BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2733
(644 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 79/139 (56%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A +G EI ++LL + +VN ++ G+ L+ A
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ K DG+TPLH+A H+EIVE+L+ K ++NA D
Sbjct: 78 EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
+TP A+ +G + L
Sbjct: 135 KTPFDLAIREGHEDIAEVL 153
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G+ L+ A G++++ E +L ++ K DG+TP
Sbjct: 16 DEVRILMANGADVNA--KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTP 71
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+ ++ Q
Sbjct: 72 LHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 272 D 272
D
Sbjct: 131 D 131
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
K DG+TPLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
++ +D DG LH RE + I E L G N
Sbjct: 90 AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 128
Score = 33.9 bits (76), Expect = 0.25, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 57/158 (36%), Gaps = 42/158 (26%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSG-ANR 60
T LH+ A +G +E + +LL GA V D G T LH AA + +++ N
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
K Y H R +L VE
Sbjct: 97 KDKDGYTPLHLAA------REGHLEIVE-------------------------------- 118
Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
VLL+ G +VN QD TP A+ +G E+I +L
Sbjct: 119 ---VLLKAGADVNAQDKFGKTPFDLAIREGHEDIAEVL 153
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 34/141 (24%), Positives = 56/141 (39%), Gaps = 25/141 (17%)
Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPI 293
++NA D TPL A +G ++ L+ ++ +D DG LH
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL-----------A 75
Query: 294 TREKSVPIYEEYLSVGGPSN---EHGIL----------LAVFLFLVKHGAPLSLENNNRQ 340
RE + I E L G N + G L + L+K GA ++ ++ +
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 341 KPLDL-ILEDTSLLNEIMEHA 360
P DL I E + E+++ A
Sbjct: 136 TPFDLAIREGHEDIAEVLQKA 156
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 73.9 bits (180), Expect = 2e-13, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 78/139 (56%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A +G EI ++LL + +VN ++ G+ L+ A
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ K DG+TPLH+A H+EIVE+L+ K ++NA D
Sbjct: 78 EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
+TP A+ G + L
Sbjct: 135 KTPFDLAIDNGNEDIAEVL 153
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G+ L+ A G++++ E +L ++ K DG+TP
Sbjct: 16 DEVRILMANGADVNA--KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTP 71
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+ ++ Q
Sbjct: 72 LHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 130
Query: 272 D 272
D
Sbjct: 131 D 131
Score = 54.7 bits (130), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
K DG+TPLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
++ +D DG LH RE + I E L G N
Sbjct: 90 AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 128
Score = 32.7 bits (73), Expect = 0.70, Method: Composition-based stats.
Identities = 41/158 (25%), Positives = 56/158 (35%), Gaps = 42/158 (26%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSG-ANR 60
T LH+ A +G +E + +LL GA V D G T LH AA + +++ N
Sbjct: 37 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA 96
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
K Y H R +L VE
Sbjct: 97 KDKDGYTPLHLAA------REGHLEIVE-------------------------------- 118
Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
VLL+ G +VN QD TP A+ G E+I +L
Sbjct: 119 ---VLLKAGADVNAQDKFGKTPFDLAIDNGNEDIAEVL 153
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 30/129 (23%), Positives = 51/129 (39%), Gaps = 24/129 (18%)
Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPI 293
++NA D TPL A +G ++ L+ ++ +D DG LH
Sbjct: 27 DVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHL-----------A 75
Query: 294 TREKSVPIYEEYLSVGGPSN---EHGIL----------LAVFLFLVKHGAPLSLENNNRQ 340
RE + I E L G N + G L + L+K GA ++ ++ +
Sbjct: 76 AREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGK 135
Query: 341 KPLDLILED 349
P DL +++
Sbjct: 136 TPFDLAIDN 144
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 73.9 bits (180), Expect = 3e-13, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L+ NG +VN D++ TP+H A +G +EI LL+S +VN ++S G L+YA
Sbjct: 23 LIENGADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVN--AKDSDGRTPLHYAAKE 80
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G+ ++ + L +++ K SDG TPLH A H EIV+LL+ K ++N D R
Sbjct: 81 GHKEIVK--LLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISK-GADVNTSDSDGR 137
Query: 244 TPLMAAVGQGQTSVINYL 261
TPL A G ++ L
Sbjct: 138 TPLDLAREHGNEEIVKLL 155
Score = 36.6 bits (83), Expect = 0.043, Method: Composition-based stats.
