RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2731
(537 letters)
>3b7s_A Leukotriene A-4 hydrolase; transition state, analogue peptide,
hydrolysis, hydrolase, leukotriene biosynthesis,
metal-binding, metalloprotease; 1.47A {Homo sapiens}
SCOP: a.118.1.7 b.98.1.1 d.92.1.13 PDB: 3b7t_A 3b7r_L*
2r59_A* 3b7u_X* 3fun_A* 1hs6_A* 2vj8_A* 3fh7_A* 3fh8_A*
3fhe_A* 3fts_A* 3ftu_A* 3ftv_A* 3ftw_A* 3ftx_A* 3fty_A*
3ftz_A* 3fu0_A* 3fu3_A* 3fu5_A* ...
Length = 616
Score = 203 bits (518), Expect = 3e-58
Identities = 96/206 (46%), Positives = 124/206 (60%), Gaps = 42/206 (20%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEIC 117
Y F Q + +P YL+A+VVG L S +I R VWSE E V+++A EF+ETE L AE++
Sbjct: 195 YKFIQKVPIPCYLIALVVGALESRQIGPRTLVWSEKEQVEKSAYEFSETESMLKIAEDLG 254
Query: 118 GTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAF 177
G YVWG YDL++LPPSFP+GGMENP L
Sbjct: 255 GPYVWGQYDLLVLPPSFPYGGMENP------------------------------CLTFV 284
Query: 178 TPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVER 237
TP +LAGD SL+ V+AH+ISHSWTGNLVTN+ ++HFWLNEG T+++ER
Sbjct: 285 TP------------TLLAGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLER 332
Query: 238 KITGRLRGEAERHFDALSGLKDLKQA 263
I GRL GE RHF+AL G +L+ +
Sbjct: 333 HICGRLFGEKFRHFNALGGWGELQNS 358
Score = 161 bits (409), Expect = 4e-43
Identities = 59/150 (39%), Positives = 93/150 (62%)
Query: 374 YDTSLQDVCNDLANRWISWNHTKETPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKS 433
YD +L + C L+ RWI+ F+ DL + Q EFLA L + L +K
Sbjct: 466 YDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQTLQRAPLPLGHIKR 525
Query: 434 LQDVYRFNGVRNCEIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYRELYAWED 493
+Q+VY FN + N EIRFRWL+LC++++W++ +P + M T QGRMK+ RPL+++L A++
Sbjct: 526 MQEVYNFNAINNSEIRFRWLRLCIQSKWEDAIPLALKMATEQGRMKFTRPLFKDLAAFDK 585
Query: 494 TRQTAIDTFKQHRKQMMYVTAYTLAKDLKL 523
+ A+ T+++H+ M VTA + KDLK+
Sbjct: 586 SHDQAVRTYQEHKASMHPVTAMLVGKDLKV 615
Score = 107 bits (269), Expect = 7e-25
Identities = 45/75 (60%), Positives = 59/75 (78%)
Query: 264 AGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDAL 323
AGD SL+ V+AH+ISHSWTGNLVTN+ ++HFWLNEG T+++ER I GRL GE RHF+AL
Sbjct: 290 AGDKSLSNVIAHQISHSWTGNLVTNKTWDHFWLNEGHTVYLERHICGRLFGEKFRHFNAL 349
Query: 324 SGLKDLKQAVSSTGP 338
G +L+ +V + G
Sbjct: 350 GGWGELQNSVKTFGE 364
Score = 61.0 bits (148), Expect = 5e-10
Identities = 24/59 (40%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPE-INQIEWDLWLNTTGMPPHIPKYS 59
F +LK Y+ +F+ +SI TD++K L S+F K + +NQ++W+ WL + G+PP P Y
Sbjct: 409 FLGFLKAYVEKFSYKSITTDDWKDFLYSYFKDKVDVLNQVDWNAWLYSPGLPPIKPNYD 467
Score = 41.3 bits (97), Expect = 7e-04
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 143 YDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAFTPGQKIEFLAK 188
YD +L + C L+ RWI+ F+ DL + Q EFLA+
Sbjct: 466 YDMTLTNACIALSQRWITAKEDDLNSFNATDLKDLSSHQLNEFLAQ 511
>3cia_A Cold-active aminopeptidase; psychrohilic, hydrolase; 2.70A
{Colwellia psychrerythraea}
Length = 605
Score = 203 bits (517), Expect = 3e-58
Identities = 71/323 (21%), Positives = 113/323 (34%), Gaps = 70/323 (21%)
Query: 264 AGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDAL 323
AGD SL ++AHE++HSW+GNLVTN ++ WLNEGFT +VE +I + G +
Sbjct: 289 AGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVENRIMEAVFGTDRAVMEQA 348
Query: 324 SGLKDLKQAVSSTGPLWDS--------------------K--------RNAL---DFQKG 352
G +DL + K F
Sbjct: 349 LGAQDLNAEILELDASDTQLYIDLKGRDPDDAFSGVPYVKGQLFLMYLEEKFGRERFDAF 408
Query: 353 -RHYQCKIERLKCGSAI---LFIYGYDTSLQDVCNDLA----NRWI-------------- 390
