RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2726
(543 letters)
>gnl|CDD|227381 COG5048, COG5048, FOG: Zn-finger [General function prediction
only].
Length = 467
Score = 62.0 bits (150), Expect = 3e-10
Identities = 61/327 (18%), Positives = 102/327 (31%), Gaps = 31/327 (9%)
Query: 171 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCG--MCDKAFTQRANLLKHIRVHTENLK 228
RP C C +F++ +L +H+++HTGEKP C CDK+F++ L +H+R H N
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQCSYSGCDKSFSRPLELSRHLRTHHNN-P 90
Query: 229 LYTRRKEEVEVEVDVCAGIYPLHQEGGVGLMGLPSHCCPGPIRKRKKKPRRDGTFVCKVC 288
K + L SH P R + + +
Sbjct: 91 SDLNSKSLPLSNSKASSSSLSSSSSNSNDNNLLSSHSLPPSSRDPQLPDLLSISNLRNNP 150
Query: 289 NKTFTQSSWGHKGLTKSRDI--QNLTGKISWAHSERNISGW-------------LEELPL 333
SS N K ++ IS L
Sbjct: 151 LPGNNSSSVNTPQSNSLHPPLPANSLSKDPSSNLSLLISSNVSTSIPSSSENSPLSSSYS 210
Query: 334 LVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKT------HTGEKPYNCGMCDKAF 387
+ + + + + + + + + + +
Sbjct: 211 IPSSSSDQNLENSSSSLPLTTNSQLSPKSLLSQSPSSLSSSDSSSSASESPRSSLPTASS 270
Query: 388 TQRANLLKHIRVHTGER-PYSCKLCGKRFTQQANLVKHNR--LHSGE--RPYHCRY--CT 440
+ G P K C F++ + L +H R HSGE +P+ C Y C
Sbjct: 271 QSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCG 330
Query: 441 KTFIQQSNLDRHERVHTGVKPYSCKIC 467
K F + L RH +HT + P K+
Sbjct: 331 KLFSRNDALKRHILLHTSISPAKEKLL 357
Score = 50.8 bits (121), Expect = 1e-06
Identities = 46/181 (25%), Positives = 69/181 (38%), Gaps = 17/181 (9%)
Query: 283 FVCKVCNKTFTQSSWGHKGLTKSRDIQNLTGKISWAHSERNISGWLEELPLLVNLGTHER 342
K CN +F++SS LT+ N +G+ S S + L H
Sbjct: 290 IKSKQCNISFSRSSP----LTRHLRSVNHSGESLKPFS-CPYSLCGKLFSRNDALKRHIL 344
Query: 343 IHTGERPFRC--EVCMKTFTQQPNLWKH-----MKTHTGEKPYNC--GMCDKAFTQRANL 393
+HT P + F+ N K +K C + F + +NL
Sbjct: 345 LHTSISPAKEKLLNSSSKFSPLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNL 404
Query: 394 LKHIRVHTGERPYSCK--LCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDR 451
HI H RPY+CK C K F + NL+ H ++H+ P C K+F + +L
Sbjct: 405 SLHIITHLSFRPYNCKNPPCSKSFNRHYNLIPHKKIHTNHAPLLCS-ILKSFRRDLDLSN 463
Query: 452 H 452
H
Sbjct: 464 H 464
Score = 38.5 bits (89), Expect = 0.008
Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 8/89 (8%)
Query: 376 KPYNCGMCDKAFTQRANLLKHIR--VHTGE--RPYSC--KLCGKRFTQQANLVKHNRLHS 429
P C+ +F++ + L +H+R H+GE +P+SC LCGK F++ L +H LH+
Sbjct: 288 LPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFSCPYSLCGKLFSRNDALKRHILLHT 347
Query: 430 GERPYHCRY--CTKTFIQQSNLDRHERVH 456
P + + F N + + +
Sbjct: 348 SISPAKEKLLNSSSKFSPLLNNEPPQSLQ 376
Score = 33.1 bits (75), Expect = 0.41
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 96 RPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNC 128
RP C C +F++ +L +H+++HTGEKP C
Sbjct: 32 RPDSCPNCTDSFSRLEHLTRHIRSHTGEKPSQC 64
Score = 32.7 bits (74), Expect = 0.51
Identities = 34/167 (20%), Positives = 59/167 (35%), Gaps = 39/167 (23%)
Query: 77 NLPLERSRRSTHERIHTGER-----PFRCEVCMKTFTQQPNLWKHMKT--HTGE--KPYN 127
+LP S+ S+ + P + + C +F++ L +H+++ H+GE KP++
Sbjct: 264 SLPTASSQSSSPNESDSSSEKGFSLPIKSKQCNISFSRSSPLTRHLRSVNHSGESLKPFS 323
Query: 128 CGM--CDKAFTQRANLWGSWVCHPTAVRDLFLVNLGTHERIHTGERPFRC--EVCMKTFT 183
C C K F++ L H +HT P + F+
Sbjct: 324 CPYSLCGKLFSRND-------------------ALKRHILLHTSISPAKEKLLNSSSKFS 364
Query: 184 QQPNLWKH-----MKTHTGEKPYNC--GMCDKAFTQRANLLKHIRVH 223
N K +K C + F + +NL HI H
Sbjct: 365 PLLNNEPPQSLQQYKDLKNDKKSETLSNSCIRNFKRDSNLSLHIITH 411
>gnl|CDD|227516 COG5189, SFP1, Putative transcriptional repressor regulating G2/M
transition [Transcription / Cell division and chromosome
partitioning].