Identities = 41/160 (25%), Positives = 63/160 (39%), Gaps = 44/160 (27%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
+T LH A +G E + +L+++GA V D G T LHYAA
Sbjct: 38 RTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAA------------------- 78
Query: 61 SRKHIYKERHRTVTTEKVQRPS--NLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
KE H+ + + + + N + TP L + E +
Sbjct: 79 ------KEGHKEIVKLLISKGADVNAKDSDGRTP--------------LHYAAKEGHKEI 118
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
+K +L+ G +VN D++ TP+ A G EEI LL
Sbjct: 119 VK---LLISKGADVNTSDSDGRTPLDLAREHGNEEIVKLL 155
Score = 36.2 bits (82), Expect = 0.064, Method: Composition-based stats.
Identities = 46/186 (24%), Positives = 74/186 (39%), Gaps = 47/186 (25%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRKHIYK 67
A G + + L+ GA V D G T LHYAA K
Sbjct: 12 AENGNKDRVKDLIENGADVNASDSDGRTPLHYAA-------------------------K 46
Query: 68 ERHRTVTTEKVQRPS--NLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVL 125
E H+ + + + + N + TP L + E ++K +L
Sbjct: 47 EGHKEIVKLLISKGADVNAKDSDGRTP--------------LHYAAKEGHKEIVK---LL 89
Query: 126 LRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRG 184
+ G +VN +D++ TP+H A +G +EI LL+S +VN +S G L+ A G
Sbjct: 90 ISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLISKGADVN--TSDSDGRTPLDLAREHG 147
Query: 185 NMKVTE 190
N ++ +
Sbjct: 148 NEEIVK 153
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 34/145 (23%), Positives = 61/145 (42%), Gaps = 21/145 (14%)
Query: 215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
A N + + V+ L+E ++NA D RTPL A +G ++ L+ + ++ +D D
Sbjct: 11 AAENGNKDRVKDLIEN-GADVNASDSDGRTPLHYAAKEGHKEIVKLLISKGADVNAKDSD 69
Query: 275 GNGLLHF-----------LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFL 323
G LH+ L I K + P++ Y + G +
Sbjct: 70 GRTPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLH--YAAKEGHKE-------IVK 120
Query: 324 FLVKHGAPLSLENNNRQKPLDLILE 348
L+ GA ++ +++ + PLDL E
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLARE 145
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 51/140 (36%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D++ TP+H A KG EI +LL H +VN + G L+ A L
Sbjct: 32 ILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN--AADKMGDTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G++++ E +L +N A V T GFTPLH+A H+EIVE+L+ KY ++NA D
Sbjct: 90 YGHLEIVEVLL---KNGADVNATDTYGFTPLHLAADAGHLEIVEVLL-KYGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN E+ G L+ A ++G++++ E +L ++ K D TP
Sbjct: 28 DEVRILMANGADVNA--EDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGD--TP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K ++NA D TPL A G ++ L+ ++ Q
Sbjct: 84 LHLAALYGHLEIVEVLL-KNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 31/93 (33%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V D G TPLH+A H+EIVE+L+ K+ ++NA D TPL
Sbjct: 28 DEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLL-KHGADVNAADKMGDTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G ++ L+ ++ D G LH
Sbjct: 87 AALYGHLEIVEVLLKNGADVNATDTYGFTPLHL 119
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 51/194 (26%), Positives = 77/194 (39%), Gaps = 51/194 (26%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGANRSRKHIY 66
A G +E+ IL+A GA V DD+G T LH AA + +++ H + N + K
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVNAADK--- 78
Query: 67 KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP---SAECSGILIKQDF 123
M DTP +A + I +
Sbjct: 79 ---------------------------------------MGDTPLHLAALYGHLEIVE-- 97
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D TP+H A G EI +LL + +VN ++ G + ++
Sbjct: 98 VLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLKYGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 37.7 bits (86), Expect = 0.019, Method: Composition-based stats.
