L H RIHTG RP
Sbjct: 10 EKPYKCSECGKAFHRH-------------------THLNEHRRIHTGYRP 40
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
T E P+ C CGK F+ A+L KH +H+GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
T E PF+C C KTF+ +L KH H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
T E PF+C C KTF+ +L KH H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
T E PF+C C KTF+ +L KH H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
T E P+ C C K F+ A+L KH +H GE P
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E P+ C C KTF ++L +H+ +H G P
Sbjct: 10 EHPFKCNECGKTFSHSAHLSKHQLIHAGENP 40
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
T E P+ C C K F+ A+L KH +H
Sbjct: 8 TKEHPFKCNECGKTFSHSAHLSKHQLIHA 36
>pdb|2EOW|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
368- 400) Of Human Zinc Finger Protein 347
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C KAF R++L H H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F +++L H HSGE+P
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F + +L H TH+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F + +L H TH+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F + +L H TH+GEKP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F +S+L H+ H+G KP
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHSGEKP 40
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF R++L H H+
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATHS 36
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C KAF R+ +L H+ H+GE+P
Sbjct: 10 EKPYKCNECGKAFRARS-------------------SLAIHQATHSGEKP 40
>pdb|2YTO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
659- 691) Of Human Zinc Finger Protein 484
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/30 (56%), Positives = 21/30 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
EKPY C C KAFT+++ L H + HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C CGK FT+++ L H + H+GER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
E+P++C C K FT++ L H ++HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
E+P++C C K FT++ L H ++HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
E+P++C C K FT++ L H ++HTGE+
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 32.7 bits (73), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAFT+++ L H + HT
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHT 36
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
E+PY C C K F ++S L H++ HTG +
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSHTGER 39
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 19/49 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGER 171
EKPY C C KAFT+++ L H++ HTGER
Sbjct: 10 EKPYKCSDCGKAFTRKSGLH-------------------IHQQSHTGER 39
>pdb|1SRK|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of
Fog-1
Length = 35
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 24/32 (75%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHTENL 227
+G++P+ C +C AFT +AN +H++VHT+ L
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHTDTL 34
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 121
+G+RPF C +C+ FT + N +H+K HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 196
+G+RPF C +C+ FT + N +H+K HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 373
+G+RPF C +C+ FT + N +H+K HT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 401
+G++P+ C +C AFT +AN +H++VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 35.8 bits (81), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHT 457
SG+RP+ CR C F ++N RH +VHT
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 21/29 (72%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHS 429
+G+RP+ C++C FT +AN +H ++H+
Sbjct: 3 SGKRPFVCRICLSAFTTKANCARHLKVHT 31
>pdb|2EOP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
719- 751) Of Human Zinc Finger Protein 268
Length = 46
Score = 38.9 bits (89), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C+ CGK F+ + L+ H R+H+GE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K+F+ + L+ H R+HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ CR C K+F S L H+R+HTG P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P C C K+F+ L H + HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P C C K+F+ L H + HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P C C K+F+ L H + HTGE P
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHTGENP 40
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C K+F+ + L+ H R+HT
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIHT 36
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
T E+PY C CGK F + + L+ H R HSGE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
T EKPY C C KAF + + L+ H R H+GE
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGE 38
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTG 458
E+PY C C K FI+ S L H+R H+G
Sbjct: 10 EKPYECSECGKAFIRNSQLIVHQRTHSG 37
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
T EKPY C C KAF + + L+ H R H+
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHS 36
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
T E+P+ C C K F + L H +TH+GE + G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
T E+P+ C C K F + L H +TH+GE + G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
T E+P+ C C K F + L H +TH+GE + G
Sbjct: 8 TREKPYECSECGKAFIRNSQLIVHQRTHSGESGPSSG 44
>pdb|2EPU|A Chain A, Solution Structure Of The Secound C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 32
Length = 45
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
++P+ C CGK F + NLV H R+H+GE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
+KP+ C C K+F + NL+ H R+HTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
++P+ C +C K+F + NL H+R+HTG K
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
++PF C C K+F + NL H + HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
++PF C C K+F + NL H + HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
++PF C C K+F + NL H + HTGEK
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHTGEK 39
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
+KP+ C C K+F + NL+ H R+HT
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIHT 36
Score = 29.6 bits (65), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 19/49 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGER 171
+KP+ C C K+F + NL TH+RIHTGE+
Sbjct: 10 QKPFECTHCGKSFRAKGNLV-------------------THQRIHTGEK 39
>pdb|2EM4|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
724- 756) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+RPY C CGK F +++L+ H R H+GE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