Y + S Y N ++ N WI
Sbjct: 409 VLEY---FDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPTS 465
Query: 391 -----------SWNHTKETPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYR 439
+ T + A +T + + F+ L + ++ +L +
Sbjct: 466 NAFKVIDKQINQLVTDELTL-EQLPTAQWTLHEWLHFINNLPVDLDHQ--RMVNLDKAFD 522
Query: 440 FNGVRNCEIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYRELYAWEDTRQTAI 499
N EI W L ++A +KE P + + S GR K + PLY+EL +++ A+
Sbjct: 523 LTNSSNAEIAHAWYLLSVRADYKEVYPAMAKYLKSIGRRKLIVPLYKELAKNAESKAWAV 582
Query: 500 DTFKQHRKQMMYVTAYTLAKDLK 522
+ +KQ R + T+ LK
Sbjct: 583 EVYKQARPGYHGLAQGTVDGVLK 605
Score = 198 bits (505), Expect = 1e-56
Identities = 74/208 (35%), Positives = 106/208 (50%), Gaps = 42/208 (20%)
Query: 57 KYSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEI 116
Y F P +P YL+AI VG+L +S + +++E ++ A EF++T+ + AE++
Sbjct: 193 DYFFSMPQAIPPYLIAIGVGDLEFKAMSHQTGIYAESYILDAAVAEFDDTQAMIDKAEQM 252
Query: 117 CGTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
G Y WG YDL+MLPPSFPFGGMENP L+
Sbjct: 253 YGKYRWGRYDLLMLPPSFPFGGMENP------------------------------RLSF 282
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
TP ++AGD SL ++AHE++HSW+GNLVTN ++ WLNEGFT +VE
Sbjct: 283 ITPT------------VVAGDKSLVNLIAHELAHSWSGNLVTNESWRDLWLNEGFTSYVE 330
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQAA 264
+I + G + G +DL
Sbjct: 331 NRIMEAVFGTDRAVMEQALGAQDLNAEI 358
Score = 56.7 bits (137), Expect = 1e-08
Identities = 16/60 (26%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPE--INQIEWDLWLNTTGMPPHIPKYS 59
F+ ++ +Y A QS+ TDNF +L ++ K ++ E + W+ G+P + P+ +
Sbjct: 405 FDAFVLEYFDSHAFQSLGTDNFVKYLKANLTDKYPNIVSDNEINEWIFKAGLPSYAPQPT 464
Score = 29.4 bits (66), Expect = 3.5
Identities = 6/47 (12%), Positives = 15/47 (31%)
Query: 142 PYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAFTPGQKIEFLAK 188
Y + ++ I+ T + A +T + + F+
Sbjct: 458 SYAPQPTSNAFKVIDKQINQLVTDELTLEQLPTAQWTLHEWLHFINN 504
>2xq0_A LTA-4 hydrolase, leukotriene A-4 hydrolase; HET: BES; 1.96A
{Saccharomyces cerevisiae} PDB: 2xpz_A* 2xpy_A*
Length = 632
Score = 193 bits (491), Expect = 2e-54
Identities = 78/207 (37%), Positives = 115/207 (55%), Gaps = 43/207 (20%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFN-ETEKFLSTAEEI 116
Y F Q + +P+YL+ I G+L+S I R +V++EP +K+ EF + EKF+ TAE+I
Sbjct: 194 YRFEQKVPIPAYLIGIASGDLSSAPIGPRSTVYTEPFRLKDCQWEFENDVEKFIQTAEKI 253
Query: 117 CGTYVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAA 176
Y WG YD+++ S+P+GGME+P ++
Sbjct: 254 IFEYEWGTYDILVNVDSYPYGGMESP------------------------------NMTF 283
Query: 177 FTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVE 236
TP +LA D S V+AHE++HSW+GNLVTN ++ HFWLNEG+T+++E
Sbjct: 284 ATP------------TLLAHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLE 331
Query: 237 RKITGRLRGEAERHFDALSGLKDLKQA 263
R+I G + GE RHF AL G DL+ +
Sbjct: 332 RRIIGAIHGEPTRHFSALIGWSDLQNS 358
Score = 136 bits (345), Expect = 1e-34
Identities = 44/169 (26%), Positives = 78/169 (46%), Gaps = 21/169 (12%)
Query: 374 YDTSLQDVCNDLANRWISWNHTKET------PFSKQDLAAFTPGQKIEFLAILLDKEMYD 427
+ T+L D LA++W+ +T F+ D+ F Q + FL L +
Sbjct: 466 FITALADNVYQLADKWVEMAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETLTQNGHSN 525
Query: 428 LP-----------KVKSLQDVYRFN--GVRNCEIRFRWLKLCLKARWKEQVPHVIDMVTS 474
++L D+Y+ N +N E+ F+ K + A+ +E+ H+ D + +
Sbjct: 526 KKPKDFDWAKFPVASRALLDIYQDNIVKSQNAEVVFKMFKFQIFAKLQEEYKHLADWLGT 585
Query: 475 QGRMKYVRPLYRELYAWEDTRQTAIDTFKQHRKQMMYVTAYTLAKDLKL 523
