Query psy2728
Match_columns 139
No_of_seqs 115 out of 316
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 23:42:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2728.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2728hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3t_C Trafficking protein par 100.0 7.9E-31 2.7E-35 198.3 9.5 100 40-139 1-106 (145)
2 3cue_C Transport protein parti 100.0 2.1E-30 7.1E-35 199.2 8.2 100 40-139 1-112 (159)
3 3cue_A Transport protein parti 100.0 6.2E-30 2.1E-34 206.4 10.4 97 40-139 1-187 (219)
4 2j3t_D Trafficking protein par 99.9 1E-25 3.5E-30 181.8 10.1 75 64-139 104-178 (219)
5 2j3w_A Sedlin, trafficking pro 99.8 1.5E-20 5.1E-25 141.1 9.2 96 39-139 2-109 (142)
6 3pr6_A Trapp-associated protei 97.1 0.00042 1.4E-08 53.5 4.5 94 35-139 15-122 (162)
7 3bw6_A Synaptobrevin homolog Y 85.5 1.7 5.9E-05 31.6 5.7 45 76-124 46-90 (144)
8 3kyq_A YKT6, synaptobrevin hom 80.8 6.1 0.00021 30.4 7.4 57 74-134 41-99 (199)
9 2vx8_A Nucleoporin-like protei 78.6 8 0.00027 29.1 7.2 53 78-134 72-126 (169)
10 2nut_C Vesicle-trafficking pro 76.1 8.3 0.00028 29.0 6.7 54 78-134 38-93 (196)
11 3msh_A Hepatitis B virus X-int 55.6 32 0.0011 24.1 5.9 46 71-117 41-86 (99)
12 4afi_A AP-3 complex subunit de 45.7 41 0.0014 25.2 5.5 43 78-124 82-124 (173)
13 4b93_A Vesicle-associated memb 41.9 43 0.0015 25.1 5.1 42 79-124 31-72 (189)
14 2x5c_A Hypothetical protein OR 28.9 76 0.0026 22.7 4.3 32 103-134 63-101 (131)
15 1w63_Q Adapter-related protein 24.0 2E+02 0.0069 20.6 8.1 82 33-134 5-88 (158)
No 1
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=99.97 E-value=7.9e-31 Score=198.34 Aligned_cols=100 Identities=48% Similarity=0.766 Sum_probs=89.4
Q ss_pred ceeeeeee------eeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCc
Q psy2728 40 ATPADVYR------LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGL 113 (139)
Q Consensus 40 m~v~sl~I------LIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGl 113 (139)
|++|++|| |||+++|.+.++++...+||.++|+|++|||++|++||+|.++++||++++|++||+|||||+||+
T Consensus 1 M~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 1 MTVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSFQTSRYKLHYYETPTGI 80 (145)
T ss_dssp -CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEEECSSCEEEEEECTTSC
T ss_pred CeEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEecCCEEEEEEEcCCCC
Confidence 67888888 899999986432232238999999999999999999999998889999999999999999999999
Q ss_pred EEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728 114 KFVLNTDVQAQDVRKFLASVYSKVYV 139 (139)
Q Consensus 114 KFVL~Td~~~~~l~~~L~~IY~elYv 139 (139)
||||+||+++++++++|++||+++||
T Consensus 81 KFvl~td~~~~~i~~~l~~iy~~lYv 106 (145)
T 2j3t_C 81 KVVMNTDLGVGPIRDVLHHIYSALYV 106 (145)
T ss_dssp EEEEEECTTCCCCHHHHHHHHHTTHH
T ss_pred EEEEEecCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999988985
No 2
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=2.1e-30 Score=199.16 Aligned_cols=100 Identities=33% Similarity=0.459 Sum_probs=86.8
Q ss_pred ceeeeeee------eeecccCCCCC------CCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEe
Q psy2728 40 ATPADVYR------LILGQSVDHGS------QSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLY 107 (139)