++PY C C KAF +++L+ H R HTGE+P
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+RPY C C K F +S+L H R HTG KP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+RP+ C C K F + +L H ++HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+RP+ C C K F + +L H ++HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+RP+ C C K F + +L H ++HTGEKP
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHTGEKP 40
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
++PY C C KAF +++L+ H R HT
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSHT 36
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K F + S+L RH+ +HTG KP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C CGK F + ++L +H +H+GE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K F + ++L +H +HTGE+P
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++C C K F + +L +H HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++C C K F + +L +H HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++C C K F + +L +H HTGEKP
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHTGEKP 40
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K F + ++L +H +HT
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2EN2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
598- 626) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C+ CG RF Q A+L H +H+G P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
EKPY C C F Q A+L H+ +HTG P S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++CE C F Q +L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++CE C F Q +L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++CE C F Q +L H+ HTG P
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGP 39
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
E+PY C C F+Q ++L H +HTG P S
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHTGSGPSS 41
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C F Q A+L H+ +HT
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIHT 35
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
F+C C KTFTQ +L H + HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
F+C C KTFTQ +L H + HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
F+C C KTFTQ +L H + HTGEKP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+K + C C K FTQ ++L H R+HTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 19/28 (67%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+ C C KTF Q S+L H+R+HTG KP
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERP 433
+ C C K FTQ ++L H R+H+GE+P
Sbjct: 13 FKCNECKKTFTQSSSLTVHQRIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
+K + C C K FTQ ++L H R+HT
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIHT 36
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
+K + C C K FTQ ++L H+RIHTGE+P
Sbjct: 10 KKLFKCNECKKTFTQSSSLT-------------------VHQRIHTGEKP 40
>pdb|2EOQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
283- 315) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C +C K+F R+ L +H VHT E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+C++C K+F + L +H HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+C++C K+F + L +H HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 37.0 bits (84), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+C++C K+F + L +H HT EKP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K+F +S L+RH VHT KP
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C +CGK F ++ L +H+ +H+ E+P
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHTAEKP 40
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C +C K+F R+ L +H VHT
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVHT 36
>pdb|2ENC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
395- 427) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+CE C K F + H ++H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+CE C K F + H ++H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+CE C K F + H ++H+GEKP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 35.4 bits (80), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C+ CGK F + H R HSGE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K F + H R H+GE+P
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F S H+R H+G KP
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHSGEKP 40
>pdb|2EM7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
339- 371) Of Human Zinc Finger Protein 224
Length = 46
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 19/31 (61%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKPY C C K F R +L H VHTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P++CE C K F + +L+ H HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P++CE C K F + +L+ H HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P++CE C K F + +L+ H HTGEKP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C+ CGK F + +L H+ +H+GE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+PY C C K FI + +L H VHTG KP
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHTGEKP 40
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 15/27 (55%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K F R +L H VHT
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVHT 36
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 21/50 (42%), Gaps = 19/50 (38%)
Query: 123 EKPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
EKPY C C K F R +L+ TH +HTGE+P
Sbjct: 10 EKPYKCEECGKGFICRRDLY-------------------THHMVHTGEKP 40
>pdb|2ELY|A Chain A, Solution Structure Of The Third Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C K F++R+ L H ++HTGE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 24/31 (77%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ C CGK F++++ L H++LH+GE+P
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+C C K F+++ L H K HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+C C K F+++ L H K HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 36.2 bits (82), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 21/31 (67%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+C C K F+++ L H K HTGEKP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C C K F ++S L+ H ++HTG KP
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHTGEKP 40
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKP+ C C K F++R+ L H ++HT
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLHT 36
>pdb|2EMP|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
536- 568) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