GRMK+VRP YR L + + R+ A+ TF + + + + +DLKL
Sbjct: 586 VGRMKFVRPGYRLLNSVD--RRLALATFDKFKDTYHPICKALVKQDLKL 632
Score = 107 bits (269), Expect = 7e-25
Identities = 39/74 (52%), Positives = 54/74 (72%)
Query: 264 AGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDAL 323
A D S V+AHE++HSW+GNLVTN ++ HFWLNEG+T+++ER+I G + GE RHF AL
Sbjct: 290 AHDRSNIDVIAHELAHSWSGNLVTNCSWNHFWLNEGWTVYLERRIIGAIHGEPTRHFSAL 349
Query: 324 SGLKDLKQAVSSTG 337
G DL+ ++ S
Sbjct: 350 IGWSDLQNSIDSMK 363
Score = 58.7 bits (142), Expect = 3e-09
Identities = 20/59 (33%), Positives = 33/59 (55%), Gaps = 1/59 (1%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEI-NQIEWDLWLNTTGMPPHIPKYS 59
F+P+++ Y +FA +S+DT F L + K EI + ++W+ WL GMPP +
Sbjct: 410 FDPFIRHYFKKFAKKSLDTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPPRPHFIT 468
Score = 39.8 bits (93), Expect = 0.002
Identities = 26/135 (19%), Positives = 46/135 (34%), Gaps = 19/135 (14%)
Query: 105 ETEKFLSTAEEICGTYVWGVYDLVMLP----PSFPFGGMENPYDTSLQDVCNDLANRWIS 160
+T +FL T E + + P P + T+L D LA++W+
Sbjct: 427 DTFQFLDTLYEFYPEKKEILDSVDWETWLYKPGMPP---RPHFITALADNVYQLADKWVE 483
Query: 161 WNHTKSP------PFSKQDLAAFTPGQKIEFLAK------SSSYILAGDGSLAAVVAHEI 208
F+ D+ F Q + FL S+ D + V + +
Sbjct: 484 MAQHLKTTEDFRSEFNAIDIKDFNSNQLVLFLETLTQNGHSNKKPKDFDWAKFPVASRAL 543
Query: 209 SHSWTGNLVTNRNFE 223
+ N+V ++N E
Sbjct: 544 LDIYQDNIVKSQNAE 558
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 79.6 bits (196), Expect = 9e-16
Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 43/209 (20%)
Query: 59 SFYQPIKVPSYLVAIVVGNLASYK-----ISER---CSVWSEPELVKEAADEFNETEKFL 110
+ P P YL A+V G+ + S R ++ + + A + +
Sbjct: 196 QWQDPFPKPCYLFALVAGDFDVLRDTFTTRSGREVALELYVDRGNLDRAPWAMTSLKNSM 255
Query: 111 STAEEICGT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPF 169
EE G Y +Y +V + F G MEN N ++++ +
Sbjct: 256 KWDEERFGLEYDLDIYMIVAVD-FFNMGAMENK-------GLNIFNSKYVLARTDTATDK 307
Query: 170 SKQDLAAFTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNE 229
+ V+ HE H+WTGN VT R++ L E
Sbjct: 308 DYL--------------------------DIERVIGHEYFHNWTGNRVTCRDWFQLSLKE 341
Query: 230 GFTMFVERKITGRLRGEAERHFDALSGLK 258
G T+F +++ + L A + + ++
Sbjct: 342 GLTVFRDQEFSSDLGSRAVNRINNVRTMR 370
Score = 54.9 bits (132), Expect = 5e-08
Identities = 18/60 (30%), Positives = 32/60 (53%)
Query: 268 SLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLK 327
+ V+ HE H+WTGN VT R++ L EG T+F +++ + L A + + ++
Sbjct: 311 DIERVIGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSSDLGSRAVNRINNVRTMR 370
>2gtq_A Aminopeptidase N; alanine aminopeptidase, M1 family peptidas PSI-2,
structural genomics, protein structure initiative; 2.05A
{Neisseria meningitidis}
Length = 867
Score = 74.2 bits (182), Expect = 4e-14
Identities = 41/204 (20%), Positives = 72/204 (35%), Gaps = 43/204 (21%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYK-----ISER---CSVWSEPELVKEAADEFNETEKF 109
+ P PSYL A+V G+LA + +S R ++ + +
Sbjct: 170 VKWEDPFSKPSYLFALVAGDLAVTEDYFTTMSGRNVKIEFYTTEADKPKVGFAVESLKNA 229
Query: 110 LSTAEEICGT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPP 168
+ E G Y ++ +V + F G MEN +++ + +
Sbjct: 230 MKWDETRFGLEYDLDIFMVVAVG-DFNMGAMENKGLNIFNT-------KFVLADSRTATD 281
Query: 169 FSKQDLAAFTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLN 228
+ + +VV HE H+WTGN VT R++ L
Sbjct: 282 TDFE--------------------------GIESVVGHEYFHNWTGNRVTCRDWFQLSLK 315
Query: 229 EGFTMFVERKITGRLRGEAERHFD 252
EG T+F +++ +G A R +
Sbjct: 316 EGLTVFRDQEFSGDRASRAVRRIE 339
Score = 54.9 bits (132), Expect = 5e-08
