BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2728
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q2KMM2|TPPC1_RAT Trafficking protein particle complex subunit 1 OS=Rattus norvegicus
GN=Trappc1 PE=2 SV=1
Length = 145
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+ +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 127 RKFLASVYSKVYV 139
R L +YS +YV
Sbjct: 94 RDVLHHIYSALYV 106
>sp|Q5NCF2|TPPC1_MOUSE Trafficking protein particle complex subunit 1 OS=Mus musculus
GN=Trappc1 PE=1 SV=1
Length = 145
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 58/73 (79%)
Query: 67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
E KLMYGMLFS++SFVSK+SPLD K GFLS++T++Y LH YETPTG+K V+NTD+ +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 127 RKFLASVYSKVYV 139
R L +YS +YV
Sbjct: 94 RDVLHHIYSALYV 106
>sp|Q9Y5R8|TPPC1_HUMAN Trafficking protein particle complex subunit 1 OS=Homo sapiens
GN=TRAPPC1 PE=1 SV=1
Length = 145
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+ +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 127 RKFLASVYSKVYV 139
R L +YS +YV
Sbjct: 94 RDVLHHIYSALYV 106
>sp|Q17QI1|TPPC1_BOVIN Trafficking protein particle complex subunit 1 OS=Bos taurus
GN=TRAPPC1 PE=2 SV=1
Length = 145
Score = 95.9 bits (237), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
E KLMYGMLFS++SFVSK+SPLD K GFL+++T++Y LH YETPTG+K V+NTD+ +
Sbjct: 34 EYKLMYGMLFSIRSFVSKMSPLDMKDGFLAFQTSRYKLHYYETPTGIKVVMNTDLGVGPI 93
Query: 127 RKFLASVYSKVYV 139
R L +YS +YV
Sbjct: 94 RDVLHHIYSALYV 106
>sp|Q557G3|TPPC1_DICDI Trafficking protein particle complex subunit 1 OS=Dictyostelium
discoideum GN=trappc1-1 PE=3 SV=1
Length = 142
Score = 72.8 bits (177), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 53/75 (70%), Gaps = 2/75 (2%)
Query: 67 EGKLMYGMLFSLKSFVSKISP--LDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ 124
+ KL++GML+SLK+F++ SP +D KTGF YKT+ Y LH YET + +KF++ +D
Sbjct: 32 DQKLLFGMLYSLKAFITSSSPKKIDDKTGFHCYKTSTYKLHYYETLSCIKFIIMSDPNVP 91
Query: 125 DVRKFLASVYSKVYV 139
D+R L +YS+++V
Sbjct: 92 DLRDDLKKIYSQIFV 106
>sp|Q03630|BET5_YEAST Trafficking protein particle complex subunit BET5 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=BET5 PE=1
SV=1
Length = 159
Score = 60.1 bits (144), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 43/73 (58%)
Query: 67 EGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDV 126
+ KL+YGM+FSL+S K+S K S T KY +H Y T +GL FVL +D + Q
Sbjct: 40 DAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTYCTASGLWFVLLSDFKQQSY 99
Query: 127 RKFLASVYSKVYV 139
+ L +YS +YV
Sbjct: 100 TQVLQYIYSHIYV 112
>sp|Q9UT70|BET5_SCHPO Transport protein particle subunit bet5 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=bet5 PE=3 SV=2
Length = 155
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 46/71 (64%), Gaps = 2/71 (2%)
Query: 69 KLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRK 128
KL++G++FSL++ V KI+ + F+SY T+KY LH YETPT L+ + T+ + +
Sbjct: 47 KLIFGVVFSLRNMVKKITA--DQDQFMSYTTSKYKLHFYETPTNLRLIFITNPKIDSLTH 104
Query: 129 FLASVYSKVYV 139
L +Y+ +YV
Sbjct: 105 VLQQIYTTLYV 115
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69 KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
KLM +F SL + S++SP +G +T + LH Y+T TG+KFV+ D + +
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
L +Y
Sbjct: 168 SLLRKIY 174
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 40.8 bits (94), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69 KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
KLM +F SL + S++SP +G +T + LH Y+T TG+KFV+ D + +
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
L +Y
Sbjct: 168 SLLRKIY 174
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69 KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
KLM +F SL + S++SP +G +T + LH ++T TG+KFV+ D + +
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
L +Y
Sbjct: 168 SLLRKIY 174