KPY C C KAF+ ++L H +HTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+PY C CGK F+ ++L H +H+GE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+PY C C K F S+L H+ +HTG KP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+P+ C C K F+ +L H HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+P+ C C K F+ +L H HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+P+ C C K F+ +L H HTGEKP
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHTGEKP 40
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 19/49 (38%)
Query: 124 KPYNCGMCDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERP 172
KPY C C KAF+ ++L TH+ IHTGE+P
Sbjct: 11 KPYMCNECGKAFSVYSSLT-------------------THQVIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C KAF+ ++L H +HT
Sbjct: 11 KPYMCNECGKAFSVYSSLTTHQVIHT 36
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 459 VKPYSCKICWKAFAQTGNLTKHEL 482
VKPY C C KAF+ +LT H++
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQV 33
>pdb|2M0F|A Chain A, Solution Structure Of Miz-1 Zinc Finger 7
Length = 29
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 405 PYSCKLCGKRFTQQANLVKHNRLHSGER 432
P C+ CGK+FT NL +H R+HSGE+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 377 PYNCGMCDKAFTQRANLLKHIRVHTGER 404
P C C K FT NL +H+R+H+GE+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 97 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
P +C C K FT NL +H++ H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
P +C C K FT NL +H++ H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 349 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
P +C C K FT NL +H++ H+GEK
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 16/28 (57%)
Query: 433 PYHCRYCTKTFIQQSNLDRHERVHTGVK 460
P CR C K F NL RH R+H+G K
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHSGEK 29
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 200 PYNCGMCDKAFTQRANLLKHIRVHT 224
P C C K FT NL +H+R+H+
Sbjct: 2 PLKCRECGKQFTTSGNLKRHLRIHS 26
>pdb|2ELZ|A Chain A, Solution Structure Of The 17th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
EKPY C C K + +R NL H RVH GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 36.2 bits (82), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C+ CGK + ++ NL H R+H GE+
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
E+PY C C K + ++ NLD H+RVH G K
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
E+P++CE C K + ++ NL H + H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
E+P++CE C K + ++ NL H + H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
E+P++CE C K + ++ NL H + H GEK
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVHMGEK 39
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVH 223
EKPY C C K + +R NL H RVH
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
>pdb|2EPX|A Chain A, Solution Structure Of The Third C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 28 Homolog
Length = 47
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIR-VHTGERP 405
+KPY C C KAF Q +L++H R HTGE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNR-LHSGERP 433
++PY C CGK F Q +L++H R H+GE+P
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHER-VHTGVKP 461
++PY C C K FIQ ++L RH R HTG KP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVH 223
+KPY C C KAF Q +L++H R +
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYY 35
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMK-THTGEKP 125
++P+ C C K F Q +L +H + HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMK-THTGEKP 200
++P+ C C K F Q +L +H + HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
Score = 30.0 bits (66), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMK-THTGEKP 377
++P+ C C K F Q +L +H + HTGEKP
Sbjct: 10 KKPYECIECGKAFIQNTSLIRHWRYYHTGEKP 41
>pdb|2EOK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
441- 469) Of Human Zinc Finger Protein 268
Length = 42
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 16/30 (53%), Positives = 21/30 (70%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTG 402
+GEKPY C C KAFT ++ L+ H +HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 36.2 bits (82), Expect = 0.042, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSG 430
+GE+PY C CGK FT ++ L+ H +H+G
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 35.0 bits (79), Expect = 0.10, Method: Composition-based stats.
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGV 459
SGE+PY C C K F +S L H+ +HTGV
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTGV 36
Score = 34.7 bits (78), Expect = 0.13, Method: Composition-based stats.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY C C KAFT ++ L+ H +HT
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHT 34
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTG 122
+GE+P+ C C K FT + L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTG 197
+GE+P+ C C K FT + L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 30.0 bits (66), Expect = 3.4, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTG 374
+GE+P+ C C K FT + L H HTG
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQLIVHQGIHTG 35
Score = 28.5 bits (62), Expect = 9.6, Method: Composition-based stats.
Identities = 12/21 (57%), Positives = 15/21 (71%)
Query: 121 TGEKPYNCGMCDKAFTQRANL 141
+GEKPY C C KAFT ++ L
Sbjct: 6 SGEKPYVCSDCGKAFTFKSQL 26
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 37.0 bits (84), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EK Y C C K F++ + L +H ++HTGE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 36.2 bits (82), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+ Y C CGK F++ + L +H ++H+GE+P
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+ Y C C K F + S L +H+++HTG KP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+ ++C C K F++ L +H K HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+ ++C C K F++ L +H K HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 35.4 bits (80), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+ ++C C K F++ L +H K HTGEKP
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHTGEKP 40
Score = 29.3 bits (64), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EK Y C C K F++ + L +H ++HT
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
>pdb|2KVF|A Chain A, Structure Of The Three-Cys2his2 Domain Of Mouse Testis
Zinc Finger Protein
Length = 28
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 20/27 (74%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSG 430
RPYSC +CGKRF+ + + H R+H+G
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 32.0 bits (71), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTG 402
+PY+C +C K F+ + + H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTG 458
