BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2731
(537 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GW6|A Chain A, Structure Of Leukotriene A4 Hydrolase D375n Mutant
Length = 610
Score = 289 bits (739), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 176/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 189 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 248
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 249 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 278
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 279 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 326
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V N +
Sbjct: 327 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPNVAY 378
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 379 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 429
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 430 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 488
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 489 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 548
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 549 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 608
Query: 523 L 523
+
Sbjct: 609 V 609
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 403 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 460
>pdb|3U9W|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Sc57461a
Length = 608
Score = 287 bits (735), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 187 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 246
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 247 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 276
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 277 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 324
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 325 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 376
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 377 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 427
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 428 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 486
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 487 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 546
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 547 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 606
Query: 523 L 523
+
Sbjct: 607 V 607
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 401 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 458
>pdb|1HS6|A Chain A, Structure Of Leukotriene A4 Hydrolase Complexed With
Bestatin.
pdb|2VJ8|A Chain A, Complex Of Human Leukotriene A4 Hydrolase With A
Hydroxamic Acid Inhibitor
pdb|3FTS|A Chain A, Leukotriene A4 Hydrolase In Complex With Resveratrol
pdb|3FTU|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol
pdb|3FTV|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment N-
(Pyridin-3-Ylmethyl)aniline
pdb|3FTW|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragments N-
(Pyridin-3-Ylmethyl)aniline And Acetate
pdb|3FTX|A Chain A, Leukotriene A4 Hydrolase In Complex With
Dihydroresveratrol And Bestatin
pdb|3FTY|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 3-
(Benzyloxy)pyridin-2-Amine
pdb|3FU0|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(4-
Fluorobenzoyl)pyridine
pdb|3FU3|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 4-(2-
Amino-1,3-Thiazol-4-Yl)phenol
pdb|3FU5|A Chain A, Leukotriene A4 Hydrolase In Complex With (5-Thiophen-2-
Ylthiophen-2-Yl)methylamine
pdb|3FU6|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment (4-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUD|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Methyl-1-(2-
Thiophen-2-Ylphenyl)methanamine
pdb|3FUE|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Chloroindole And Bestatin
pdb|3FUF|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Fluoroindole And Bestatin
pdb|3FUH|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment 5-
Hydroxyindole And Bestatin
pdb|3FUI|A Chain A, Leukotriene A4 Hydrolase In Complex With N-Benzyl-4-[(2r)-
Pyrrolidin-2-Ylmethoxy]aniline
pdb|3FUJ|A Chain A, Leukotriene A4 Hydrolase In Complex With
5-[2-(1h-Pyrrol-1- Yl)ethoxy]-1h-Indole
pdb|3FUK|A Chain A, Leukotriene A4 Hydrolase In Complex With 1-[2-(1h-Indol-5-
Yloxy)ethyl]piperidine-4-Carboxylic Acid
pdb|3FUM|A Chain A, Leukotriene A4 Hydrolase In Complex With
(R)-Pyridin-4-Yl[4-
(2-Pyrrolidin-1-Ylethoxy)phenyl]methanol
pdb|3FUN|A Chain A, Leukotriene A4 Hydrolase In Complex With {4-[(2r)-
Pyrrolidin-2-Ylmethoxy]phenyl}(4-Thiophen-3-Ylphenyl)
Methanone
pdb|3FH5|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
(2r)-2-[(4- Benzylphenoxy)methyl]pyrrolidine.
pdb|3FH7|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor
4-[(2s)-2-{[4-(4-
Chlorophenoxy)phenoxy]methyl}pyrrolidin-1-Yl]butanoate.
pdb|3FH8|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor 1-[2-(4-
Benzylphenoxy)ethyl]pyrrolidine.
pdb|3FHE|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor N-[3-(4-
Benzylphenoxy)propyl]-N-Methyl-Beta-Alanine.
pdb|3FTZ|A Chain A, Leukotriene A4 Hydrolase In Complex With Fragment
2-(pyridin-3- Ylmethoxy)aniline
pdb|3FUL|A Chain A, Leukotriene A4 Hydrolase In Complex With
Pyridin-4-Yl[4-(2-Pyrrolidin-
1-Ylethoxy)phenyl]methanone
pdb|4DPR|A Chain A, Structure Of Human Leukotriene A4 Hydrolase In Complex
With Inhibitor Captopril
Length = 611
Score = 287 bits (735), Expect = 9e-78, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 190 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 249
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 250 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 279
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 280 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 327
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 328 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 379
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 380 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 430
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 431 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 489
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 490 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 549
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 550 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 609
Query: 523 L 523
+
Sbjct: 610 V 610
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 404 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 461
>pdb|2R59|A Chain A, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3041
pdb|3B7R|L Chain L, Leukotriene A4 Hydrolase Complexed With Inhibitor Rb3040
pdb|3B7U|X Chain X, Leukotriene A4 Hydrolase Complexed With Kelatorphan
Length = 616
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 195 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 254
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 255 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 284
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 285 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 332
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 333 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 384
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 385 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 435
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 436 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 494
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 495 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 554
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 555 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 614
Query: 523 L 523
+
Sbjct: 615 V 615
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 409 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 466
>pdb|3CHO|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 2-Amino-N-[4-(Phenylmethoxy)phenyl]-Acetamide
pdb|3CHP|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (3s)-3-Amino-4-Oxo-4-[(4-Phenylmethoxyphenyl)
Amino]butanoic Acid
pdb|3CHQ|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With N5-[4-(Phenylmethoxy)phenyl]-L-Glutamine
pdb|3CHR|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With 4-Amino-N-[4-(Phenylmethoxy)phenyl]-Butanamide
pdb|3CHS|A Chain A, Crystal Structure Of Leukotriene A4 Hydrolase In Complex
With (2s)-2-Amino-5-[[4-[(2s)-2-Hydroxy-2-Phenyl-
Ethoxy]phenyl]amino]-5-Oxo-Pentanoic Acid
Length = 610
Score = 287 bits (735), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 175/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 189 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 248
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 249 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 278
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 279 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 326
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 327 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 378
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 379 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 429
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 430 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 488
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 489 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 548
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 549 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 608
Query: 523 L 523
+
Sbjct: 609 V 609
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 403 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 460
>pdb|3B7S|A Chain A, [e296q]lta4h In Complex With Rsr Substrate
pdb|3B7T|A Chain A, [e296q]lta4h In Complex With Arg-Ala-Arg Substrate
Length = 616
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 195 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 254
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 255 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 284
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AH+ISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 285 TPT------------LLAGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLER 332
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 333 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 384
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 385 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 435
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 436 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 494
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 495 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 554
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 555 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 614
Query: 523 L 523
+
Sbjct: 615 V 615
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 409 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 466
>pdb|1H19|A Chain A, Structure Of [e271q] Leukotriene A4 Hydrolase
Length = 611
Score = 286 bits (732), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 253/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 190 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 249
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGM+NP C L
Sbjct: 250 GPYVWGQYDLLVLPPSFPYGGMQNP--------C----------------------LTFV 279
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 280 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 327
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 328 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 379
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 380 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 430
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 431 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 489
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 490 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 549
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QGRMK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 550 DAIPLALKMATEQGRMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 609
Query: 523 L 523
+
Sbjct: 610 V 610
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 404 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 461
>pdb|1SQM|A Chain A, Structure Of [r563a] Leukotriene A4 Hydrolase
Length = 610
Score = 285 bits (728), Expect = 6e-77, Method: Compositional matrix adjust.