Length = 423
Score = 46.2 bits (109), Expect = 3e-05
Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 12/86 (13%)
Query: 346 GERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHIRVHTGE 403
+P++C V C K + Q L HM G ++ + + K +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH---------GHQNQKLHENPSPEKMNIFSAKD 396
Query: 404 RPYSCKLCGKRFTQQANLVKHNRLHS 429
+PY C++C KR+ + N +K++R HS
Sbjct: 397 KPYRCEVCDKRY-KNLNGLKYHRKHS 421
Score = 37.4 bits (86), Expect = 0.015
Identities = 19/86 (22%), Positives = 35/86 (40%), Gaps = 11/86 (12%)
Query: 402 GERPYSCKL--CGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRHERVHTGV 459
+PY C + C K++ Q L K++ LH + + + + ++
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGL-KYHMLHG--------HQNQKLHENPSPEKMNIFSAKD 396
Query: 460 KPYSCKICWKAFAQTGNLTKHELSAH 485
KPY C++C K + L H +H
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYHRKHSH 422
Score = 37.0 bits (85), Expect = 0.021
Identities = 21/77 (27%), Positives = 31/77 (40%), Gaps = 22/77 (28%)
Query: 169 GERPFRCEV--CMKTFTQQPNLWKHMK---------------THTG----EKPYNCGMCD 207
+P++C V C K + Q L HM +KPY C +CD
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLHGHQNQKLHENPSPEKMNIFSAKDKPYRCEVCD 405
Query: 208 KAFTQRANLLKHIRVHT 224
K + + N LK+ R H+
Sbjct: 406 KRY-KNLNGLKYHRKHS 421
Score = 36.2 bits (83), Expect = 0.043
Identities = 19/81 (23%), Positives = 34/81 (41%), Gaps = 11/81 (13%)
Query: 374 GEKPYNCGM--CDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKHNRLHSGE 431
KPY C + C+K + + N LK+ +H ++ + + K N + +
Sbjct: 346 DGKPYKCPVEGCNKKYKNQ-NGLKYHMLHGH--------QNQKLHENPSPEKMNIFSAKD 396
Query: 432 RPYHCRYCTKTFIQQSNLDRH 452
+PY C C K + + L H
Sbjct: 397 KPYRCEVCDKRYKNLNGLKYH 417
Score = 33.9 bits (77), Expect = 0.24
Identities = 21/105 (20%), Positives = 31/105 (29%), Gaps = 30/105 (28%)
Query: 94 GERPFRCEV--CMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLWGSWVCHPTA 151
+P++C V C K + Q L HM G + H
Sbjct: 346 DGKPYKCPVEGCNKKYKNQNGLKYHMLH---------GHQ------------NQKLHENP 384
Query: 152 VRDLFLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHT 196
+ ++P+RCEVC K + L H K
Sbjct: 385 SPE-------KMNIFSAKDKPYRCEVCDKRYKNLNGLKYHRKHSH 422
>gnl|CDD|222150 pfam13465, zf-H2C2_2, Zinc-finger double domain.