RPY C C K F + ++ H RVHTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
+PY+C +C K F+ + + H RVHT
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHT 27
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTG 122
RP+ C VC K F+ + + H + HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTG 197
RP+ C VC K F+ + + H + HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTG 374
RP+ C VC K F+ + + H + HTG
Sbjct: 2 RPYSCSVCGKRFSLKHQMETHYRVHTG 28
>pdb|2EPV|A Chain A, Solution Structure Of The 20th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 44
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 18/29 (62%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGV 459
E+PY C C K FI +S L HER H GV
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAGV 38
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSG 430
E+PY C CGK F ++ L+ H R H+G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTG 402
EKPY C C KAF ++ L+ H R H G
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHAG 37
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C KAF ++ L+ H R H
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTHA 36
>pdb|2EOV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
519- 551) Of Human Zinc Finger Protein 484
Length = 46
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
EKPY C C K+FT ++ L H + HTGER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C CGK FT ++ L H + H+GER
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
E+P++C C K+FT + L H K HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
E+P++C C K+FT + L H K HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
E+P++C C K+FT + L H K HTGE+
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
E+PY C C K+F +S L H++ HTG +
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHTGER 39
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K+FT ++ L H + HT
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCHT 36
>pdb|2EL6|A Chain A, Solution Structure Of The 21th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 46
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 20/29 (68%)
Query: 377 PYNCGMCDKAFTQRANLLKHIRVHTGERP 405
PY C C+K+F+ + LL H R+HT E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 32.3 bits (72), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 200 PYNCGMCDKAFTQRANLLKHIRVHT 224
PY C C+K+F+ + LL H R+HT
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHT 36
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 405 PYSCKLCGKRFTQQANLVKHNRLHSGERP 433
PY C C K F+ + L+ H R+H+ E+P
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 97 PFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
P++C C K+F+ + L H + HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
P++C C K+F+ + L H + HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 349 PFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
P++C C K+F+ + L H + HT EKP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 433 PYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
PY C C K+F + L H+R+HT KP
Sbjct: 12 PYKCSQCEKSFSGKLRLLVHQRMHTREKP 40
>pdb|2EM8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
423- 455) Of Human Zinc Finger Protein 224
Length = 46
Score = 36.6 bits (83), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 16/30 (53%), Positives = 20/30 (66%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
EKPY C C K + +R +L H RVHTGE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
E+PY C C K + ++ +LD H+RVHTG K
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+PY C CGK + ++ +L H R+H+GE+
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C C K + +R +L H RVHT
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHT 36
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
E+P++C C K + ++ +L H + HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
E+P++C C K + ++ +L H + HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
E+P++C C K + ++ +L H + HTGEK
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVHTGEK 39
>pdb|2EPY|A Chain A, Solution Structure Of The 10th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 42
Score = 36.6 bits (83), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 22/31 (70%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+GEK + C C KAF+ ++ L+ H R+HTGE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 22/31 (70%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+GE+ + C CGK F+ ++ L+ H R+H+GE
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGE 36
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEK + C C KAF+ ++ L+ H R+HT
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHT 34
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTG 458
SGE+ + C C K F +S L H+R+HTG
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTG 35
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
+GE+ C C K F+ + L H + HTGE + G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGPSSG 42
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
+GE+ C C K F+ + L H + HTGE + G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGPSSG 42
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 19/37 (51%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
+GE+ C C K F+ + L H + HTGE + G
Sbjct: 6 SGEKLHECNNCGKAFSFKSQLIIHQRIHTGESGPSSG 42
>pdb|2LV2|A Chain A, Solution Nmr Structure Of C2h2-Type Zinc-Fingers 4 And 5
From Human Insulinoma-Associated Protein 1 (Fragment
424-497), Northeast Structural Genomics Consortium
Target Hr7614b
Length = 85
Score = 36.2 bits (82), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 408 CKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH 452
C +CG+ F + +H RL + + C+YC TF L RH
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%)
Query: 436 CRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKH 480
C C ++F + +RH R+ + + CK C F + LT+H
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRH 75
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 380 CGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH-NRLHSGE 431
C +C ++F + +H+R+ + + CK C F L +H N+ H E
Sbjct: 31 CPVCGESFASKGAQERHLRLLHAAQVFPCKYCPATFYSSPGLTRHINKCHPSE 83
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIR-VHTGERPYSCKL 410
KPY C C K F++ +L HI+ VHT ERP+ C++
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV 46
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 404 RPYSCKLCGKRFTQQANLVKH-NRLHSGERPYHCR 437
+PY C+ CGK F++ +L H ++H+ ERP+ C+
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQ 45
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Query: 432 RPYHCRYCTKTFIQQSNLDRH-ERVHTGVKPYSCKICWKAFAQTG 475