Identities = 174/481 (36%), Positives = 252/481 (52%), Gaps = 75/481 (15%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 189 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 248
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP C L
Sbjct: 249 GPYVWGQYDLLVLPPSFPYGGMENP--------C----------------------LTFV 278
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AHEISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 279 TPT------------LLAGDKSLSNVIAHEISHSWTGNLVTNKTWDHFWLNEGHTVYLER 326
Query: 238 KITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLV------TNRNF 291
I GRL GE RHF+AL G +L+ +V +H +T +V + +
Sbjct: 327 HICGRLFGEKFRHFNALGGWGELQN--------SVKTFGETHPFTKLVVDLTDIDPDVAY 378
Query: 292 EHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQK 351
+GF + + +L G E L + S T W DF
Sbjct: 379 SSVPYEKGFALLFYLE---QLLGGPEIFLGFLKAYVEKFSYKSITTDDWK------DFLY 429
Query: 352 GRHYQCKIERLKCGSAILFIYG---------YDTSLQDVCNDLANRWISWNHTKETPFSK 402
+++ K++ L ++Y YD +L + C L+ RWI+ F+
Sbjct: 430 S-YFKDKVDVLNQVDWNAWLYSPGLPPIKPNYDMTLTNACIALSQRWITAKEDDLNSFNA 488
Query: 403 QDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWK 462
DL + Q EFLA L + L +K +Q+VY FN + N EIRFRWL+LC++++W+
Sbjct: 489 TDLKDLSSHQLNEFLAQTLQRAPLPLGHIKRMQEVYNFNAINNSEIRFRWLRLCIQSKWE 548
Query: 463 EQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLK 522
+ +P + M T QG MK+ RPL+++L A++ + A+ T+++H+ M VTA + KDLK
Sbjct: 549 DAIPLALKMATEQGAMKFTRPLFKDLAAFDKSHDQAVRTYQEHKASMHPVTAMLVGKDLK 608
Query: 523 L 523
+
Sbjct: 609 V 609
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKY 58
F +LK Y+ +F+ +SI TD++K L S+F K ++ NQ++W+ WL + G+PP P Y
Sbjct: 403 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNY 460
>pdb|2XQ0|A Chain A, Structure Of Yeast Lta4 Hydrolase In Complex With Bestatin
Length = 632
Score = 185 bits (469), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 151/497 (30%), Positives = 237/497 (47%), Gaps = 89/497 (17%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEF-NETEKFLSTAEEI 116
Y F Q + +P+YL+ I G+L+S I R +V++EP +K+ EF N+ EKF+ TAE+I
Sbjct: 194 YRFEQKVPIPAYLIGIASGDLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKI 253
Query: 117 CGTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y WG YD+++ S+P+GGME+P N T + P
Sbjct: 254 IFEYEWGTYDILVNVDSYPYGGMESP-------------------NMTFATP-------- 286
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
+LA D S V+AHE++HSW+GNLVTN ++ HFWLNEG+T+++E
Sbjct: 287 ---------------TLLAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVTNRN----FE 292
R+I G + GE RHF AL G DL+ S+ ++ E + NL N + F
Sbjct: 332 RRIIGAIHGEPTRHFSALIGWSDLQ-----NSIDSMKDPERFSTLVQNLNDNTDPDDAFS 386
Query: 293 HFWLNEGFTMFVERKITGRLRGEAE-----RHFDALSGLKDLK--QAVSSTGPLWDSKRN 345
+GF + + L G+AE RH+ K L Q + + + K+
Sbjct: 387 TVPYEKGFNLLFHLETI--LGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKE 444
Query: 346 ALDFQKGRHYQCKIERLKCGSAILFIYGYDTSLQDVCNDLANRWISW-NHTKET-----P 399
LD ++ + + FI T+L D LA++W+ H K T
Sbjct: 445 ILD---SVDWETWLYKPGMPPRPHFI----TALADNVYQLADKWVEMAQHLKTTEDFRSE 497
Query: 400 FSKQDLAAFTPGQKIEFLAILLDK-------EMYDLPKV----KSLQDVYRFNGVR--NC 446
F+ D+ F Q + FL L + +D K ++L D+Y+ N V+ N
Sbjct: 498 FNAIDIKDFNSNQLVLFLETLTQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQNA 557
Query: 447 EIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHR 506
E+ F+ K + A+ +E+ H+ D + + GRMK+VRP YR L + + R+ A+ TF + +
Sbjct: 558 EVVFKMFKFQIFAKLQEEYKHLADWLGTVGRMKFVRPGYRLLNSVD--RRLALATFDKFK 615
Query: 507 KQMMYVTAYTLAKDLKL 523
+ + +DLKL
Sbjct: 616 DTYHPICKALVKQDLKL 632
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 DFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPP 53
+F+P+++ Y +FA +S+DT F L + K EI + ++W+ WL GMPP
Sbjct: 409 EFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP 462
>pdb|2XPY|A Chain A, Structure Of Native Leukotriene A4 Hydrolase From
Saccharomyces Cerevisiae
pdb|2XPZ|A Chain A, Structure Of Native Yeast Lta4 Hydrolase
Length = 632
Score = 181 bits (460), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 149/497 (29%), Positives = 236/497 (47%), Gaps = 89/497 (17%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEF-NETEKFLSTAEEI 116
Y F Q + +P+YL+ I G+L+S I R +V++EP +K+ EF N+ EKF+ TAE+I
Sbjct: 194 YRFEQKVPIPAYLIGIASGDLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKI 253
Query: 117 CGTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y WG YD+++ S+P+GGME+P N T + P
Sbjct: 254 IFEYEWGTYDILVNVDSYPYGGMESP-------------------NMTFATP-------- 286
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
++A D S V+AHE++HSW+GNLVTN ++ HFWLNEG+T+++E
Sbjct: 287 ---------------TLIAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVTNRN----FE 292
R+I G + GE RHF AL G DL+ S+ ++ E + NL N + F
Sbjct: 332 RRIIGAIHGEPTRHFSALIGWSDLQ-----NSIDSMKDPERFSTLVQNLNDNTDPDDAFS 386
Query: 293 HFWLNEGFTMFVERKITGRLRGEAE-----RHFDALSGLKDLK--QAVSSTGPLWDSKRN 345
+GF + + L G+AE RH+ K L Q + + + K+
Sbjct: 387 TVPYEKGFNLLFHLETI--LGGKAEFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKE 444
Query: 346 ALDFQKGRHYQCKIERLKCGSAILFIYGYDTSLQDVCNDLANRWISW-NHTKET-----P 399
LD ++ + + FI T+L D LA++W+ H K T
Sbjct: 445 ILD---SVDWETWLYKPGMPPRPHFI----TALADNVYQLADKWVEMAQHLKTTEDFRSE 497
Query: 400 FSKQDLAAFTPGQKIEFLAILLDK-------EMYDLPKV----KSLQDVYRFNGVR--NC 446
F+ D+ F Q + FL L + +D K ++L D+Y+ N V+ N
Sbjct: 498 FNAIDIKDFNSNQLVLFLETLTQNGHSNKKPKDFDWAKFPVASRALLDIYQDNIVKSQNA 557
Query: 447 EIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFKQHR 506