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 268 SLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFD 321
+ +VV HE H+WTGN VT R++ L EG T+F +++ +G A R +
Sbjct: 286 GIESVVGHEYFHNWTGNRVTCRDWFQLSLKEGLTVFRDQEFSGDRASRAVRRIE 339
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.7 bits (180), Expect = 7e-14
Identities = 62/471 (13%), Positives = 131/471 (27%), Gaps = 146/471 (30%)
Query: 57 KYSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEI 116
+Y Y+ I + + A V N + + ++ + E + + + + +
Sbjct: 15 QYQ-YKDI-LSVFEDAFV-DNFDCKDVQD-----MPKSILSKE-----EIDHIIMSKDAV 61
Query: 117 CGTYVWGVYDLVMLPPS-----FPFGGMENPYD---TSLQDVCNDLANRWISWN------ 162
GT ++ ++ F + Y + ++ + +
Sbjct: 62 SGTLR--LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 163 HTKSPPFSKQDLAAFTPGQKI-EFL--AKSSSYIL----AGDG--SLAAVVAHEISHSWT 213
+ + F+K +++ P K+ + L + + +L G G +A V
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYK---- 175
Query: 214 GNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVV 273
+ +F+ FWLN L L+ L
Sbjct: 176 --VQCKMDFKIFWLN---------------LKNCNSPETVLEMLQKL------------- 205
Query: 274 AHEISHSWTGNLVTNRNFEHF--WLNEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQ 331
++I +WT + N + + ++ K + + L L ++
Sbjct: 206 LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSK----------PYENCLLVLLNV-- 253
Query: 332 AVSSTGPLWDSKR-NALDFQKGRHYQCKIERLKCGSAILFIYGYDTSLQDVCNDLANRWI 390
++K NA + CKI L T + V + L+
Sbjct: 254 --------QNAKAWNAFNLS------CKI---------LLT----TRFKQVTDFLSA--- 283
Query: 391 SWNHTKETPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYRFNGVRNCEIRF 450
T TP + L LD DLP+
Sbjct: 284 --ATTTH-ISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV-------------LTTNP 327
Query: 451 RWLKLC------LKARWK-------EQVPHVIDMVTSQGRMKYVRPLYREL 488
R L + A W +++ +I+ + R ++ L
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL 378
Score = 45.6 bits (107), Expect = 4e-05
Identities = 77/466 (16%), Positives = 121/466 (25%), Gaps = 163/466 (34%)
Query: 7 KKYLAEFALQSIDTD---NFKAH-LTSHFAHKPE-INQIEWDLWLNTTGMPPHIPKYSFY 61
K ++A S +FK L + PE + ++ L P +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQI--DPNWTSRSDHS 220
Query: 62 QPIKVPSYLVAIVVGNLASYKISERC-----SVWSEPELVKEAADEFNETEKFLST---- 112
IK+ + + + L K E C +V + +A + FN + K L T
Sbjct: 221 SNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCKILLTTRFK 275
Query: 113 ---------------------------AEEICGTYVWGVYDLVMLPPSFPFGGMENPYDT 145
+ + Y+ LP NP
Sbjct: 276 QVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ--DLPREVLTT---NPRRL 330
Query: 146 SL-QDVCNDLANRWISWNHTKSPPFSK------------------QDLAAFTPGQKI--- 183
S+ + D W +W H + L+ F P I
Sbjct: 331 SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI 390
Query: 184 ---------------EFLAKSSSYILA-GDGSLAAVVAHEISHSWTGNLVTNRNFEHFWL 227
+ K Y L + + I L N H
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL-ENEYALH--- 446
Query: 228 NEGFTMFVERKITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVT 287
R I + FD DL D + + H H L
Sbjct: 447 ---------RSIVDHYN--IPKTFD----SDDLIPPYLDQYFYSHIGH---H-----LKN 483
Query: 288 NRNFEHFWLNEGFTM------FVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWD 341
+ E L F M F+E+KI RH W+
Sbjct: 484 IEHPERMTL---FRMVFLDFRFLEQKI---------RH----------------DSTAWN 515
Query: 342 SKRNALD-FQKGRHYQCKI-------ERLKCGSAIL-FIYGYDTSL 378
+ + L+ Q+ + Y+ I ERL AIL F+ + +L
Sbjct: 516 ASGSILNTLQQLKFYKPYICDNDPKYERLVN--AILDFLPKIEENL 559
>3se6_A Endoplasmic reticulum aminopeptidase 2; thermolysin-like catalytic
domain, zinc BIND glycosylation, hydrolase; HET: LYS NAG