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
KT LH+ A +G +E + +LL GA V D GDT LH AA + +++
Sbjct: 48 KTPLHLAAIKGHLEIVEVLLKHGADVNAADKMGDTPLHLAALYGHLEIVEV 98
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAA 121
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 72.4 bits (176), Expect = 8e-13, Method: Composition-based stats.
Identities = 50/138 (36%), Positives = 75/138 (54%), Gaps = 6/138 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L+ NG +VN D++ TP+H A G +E+ LL+S +VN ++S G L++A
Sbjct: 23 LIENGADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVN--AKDSDGRTPLHHAAEN 80
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G+ +V + L +++ K SDG TPLH A N H E+V+LL+ K ++N D R
Sbjct: 81 GHKEVVK--LLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLISK-GADVNTSDSDGR 137
Query: 244 TPLMAAVGQGQTSVINYL 261
TPL A G V+ L
Sbjct: 138 TPLDLAREHGNEEVVKLL 155
Score = 33.5 bits (75), Expect = 0.33, Method: Composition-based stats.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 21/145 (14%)
Query: 215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
A N + + V+ L+E ++NA D RTPL A G V+ L+ + ++ +D D
Sbjct: 11 AAENGNKDRVKDLIEN-GADVNASDSDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSD 69
Query: 275 GNGLLHF-----------LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFL 323
G LH L I K + P++ N H V
Sbjct: 70 GRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHH------AAENGHK---EVVK 120
Query: 324 FLVKHGAPLSLENNNRQKPLDLILE 348
L+ GA ++ +++ + PLDL E
Sbjct: 121 LLISKGADVNTSDSDGRTPLDLARE 145
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH A G E + +L+++GA V D G T LH+AA + +++
Sbjct: 38 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 88
Score = 31.2 bits (69), Expect = 2.1, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH A G E + +L+++GA V D G T LH+AA + +++
Sbjct: 71 RTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKL 121
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 70.1 bits (170), Expect = 3e-12, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+N TP+H A A G E +++LL + +VN +S G L+ A
Sbjct: 24 ILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLLKNGADVN--ASDSAGITPLHLAAY 81
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ + G+TPLH+A + +EIVE+L+ K+ ++NA D
Sbjct: 82 DGHLEIVEVLLKHGADVNAYDRA--GWTPLHLAALSGQLEIVEVLL-KHGADVNAQDALG 138
Query: 243 RTPLMAAVGQGQTSVINYL 261
T ++ QGQ + L
Sbjct: 139 LTAFDISINQGQEDLAEIL 157
Score = 63.2 bits (152), Expect = 4e-10, Method: Composition-based stats.
Identities = 43/134 (32%), Positives = 73/134 (54%), Gaps = 7/134 (5%)
Query: 143 MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV 202
+ A A +E+++L+ + +VN +N G L+ A G +++ E +L +N A V
Sbjct: 11 LEAAAAGQDDEVRILMANGADVNATDDN--GLTPLHLAAANGQLEIVEVLL---KNGADV 65
Query: 203 PKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
+ S G TPLH+A ++ H+EIVE+L+ K+ ++NA D TPL A GQ ++ L
Sbjct: 66 NASDSAGITPLHLAAYDGHLEIVEVLL-KHGADVNAYDRAGWTPLHLAALSGQLEIVEVL 124
Query: 262 MLRDVALDIQDIDG 275
+ ++ QD G
Sbjct: 125 LKHGADVNAQDALG 138
Score = 45.4 bits (106), Expect = 1e-04, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 46/93 (49%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V T D G TPLH+A N +EIVE+L+ K ++NA D TPL
Sbjct: 20 DEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL-KNGADVNASDSAGITPLHL 78
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G ++ L+ ++ D G LH
Sbjct: 79 AAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHL 111
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 20/50 (40%), Positives = 29/50 (58%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ AY G +E + +LL GA V D AG T LH AA + + +++
Sbjct: 74 TPLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEV 123
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D AG T LH AA+ + +++
Sbjct: 41 TPLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVEV 90
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
A G +E+ IL+A GA V DD G T LH AA + + +++
Sbjct: 14 AAAGQDDEVRILMANGADVNATDDNGLTPLHLAAANGQLEIVEV 57
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 69.7 bits (169), Expect = 5e-12, Method: Composition-based stats.