Q Consensus 40 m~v~sl~I------LIy~re~~~~~------~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ 107 (139)
|++|++|| |||+|+|.+.+ .....++||.++++|++|||++|++||+|.+..+||++++|++||||||
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f~~~~T~~ykl~~~ 80 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDIRSISTGKYRVHTY 80 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCEEEEECSSCBEEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCeEEEeeCCEEEEEE
Confidence 67788888 89999997521 1124568999999999999999999999998789999999999999999
Q ss_pred eCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728 108 ETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV 139 (139)
Q Consensus 108 ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv 139 (139)
||+||+||||+||+++.+++++|++||.++||
T Consensus 81 eT~TgiKFvl~td~~~~~i~~~l~~iy~~lYv 112 (159)
T 3cue_C 81 CTASGLWFVLLSDFKQQSYTQVLQYIYSHIYV 112 (159)
T ss_dssp CCSSCCEEEEECCSSSSCTHHHHHHHHHHHHH
T ss_pred EeCCCCEEEEEeCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999944985
No 3
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=99.96 E-value=6.2e-30 Score=206.45 Aligned_cols=97 Identities=24% Similarity=0.360 Sum_probs=87.3
Q ss_pred ceeeeeee------eeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCC------------------------
Q psy2728 40 ATPADVYR------LILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLD------------------------ 89 (139)
Q Consensus 40 m~v~sl~I------LIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~------------------------ 89 (139)
|+||+||| |||+|+|+++ ..++++||+++|||||||||+|++||+|..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~--~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~ 78 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTND--EQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSN 78 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSC--CCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC---
T ss_pred CeeEEEEEEeCCCCEEeehhhccC--cCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccc
Confidence 67788888 8999999875 345789999999999999999999999965
Q ss_pred ------------------------------------CCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCc----------
Q psy2728 90 ------------------------------------SKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQA---------- 123 (139)
Q Consensus 90 ------------------------------------~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~---------- 123 (139)
+++||+.++|++|++|||||+||+||||++|+..
T Consensus 79 ~~~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~ 158 (219)
T 3cue_A 79 RSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATT 158 (219)
T ss_dssp -------------------------CCSCCSCCCCCCSSSCCEEEESSCEEEEEECTTSCEEEEEESSCC----------
T ss_pred ccccccccccccccccccccccccccccccccccccCCCceEEEEeCCEEEEEEEcCCCCEEEEEecCCCcccccccccc
Confidence 2459999999999999999999999999999998
Q ss_pred --------------hhHHHHHHHHhhhccC
Q psy2728 124 --------------QDVRKFLASVYSKVYV 139 (139)
Q Consensus 124 --------------~~l~~~L~~IY~elYv 139 (139)
.+++++|++|| ++||
T Consensus 159 ~~~~~~~~~s~l~e~~ir~ff~~VY-elYv 187 (219)
T 3cue_A 159 DKPDRPKSTSNLAIQIADNFLRKVY-CLYS 187 (219)