+PY C+ C K F + +L+ H ++VHT +P+ C++ W + +G
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKCQV-WVSGPSSG 54
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMK-THTGEKPYNC 128
+P+ C+ C K F++ +L H+K HT E+P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMK-THTGEKPYNC 203
+P+ C+ C K F++ +L H+K HT E+P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMK-THTGEKPYNC 380
+P+ C+ C K F++ +L H+K HT E+P+ C
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIKQVHTSERPHKC 44
>pdb|2EOI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
329- 359) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
+GEK + C C K F+ + L+ H R+HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
SGE+ + C C KTF S L H+R+HTG P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+GE+ + C C K F+ + LV H R+H+GE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+GE+ C C KTF+ L H + HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+GE+ C C KTF+ L H + HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 32.0 bits (71), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+GE+ C C KTF+ L H + HTGE P
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHTGENP 38
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEK + C C K F+ + L+ H R+HT
Sbjct: 6 SGEKLHECSECRKTFSFHSQLVIHQRIHT 34
>pdb|2EN7|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
495- 525) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGE 403
KPY C C KAF ++ L+ H R HTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGE 431
+PY C CGK F ++ L+ H R H+GE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C KAF ++ L+ H R HT
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHT 36
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
+P+ C C K F + L H +THTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
+P+ C C K F + L H +THTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
+P+ C C K F + L H +THTGE
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTGE 38
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTG 458
+PY C C K F +S L H R HTG
Sbjct: 11 KPYVCNECGKAFRSKSYLIIHTRTHTG 37
>pdb|2EOS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
626- 654) Of Human B-Cell Lymphoma 6 Protein
Length = 42
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+PY C++CG RF L H R+H+G P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
EKPY C +C F L H+R+HTG P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+P+ CE+C F L H++ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+P+ CE+C F L H++ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+P+ CE+C F L H++ HTG P
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGP 39
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYS 463
E+PY C C F L H R+HTG P S
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHTGSGPSS 41
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
EKPY C +C F L H+R+HT
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIHT 35
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 35.8 bits (81), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 21/30 (70%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
K + C C KAFT+++ L H ++HTGE+P
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 20/28 (71%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERP 433
+ C CGK FT+++ L H ++H+GE+P
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
F C C K FT++ L H K HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
F C C K FT++ L H K HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 17/28 (60%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
F C C K FT++ L H K HTGEKP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 18/28 (64%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+ C C K F ++S L H+++HTG KP
Sbjct: 13 FECTECGKAFTRKSTLSMHQKIHTGEKP 40
>pdb|2EPR|A Chain A, Solution Structure Of The Secound Zinc Finger Domain Of
Zinc Finger Protein 278
Length = 48
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 100 CEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 129
CE+C K F +L +H +H+GEKPY+ G
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 175 CEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 204
CE+C K F +L +H +H+GEKPY+ G
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 352 CEVCMKTFTQQPNLWKHMKTHTGEKPYNCG 381
CE+C K F +L +H +H+GEKPY+ G
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYSSG 44
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 407 SCKLCGKRFTQQANLVKHNRLHSGERPY 434
+C++CGK F +L +H HSGE+PY
Sbjct: 14 ACEICGKIFRDVYHLNRHKLSHSGEKPY 41
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 436 CRYCTKTFIQQSNLDRHERVHTGVKPYS 463
C C K F +L+RH+ H+G KPYS
Sbjct: 15 CEICGKIFRDVYHLNRHKLSHSGEKPYS 42
>pdb|2EPQ|A Chain A, Solution Structure Of The Third Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 45
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHSG 430
+GE+PYSC +CG RF ++ + H R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHTG 402
+GEKPY+C +C F ++ + H+R H G
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSHDG 35
Score = 29.6 bits (65), Expect = 5.0, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVH 223
+GEKPY+C +C F ++ + H+R H
Sbjct: 6 SGEKPYSCPVCGLRFKRKDRMSYHVRSH 33
>pdb|2YU5|A Chain A, Solution Structure Of The Zf-C2h2 Domain (669-699aa) In
Zinc Finger Protein 473
Length = 44
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E P+ C CD+ FTQR L++H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHT 401
E P+ C CD+ FTQR L++H R H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHT 121
E PF+C C + FTQ+ L +H +TH
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHT 196
E PF+C C + FTQ+ L +H +TH
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHT 373
E PF+C C + FTQ+ L +H +TH
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHS 429
E P+ C C + FTQ+ LV+H R H+
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHT 457
E P+ C C + F Q++ L +HER H
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHA 36
>pdb|2EPC|A Chain A, Solution Structure Of Zinc Finger Domain 7 In Zinc Finger
Protein 32
Length = 42
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 19/33 (57%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERPYS 407
E PY CG C K+FTQR +L H R + P S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGPSS 41
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 14/24 (58%), Positives = 16/24 (66%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIR 221
E PY CG C K+FTQR +L H R
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQR 32
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E PY C CGK FTQ+ +L H R S P