Identities = 51/137 (37%), Positives = 71/137 (51%), Gaps = 4/137 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL NG + N D++ TP+H A G +EI LLLS + ++S G L+YA G
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENG 81
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ ++ + L L++ K SDG TPLH A N H EIV+LL+ K + N D RT
Sbjct: 82 HKEIVK--LLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSK-GADPNTSDSDGRT 138
Query: 245 PLMAAVGQGQTSVINYL 261
PL A G ++ L
Sbjct: 139 PLDLAREHGNEEIVKLL 155
Score = 52.8 bits (125), Expect = 6e-07, Method: Composition-based stats.
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
SDG TPLH A N H EIV+LL+ K + NA D RTPL A G ++ L+ +
Sbjct: 35 SDGRTPLHYAAENGHKEIVKLLLSK-GADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKG 93
Query: 266 VALDIQDIDGNGLLHF 281
+ +D DG LH+
Sbjct: 94 ADPNAKDSDGRTPLHY 109
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+T LH A G E + +LL++GA D G T LHYAA
Sbjct: 38 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 78
Score = 31.6 bits (70), Expect = 1.5, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+T LH A G E + +LL++GA D G T LHYAA
Sbjct: 71 RTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAA 111
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
NA D RTPL A G ++ L+ + + +D DG LH+
Sbjct: 31 NASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHY 76
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 68.9 bits (167), Expect = 7e-12, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 77/139 (55%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A +G EI ++LL + +VN ++ G+ L+ A
Sbjct: 32 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AKDKDGYTPLHLAAR 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ K DG+TPLH+A H+EIVE+L+ K ++NA D
Sbjct: 90 EGHLEIVEVLLKAGADVNA--KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G+ L+ A G++++ E +L ++ K DG+TP
Sbjct: 28 DEVRILMANGADVNA--KDKDGYTPLHLAAREGHLEIVEVLLKAGADVNA--KDKDGYTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+ ++ Q
Sbjct: 84 LHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 12/110 (10%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
K DG+TPLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+
Sbjct: 43 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
Query: 264 RDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSN 313
++ +D DG LH RE + I E L G N
Sbjct: 102 AGADVNAKDKDGYTPLHL-----------AAREGHLEIVEVLLKAGADVN 140
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 88
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAA 121
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 68.2 bits (165), Expect = 1e-11, Method: Composition-based stats.
Identities = 44/130 (33%), Positives = 70/130 (53%), Gaps = 4/130 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L+ NG +VN DN TP+H A G EI +LL H ++ + GF L+ A +
Sbjct: 32 ILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKH-GADVDAADVYGFTPLHLAAMT 90
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G++++ E +L ++ T G TPLH+A H+EIVE+L+ KY ++NA D +
Sbjct: 91 GHLEIVEVLLKYGADVNAFDMT--GSTPLHLAADEGHLEIVEVLL-KYGADVNAQDKFGK 147
Query: 244 TPLMAAVGQG 253
T ++ G
Sbjct: 148 TAFDISIDNG 157
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 67/121 (55%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G L+ A + G++++ E +L ++ GFTP
Sbjct: 28 DEVRILIANGADVNAV--DNTGLTPLHLAAVSGHLEIVEVLLKHGADVDAADVY--GFTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ KY ++NA D+ TPL A +G ++ L+ ++ Q
Sbjct: 84 LHLAAMTGHLEIVEVLL-KYGADVNAFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 47.4 bits (111), Expect = 2e-05, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A + H+EIVE+L+ K+ +++A D+ TPL A G ++ L+
Sbjct: 47 GLTPLHLAAVSGHLEIVEVLL-KHGADVDAADVYGFTPLHLAAMTGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D+ G+ LH
Sbjct: 106 VNAFDMTGSTPLHL 119
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G T LH AA + +++
Sbjct: 49 TPLHLAAVSGHLEIVEVLLKHGADVDAADVYGFTPLHLAAMTGHLEIVEV 98
Score = 30.0 bits (66), Expect = 3.7, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAAMTGHLEIVEVLLKYGADVNAFDMTGSTPLHLAA 121
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 67.8 bits (164), Expect = 2e-11, Method: Composition-based stats.
