RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2728
         (139 letters)



>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 140

 Score = 50.7 bits (121), Expect = 1e-09
 Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 1/72 (1%)

Query: 69  KLMYGMLFSLKSFVSKISPLDSKTGF-LSYKTTKYALHLYETPTGLKFVLNTDVQAQDVR 127
            L   +  +    V +   L +        K  ++ +  + T   ++F++  DV+ +D  
Sbjct: 36  HLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGI 95

Query: 128 KFLASVYSKVYV 139
           K   +    +Y+
Sbjct: 96  KNFFTDVYDLYI 107


>d1ik7a_ a.77.1.2 (A:) Pelle death domain {Drosophila melanogaster
          [TaxId: 7227]}
          Length = 52

 Score = 24.0 bits (52), Expect = 2.6
 Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 38 RSATPADVYRLILGQSVDHGSQSALMLMIEGKLMYGMLFSLKSFVS 83
          R  + ++ +  I G   +H  Q+   L  + KL   M   +K +VS
Sbjct: 1  RGRSASNEFLNIWGGQYNHTVQTLFALFKKLKLHNAMRL-IKDYVS 45


>d1owla1 a.99.1.1 (A:205-475) C-terminal domain of DNA photolyase
           {Synechococcus elongatus [TaxId: 32046]}
          Length = 271

 Score = 25.0 bits (53), Expect = 4.3
 Identities = 5/28 (17%), Positives = 14/28 (50%)

Query: 12  HPQEYHHPKQEYHPKQEYPKPLIGYDRS 39
           HP++    +     ++ YP P++ ++  
Sbjct: 229 HPKDLISGEITPIERRGYPAPIVNHNLR 256


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.134    0.389 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 470,346
Number of extensions: 18255
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 4
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (22.5 bits)