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 39.7 bits (91), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69 KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
KLM +F SL + S++SP +G +T + LH ++T TG+KFV+ D + +
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
L +Y
Sbjct: 168 SLLRKIY 174
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 39.3 bits (90), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 1/67 (1%)
Query: 69 KLMYGMLF-SLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
KLM +F SL + S++SP +G +T + LH ++T TG+KFV+ D + +
Sbjct: 108 KLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCFQTLTGIKFVVLADPRQAGID 167
Query: 128 KFLASVY 134
L +Y
Sbjct: 168 SLLRKIY 174
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 36.2 bits (82), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 70 LMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKF 129
++ G + + + ++ISPL +G + + +H+ +T TG+KFVL T+ + + R
Sbjct: 33 VLAGTIHGVHAISTQISPLPGSSGIQLLEAGTFNMHILQTHTGMKFVLFTEKKTTNARLQ 92
Query: 130 LASVY 134
L Y
Sbjct: 93 LQKFY 97
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 1/59 (1%)
Query: 77 SLKSFVSKISPLD-SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVY 134
SL + S +SP+ S +G +T + L ++T TG+KF + D Q + + L VY
Sbjct: 41 SLHAIASNLSPVSGSSSGIEVIETEAFKLQCFQTHTGIKFYVIADPNHQQLEELLHGVY 99
>sp|P23734|PP12_TRYBB Serine/threonine-protein phosphatase PP1(5.9) OS=Trypanosoma brucei
brucei PE=3 SV=2
Length = 346
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 28 EYPKPLIGYDRSATPADVYRLILGQSVDHGSQS--ALMLMIEGKLMYGMLFSLKSFVSKI 85
+Y L +D P D + LG VD G QS + L++ KL + F L +
Sbjct: 106 QYTDLLRLFDLGGFPPDANYIFLGDYVDRGDQSLETICLLLAYKLSFPETFFLLRGNHEC 165
Query: 86 SPLDSKTGFLSYKTTKYALHLYE 108
S ++ GF +Y++ L++
Sbjct: 166 SSINRIYGFFDECKRRYSVRLWK 188
>sp|Q6DCZ7|FBP1L_XENLA Formin-binding protein 1-like OS=Xenopus laevis GN=fnbp1l PE=1 SV=1
Length = 543
Score = 31.2 bits (69), Expect = 2.0, Method: Composition-based stats.
Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 8 EHRPHPQEYHHPKQEYHPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIE 67
E R PQ + HP+ + + P P IG+ +S P D G+ + M E
Sbjct: 455 EGRVQPQHHAHPEFDDEFDDDEPLPAIGHCKSLYPFD------------GNNEGTLAMKE 502
Query: 68 GKLMY 72
G+++Y
Sbjct: 503 GEVLY 507
>sp|P23733|PP11_TRYBB Serine/threonine-protein phosphatase PP1(4.8) OS=Trypanosoma brucei
brucei PE=3 SV=2
Length = 346
Score = 31.2 bits (69), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 37/83 (44%), Gaps = 2/83 (2%)
Query: 28 EYPKPLIGYDRSATPADVYRLILGQSVDHGSQS--ALMLMIEGKLMYGMLFSLKSFVSKI 85
+Y L +D P D + LG VD G QS + L++ KL + F L +
Sbjct: 106 QYTDLLRLFDLGGFPPDANYIFLGDYVDRGDQSLERICLLLAYKLSFPETFFLLRGNHEC 165
Query: 86 SPLDSKTGFLSYKTTKYALHLYE 108
S ++ GF +Y++ L++
Sbjct: 166 SSINRIYGFFDECKRRYSVRLWK 188
>sp|Q2KDZ5|IF2_RHIEC Translation initiation factor IF-2 OS=Rhizobium etli (strain CFN 42
/ ATCC 51251) GN=infB PE=3 SV=1
Length = 916
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/60 (30%), Positives = 28/60 (46%), Gaps = 3/60 (5%)
Query: 6 APE-HRPHPQEYHHPKQEYHPKQ--EYPKPLIGYDRSATPADVYRLILGQSVDHGSQSAL 62
AP H+P Q P+Q Y P + + P+P++ S D R L +S +Q A+
Sbjct: 89 APRIHQPGGQANQRPQQSYQPPRANDRPRPVVLNHLSPEEMDARRRALAESQARDAQDAI 148
>sp|P50489|AMA1_PLAFC Apical membrane antigen 1 OS=Plasmodium falciparum (isolate Camp
/ Malaysia) GN=AMA-1 PE=1 SV=1
Length = 622
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 8 EHRPHPQEYHHPKQEYHPKQE 28
EHR HP+EY +P + H Q+
Sbjct: 43 EHREHPKEYQYPLHQEHTYQQ 63
>sp|P22621|AMA1_PLAFF Apical membrane antigen 1 OS=Plasmodium falciparum (isolate FC27
/ Papua New Guinea) GN=AMA-1 PE=1 SV=1
Length = 622
Score = 30.0 bits (66), Expect = 4.9, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 8 EHRPHPQEYHHPKQEYHPKQE 28
EHR HP+EY +P + H Q+
Sbjct: 43 EHREHPKEYQYPLHQEHTYQQ 63
>sp|P50490|AMA1_PLAFG Apical membrane antigen 1 OS=Plasmodium falciparum (isolate FCR-3
/ Gambia) GN=AMA-1 PE=3 SV=1
Length = 622
Score = 29.6 bits (65), Expect = 5.2, Method: Composition-based stats.