Length = 26
Score = 40.5 bits (95), Expect = 3e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 112 NLWKHMKTHTGEKPYNCGMCDKAFTQ 137
NL +HM+THTGEKPY C +C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 40.5 bits (95), Expect = 3e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 187 NLWKHMKTHTGEKPYNCGMCDKAFTQ 212
NL +HM+THTGEKPY C +C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 40.5 bits (95), Expect = 3e-05
Identities = 16/26 (61%), Positives = 21/26 (80%)
Query: 364 NLWKHMKTHTGEKPYNCGMCDKAFTQ 389
NL +HM+THTGEKPY C +C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 38.9 bits (91), Expect = 1e-04
Identities = 15/26 (57%), Positives = 20/26 (76%)
Query: 392 NLLKHIRVHTGERPYSCKLCGKRFTQ 417
NL +H+R HTGE+PY C +CGK F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 159 NLGTHERIHTGERPFRCEVCMKTFTQ 184
NL H R HTGE+P++C VC K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 35.8 bits (83), Expect = 0.002
Identities = 14/26 (53%), Positives = 19/26 (73%)
Query: 336 NLGTHERIHTGERPFRCEVCMKTFTQ 361
NL H R HTGE+P++C VC K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 34.7 bits (80), Expect = 0.003
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 88 HERIHTGERPFRCEVCMKTFTQ 109
H R HTGE+P++C VC K+F+
Sbjct: 5 HMRTHTGEKPYKCPVCGKSFSS 26
Score = 34.3 bits (79), Expect = 0.005
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 420 NLVKHNRLHSGERPYHCRYCTKTFIQ 445
NL +H R H+GE+PY C C K+F
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
Score = 33.5 bits (77), Expect = 0.010
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 448 NLDRHERVHTGVKPYSCKICWKAFAQ 473
NL RH R HTG KPY C +C K+F+
Sbjct: 1 NLRRHMRTHTGEKPYKCPVCGKSFSS 26
>gnl|CDD|177301 PHA00733, PHA00733, hypothetical protein.
Length = 128
Score = 35.6 bits (82), Expect = 0.014
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 377 PYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCGKRFTQQANLVKH 424
PY C +C F+ +L +HIR E C +CGK F + + H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDH 118
Score = 31.0 bits (70), Expect = 0.62
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 405 PYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYCTKTFIQQSNLDRH 452
PY C LC F+ +L +H R E C C K F + H
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRY--TEHSKVCPVCGKEFRNTDSTLDH 118
Score = 30.6 bits (69), Expect = 0.90
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 328 LEELPLLVNLGTHERIHTGERPFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAF 387
L+E L L T + + P+ C +C+ F+ +L +H++ K C +C K F
Sbjct: 56 LDESSYLYKLLTSKAVS----PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEF 109
Query: 388 TQRANLLKHI 397
+ L H+
Sbjct: 110 RNTDSTLDHV 119
Score = 30.2 bits (68), Expect = 1.1
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Query: 172 PFRCEVCMKTFTQQPNLWKHMKTHTGEKPYNCGMCDKAFTQRANLLKHI 220
P+ C +C+ F+ +L +H++ K C +C K F + L H+
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHV 119
Score = 28.7 bits (64), Expect = 3.9
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 2/55 (3%)
Query: 433 PYHCRYCTKTFIQQSNLDRHERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGI 487
PY C C F +L +H R K C +C K F T + H H I
Sbjct: 73 PYVCPLCLMPFSSSVSLKQHIRYTEHSK--VCPVCGKEFRNTDSTLDHVCKKHNI 125
>gnl|CDD|197676 smart00355, ZnF_C2H2, zinc finger.
Length = 23
Score = 30.5 bits (69), Expect = 0.13
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTH 120
+RC C K F + L +HM+TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.13
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTH 195
+RC C K F + L +HM+TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 30.5 bits (69), Expect = 0.13
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTH 372
+RC C K F + L +HM+TH
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.44
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 201 YNCGMCDKAFTQRANLLKHIRVH 223
Y C C K F ++ L +H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.44
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 378 YNCGMCDKAFTQRANLLKHIRVH 400
Y C C K F ++ L +H+R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 29.0 bits (65), Expect = 0.44
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVH 456
Y C C K F +S L H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
Score = 28.6 bits (64), Expect = 0.51
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLH 428
Y C CGK F ++ L +H R H
Sbjct: 1 YRCPECGKVFKSKSALREHMRTH 23
>gnl|CDD|165133 PHA02768, PHA02768, hypothetical protein; Provisional.