T ss_dssp ----------CHHHHHHHHHHHHHH-HHHH
T ss_pred cccccccccccchHHHHHHHHHHHH-HHHH
Confidence 78999999999 9996
No 4
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=99.93 E-value=1e-25 Score=181.79 Aligned_cols=75 Identities=29% Similarity=0.501 Sum_probs=71.5
Q ss_pred CcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchhHHHHHHHHhhhccC
Q psy2728 64 LMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQDVRKFLASVYSKVYV 139 (139)
Q Consensus 64 ~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~l~~~L~~IY~elYv 139 (139)
++|+.++|+|++|||++|++||+|.++++||++++|+.||+|||||+||+||||+||++..+++.+|++|| ++|+
T Consensus 104 ~sn~~L~lag~lhSLd~i~~klsp~~~s~g~~~~~T~~ykl~~y~T~TgiKFVLltd~~~~~ir~~l~~Iy-elYv 178 (219)
T 2j3t_D 104 TSNEKLMLASMFHSLFAIGSQLSPEQGSSGIEMLETDTFKLHCYQTLTGIKFVVLADPRQAGIDSLLRKIY-EIYS 178 (219)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTCSSSSCCSCSEEEESSCEEEEEECTTSCEEEEEECTTCCCHHHHHHHHH-HHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHhCCCCCCCCeeEEecCceEEEEEEcCCCCEEEEEecCCchHHHHHHHHHH-HHHH
Confidence 56688899999999999999999988788999999999999999999999999999999999999999999 8985
No 5
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=99.83 E-value=1.5e-20 Score=141.07 Aligned_cols=96 Identities=13% Similarity=0.162 Sum_probs=80.3
Q ss_pred Cce-eeeeee------eeecccCCCCCCCccCCcchhhhhH-HhHHHHHHHHhhhCCCCCCCC---eEEEEeCCEEEEEe
Q psy2728 39 SAT-PADVYR------LILGQSVDHGSQSALMLMIEGKLMY-GMLFSLKSFVSKISPLDSKTG---FLSYKTTKYALHLY 107 (139)
Q Consensus 39 ~m~-v~sl~I------LIy~re~~~~~~~~~~~sne~klLa-G~lhSL~ais~kLsP~~~~~G---~~s~eT~~ykLh~~ 107 (139)
.|+ +++++| |||.++|.+.+ .....++.++++ +++||++.++.+++|.. +| .....++.|++|||
T Consensus 2 ~M~~i~~~~Ii~~~~~ply~~~~~~~~--~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~--~~~~l~~~~~~~~y~v~~~ 77 (142)
T 2j3w_A 2 EMSGSFYFVIVGHHDNPVFEMEFLPPG--KAESKDDHRHLNQFIAHAALDLVDENMWLS--NNMYLKTVDKFNEWFVSAF 77 (142)
T ss_dssp CCCCCEEEEEECTTSCEEEEEEECCSC--CGGGHHHHHHHHHHHHHHHHHHHHHHGGGC--SCSEEEEEEEETTEEEEEE
T ss_pred ccceEEEEEEEeCCCCEEEEEecCCcC--cCCccHHHHHHHHHHHHHHHHHHHHhcCCC--CcceeEeeecccceEEEEE
Confidence 366 888888 89999998632 223455677888 99999999999999864 45 45666789999999
Q ss_pred eCCCCcEEEEEeCC-CchhHHHHHHHHhhhccC
Q psy2728 108 ETPTGLKFVLNTDV-QAQDVRKFLASVYSKVYV 139 (139)
Q Consensus 108 ET~TGlKFVL~Td~-~~~~l~~~L~~IY~elYv 139 (139)
||+||+||||++|+ +..+++.+|++|| ++|+
T Consensus 78 ~T~tg~Kfvl~~d~~~~~~i~~~~~~iy-~~Y~ 109 (142)
T 2j3w_A 78 VTAGHMRFIMLHDVRQEDGIKNFFTDVY-DLYI 109 (142)
T ss_dssp ECTTCCEEEEEESSCCHHHHHHHHHHHH-HHHH
T ss_pred EcCCCcEEEEEeCCCCcHHHHHHHHHHH-HHHH
Confidence 99999999999999 5999999999999 8985
No 6
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=97.13 E-value=0.00042 Score=53.49 Aligned_cols=94 Identities=20% Similarity=0.202 Sum_probs=57.1
Q ss_pred EecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHH-HHHHHhhhCCCCC---CCCeE-EEEeCCEEEEEee-
Q psy2728 35 GYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFS-LKSFVSKISPLDS---KTGFL-SYKTTKYALHLYE- 108 (139)
Q Consensus 35 ~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhS-L~ais~kLsP~~~---~~G~~-s~eT~~ykLh~~E- 108 (139)
+++++-.. ||=+.+... ..+.|+.+-.-=++|+ |=-|-.+++-... ..++. .+.++.++.+.|.