E+ F+ K + A+ +E+ H+ D + + GRMK+VRP YR L + + R+ A+ TF + +
Sbjct: 558 EVVFKMFKFQIFAKLQEEYKHLADWLGTVGRMKFVRPGYRLLNSVD--RRLALATFDKFK 615
Query: 507 KQMMYVTAYTLAKDLKL 523
+ + +DL L
Sbjct: 616 DTYHPICKALVKQDLGL 632
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 33/54 (61%), Gaps = 1/54 (1%)
Query: 1 DFEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPP 53
+F+P+++ Y +FA +S+DT F L + K EI + ++W+ WL GMPP
Sbjct: 409 EFDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP 462
>pdb|3CIA|A Chain A, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|B Chain B, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|C Chain C, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
pdb|3CIA|D Chain D, Crystal Structure Of Cold-Aminopeptidase From Colwellia
Psychrerythraea
Length = 605
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 72/203 (35%), Positives = 107/203 (52%), Gaps = 42/203 (20%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F P +P YL+AI VG+L +S + +++E ++ A EF++T+ + AE++
Sbjct: 194 YFFSMPQAIPPYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQMY 253
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G Y WG YDL+MLPPSFPFGGMENP
Sbjct: 254 GKYRWGRYDLLMLPPSFPFGGMENP----------------------------------- 278
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
++ F+ + ++AGD SL ++AHE++HSW+GNLVTN ++ WLNEGFT +VE
Sbjct: 279 ----RLSFITPT---VVAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVEN 331
Query: 238 KITGRLRGEAERHFDALSGLKDL 260
+I + G + G +DL
Sbjct: 332 RIMEAVFGTDRAVMEQALGAQDL 354
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 76/303 (25%), Positives = 127/303 (41%), Gaps = 62/303 (20%)
Query: 264 AGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDAL 323
AGD SL ++AHE++HSW+GNLVTN ++ WLNEGFT +VE +I + G +
Sbjct: 289 AGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQA 348
Query: 324 SGLKDLKQAV----SSTGPLW--------DSKRNALDFQKGRHYQCKIERLKCG----SA 367
G +DL + +S L+ D + + + KG+ + +E K G A
Sbjct: 349 LGAQDLNAEILELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEE-KFGRERFDA 407
Query: 368 ILFIYGYDTSLQDVCNDLANRWISWNHTKETP-----------FSKQDLAAFTPGQKIEF 416
+ Y + Q + D +++ N T + P K L ++ P Q
Sbjct: 408 FVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAP-QPTSN 466
Query: 417 LAILLDKEM---------------------------------YDLPKVKSLQDVYRFNGV 443
++DK++ D ++ +L +
Sbjct: 467 AFKVIDKQINQLVTDELTLEQLPTAQWTLHEWLHFINNLPVDLDHQRMVNLDKAFDLTNS 526
Query: 444 RNCEIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAIDTFK 503
N EI W L ++A +KE P + + S GR K + PLY+EL +++ A++ +K
Sbjct: 527 SNAEIAHAWYLLSVRADYKEVYPAMAKYLKSIGRRKLIVPLYKELAKNAESKAWAVEVYK 586
Query: 504 QHR 506
Q R
Sbjct: 587 QAR 589
Score = 33.1 bits (74), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 2 FEPWLKKYLAEFALQSIDTDNF----KAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPK 57
F+ ++ +Y A QS+ TDNF KA+LT + + N+I + W+ G+P + P+
Sbjct: 405 FDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEI--NEWIFKAGLPSYAPQ 462
>pdb|3MDJ|A Chain A, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|B Chain B, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
pdb|3MDJ|C Chain C, Er Aminopeptidase, Erap1, Bound To The Zinc Aminopeptidase
Inhibitor, Bestatin
Length = 921
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 95/240 (39%), Gaps = 43/240 (17%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYSFY 61
FEP A A D FKA + +P I + + + + + F
Sbjct: 146 FEP----TAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFD 201
Query: 62 QPIKVPSYLVAIVVGNLASY-KISE---RCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
+K+ +YLVA ++ + S KI++ + SV++ P+ + +A + L E+
Sbjct: 202 VTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYF 261
Query: 118 GT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y DL +P F G MEN T+ ++ + ++ KS SK D+
Sbjct: 262 SIPYPLPKQDLAAIP-DFQSGAMENWGLTTYRESA-------LLFDAEKSSASSKLDITM 313
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 314 --------------------------TVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 347
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 263 AAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
A+ + VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 305 ASSKLDITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 347
>pdb|3QNF|A Chain A, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|B Chain B, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
pdb|3QNF|C Chain C, Crystal Structure Of The Open State Of Human Endoplasmic
Reticulum Aminopeptidase 1 Erap1
Length = 954
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYSFY 61
FEP A A D FKA + +P I + + + + + F
Sbjct: 188 FEP----TAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFD 243
Query: 62 QPIKVPSYLVAIVVGNLASY-KISE---RCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
+K+ +YLVA ++ + S KI++ + SV++ P+ + +A + L E+
Sbjct: 244 VTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYF 303
Query: 118 GT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y DL +P F G MEN W T + ++ A
Sbjct: 304 SIPYPLPKQDLAAIP-DFQSGAMEN-------------------WGLT-----TYRESAL 338
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
+K + +SS + + VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 339 LFDAEK----SSASSKL-----GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 389
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 263 AAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
A+ + VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 347 ASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 389