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCSQSGP 39
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/19 (63%), Positives = 14/19 (73%)
Query: 123 EKPYNCGMCDKAFTQRANL 141
E PY CG C K+FTQR +L
Sbjct: 9 ETPYLCGQCGKSFTQRGSL 27
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 21/30 (70%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
ERP+ C CGK F ++++L H RLHS E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
E+P+ C C K F +R++L H+R+H+ E+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E+P+ C C K F +R++L H+R+H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
ERPF+C C K F ++ +L H++ H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
ERPF+C C K F ++ +L H++ H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 33.1 bits (74), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
ERPF+C C K F ++ +L H++ H+ EK
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREK 39
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHT 457
ERP+ C C K F ++S+L H R+H+
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
>pdb|2YTE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
484- 512) Of Human Zinc Finger Protein 473
Length = 42
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 196 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 224
+GEKPY+C C + F+ L++H ++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 373 TGEKPYNCGMCDKAFTQRANLLKHIRVHT 401
+GEKPY+C C + F+ L++H ++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHT 457
SGE+PY C C +TF + L +H+++HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 401 TGERPYSCKLCGKRFTQQANLVKHNRLHS 429
+GE+PYSC C + F+ LV+H ++H+
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 93 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 121
+GE+P+ C C +TF+ L +H K HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 168 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 196
+GE+P+ C C +TF+ L +H K HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 345 TGERPFRCEVCMKTFTQQPNLWKHMKTHT 373
+GE+P+ C C +TF+ L +H K HT
Sbjct: 6 SGEKPYSCAECKETFSDNNRLVQHQKMHT 34
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+PF+C+ C + F++ +L H +THTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+PF+C+ C + F++ +L H +THTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+PF+C+ C + F++ +L H +THTGEK
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.3 bits (72), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
KP+ C C + F++ +L H R HTGE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 32.0 bits (71), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGER 432
+P+ CK C ++F++ +L H R H+GE+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
+P+ C+ C + F + +L H R HTG K
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 383 CDKAFTQRANLLKHIRV-HTGERPYSCK--LCGKRFTQQANLVKHNRLHSGERPYHCRY 438
C + F+ R L H + H ++ +SC CGK F + +L +H +LHS R Y C +
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 73
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 355 CMKTFTQQPNLWKHMK-THTGEKPYNCG--MCDKAFTQRANLLKHIRVHTGERPYSCKLC 411
C + F+ + L H K H +K ++C C K+F + +L +H+++H+ R Y C+
Sbjct: 15 CGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEFS 74
Query: 412 G 412
G
Sbjct: 75 G 75
>pdb|1ARD|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 97 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
F CEVC + F +Q +L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
F CEVC + F +Q +L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 349 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
F CEVC + F +Q +L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEHLKRHYRSHTNEK 29
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
E PY C CGK F+++ LV H + HSG+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
E PY C C K F+++ L+ H + H+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 123
E P+ C C K F+++ L H KTH+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 198
E P+ C C K F+++ L H KTH+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGE 375
E P+ C C K F+++ L H KTH+G+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHSGQ 38
Score = 28.9 bits (63), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHT 224
E PY C C K F+++ L+ H + H+
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|2ELT|A Chain A, Solution Structure Of The 3rd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
KPY C C A +ANL H+R HTGE+
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+P++C C + NL H++ HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+P++C C + NL H++ HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+P++C C + NL H++ HTGEK
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHTGEK 36
Score = 29.3 bits (64), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C A +ANL H+R HT
Sbjct: 8 KPYKCPQCSYASAIKANLNVHLRKHT 33
>pdb|2LVR|A Chain A, Solution Structure Of Miz-1 Zinc Finger 8
Length = 30
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
KPY C C + F L +H+R+HTGE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVK 460
+PY C +C + F L RH R+HTG K
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGER 432
+PY C C ++F L +H R+H+GE+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVHT 224
KPY C C + F L +H+R+HT
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHT 27
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+P+ C C + F L +H++ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+P+ C C + F L +H++ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+P+ C C + F L +H++ HTGEK
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHTGEK 30
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
K + C C + FT +++L +H R+HTGE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 22/30 (73%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+ + C CG+ FT +++L +H R+H+GE+P
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 32.3 bits (72), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 21/30 (70%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
+ + C C + F +S+L++H+R+HTG KP
Sbjct: 11 KSHQCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 99 RCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+C C + FT + +L +H + HTGEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 174 RCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+C C + FT + +L +H + HTGEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 351 RCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+C C + FT + +L +H + HTGEKP
Sbjct: 14 QCHECGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|1ARF|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 97 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