T Consensus 15 IIg~~n~P------LyI~~~~~~----~~~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~i 84 (162)
T 3pr6_A 15 LIDESDKP------ILIYVPNEA----ENEMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLI 84 (162)
T ss_dssp EECTTSCE------EEEECCC-----------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEEC
T ss_pred EECCCCce------eEEEeCCCc----cccccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEE
Confidence 45555555 455555431 1123444444444444 6667777642211 12333 5568999999999
Q ss_pred CCCCcEEEEEeCCC------c--hhHHHHHHHHhhhccC
Q psy2728 109 TPTGLKFVLNTDVQ------A--QDVRKFLASVYSKVYV 139 (139)
Q Consensus 109 T~TGlKFVL~Td~~------~--~~l~~~L~~IY~elYv 139 (139)
|.||+|||+..|.+ . .+++.+++++| ++|+
T Consensus 85 Tnt~vKfVl~~d~~~~~~~~D~~~~Ik~~F~~vh-~~Yv 122 (162)
T 3pr6_A 85 KQTGLKIVIGFEQKSLSGADDEFEAINQIFETVR-KIYI 122 (162)
T ss_dssp TTTCCEEEEEEEGGGCCCCHHHHHHHHHHHHHHH-HHHH
T ss_pred cCCceEEEEEEccCCcccccchHHHHHHHHHHHH-HHHH
Confidence 99999999988753 2 57888899999 8884
No 7
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=85.50 E-value=1.7 Score=31.63 Aligned_cols=45 Identities=24% Similarity=0.239 Sum_probs=35.7
Q ss_pred HHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCch
Q psy2728 76 FSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ 124 (139)
Q Consensus 76 hSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~ 124 (139)
+--+.++.|+.|. .=.+++.+.|.+|++-.-.|+=++++||.+-+
T Consensus 46 ~~ar~i~~r~~~~----~R~sv~~~~y~fH~~~~~~gl~~l~i~D~~yp 90 (144)
T 3bw6_A 46 FFAETVASRTGAG----QRQSIEEGNYIGHVYARSEGICGVLITDKEYP 90 (144)
T ss_dssp HHHHHHHHHCCTT----EEEEEEETTEEEEEEECTTSEEEEEEEETTSC
T ss_pred HHHHHHHhhCCCC----ceEEEEeCCEEEEEEEecCCEEEEEEECCCCC
Confidence 3456666666552 46789999999999977899999999998855
No 8
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=80.77 E-value=6.1 Score=30.39 Aligned_cols=57 Identities=23% Similarity=0.251 Sum_probs=41.9
Q ss_pred hHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchh--HHHHHHHHh
Q psy2728 74 MLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQD--VRKFLASVY 134 (139)
Q Consensus 74 ~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~--l~~~L~~IY 134 (139)
+-+.-+.++.++.|. .=.+++.+.|.+|+|-...|+=++++||.+-+. .-.+|.+|.
T Consensus 41 ~~f~~r~il~r~~~~----~r~s~~~~~y~fH~y~~~~gl~yl~itd~~yp~r~AF~fL~ei~ 99 (199)
T 3kyq_A 41 MTFTSQLIVERSAKG----SRASVKEQEYLCHVYVRSDSLAGVVIADSEYPSRVAFTLLEKVL 99 (199)
T ss_dssp HHHHHHHHHHTSCTT----EEEEEECSSEEEEEEECTTSEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCC----CeEEEEeCCEEEEEEEecCCEEEEEEECCCCCHHHHHHHHHHHH
Confidence 445556788886663 357899999999998899999999999988653 233444443
No 9
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=78.58 E-value=8 Score=29.08 Aligned_cols=53 Identities=21% Similarity=0.294 Sum_probs=40.7
Q ss_pred HHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchh--HHHHHHHHh
Q psy2728 78 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQD--VRKFLASVY 134 (139)
Q Consensus 78 L~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~--l~~~L~~IY 134 (139)
.+.+..++.|. .+-.+++.+.|.+|++- -.|+=|++++|...+. .-.+|.+|-
T Consensus 72 ak~ll~kl~~~---~~r~s~~~~~y~fHyl~-~ngl~yl~I~D~~yp~r~AF~fLedI~ 126 (169)
T 2vx8_A 72 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFERSRAFSFLNEVK 126 (169)
T ss_dssp HHHHHTTSCSS---CEEEEEEETTEEEEEEE-ETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHhhCCCC---CCceEEEECCEEEEEEE-ECCEEEEEEEccccchHHHHHHHHHHH
Confidence 57778888773 35778999999999997 5799999999988553 345555554
No 10
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=76.08 E-value=8.3 Score=29.00 Aligned_cols=54 Identities=9% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCchh--HHHHHHHHh
Q psy2728 78 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQD--VRKFLASVY 134 (139)
Q Consensus 78 L~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~~--l~~~L~~IY 134 (139)
.+.+..+|.|.. .+-.+++.+.|.+|| -.-.|+=|+++||.+.+. .-.+|.+|.