>pdb|2YD0|A Chain A, Crystal Structure Of The Soluble Domain Of Human
Endoplasmic Reticulum Aminopeptidase 1 Erap1
Length = 897
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 96/240 (40%), Gaps = 43/240 (17%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYSFY 61
FEP A A D FKA + +P I + + + + + F
Sbjct: 137 FEP----TAARMAFPCFDEPAFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFD 192
Query: 62 QPIKVPSYLVAIVVGNLASY-KISE---RCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
+K+ +YLVA ++ + S KI++ + SV++ P+ + +A + L E+
Sbjct: 193 VTVKMSTYLVAFIISDFESVSKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYF 252
Query: 118 GT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y DL +P F G MEN W T + ++ A
Sbjct: 253 SIPYPLPKQDLAAIP-DFQSGAMEN-------------------WGLT-----TYRESAL 287
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
+K + +SS + + VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 288 LFDAEK----SSASSKL-----GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 338
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 263 AAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
A+ + VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 296 ASSKLGITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFME 338
>pdb|4FYQ|A Chain A, Human Aminopeptidase N (Cd13)
pdb|4FYR|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Bestatin
pdb|4FYS|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Angiotensin
Iv
pdb|4FYT|A Chain A, Human Aminopeptidase N (Cd13) In Complex With Amastatin
Length = 903
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 251 FDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
FD LS K+ + V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 305 FDPLSSSSSNKE-----RVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVE 354
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 4/79 (5%)
Query: 200 LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKD 259
+ V+AHE++H W GNLVT + WLNEGF +VE G E + L L D
Sbjct: 318 VVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVE--YLGADYAEPTWNLKDLMVLND 375
Query: 260 LKQAAGDGSLAAVVAHEIS 278
+ + +LA+ +H +S
Sbjct: 376 VYRVMAVDALAS--SHPLS 392
>pdb|3SE6|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
pdb|3SE6|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2
Length = 967
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 33/85 (38%), Positives = 42/85 (49%), Gaps = 19/85 (22%)
Query: 168 PFSKQDLAA---FTPG------------QKIEFLAKSSSYILAGDGS-LAAVVAHEISHS 211
P SK DL A F PG + F K+SS A D + V+AHE++H
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSS---ASDKLWVTRVIAHELAHQ 375
Query: 212 WTGNLVTNRNFEHFWLNEGFTMFVE 236
W GNLVT + WLNEGF ++E
Sbjct: 376 WFGNLVTMEWWNDIWLNEGFAKYME 400
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%)
Query: 272 VVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
V+AHE++H W GNLVT + WLNEGF ++E
Sbjct: 367 VIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYME 400
>pdb|4F5C|A Chain A, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
pdb|4F5C|B Chain B, Crystal Structure Of The Spike Receptor Binding Domain Of
A Porcine Respiratory Coronavirus In Complex With The
Pig Aminopeptidase N Ectodomain
Length = 959
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLR 244
F +SSS ++ + V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 346 FDPQSSS--ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYL------ 397
Query: 245 GEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWT 282
H + LKDL + AV A SH T
Sbjct: 398 --GADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLT 433
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 269 LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
+ V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 359 VVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVE 395
>pdb|4H5H|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Cleaved Poly-Alanine
pdb|4HOM|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Substance P
Length = 908
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLR 244
F +SSS ++ + V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 302 FDPQSSS--ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYL------ 353
Query: 245 GEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWT 282
H + LKDL + AV A SH T
Sbjct: 354 --GADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLT 389
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 269 LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
+ V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 315 VVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVE 351
>pdb|4FKE|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N
pdb|4FKH|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Alanine
pdb|4FKK|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Bestatin
Length = 909
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLR 244
F +SSS ++ + V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 303 FDPQSSS--ISNKERVVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVEYL------ 354
Query: 245 GEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWT 282
H + LKDL + AV A SH T
Sbjct: 355 --GADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLT 390
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 19/37 (51%), Positives = 25/37 (67%)
Query: 269 LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
+ V+AHE++H W GNLVT + WLNEGF +VE