F CEVC + F +Q L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
F CEVC + F +Q L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 349 PFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
F CEVC + F +Q L +H ++HT EK
Sbjct: 2 SFVCEVCTRAFARQEYLKRHYRSHTNEK 29
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 404 RPYSC--KLCGKRFTQQANLVKHNRLHSGER 432
RP+ C CGKRFT+ L +H R H+GE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 96 RPFRC--EVCMKTFTQQPNLWKHMKTHTGEK 124
RPF C C K FT+ L +H +THTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 171 RPFRC--EVCMKTFTQQPNLWKHMKTHTGEK 199
RPF C C K FT+ L +H +THTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 348 RPFRC--EVCMKTFTQQPNLWKHMKTHTGEK 376
RPF C C K FT+ L +H +THTGEK
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 432 RPYHC--RYCTKTFIQQSNLDRHERVHTGVK 460
RP+ C YC K F + L RH+R HTG K
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>pdb|2EM0|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 224
Length = 46
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EK + C CD F+Q ++L H VH GE+P
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHTGVKP 461
E+ + CR C F Q S+L H+ VH G KP
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVHVGEKP 40
>pdb|2LVU|A Chain A, Solution Structure Of Miz-1 Zinc Finger 10
Length = 26
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHS 429
+PY C+ CGKRF Q + L H R H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHHD 26
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 199 KPYNCGMCDKAFTQRANLLKHIRVH 223
KPY C C K F Q + L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
Score = 29.3 bits (64), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVH 400
KPY C C K F Q + L HIR H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 32.0 bits (71), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
ERPY C CGK F + ++L++H + H E+
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
ERP+ C C K F + +L +H+K H EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
ERP+ C C K F + +L +H+K H EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
ERP+ C C K F + +L +H+K H EK
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
E+PY C C K F + ++L++H++ H E+
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREK 39
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVH 223
E+PY C C K F + ++L++H++ H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRH 35
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 403 ERPYSCKL--CGKRFTQQANLVKHNRLHSGERP 433
E+P++C CG RF++ L +H R HSG +P
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 431 ERPYHCRY--CTKTFIQQSNLDRHERVHTGVKP 461
E+P+ C + C F + L RH R H+GVKP
Sbjct: 10 EKPFACTWPGCGWRFSRSDELSRHRRSHSGVKP 42
>pdb|1PAA|A Chain A, Structure Of A Histidine-X4-Histidine Zinc Finger Domain:
Insights Into Adr1-Uas1 Protein-Dna Recognition
Length = 30
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 22/28 (78%), Gaps = 1/28 (3%)
Query: 201 YNCGMCDKAFTQRANLLKHI-RVHTENL 227
Y CG+C++AFT+R L++H ++H+ NL
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSGNL 30
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 21/26 (80%), Gaps = 1/26 (3%)
Query: 378 YNCGMCDKAFTQRANLLKHI-RVHTG 402
Y CG+C++AFT+R L++H ++H+G
Sbjct: 3 YACGLCNRAFTRRDLLIRHAQKIHSG 28
>pdb|1ZNF|A Chain A, Three-Dimensional Solution Structure Of A Single Zinc
Finger Dna-Binding Domain
Length = 27
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 201 YNCGMCDKAFTQRANLLKHIRVH 223
Y CG+C+++F +++ L +H RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVH 400
Y CG+C+++F +++ L +H RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 17/23 (73%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVH 456
Y C C ++F+++S L RH+RVH
Sbjct: 2 YKCGLCERSFVEKSALSRHQRVH 24
>pdb|2CTU|A Chain A, Solution Structure Of Zinc Finger Domain From Human Zn
Finger Protein 483
Length = 73
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 30/73 (41%), Gaps = 7/73 (9%)
Query: 423 KHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHEL 482
K ++H G+R C C FI++S L R K C+ C K Q L K E
Sbjct: 8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG 60
Query: 483 SAHGIGKPGVNKG 495
+ G G + G
Sbjct: 61 NESGKKTSGPSSG 73
Score = 29.6 bits (65), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 7/66 (10%)
Query: 395 KHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHER 454
K ++H G+R C CG F +++ L + + C C K Q++ L++ E
Sbjct: 8 KRQKIHLGDRSQKCSKCGIIFIRRSTLSRR-------KTPMCEKCRKDSCQEAALNKDEG 60
Query: 455 VHTGVK 460
+G K
Sbjct: 61 NESGKK 66
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
KPY C C K+F+ L +H HT E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
+P++C C K+F+ L +H THT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
+P++C C K+F+ L +H THT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
+P++C C K+F+ L +H THT EKP
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
+PY C CGK F+ L +H H+ E+P
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREKP 40
>pdb|1ARE|A Chain A, Structures Of Dna-Binding Mutant Zinc Finger Domains:
Implications For Dna Binding
Length = 29
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTHTGEK 124
F CEVC + F +Q L +H ++HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTHTGEK 199
F CEVC + F +Q L +H ++HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTHTGEK 376
F CEVC + F +Q L +H ++HT EK
Sbjct: 3 FVCEVCTRAFARQEALKRHYRSHTNEK 29
>pdb|2EJ4|A Chain A, Functional And Structural Basis Of Nuclear Localization
Signal In Zic3 Zinc Finger Domain: A Role Of Conserved
Tryptophan Residue In The Zinc Finger Domain
Length = 95
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 355 CMKTFTQQPNLWKHMKT-HTGEKPYNCGMC--------DKAFTQRANLLKHIRVHTGER 404
C +TF+ L H+ H G N +C K+F + L+ HIRVHTGE+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 9/59 (15%)
Query: 383 CDKAFTQRANLLKHIRV-HTGERPYSCKLC--------GKRFTQQANLVKHNRLHSGER 432
CD+ F+ L+ H+ + H G + +C GK F + LV H R+H+GE+
Sbjct: 31 CDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEK 89
>pdb|2YSO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
656- 688) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+ + C+ CG+ F Q +L++H LH G++
Sbjct: 10 EKSHQCRECGEIFFQYVSLIEHQVLHMGQK 39
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGERP 433
E+P+ CK CG F+ +L KH R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGERP 405
EKP+ C C F+ +L KH+R H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 95 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 125