MES MAN; 3.08A {Homo sapiens}
Length = 967
Score = 72.5 bits (178), Expect = 1e-13
Identities = 54/260 (20%), Positives = 86/260 (33%), Gaps = 69/260 (26%)
Query: 2 FEPWLKKYLAEFALQSIDTDNFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYSFY 61
FEP A A D FKA+ + + + + T + + + F
Sbjct: 199 FEP----TQARMAFPCFDEPLFKANFSIKIRRESRHIALSNMPKVKTIELEGGLLEDHFE 254
Query: 62 QPIKVPSYLVAIVVGNLASYKISERC----SVWSEPELVKEAADEFNETEKFLSTAEEIC 117
+K+ +YLVA +V + S S+++ P+ + + K L E+
Sbjct: 255 TTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTHYALQASLKLLDFYEKYF 314
Query: 118 GTYVWGVY-----DLVMLPPSFPFGGMENPYDTSLQDVCNDLANRW---------ISWNH 163
Y Y DL+ +P F G MEN W + ++
Sbjct: 315 DIY----YPLSKLDLIAIP-DFAPGAMEN----------------WGLITYRETSLLFDP 353
Query: 164 TKSPPFSKQDLAAFTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFE 223
S K + V+AHE++H W GNLVT +
Sbjct: 354 KTSSASDKL--------------------------WVTRVIAHELAHQWFGNLVTMEWWN 387
Query: 224 HFWLNEGFTMFVERKITGRL 243
WLNEGF ++E
Sbjct: 388 DIWLNEGFAKYMELIAVNAT 407
Score = 59.4 bits (144), Expect = 2e-09
Identities = 18/43 (41%), Positives = 24/43 (55%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 312
V+AHE++H W GNLVT + WLNEGF ++E
Sbjct: 365 TRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNAT 407
>2xdt_A Endoplasmic reticulum aminopeptidase 1; glycoprotein,
metal-binding, metalloprotease, protease, hydrolase,
adaptive immunity; HET: NAG; 2.70A {Homo sapiens} PDB:
2yd0_A* 3qnf_A* 3mdj_A*
Length = 897
Score = 71.3 bits (175), Expect = 3e-13
Identities = 51/236 (21%), Positives = 81/236 (34%), Gaps = 57/236 (24%)
Query: 22 NFKAHLTSHFAHKPEINQIEWDLWLNTTGMPPHIPKYSFYQPIKVPSYLVAIVVGNLASY 81
FKA + +P I + + + + + F +K+ +YLVA ++ + S
Sbjct: 153 AFKASFSIKIRREPRHLAISNMPLVKSVTVAEGLIEDHFDVTVKMSTYLVAFIISDFESV 212
Query: 82 KISE----RCSVWSEPELVKEAADEFNETEKFLSTAEEICGT-YVWGVYDLVMLPPSFPF 136
+ SV++ P+ + +A + L E+ Y DL +P F
Sbjct: 213 SKITKSGVKVSVYAVPDKINQADYALDAAVTLLEFYEDYFSIPYPLPKQDLAAIP-DFQS 271
Query: 137 GGMENPYDTSLQDVCNDLANRW---------ISWNHTKSPPFSKQDLAAFTPGQKIEFLA 187
G MEN W + ++ KS SK
Sbjct: 272 GAMEN----------------WGLTTYRESALLFDAEKSSASSKL--------------- 300
Query: 188 KSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 243
+ VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 301 -----------GITMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345
Score = 59.0 bits (143), Expect = 3e-09
Identities = 19/43 (44%), Positives = 23/43 (53%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 312
VAHE++H W GNLVT + WLNEGF F+E
Sbjct: 303 TMTVAHELAHQWFGNLVTMEWWNDLWLNEGFAKFMEFVSVSVT 345
>1z5h_A Tricorn protease interacting factor F3; zinc aminopeptidase,
gluzicins, superhelix, hydrolase; 2.30A {Thermoplasma
acidophilum} PDB: 1z1w_A 3q7j_A*
Length = 780
Score = 67.4 bits (165), Expect = 5e-12
Identities = 38/194 (19%), Positives = 59/194 (30%), Gaps = 49/194 (25%)
Query: 58 YSFYQPIKVPSYLVAIVVGNLASYKISER-CSVWSEPELVKEAADEFNETEKFLSTAEEI 116
F ++ +YL+ + +G R + + + K + E
Sbjct: 150 VEFQDTPRMSTYLLYVGIGKFRYEYEKYRDIDLILASLKDIRSKYPLDMARKSVEFYENY 209
Query: 117 CGT-YVWGVYDLVMLPPSFPFGGMENP----YDTS--LQDVCNDLANRWISWNHTKSPPF 169
G Y L+ +P F G MEN + S
Sbjct: 210 FGIPYALPKMHLISVP-EFGAGAMENWGAITFREIYMDIA--------------ENSAVT 254
Query: 170 SKQDLAAFTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLNE 229
K+ + A V+AHEI+H W G+LVT + + WLNE
Sbjct: 255 VKR--------------------------NSANVIAHEIAHQWFGDLVTMKWWNDLWLNE 288
Query: 230 GFTMFVERKITGRL 243
F F+ K L
Sbjct: 289 SFATFMSYKTMDTL 302