Sbjct: 316 VVTVIAHELAHQWFGNLVTLAWWNDLWLNEGFASYVE 352
>pdb|4HOL|A Chain A, Crystal Structure Of Porcine Aminopeptidase-N Complexed
With Poly- Alanine
Length = 908
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 45/98 (45%), Gaps = 10/98 (10%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLR 244
F +SSS ++ + V+AH+++H W GNLVT + WLNEGF +VE
Sbjct: 302 FDPQSSS--ISNKERVVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVEYL------ 353
Query: 245 GEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWT 282
H + LKDL + AV A SH T
Sbjct: 354 --GADHAEPTWNLKDLIVPGDVYRVMAVDALASSHPLT 389
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 25/37 (67%)
Query: 269 LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
+ V+AH+++H W GNLVT + WLNEGF +VE
Sbjct: 315 VVTVIAHQLAHQWFGNLVTLAWWNDLWLNEGFASYVE 351
>pdb|3Q7J|A Chain A, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
pdb|3Q7J|B Chain B, Engineered Thermoplasma Acidophilum F3 Factor Mimics Human
Aminopeptidase N (Apn) As A Target For Anticancer Drug
Development
Length = 780
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 201 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 243
A V+AHEI+H W G+LVT + + WLNE F F+ K L
Sbjct: 260 ATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 312
A V+AHEI+H W G+LVT + + WLNE F F+ K L
Sbjct: 260 ATVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302
>pdb|4E36|A Chain A, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
pdb|4E36|B Chain B, Crystal Structure Of The Human Endoplasmic Reticulum
Aminopeptidase 2 Variant N392k
Length = 967
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/85 (37%), Positives = 41/85 (48%), Gaps = 19/85 (22%)
Query: 168 PFSKQDLAA---FTPG------------QKIEFLAKSSSYILAGDGS-LAAVVAHEISHS 211
P SK DL A F PG + F K+SS A D + V+AHE++H
Sbjct: 319 PLSKLDLIAIPDFAPGAMENWGLITYRETSLLFDPKTSS---ASDKLWVTRVIAHELAHQ 375
Query: 212 WTGNLVTNRNFEHFWLNEGFTMFVE 236
W GNLVT + WL EGF ++E
Sbjct: 376 WFGNLVTMEWWNDIWLKEGFAKYME 400
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 23/34 (67%)
Query: 272 VVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 305
V+AHE++H W GNLVT + WL EGF ++E
Sbjct: 367 VIAHELAHQWFGNLVTMEWWNDIWLKEGFAKYME 400
>pdb|1Z1W|A Chain A, Crystal Structures Of The Tricorn Interacting Facor F3
From Thermoplasma Acidophilum, A Zinc Aminopeptidase In
Three Different Conformations
pdb|1Z5H|A Chain A, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
pdb|1Z5H|B Chain B, Crystal Structures Of The Tricorn Interacting Factor F3
From Thermoplasma Acidophilum
Length = 780
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 201 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 243
A V+AHEI+H W G+LVT + + WLNE F F+ K L
Sbjct: 260 ANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 312
A V+AHEI+H W G+LVT + + WLNE F F+ K L
Sbjct: 260 ANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302
>pdb|2GTQ|A Chain A, Crystal Structure Of Aminopeptidase N From Human Pathogen
Neisseria Meningitidis
Length = 867
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 268 SLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLK 327
+ +VV HE H+WTGN VT R++ L EG T+F +++ +G A R + + L+
Sbjct: 286 GIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLR 345
Query: 328 DLKQAVSSTGPLWDSKRNA 346
Q GP R A
Sbjct: 346 Q-HQFPEDAGPTAHPVRPA 363
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 199 SLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLK 258
+ +VV HE H+WTGN VT R++ L EG T+F +++ +G A R + + L+
Sbjct: 286 GIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIENIRLLR 345
>pdb|2DQ6|A Chain A, Crystal Structure Of Aminopeptidase N From Escherichia
Coli
pdb|2DQM|A Chain A, Crystal Structure Of Aminopeptidase N Complexed With
Bestatin
pdb|2ZXG|A Chain A, Aminopeptidase N Complexed With The Aminophosphinic
Inhibitor Of Pl250, A Transition State Analogue
Length = 870
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 189 SSSYILAGDGS--------LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKIT 240
+S Y+LA + + V+ HE H+WTGN VT R++ L EG T+F +++ +
Sbjct: 272 NSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFS 331
Query: 241 GRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEI 277
L A + + ++ L+ A A+ +AH I
Sbjct: 332 SDLGSRAVNRINNVRTMRGLQFAED----ASPMAHPI 364
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 272 VVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQ 331
V+ HE H+WTGN VT R++ L EG T+F +++ + L A + + ++ L+
Sbjct: 294 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQF 353
Query: 332 A 332
A
Sbjct: 354 A 354
>pdb|2HPO|A Chain A, Structure Of Aminopeptidase N From E. Coli Suggests A
Compartmentalized, Gated Active Site
pdb|2HPT|A Chain A, Crystal Structure Of E. Coli Pepn (Aminopeptidase N)in
Complex With Bestatin
pdb|3KED|A Chain A, Crystal Structure Of Aminopeptidase N In Complex With 2,4-
Diaminobutyric Acid
pdb|3B2P|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Arginine
pdb|3B2X|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Lysine
pdb|3B34|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Phenylalanine
pdb|3B37|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tyrosine
pdb|3B3B|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With Tryptophan
pdb|3QJX|A Chain A, Crystal Structure Of E. Coli Aminopeptidase N In Complex
With L-Serine
Length = 891
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 189 SSSYILAGDGS--------LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKIT 240