Length = 55
Score = 31.2 bits (70), Expect = 0.13
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 201 YNCGMCDKAFTQRANLLKHIRVHTENLKLYTRRK 234
Y C +C + + +R +++ H+R H NLKL ++
Sbjct: 6 YECPICGEIYIKRKSMITHLRKHNTNLKLSNCKR 39
>gnl|CDD|200998 pfam00096, zf-C2H2, Zinc finger, C2H2 type. The C2H2 zinc finger
is the classical zinc finger domain. The two conserved
cysteines and histidines co-ordinate a zinc ion. The
following pattern describes the zinc finger.
#-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can
be any amino acid, and numbers in brackets indicate the
number of residues. The positions marked # are those
that are important for the stable fold of the zinc
finger. The final position can be either his or cys. The
C2H2 zinc finger is composed of two short beta strands
followed by an alpha helix. The amino terminal part of
the helix binds the major groove in DNA binding zinc
fingers. The accepted consensus binding sequence for Sp1
is usually defined by the asymmetric hexanucleotide core
GGGCGG but this sequence does not include, among others,
the GAG (=CTC) repeat that constitutes a high-affinity
site for Sp1 binding to the wt1 promoter.
Length = 22
Score = 29.6 bits (67), Expect = 0.23
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 203 CGMCDKAFTQRANLLKHIRVH 223
C C K+F++++NL +H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 29.6 bits (67), Expect = 0.23
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 380 CGMCDKAFTQRANLLKHIRVH 400
C C K+F++++NL +H+R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 29.2 bits (66), Expect = 0.33
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 407 SCKLCGKRFTQQANLVKHNRLH 428
C CGK F++++NL +H R H
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 28.9 bits (65), Expect = 0.36
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 436 CRYCTKTFIQQSNLDRHERVH 456
C C K+F ++SNL RH R H
Sbjct: 2 CPDCGKSFSRKSNLKRHLRTH 22
Score = 26.5 bits (59), Expect = 2.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 99 RCEVCMKTFTQQPNLWKHMKTH 120
+C C K+F+++ NL +H++TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.5 bits (59), Expect = 2.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 174 RCEVCMKTFTQQPNLWKHMKTH 195
+C C K+F+++ NL +H++TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
Score = 26.5 bits (59), Expect = 2.5
Identities = 9/22 (40%), Positives = 17/22 (77%)
Query: 351 RCEVCMKTFTQQPNLWKHMKTH 372
+C C K+F+++ NL +H++TH
Sbjct: 1 KCPDCGKSFSRKSNLKRHLRTH 22
>gnl|CDD|179886 PRK04860, PRK04860, hypothetical protein; Provisional.
Length = 160
Score = 31.8 bits (73), Expect = 0.45
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Query: 405 PYSCKLCGKRFTQQANLVKHNRLHSGERPYHCRYC 439
PY CK C Q + +HNR+ GE Y CR C
Sbjct: 119 PYRCK-CQ---EHQLTVRRHNRVVRGEAVYRCRRC 149
Score = 29.9 bits (68), Expect = 2.1
Identities = 14/36 (38%), Positives = 17/36 (47%), Gaps = 4/36 (11%)
Query: 377 PYNCGMCDKAFTQRANLLKHIRVHTGERPYSCKLCG 412
PY C + T R +H RV GE Y C+ CG
Sbjct: 119 PYRCKCQEHQLTVR----RHNRVVRGEAVYRCRRCG 150
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 31.6 bits (72), Expect = 1.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 104 MKTFTQQPNLWKH----MKTHTGEKPYNCGMCDK 133
M T PNL M+T+ P CG+CDK
Sbjct: 68 MNILTNTPNLMDERNAIMQTYDVNHPLECGVCDK 101
Score = 31.6 bits (72), Expect = 1.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 179 MKTFTQQPNLWKH----MKTHTGEKPYNCGMCDK 208
M T PNL M+T+ P CG+CDK
Sbjct: 68 MNILTNTPNLMDERNAIMQTYDVNHPLECGVCDK 101
Score = 31.6 bits (72), Expect = 1.5
Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 4/34 (11%)
Query: 356 MKTFTQQPNLWKH----MKTHTGEKPYNCGMCDK 385
M T PNL M+T+ P CG+CDK
Sbjct: 68 MNILTNTPNLMDERNAIMQTYDVNHPLECGVCDK 101
>gnl|CDD|212564 cd11674, lambda-1, inner capsid protein lambda-1 or VP3. The
reovirus inner capsid protein lambda-1 displays
nucleoside triphosphate phosphohydrolase (NTPase),
RNA-5'-triphosphatase (RTPase), and RNA helicase
activity and may play a role in the transcription of the
virus genome, the unwinding or reannealing of
double-stranded RNA during RNA synthesis. The RTPase
activity constitutes the first step in the capping of
RNA, resulting in a 5'-diphosphorylated RNA plus-strand.