Score = 58.9 bits (143), Expect = 3e-09
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRL 312
A V+AHEI+H W G+LVT + + WLNE F F+ K L
Sbjct: 260 ANVIAHEIAHQWFGDLVTMKWWNDLWLNESFATFMSYKTMDTL 302
>3ebh_A PFA-M1, M1 family aminopeptidase; hydrolase, metal-binding,
metalloprotease, P hydrolase inhibitor; HET: BES; 1.65A
{Plasmodium falciparum} PDB: 3ebg_A* 3ebi_A* 3q43_A*
3q44_A* 3t8v_A*
Length = 889
Score = 67.2 bits (164), Expect = 7e-12
Identities = 46/199 (23%), Positives = 72/199 (36%), Gaps = 44/199 (22%)
Query: 59 SFYQPIKVPSYLVAIVVGNLAS------YKISER---CSVWSEPELVKEAADEFNETEKF 109
F P P YL A+V G+L K +++ V+SE + V + +K
Sbjct: 178 RFNDPPLKPCYLFAVVAGDLKHLSATYITKYTKKKVELYVFSEEKYVSKLQWALECLKKS 237
Query: 110 LSTAEEICGT-YVWGVYDLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPP 168
++ E+ G Y +LV + F G MEN L ++ N + + + S
Sbjct: 238 MAFDEDYFGLEYDLSRLNLVAVS-DFNVGAMEN---KGL-NIFNANS---LLASKKNSID 289
Query: 169 FSKQDLAAFTPGQKIEFLAKSSSYILAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLN 228
FS + VV HE H +TGN VT R++ L
Sbjct: 290 FSYA--------------------------RILTVVGHEYFHQYTGNRVTLRDWFQLTLK 323
Query: 229 EGFTMFVERKITGRLRGEA 247
EG T+ E + +
Sbjct: 324 EGLTVHRENLFSEEMTKTV 342
Score = 52.2 bits (125), Expect = 3e-07
Identities = 16/47 (34%), Positives = 22/47 (46%)
Query: 270 AAVVAHEISHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEA 316
VV HE H +TGN VT R++ L EG T+ E + +
Sbjct: 296 LTVVGHEYFHQYTGNRVTLRDWFQLTLKEGLTVHRENLFSEEMTKTV 342
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 1e-08
Identities = 93/578 (16%), Positives = 162/578 (28%), Gaps = 259/578 (44%)
Query: 1 DFEPWLKKYLAEFA---LQSIDTDNFKAH-LTSHFAHKPEINQIEWDLWLNTTGMPPHIP 56
F+ L L EF L+ D H L + + + ++
Sbjct: 79 QFDQVLNLCLTEFENCYLEGND-----IHALAAKLLQENDTTLVKTKEL----------- 122
Query: 57 KYSFYQPIKVPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADE-------FN---ET 106
IK +Y+ A ++ K S L + + F T
Sbjct: 123 -------IK--NYITARIMAKRPFDK-------KSNSALFRAVGEGNAQLVAIFGGQGNT 166
Query: 107 EKFLSTAEEICGTYVWGVYDLV-----ML----------PPSFPFGG-----MENPYDTS 146
+ + ++ TY V DL+ L F G +ENP +T
Sbjct: 167 DDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTP 226
Query: 147 LQDVCNDLANRWISWNHTKSPPFSK--QDLAAF---------TPGQKIEFLAKSSSY--- 192
+D L + IS P Q LA + TPG+ +L ++ +
Sbjct: 227 DKDY---LLSIPISC------PLIGVIQ-LAHYVVTAKLLGFTPGELRSYLKGATGHSQG 276
Query: 193 ILAGDGSLAAVVAHEISHSWTGNLVTNRNFEH---------FWL---------------- 227
++ A +A + SW +F F++
Sbjct: 277 LVT-----AVAIAE--TDSW-------ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPS 322
Query: 228 --------NEGFT--MFVERKITGRLRGEAERHFDALSGLKDLKQAAGDGSLAAVVAHEI 277
NEG M I+ + + + + + + + EI
Sbjct: 323 ILEDSLENNEGVPSPMLS---ISNLTQEQVQDYVNKTN-----SHLPAGKQV------EI 368
Query: 278 SHSWTGNLVTNRNFEHFWLNEGFTMFVERKITGRLRGEAERHFDALSGLK-DLKQAVSST 336
S LV N G V ++G + +L GL L++A + +
Sbjct: 369 S------LV----------N-GAKNLV---VSGPPQ--------SLYGLNLTLRKAKAPS 400
Query: 337 GPLWDSKRNALDFQKGRHYQCKI---ER-LKCGSAILFI-------YGYDTSLQDVCNDL 385
G LD Q +I ER LK + L + + + DL
Sbjct: 401 G---------LD-------QSRIPFSERKLKFSNRFLPVASPFHSHL-LVPASDLINKDL 443
Query: 386 ANRWISWNHTKETPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYR-FNG-- 442
+S+N +D+ +P VY F+G
Sbjct: 444 VKNNVSFNA--------KDIQ---------------------IP-------VYDTFDGSD 467
Query: 443 VRNC--EIR---FRWLKLCLKARWKEQVP----HVIDM 471
+R I + + L +W+ H++D
Sbjct: 468 LRVLSGSISERIVDCI-IRLPVKWETTTQFKATHILDF 504
Score = 38.9 bits (90), Expect = 0.005
Identities = 62/386 (16%), Positives = 103/386 (26%), Gaps = 142/386 (36%)