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 8 EHRPHPQEYHHPKQEYHPKQE 28
EHR HP+EY +P + H Q+
Sbjct: 43 EHREHPKEYEYPLHQEHTYQQ 63
>sp|P13865|PRO1_LEIEN Probable transport protein OS=Leishmania enriettii GN=PRO-1 PE=2
SV=1
Length = 567
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Query: 48 LILGQSV--DHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGF 94
L LGQS+ DH +M ++G ++ LFSL + V I +S+ F
Sbjct: 270 LALGQSIRFDHDGDQKVMARMQGLCVFSTLFSLLTVVLGIVTRESRAKF 318
>sp|Q8N1T3|MYO1H_HUMAN Unconventional myosin-Ih OS=Homo sapiens GN=MYO1H PE=2 SV=2
Length = 1032
Score = 29.3 bits (64), Expect = 7.5, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 34/75 (45%), Gaps = 10/75 (13%)
Query: 24 HPKQEYPKPLIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKS--- 80
H K +Y P+I YDR A +LIL Q + + A I+ K+ Y L + +
Sbjct: 886 HEKIQYGVPVIKYDRKGFKARQRQLILTQKAAYVVELA---KIKQKIEYSALKGVSTSNL 942
Query: 81 ----FVSKISPLDSK 91
V +SP DSK
Sbjct: 943 SDGILVIHVSPEDSK 957
>sp|P23880|PP12_SCHPO Serine/threonine-protein phosphatase PP1-2 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=sds21 PE=3 SV=1
Length = 322
Score = 29.3 bits (64), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 28 EYPKPLIGYDRSATPADVYRLILGQSVDHGSQS--ALMLMIEGKLMYGMLFSLKSFVSKI 85
+Y L ++ P D L LG VD G QS + L+ K+ Y F L +
Sbjct: 64 QYSDLLRLFEYGGYPPDANYLFLGDYVDRGKQSLEVICLLFAYKIKYPENFFLLRGNHEF 123
Query: 86 SPLDSKTGFLSYKTTKYALHLYETPT 111
+ ++ GF +Y++ L++T T
Sbjct: 124 ASINRIYGFYDECKRRYSIKLWKTFT 149
>sp|P48486|PP16_ARATH Serine/threonine-protein phosphatase PP1 isozyme 6 OS=Arabidopsis
thaliana GN=TOPP6 PE=2 SV=2
Length = 322
Score = 29.3 bits (64), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 38/86 (44%), Gaps = 2/86 (2%)
Query: 28 EYPKPLIGYDRSATPADVYRLILGQSVDHGSQS--ALMLMIEGKLMYGMLFSLKSFVSKI 85
++P L ++ P L LG VD G QS + L++ K+ Y F L +
Sbjct: 65 QFPDLLRLFEYGGYPPAANYLFLGDYVDRGKQSIETICLLLAYKVKYKFNFFLLRGNHEC 124
Query: 86 SPLDSKTGFLSYKTTKYALHLYETPT 111
+ ++ GF +Y + L++T T
Sbjct: 125 ASINRVYGFYDECKRRYNVRLWKTFT 150
>sp|Q5B4Q8|EAF1_EMENI Chromatin modification-related protein eaf1 OS=Emericella nidulans
(strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 /
M139) GN=eaf1 PE=3 SV=1
Length = 1447
Score = 28.9 bits (63), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 7 PEHRPHPQEYHHPKQEYHPKQEYPKPLIGY 36
PE+R H ++ HP Q + P EYP P +G+
Sbjct: 808 PENR-HIRDRIHPAQPFRPPTEYPMPSLGF 836
>sp|A4G9U5|RPOB_HERAR DNA-directed RNA polymerase subunit beta OS=Herminiimonas
arsenicoxydans GN=rpoB PE=3 SV=1
Length = 1368
Score = 28.9 bits (63), Expect = 8.9, Method: Composition-based stats.
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 116 VLNTDVQAQDVRKFLASVYSK 136
+LNT VQ ++RKFLA++Y++
Sbjct: 1150 MLNTQVQIAELRKFLAAIYNE 1170
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.134 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,673,994
Number of Sequences: 539616
Number of extensions: 2019943
Number of successful extensions: 5542
Number of sequences better than 100.0: 48
Number of HSP's better than 100.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 5440
Number of HSP's gapped (non-prelim): 108
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)