T Consensus 38 a~~il~ki~~~~--~~r~s~~~~~y~fhy-~~~~gl~~l~i~d~~yp~r~af~fL~~i~ 93 (196)
T 2nut_C 38 AKQLFRKLNEQS--PTRCTLEAGAMTFHY-IIEQGVCYLVLCEAAFPKKLAFAYLEDLH 93 (196)
T ss_dssp HHHHHHHCCTTS--CSEEEEEETTEEEEE-EEETTEEEEEEEETTSCHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCC--CCeEEEEeCCEEEEE-EeCCCeEEEEEEcCCcchHHHHHHHHHHH
Confidence 467777887632 456789999999995 447999999999988653 244555554
No 11
>3msh_A Hepatitis B virus X-interacting protein; alpha-beta proteins, profilin-like fold, roadblock/LC7 domai superfamily, protein binding; HET: PG4; 1.51A {Homo sapiens} PDB: 3ms6_A*
Probab=55.63 E-value=32 Score=24.13 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=35.1
Q ss_pred hHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEE
Q psy2728 71 MYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVL 117 (139)
Q Consensus 71 LaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL 117 (139)
-+|.+.+|...|+||.|.....-.-.+|+++-++...+ --|+-..+
T Consensus 41 ~AG~i~~la~~AakL~p~~~~~P~I~LEsDs~~~~Iqk-~~~iTvAV 86 (99)
T 3msh_A 41 HAGVISVLAQQAAKLTSDPTDIPVVCLESDNGNIMIQK-HDGITVAV 86 (99)
T ss_dssp GHHHHHHHHHHHHHTCCCSSCCCCEEEEETTEEEEEEE-ETTEEEEE
T ss_pred cchHHHHHHHHHHhcCCCCCCCCEEEEEeCCceEEEEe-CCcEEEEE
Confidence 48999999999999999865567889999998876655 33343333
No 12
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=45.66 E-value=41 Score=25.20 Aligned_cols=43 Identities=19% Similarity=0.293 Sum_probs=34.0
Q ss_pred HHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCch
Q psy2728 78 LKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ 124 (139)
Q Consensus 78 L~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~ 124 (139)
.+.+..|+.|. .+-.+++.+.|.+|++- -.|+-|+++||.+.+
T Consensus 82 a~~iL~kip~~---~~r~t~~~~~y~fHyl~-~dgl~yl~i~D~~~~ 124 (173)
T 4afi_A 82 TEQILAKIPSE---NNKLTYSHGNYLFHYIC-QDRIVYLCITDDDFE 124 (173)
T ss_dssp HHHHHTTSCSS---SEEEEEEETTEEEEEEE-ETTEEEEEEEETTSC
T ss_pred HHHHHHhCCCC---CCeEEEEECCEEEEEEE-ECCEEEEEEECCccC
Confidence 34556666664 35778999999999997 489999999998854
No 13
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=41.85 E-value=43 Score=25.08 Aligned_cols=42 Identities=19% Similarity=0.330 Sum_probs=32.7
Q ss_pred HHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCCcEEEEEeCCCch
Q psy2728 79 KSFVSKISPLDSKTGFLSYKTTKYALHLYETPTGLKFVLNTDVQAQ 124 (139)
Q Consensus 79 ~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TGlKFVL~Td~~~~ 124 (139)