Query: 1 DFEPWLKK--------YLAE--------FALQ-----------SIDTDNFKAHLTSHFAH 33
+ WL+ YL +Q +++L H
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGH 273
Query: 34 KPEI--------------------NQIEWDLWL--------NTTGMPPHIPKYSFYQPIK 65
+ I ++ T +PP I + S
Sbjct: 274 SQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG 333
Query: 66 VPSYLVAIVVGNLASYKISERCSVWSEPELVKEAADEFNETEKFLSTAEEICGTYVWGVY 125
VPS +++I NL E V++ ++ N L +++ +
Sbjct: 334 VPSPMLSIS--NL-------------TQEQVQDYVNKTN---SHLPAGKQV---EI---- 368
Query: 126 DLVMLPPSFPFGGMENPYDTSLQDVCNDLANRWISWNHTKSPPFSKQDLAAFT---PGQK 182
LV + G P SL + L K+P Q F+
Sbjct: 369 SLVNGAKNLVVSG--PP--QSLYGLNLTLRKA-------KAPSGLDQSRIPFSERKLKFS 417
Query: 183 IEFLAKS----SSYIL--AGDGSLAAVVAHEIS-----------HSWTG-NLVTNRNFEH 224
FL + S L A D +V + +S ++ G +L R
Sbjct: 418 NRFLPVASPFHSHL-LVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDL---RVLS- 472
Query: 225 FWLNEGFTMFVERKITGRLRGEAERHFDA----------LSGLKDLKQAAGDGSLAAVVA 274
V+ I ++ E F A SGL L DG+ V+
Sbjct: 473 ---GSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIV 529
Query: 275 HEISHSWTGNLVTNRNFEHFWLNEGF 300
G L N + ++ GF
Sbjct: 530 -------AGTLDINPDDDY-----GF 543
Score = 33.9 bits (77), Expect = 0.19
Identities = 27/148 (18%), Positives = 51/148 (34%), Gaps = 56/148 (37%)
Query: 374 YDTSLQDVCNDLANRWISWN----HTKET-PFSKQDLAAFTPGQKIEFLAILLDKEMYDL 428
Y TS D+ WN H K+T FS D I+++
Sbjct: 1636 YKTS--KAAQDV------WNRADNHFKDTYGFSILD--------------IVINN----- 1668
Query: 429 PKVKSLQDVYRFNGVRNCEIRFRWLKLCLKARWKEQVPHVIDMVTSQGRMKYVRPLYREL 488
P + ++ F G + IR + + + G++K +++E+
Sbjct: 1669 PVNLT---IH-FGGEKGKRIRENYSAMIFET-------------IVDGKLK-TEKIFKEI 1710
Query: 489 YAWEDTRQTAIDTFKQHRKQMMYVTAYT 516
+ T+ TF + K ++ T +T
Sbjct: 1711 ----NEHSTSY-TF-RSEKGLLSATQFT 1732
>4fgm_A Aminopeptidase N family protein; structural genomics, PSI-biology,
northeast structural genom consortium, NESG,
peptidase_M61, PDZ; 2.39A {Idiomarina loihiensis L2TR}
Length = 597
Score = 35.0 bits (79), Expect = 0.064
Identities = 23/142 (16%), Positives = 47/142 (33%), Gaps = 14/142 (9%)
Query: 196 GDGSLAAVVAHEISHSWTGNLVTNRNFEHF-----------WLNEGFTMFVERKITGRLR 244
+ ++ HE HSW + + F + W EG T + + +
Sbjct: 263 NYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGMTSYFDDYLLHTSG 322
Query: 245 GEAERHFDALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVTNRNFEHFWLN---EGFT 301
E+ + L G + G G V +WT N N + ++ +G
Sbjct: 323 IIDEKRYLKLLGDTLSRVERGAGQYQQSVTESSFLAWTKFYQQNENAPNSIVSYYAKGAL 382
Query: 302 MFVERKITGRLRGEAERHFDAL 323
+ + + RL+ + + +
Sbjct: 383 IALSLDLMLRLQSDHKLTLARV 404
Score = 33.4 bits (75), Expect = 0.18
Identities = 18/116 (15%), Positives = 36/116 (31%), Gaps = 27/116 (23%)
Query: 252 DALSGLKDLKQAAGDGSLAAVVAHEISHSWTGNLVTNRNFEHF-----------WLNEGF 300
L + + ++ HE HSW + + F + W EG
Sbjct: 250 KDLISAHQYEMNDNYQTFLSLCCHEYFHSWNIKTLKPKAFLPYQLEKESYTEQLWFYEGM 309
Query: 301 TMFVERKITGRLRGEAERHFDALSGLKDLKQAVSSTGPLWDSKRNALDFQKGRHYQ 356
T + + + SG+ D K+ + L + ++ G++ Q
Sbjct: 310 TSYFDDYLLHT------------SGIIDEKRYLK----LLGDTLSRVERGAGQYQQ 349
>3c37_A Peptidase, M48 family; Q74D82, GSR143A, structural genomics,
protein structure initiative, northeast structural
genomics consortium; 1.70A {Geobacter sulfurreducens
pca}
Length = 253
Score = 33.5 bits (77), Expect = 0.14
Identities = 13/25 (52%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
Query: 255 SGLKDLKQAAGDGSLAAVVAHEISH 279
+GL LK A + LA V+AHEI+H
Sbjct: 88 TGL--LKAADNETELAGVLAHEINH 110
Score = 32.3 bits (74), Expect = 0.33