+S Y+LA + + V+ HE H+WTGN VT R++ L EG T+F +++ +
Sbjct: 293 NSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFS 352
Query: 241 GRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEI 277
L A + + ++ L+ A A+ +AH I
Sbjct: 353 SDLGSRAVNRINNVRTMRGLQFAED----ASPMAHPI 385
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 272 VVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQ 331
V+ HE H+WTGN VT R++ L EG T+F +++ + L A + + ++ L+
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQF 374
Query: 332 A 332
A
Sbjct: 375 A 375
>pdb|3PUU|A Chain A, Crystal Structure Of Glu121gln Mutant Of E. Coli
Aminopeptidase N
Length = 891
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 48/97 (49%), Gaps = 12/97 (12%)
Query: 189 SSSYILAGDGS--------LAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKIT 240
+S Y+LA + + V+ HE H+WTGN VT R++ L EG T+F +++ +
Sbjct: 293 NSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFS 352
Query: 241 GRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEI 277
L A + + ++ L+ A A+ +AH I
Sbjct: 353 SDLGSRAVNRINNVRTMRGLQFAED----ASPMAHPI 385
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 34/61 (55%)
Query: 272 VVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQ 331
V+ HE H+WTGN VT R++ L EG T+F +++ + L A + + ++ L+
Sbjct: 315 VIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMRGLQF 374
Query: 332 A 332
A
Sbjct: 375 A 375
>pdb|3Q43|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 15
pdb|3Q44|A Chain A, X-Ray Crystal Structure Of Pfa-M1 Bound To Bestatin
Derivative 16
Length = 891
Score = 35.8 bits (81), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 240 TGRLRGEAERHFDALSGLKDLKQAAGDGSLA---AVVAHEISHSWTGNLVTNRNFEHFWL 296
G + + F+A S L K+ + D S A VV HE H +TGN VT R++ L
Sbjct: 265 VGAMENKGLNIFNANSLLAS-KKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTL 323
Query: 297 NEGFTMFVE--------RKITGRLRGEAERHFDALSGLKDLKQAVSSTGPL 339
EG T+ E + +T RL H D L ++ L+ + + P+
Sbjct: 324 KEGLTVHRENLFSEEMTKTVTTRL-----SHVDLLRSVQFLEDSSPLSHPI 369
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE-------- 236
LA + I + VV HE H +TGN VT R++ L EG T+ E
Sbjct: 281 LLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMT 340
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAA 264
+ +T RL H D L ++ L+ ++
Sbjct: 341 KTVTTRL-----SHVDLLRSVQFLEDSS 363
>pdb|3EBG|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
pdb|3EBH|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With Bestatin
Length = 889
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 240 TGRLRGEAERHFDALSGLKDLKQAAGDGSLA---AVVAHEISHSWTGNLVTNRNFEHFWL 296
G + + F+A S L K+ + D S A VV HE H +TGN VT R++ L
Sbjct: 264 VGAMENKGLNIFNANSLLAS-KKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTL 322
Query: 297 NEGFTMFVE--------RKITGRLRGEAERHFDALSGLKDLKQAVSSTGPL 339
EG T+ E + +T RL H D L ++ L+ + + P+
Sbjct: 323 KEGLTVHRENLFSEEMTKTVTTRL-----SHVDLLRSVQFLEDSSPLSHPI 368
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE-------- 236
LA + I + VV HE H +TGN VT R++ L EG T+ E
Sbjct: 280 LLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMT 339
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAA 264
+ +T RL H D L ++ L+ ++
Sbjct: 340 KTVTTRL-----SHVDLLRSVQFLEDSS 362
>pdb|3EBI|A Chain A, Structure Of The M1 Alanylaminopeptidase From Malaria
Complexed With The Phosphinate Dipeptide Analog
Length = 890
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 240 TGRLRGEAERHFDALSGLKDLKQAAGDGSLA---AVVAHEISHSWTGNLVTNRNFEHFWL 296
G + + F+A S L K+ + D S A VV HE H +TGN VT R++ L
Sbjct: 265 VGAMENKGLNIFNANSLLAS-KKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTL 323
Query: 297 NEGFTMFVE--------RKITGRLRGEAERHFDALSGLKDLKQAVSSTGPL 339
EG T+ E + +T RL H D L ++ L+ + + P+
Sbjct: 324 KEGLTVHRENLFSEEMTKTVTTRL-----SHVDLLRSVQFLEDSSPLSHPI 369
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE-------- 236
LA + I + VV HE H +TGN VT R++ L EG T+ E
Sbjct: 281 LLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMT 340
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAA 264
+ +T RL H D L ++ L+ ++
Sbjct: 341 KTVTTRL-----SHVDLLRSVQFLEDSS 363
>pdb|3T8V|A Chain A, A Bestatin-Based Chemical Biology Strategy Reveals
Distinct Roles For Malaria M1- And M17-Family
Aminopeptidases
Length = 895
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 50/111 (45%), Gaps = 17/111 (15%)
Query: 240 TGRLRGEAERHFDALSGLKDLKQAAGDGSLA---AVVAHEISHSWTGNLVTNRNFEHFWL 296
G + + F+A S L K+ + D S A VV HE H +TGN VT R++ L
Sbjct: 264 VGAMENKGLNIFNANSLLAS-KKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTL 322
Query: 297 NEGFTMFVE--------RKITGRLRGEAERHFDALSGLKDLKQAVSSTGPL 339
EG T+ E + +T RL H D L ++ L+ + + P+
Sbjct: 323 KEGLTVHRENLFSEEMTKTVTTRL-----SHVDLLRSVQFLEDSSPLSHPI 368
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 13/88 (14%)
Query: 185 FLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE-------- 236
LA + I + VV HE H +TGN VT R++ L EG T+ E
Sbjct: 280 LLASKKNSIDFSYARILTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMT 339
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAA 264
+ +T RL H D L ++ L+ ++
Sbjct: 340 KTVTTRL-----SHVDLLRSVQFLEDSS 362
>pdb|3SZT|A Chain A, Quorum Sensing Control Repressor, Qscr, Bound To
N-3-Oxo-Dodecanoyl-L- Homoserine Lactone
pdb|3SZT|B Chain B, Quorum Sensing Control Repressor, Qscr, Bound To
N-3-Oxo-Dodecanoyl-L- Homoserine Lactone
Length = 237
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 4/88 (4%)