+.+-.+|.|. ++-.+++.+.|.+||. .-.|+-|+++||.+.+
T Consensus 31 ~~iL~kip~~---~~k~s~~~~~y~fHyl-~~~gl~yl~i~d~~yp 72 (189)
T 4b93_A 31 EQILAKIPSE---NNKLTYSHGNYLFHYI-CQDRIVYLCITDDDFE 72 (189)
T ss_dssp HHHHTTCCSS---SEEEEEEETTEEEEEE-EETTEEEEEEEETTSC
T ss_pred HHHHHhCCCC---CCeEEEEECCEEEEEE-EeCCeEEEEEEcCccC
Confidence 3455666553 4678999999999965 5689999999998855
No 14
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=28.88 E-value=76 Score=22.66 Aligned_cols=32 Identities=19% Similarity=0.400 Sum_probs=23.8
Q ss_pred EEEEeeCCCCcEEEEEeCCC-------chhHHHHHHHHh
Q psy2728 103 ALHLYETPTGLKFVLNTDVQ-------AQDVRKFLASVY 134 (139)
Q Consensus 103 kLh~~ET~TGlKFVL~Td~~-------~~~l~~~L~~IY 134 (139)
.....||-.|+|.+++-.|+ ..++..+|+++-
T Consensus 63 svsivetkngykylvirhpdggthtvpktdisailkelc 101 (131)
T 2x5c_A 63 SVSIVETKNGYKYLVIRHPDGGTHTVPKTDISAILKELC 101 (131)
T ss_dssp EEEEEECTTSCEEEEEECTTSCEEECCTTCCHHHHHHHH
T ss_pred ceEEEEecCCcEEEEEECCCCCccccccccHHHHHHHHH
Confidence 35567899999999998876 346677777654
No 15
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=24.04 E-value=2e+02 Score=20.57 Aligned_cols=82 Identities=11% Similarity=0.018 Sum_probs=45.7
Q ss_pred eEEecCCceeeeeeeeeecccCCCCCCCccCCcchhhhhHHhHHHHHHHHhhhCCCCCCCCeEEEEeCCEEEEEeeCCCC
Q psy2728 33 LIGYDRSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVSKISPLDSKTGFLSYKTTKYALHLYETPTG 112 (139)
Q Consensus 33 ~~~~~~~m~v~sl~ILIy~re~~~~~~~~~~~sne~klLaG~lhSL~ais~kLsP~~~~~G~~s~eT~~ykLh~~ET~TG 112 (139)
+.+.|+.|.+ +..|.|... ...+.+.+..-++. +++..+. .-=..++.+.+++-+ .-..+
T Consensus 5 i~Il~~~Gk~------~lsk~y~~~------~~~~~~~~~~~~~~------~i~~~~~-~~~~~i~~~~~~~vy-~~~~~ 64 (158)
T 1w63_Q 5 MLLFSRQGKL------RLQKWYLAT------SDKERKKMVRELMQ------VVLARKP-KMCSFLEWRDLKVVY-KRYAS 64 (158)
T ss_dssp EEEECSSSCE------EEEEESSCC------CHHHHHHHHHHHHH------HHHTSCS-SSCSEEEETTEEEEE-EEETT
T ss_pred EEEECCCCCE------EEEEeCCCC------CHHHHHHHHHHHHH------HHhccCC-CCCCeEEECCEEEEE-EEECC
Confidence 4556666666 888888641 22333334333432 2222111 112356778888755 55778
Q ss_pred cEEEEEeCCCchhH--HHHHHHHh
Q psy2728 113 LKFVLNTDVQAQDV--RKFLASVY 134 (139)
Q Consensus 113 lKFVL~Td~~~~~l--~~~L~~IY 134 (139)
+-|++.++.+...+ -++|+++.
T Consensus 65 Lyfv~~~~~~~Nel~~le~L~~~v 88 (158)
T 1w63_Q 65 LYFCCAIEGQDNELITLELIHRYV 88 (158)
T ss_dssp EEEEEEECSSSCHHHHHHHHHHHH
T ss_pred EEEEEEecCCCCHHHHHHHHHHHH
Confidence 99999998875433 44455444
Done!