E+PF+C+ C F+ +L+KH+++H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 170 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 200
E+PF+C+ C F+ +L+KH+++H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 347 ERPFRCEVCMKTFTQQPNLWKHMKTHTGEKP 377
E+PF+C+ C F+ +L+KH+++H P
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTDP 40
>pdb|3ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
pdb|4ZNF|A Chain A, High-Resolution Three-Dimensional Structure Of A Single
Zinc Finger From A Human Enhancer Binding Protein In
Solution
Length = 30
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 432 RPYHCRYCTKTFIQQSNLDRHER 454
RPYHC YC +F + NL +H +
Sbjct: 1 RPYHCSYCNFSFKTKGNLTKHMK 23
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 201 YNCGMCDKAFTQRANLLKHIRVHT 224
YNC C KAFT+ +L +H ++HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
Score = 29.6 bits (65), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVHT 401
YNC C KAFT+ +L +H ++HT
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHT 36
>pdb|2EPW|A Chain A, Solution Structure Of The 24th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 268
Length = 46
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHTEN 226
EKP C C KAF ++ L+ H R H ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDD 38
Score = 29.3 bits (64), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 375 EKPYNCGMCDKAFTQRANLLKHIRVHTGER 404
EKP C C KAF ++ L+ H R H ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 403 ERPYSCKLCGKRFTQQANLVKHNRLHSGER 432
E+P C CGK F ++ L+ H R H ++
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTHVDDK 39
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 29.6 bits (65), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
K + C C+K F + +L H+R+HT E+
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+ F CE C K F + +L H++ HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+ F CE C K F + +L H++ HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+ F CE C K F + +L H++ HT EK
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|1YXE|A Chain A, Structure And Inter-Domain Interactions Of Domain Ii From
The Blood Stage Malarial Protein, Apical Membrane
Antigen 1
Length = 140
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 16/57 (28%), Positives = 24/57 (42%)
Query: 446 QSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNTHNCE 502
+ +L +E++ G K + + AF TG +HG G N T T CE
Sbjct: 58 EQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCE 114
>pdb|1WJP|A Chain A, Solution Structure Of Zf-C2h2 Domains From Human Zinc
Finger Protein 295
Length = 107
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 3/93 (3%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCK 465
Y C+LC + + H RL C YC+ F HE K +C
Sbjct: 17 YQCRLCNAKLSSLLEQGSHERL--CRNAAVCPYCSLRFFSPELKQEHES-KCEYKKLTCL 73
Query: 466 ICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNT 498
C + F + ++ +H++ H G ++
Sbjct: 74 ECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPSS 106
>pdb|2Z8V|A Chain A, Structure Of An Ignar-Ama1 Complex
pdb|2Z8V|B Chain B, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|A Chain A, Structure Of An Ignar-Ama1 Complex
pdb|2Z8W|B Chain B, Structure Of An Ignar-Ama1 Complex
Length = 335
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 446 QSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNTHNCEEKC 505
+ +L +E++ G K + + AF TG +HG G N T T CE
Sbjct: 251 EQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFN 310
Query: 506 SIPVLLCSKTGKI 518
P L + + I
Sbjct: 311 VKPTCLINNSSYI 323
>pdb|1Z40|A Chain A, Ama1 From Plasmodium Falciparum
pdb|1Z40|E Chain E, Ama1 From Plasmodium Falciparum
pdb|2Q8A|A Chain A, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
pdb|2Q8B|A Chain A, Structure Of The Malaria Antigen Ama1 In Complex With A
Growth- Inhibitory Antibody
Length = 336
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 446 QSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNTHNCEEKC 505
+ +L +E++ G K + + AF TG +HG G N T T CE
Sbjct: 252 EQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFN 311
Query: 506 SIPVLLCSKTGKI 518
P L + + I
Sbjct: 312 VKPTCLINNSSYI 324
>pdb|2EOY|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
557- 589) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 198 EKPYNCGMCDKAFTQRANLLKHIRVHTENLK 228
EK + C C+K F+ L +H R+HT +K
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 431 ERPYHCRYCTKTFIQQSNLDRHERVHT-GVK 460
E+ + C C KTF L +HER+HT GVK
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTRGVK 40
>pdb|3ZWZ|A Chain A, Crystal Structure Of Plasmodium Falciparum Ama1 In Complex
With A 39aa Pfron2 Peptide
Length = 347
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 29/73 (39%)
Query: 446 QSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIGKPGVNKGTNTHNCEEKC 505
+ +L +E++ G K + + AF TG +HG G N T T CE
Sbjct: 256 EQHLTDYEKIKEGFKNKNASMIKSAFLPTGAFKADRYKSHGKGYNWGNYNTETQKCEIFN 315
Query: 506 SIPVLLCSKTGKI 518
P L + + I
Sbjct: 316 VKPTCLINNSSYI 328
>pdb|2ELQ|A Chain A, Solution Structure Of The 14th C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 124
+PF+C +C + NL HM H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 199
+PF+C +C + NL HM H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.5 bits (62), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 348 RPFRCEVCMKTFTQQPNLWKHMKTHTGEK 376
+PF+C +C + NL HM H+ EK
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIRVHTGER 404
KP+ C +C+ A ++NL H+ H+ E+
Sbjct: 8 KPFKCSLCEYATRSKSNLKAHMNRHSTEK 36
>pdb|2D9H|A Chain A, Solution Structure Of The Forth And Fifth Zf-C2h2 Domains
Of Zinc Finger Protein 692
Length = 78
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 429 SGERPYHCRYCTKTFIQQSNLDRHERVHT---GVKPYSCKICWKAFAQTGNLTKHELSAH 485
SG C C T Q+++L+ H+R H + C+ C K F + ++ H +H
Sbjct: 3 SGSSGLQCEICGFTCRQKASLNWHQRKHAETVAALRFPCEFCGKRFEKPDSVAAHRSKSH 62
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.135 0.462
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,734,511
Number of Sequences: 62578
Number of extensions: 675889
Number of successful extensions: 3676
Number of sequences better than 100.0: 200
Number of HSP's better than 100.0 without gapping: 190
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 1388
Number of HSP's gapped (non-prelim): 1926
length of query: 543
length of database: 14,973,337
effective HSP length: 104
effective length of query: 439
effective length of database: 8,465,225
effective search space: 3716233775
effective search space used: 3716233775
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)