Query: 92 EPELVKEAADEFNETEKFLSTAEEICGTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVC 151
E E E E+F S EICG Y + + P FP + P L +
Sbjct: 4 EREGYLEILSRITTEEEFFSLVLEICGNYGFEFFSFGARAP-FP---LTAPKYHFLSNYP 59
Query: 152 NDLANRWISWNHTKSPPFSKQDLAAFTP 179
+ +R+IS ++T P + L +TP
Sbjct: 60 GEWKSRYISEDYTSIDPIVRHGLLEYTP 87
>pdb|3O3M|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3M|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase
pdb|3O3N|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3N|D Chain D, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
Its Substrate (R)-2-Hydroxyisocaproyl-Coa
pdb|3O3O|B Chain B, (R)-2-Hydroxyisocaproyl-Coa Dehydratase In Complex With
(R)-2- Hydroxyisocaproate
Length = 385
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 35/72 (48%), Gaps = 17/72 (23%)
Query: 455 LCLKARWKEQVPHV--IDMVTSQGR-----MKYVRPLY----REL-----YAWEDTR-QT 497
+CL WK VPH+ I +V Q R +KY+ Y REL Y E+ +
Sbjct: 103 ICLGQNWKSAVPHIKYISLVHPQNRKLEAGVKYLISEYKGVKRELEEICGYEIEEAKIHE 162
Query: 498 AIDTFKQHRKQM 509
+I+ + +HRK M
Sbjct: 163 SIEVYNEHRKTM 174
>pdb|1ZD8|A Chain A, Structure Of Human Adenylate Kinase 3 Like 1
Length = 227
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 420 LLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARW 461
LLD LP+ ++L Y+ + V N + F +K L ARW
Sbjct: 88 LLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 129
>pdb|2AK3|A Chain A, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
pdb|2AK3|B Chain B, The Three-Dimensional Structure Of The Complex Between
Mitochondrial Matrix Adenylate Kinase And Its Substrate
Amp At 1.85 Angstroms Resolution
Length = 226
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 420 LLDKEMYDLPKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARW 461
LLD LP+ ++L Y+ + V N + F +K L ARW
Sbjct: 87 LLDGFPRTLPQAEALDRAYQIDTVINLNVPFEVIKQRLTARW 128
>pdb|3V8U|A Chain A, The Crystal Structure Of Transferrin Binding Protein B
(Tbpb) From Neisseria Meningitidis Serogroup B
pdb|3V8U|B Chain B, The Crystal Structure Of Transferrin Binding Protein B
(Tbpb) From Neisseria Meningitidis Serogroup B
Length = 717
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 198 GSLAAVVAHEISHSWTGNL--VTNRNFEHFWLNEGFTMFVERKITGRL 243
GS +A++ S SW+GN T+ N F +N F ++KITG L
Sbjct: 574 GSWYGYIANDKSTSWSGNASNATSGNRAEFTVN-----FADKKITGTL 616
Score = 29.3 bits (64), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 7/48 (14%)
Query: 267 GSLAAVVAHEISHSWTGNL--VTNRNFEHFWLNEGFTMFVERKITGRL 312
GS +A++ S SW+GN T+ N F +N F ++KITG L
Sbjct: 574 GSWYGYIANDKSTSWSGNASNATSGNRAEFTVN-----FADKKITGTL 616
>pdb|1S7U|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7U|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7V|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7W|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|1S7X|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With Lcmv-
Derived Gp33 Index Peptide And Three Of Its Escape
Variants
pdb|3QUK|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUK|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4a)
pdb|3QUL|A Chain A, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|D Chain D, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|G Chain G, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3QUL|J Chain J, Crystal Structures Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand (Y4s)
pdb|3TBS|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBS|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex The With
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p,Y4a)
pdb|3TBT|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBT|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4s)
pdb|3TBV|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBV|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g,V3p,Y4a)
pdb|3TBW|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|C Chain C, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|E Chain E, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBW|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (A2g, V3p, Y4s)
pdb|3TBX|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With
Lcmv-Derived Gp33 Altered Peptide Ligand V3p
pdb|3TBY|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
pdb|3TBY|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex H-2db In Complex With The
Lcmv-Derived Gp33 Altered Peptide Ligand (V3p, Y4f)
Length = 338
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1LDP|H Chain H, Crystal Structure Of Murine Mhc Class I H-2ld With A
Mixture Of Bound Peptides
Length = 272
Score = 28.9 bits (63), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1LD9|A Chain A, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
pdb|1LD9|D Chain D, The Three-Dimensional Structure Of An H-2ld Peptide
Complex Explains The Unique Interaction Of Ld With
Beta2m And Peptide
Length = 268
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|4HV8|A Chain A, Crystal Structure Of H2db-h155a-npm6i
pdb|4HV8|C Chain C, Crystal Structure Of H2db-h155a-npm6i
Length = 281
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 168 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 207
>pdb|4HUX|A Chain A, Crystal Structure Of H2db-h155a-np
Length = 280