lambda1 is an Orthoreovirus core protein, VP3 is the
homologous core protein in Aquareoviruses.
Length = 1166
Score = 31.3 bits (71), Expect = 1.7
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 452 HERVHTGVKPYSCKICWKAFAQTGNLTKHELSAHGIG 488
+ Y C +C F+ L +H+ + H IG
Sbjct: 64 KKATPINPSSYVCNVCMAEFSSMDQLAEHQRTTHSIG 100
>gnl|CDD|206065 pfam13894, zf-C2H2_4, C2H2-type zinc finger. This family contains
a number of divergent C2H2 type zinc fingers.
Length = 24
Score = 25.7 bits (56), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 98 FRCEVCMKTFTQQPNLWKHMKTH 120
F+C +C K+F+ + L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 173 FRCEVCMKTFTQQPNLWKHMKTH 195
F+C +C K+F+ + L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.7 bits (56), Expect = 5.2
Identities = 8/23 (34%), Positives = 16/23 (69%)
Query: 350 FRCEVCMKTFTQQPNLWKHMKTH 372
F+C +C K+F+ + L +H++ H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
Score = 25.3 bits (55), Expect = 8.7
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 434 YHCRYCTKTFIQQSNLDRHERVH 456
+ C C K+F + L RH R H
Sbjct: 1 FKCPLCGKSFSSKDALKRHLRKH 23
>gnl|CDD|224384 COG1467, PRI1, Eukaryotic-type DNA primase, catalytic (small)
subunit [DNA replication, recombination, and repair].
Length = 341
Score = 29.3 bits (66), Expect = 5.7
Identities = 13/58 (22%), Positives = 21/58 (36%), Gaps = 14/58 (24%)
Query: 408 CKLCGKRFTQQANLV----------KHNRL-HSGERPYHCRYCTKTFIQQSNLDRHER 454
CK+C + + L+ K ++ SG R YH + + L ER
Sbjct: 116 CKMCLEDKKEAVRLLNDFLREDFGFKDIKIVFSGRRGYHVHVSDEEVLS---LGSEER 170
>gnl|CDD|233418 TIGR01448, recD_rel, helicase, putative, RecD/TraA family. This
model describes a family similar to RecD, the
exodeoxyribonuclease V alpha chain of TIGR01447. Members
of this family, however, are not found in a context of
RecB and RecC and are longer by about 200 amino acids at
the amino end. Chlamydia muridarum has both a member of
this family and a RecD [Unknown function, Enzymes of
unknown specificity].
Length = 720
Score = 29.4 bits (66), Expect = 6.2
Identities = 11/37 (29%), Positives = 17/37 (45%)
Query: 486 GIGKPGVNKGTNTHNCEEKCSIPVLLCSKTGKILKKL 522
G GK + + E +PV L + TG+ K+L
Sbjct: 348 GTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL 384
>gnl|CDD|206083 pfam13912, zf-C2H2_6, C2H2-type zinc finger.
Length = 27
Score = 25.6 bits (57), Expect = 6.3
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 406 YSCKLCGKRFTQQANLVKHNRLH 428
++C +CGK F+ L H + H
Sbjct: 2 HTCGVCGKTFSSLQALGGHKKSH 24
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.136 0.454
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 26,429,195
Number of extensions: 2372246
Number of successful extensions: 2162
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2132
Number of HSP's successfully gapped: 86
Length of query: 543
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 441
Effective length of database: 6,413,494
Effective search space: 2828350854
Effective search space used: 2828350854
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.2 bits)