Identities = 18/80 (22%), Positives = 30/80 (37%), Gaps = 21/80 (26%)
Query: 144 DTSLQDVCNDLANRWISWNHTKSPPFS-----KQDLAAF-TPGQKIEFLAKSSSYILAG- 196
D +Q + + R +S + + AF PG ++ Y+ G
Sbjct: 39 DPEVQRYVDKVGKRLLSGARAVEFDYVFKVVKDDSVNAFAIPGGRV--------YVHTGL 90
Query: 197 ------DGSLAAVVAHEISH 210
+ LA V+AHEI+H
Sbjct: 91 LKAADNETELAGVLAHEINH 110
>1p94_A Plasmid partition protein PArg; ribbon-helix-helix, dimer, DNA
binding, cell cycle; NMR {Salmonella enterica} SCOP:
a.43.1.3
Length = 76
Score = 29.4 bits (65), Expect = 0.54
Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 10/67 (14%)
Query: 327 KDLKQAVSSTGPLWDSKRNALDFQKGRHYQCKIERLKCGSAILFIYGYDTSLQDVCNDLA 386
+DL++ V++ KR ++F + +H + K + G TS+ DV N L
Sbjct: 19 RDLERVVTAPVSSGKIKRVNVNFDEEKHTRFKAACARKG----------TSITDVVNQLV 68
Query: 387 NRWISWN 393
+ W+ N
Sbjct: 69 DNWLKEN 75
>3cqb_A Probable protease HTPX homolog; heat shock protein HTPX domain,
PSI-2, protein structure INI structural genomics; HET:
MSE; 1.86A {Vibrio parahaemolyticus rimd 2210633}
Length = 107
Score = 28.8 bits (65), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 200 LAAVVAHEISHSWTGNLVTNR 220
AV+AHE+SH + N
Sbjct: 83 AEAVLAHEVSH------IANG 97
Score = 28.8 bits (65), Expect = 1.7
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 6/21 (28%)
Query: 269 LAAVVAHEISHSWTGNLVTNR 289
AV+AHE+SH + N
Sbjct: 83 AEAVLAHEVSH------IANG 97
>3r4i_A Citrate lyase; TIM beta/alpha-barrel, structural genomics, joint
center for structural genomics, JCSG, protein structure
initiative; 2.24A {Burkholderia xenovorans}
Length = 339
Score = 29.2 bits (66), Expect = 3.8
Identities = 7/43 (16%), Positives = 13/43 (30%), Gaps = 7/43 (16%)
Query: 397 ETPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYR 439
+ + D+ K I L PK++ + D
Sbjct: 92 DHAHWRDDVRLILRAAKRAPAYITL-------PKIRHVHDAAE 127
>1fcq_A Hyaluronoglucosaminidase; 7-stranded (beta/alpha) TIM barrel,
glycosidase family 56, allergen, hydrolase; 1.60A {Apis
mellifera} SCOP: c.1.8.9 PDB: 1fcu_A 1fcv_A* 2j88_A
Length = 350
Score = 28.7 bits (64), Expect = 4.7
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 5/41 (12%)
Query: 90 WSEPELVKEAADEFNET-----EKFLSTAEEICGTYVWGVY 125
W + + +EA F + E+ L A+ + WG Y
Sbjct: 144 WDDQRVEQEAKRRFEKYGQLFMEETLKAAKRMRPAANWGYY 184
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.7
Identities = 7/40 (17%), Positives = 13/40 (32%), Gaps = 16/40 (40%)
Query: 34 KPEINQIEWDLWLNTTGMPPHIPKYSFYQPIKVPSYLVAI 73
K + +++ L L Y P+ +AI
Sbjct: 19 KQALKKLQASLKL--------------YADDSAPA--LAI 42
>3qqw_A Putative citrate lyase; TIM beta/alpha-barrel, structural genomics,
joint center for structural genomics, JCSG, protein
structure initiative; HET: MSE; 2.44A {Ralstonia
eutropha}
Length = 332
Score = 28.1 bits (63), Expect = 7.0
Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 7/42 (16%)
Query: 398 TPFSKQDLAAFTPGQKIEFLAILLDKEMYDLPKVKSLQDVYR 439
P +QD+ G I + PK + V
Sbjct: 94 HPAWRQDVDIIVNGAGGRLAYITV-------PKATNSGQVAE 128
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.135 0.423
Gapped
Lambda K H
0.267 0.0425 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,588,170
Number of extensions: 517985
Number of successful extensions: 1015
Number of sequences better than 10.0: 1
Number of HSP's gapped: 989
Number of HSP's successfully gapped: 62
Length of query: 537
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 439
Effective length of database: 3,965,535
Effective search space: 1740869865
Effective search space used: 1740869865
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.7 bits)