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1FG2|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|D Chain D, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|G Chain G, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1FG2|J Chain J, Crystal Structure Of The Lcmv Peptidic Epitope Gp33 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPF|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Gp276 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|1JPG|A Chain A, Crystal Structure Of The Lcmv Peptidic Epitope Np396 In
Complex With The Murine Class I Mhc Molecule H-2db
pdb|3FTG|A Chain A, Crystal Structure Of H2db In Complex With Np366-N3a
Variant Peptide From Influenza
pdb|4HUU|A Chain A, Crystal Structure Of H2db-npm6i
pdb|4HUU|D Chain D, Crystal Structure Of H2db-npm6i
pdb|4HUV|A Chain A, Crystal Structure Of H2db-npm6w
pdb|4HUV|D Chain D, Crystal Structure Of H2db-npm6w
pdb|4HUW|A Chain A, Crystal Structure Of H2db-npm6t
pdb|4HUW|C Chain C, Crystal Structure Of H2db-npm6t
pdb|4HUW|E Chain E, Crystal Structure Of H2db-npm6t
pdb|4HUW|G Chain G, Crystal Structure Of H2db-npm6t
Length = 281
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 168 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 207
>pdb|1N3N|A Chain A, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|C Chain C, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|E Chain E, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
pdb|1N3N|G Chain G, Crystal Structure Of A Mycobacterial Hsp60 Epitope With
The Murine Class I Mhc Molecule H-2db
Length = 280
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|2VE6|A Chain A, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|D Chain D, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|G Chain G, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
pdb|2VE6|J Chain J, Crystal Structure Of A Murine Mhc Class I H2-Db Molecule
In Complex With A Photocleavable Peptide
Length = 277
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1HOC|A Chain A, The Three-Dimensional Structure Of H-2db At 2.4 Angstroms
Resolution: Implications For Antigen-Determinant
Selection
Length = 272
Score = 28.5 bits (62), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1QLF|A Chain A, Mhc Class I H-2db Complexed With Glycopeptide K3g
pdb|1N5A|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1N5A|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Immunodominant Peptide Epitope Gp33
Derived From Lcmv
pdb|1WBX|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1WBY|A Chain A, Crystal Structures Of Murine Mhc Class I H-2 Db And Kb
Molecules In Complex With Ctl Epitopes From Influenza A
Virus: Implications For Tcr Repertoire Selection And
Immunodominance
pdb|1ZHB|A Chain A, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|D Chain D, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|G Chain G, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|1ZHB|J Chain J, Crystal Structure Of The Murine Class I Major
Histocompatibility Complex Of H-2db, B2-Microglobulin,
And A 9-Residue Peptide Derived From Rat Dopamine Beta-
Monooxigenase
pdb|2F74|A Chain A, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|2F74|D Chain D, Murine Mhc Class I H-2db In Complex With Human
B2-Microglobulin And Lcmv-Derived Immunodminant Peptide
Gp33
pdb|3CC5|A Chain A, H-2db Complex With Human Gp100
pdb|3CC5|D Chain D, H-2db Complex With Human Gp100
pdb|3CCH|A Chain A, H-2db Complex With Murine Gp100
pdb|3CCH|D Chain D, H-2db Complex With Murine Gp100
pdb|3CCH|G Chain G, H-2db Complex With Murine Gp100
pdb|3CCH|J Chain J, H-2db Complex With Murine Gp100
pdb|3CH1|A Chain A, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|D Chain D, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|G Chain G, Crystal Structure Of H-2db In Complex With Chimeric Gp100
pdb|3CH1|J Chain J, Crystal Structure Of H-2db In Complex With Chimeric Gp100
Length = 276
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1JUF|A Chain A, Structure Of Minor Histocompatibility Antigen Peptide,
H13b, Complexed To H2-Db
Length = 276
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|3NF4|A Chain A, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
pdb|3NF4|B Chain B, Crystal Structure Of Acyl-Coa Dehydrogenase From
Mycobacterium Thermoresistibile Bound To Flavin Adenine
Dinucleotide
Length = 387
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 7/48 (14%)
Query: 119 TYVWGVYD------LVMLPPSFPFGGMENPYDTSLQDVCNDLANRWIS 160
TY GV++ L+ LP +GG PY+ LQ V ++A RW S
Sbjct: 47 TYPEGVFEQLGAAGLLSLPQPEEWGGGGQPYEVYLQ-VLEEIAARWAS 93
>pdb|2CII|A Chain A, The Crystal Structure Of H-2db Complexed With A Partial
Peptide Epitope Suggests An Mhc Class I Assembly-
Intermediate
Length = 275
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
>pdb|1CE6|A Chain A, Mhc Class I H-2db Complexed With A Sendai Virus
Nucleoprotein Peptide
Length = 274
Score = 28.5 bits (62), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 5 WLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDL 44
WL +YL + TD+ KAH+T H K E+ W L
Sbjct: 167 WLHRYLKNGNATLLRTDSPKAHVTHHPRSKGEVTLRCWAL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.423
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,302,237
Number of Sequences: 62578
Number of extensions: 754701
Number of successful extensions: 1928
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1785
Number of HSP's gapped (non-prelim): 134
length of query: 537
length of database: 14,973,337
effective HSP length: 103
effective length of query: 434
effective length of database: 8,527,803
effective search space: 3701066502
effective search space used: 3701066502
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)