Identities = 50/137 (36%), Positives = 72/137 (52%), Gaps = 4/137 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL NG +VN D++ TP+H A G +E+ LLLS + ++S G L+ A G
Sbjct: 23 LLENGADVNASDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENG 81
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ +V + L L++ K SDG TPLH+A N H E+V+LL+ + + N D RT
Sbjct: 82 HKEVVK--LLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQ-GADPNTSDSDGRT 138
Query: 245 PLMAAVGQGQTSVINYL 261
PL A G V+ L
Sbjct: 139 PLDLAREHGNEEVVKLL 155
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
SDG TPLH+A N H E+V+LL+ + + NA D +TPL A G V+ L+ +
Sbjct: 35 SDGKTPLHLAAENGHKEVVKLLLSQ-GADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQG 93
Query: 266 VALDIQDIDGNGLLHF 281
+ +D DG LH
Sbjct: 94 ADPNAKDSDGKTPLHL 109
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
KT LH+ A G E + +LL++GA D G T LH AA + +++
Sbjct: 38 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 88
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
KT LH+ A G E + +LL++GA D G T LH AA + +++
Sbjct: 71 KTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKL 121
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 23/48 (47%)
Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
++NA D +TPL A G V+ L+ + + +D DG LH
Sbjct: 29 DVNASDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHL 76
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 67.0 bits (162), Expect = 3e-11, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 76/139 (54%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D TP+H A G EI +LL + +VN + ++ G L+ A
Sbjct: 32 ILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAW--DNYGATPLHLAAD 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ K +GFTPLH+A ++ H+EIVE+L+ KY ++NA D
Sbjct: 90 NGHLEIVEVLLKHGADVNA--KDYEGFTPLHLAAYDGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A H+EIVE+L+ KY ++NA D TPL A G ++ L+
Sbjct: 47 GHTPLHLAAKTGHLEIVEVLL-KYGADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 106 VNAKDYEGFTPLHL 119
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G T LH AA+ + +++
Sbjct: 82 TPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEV 131
Score = 30.4 bits (67), Expect = 3.4, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D+ G T LH AA
Sbjct: 49 TPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAA 88
Score = 29.3 bits (64), Expect = 7.3, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ AY G +E + +LL GA V D G TA + D +I
Sbjct: 115 TPLHLAAYDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 65.9 bits (159), Expect = 6e-11, Method: Composition-based stats.
Identities = 45/150 (30%), Positives = 67/150 (44%), Gaps = 39/150 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+ TP+H A G EI +LL H +VN
Sbjct: 32 ILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVN----------------- 74
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
+ +DG+TPLH+A N H+EIVE+L+ KY ++NA D
Sbjct: 75 --------------------ARDTDGWTPLHLAADNGHLEIVEVLL-KYGADVNAQDAYG 113
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
TPL A +G ++ L+ ++ QD
Sbjct: 114 LTPLHLAADRGHLEIVEVLLKHGADVNAQD 143
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V D G TPLH+A + H EIVE+L+ K+ ++NA D TPL
Sbjct: 28 DEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLL-KHGADVNARDTDGWTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G ++ L+ ++ QD G LH
Sbjct: 87 AADNGHLEIVEVLLKYGADVNAQDAYGLTPLHL 119
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 48/191 (25%), Positives = 72/191 (37%), Gaps = 45/191 (23%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGANRSRKHIY 66
A G +E+ IL+A GA V DD G T LH AA+ P+ +++ H + N +
Sbjct: 22 ARAGQDDEVRILMANGADVNAHDDQGSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGW 81
Query: 67 KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLL 126
H D E +L+K
Sbjct: 82 TPLHLAA----------------------------------DNGHLEIVEVLLKY----- 102
Query: 127 RNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGN 185
G +VN QD TP+H A +G EI +LL H +VN ++ G + ++ GN
Sbjct: 103 --GADVNAQDAYGLTPLHLAADRGHLEIVEVLLKHGADVN--AQDKFGKTAFDISIDNGN 158
Query: 186 MKVTEKILALN 196
+ E + LN
Sbjct: 159 EDLAEILQKLN 169
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A+ G E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAA 88
Score = 28.9 bits (63), Expect = 8.3, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAA 121
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 65.5 bits (158), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D TP+H V G E I++LL +VN + G+ L+ A
Sbjct: 32 ILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVN--ASDKSGWTPLHLAAY 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
RG++++ E +L ++ + G+TPLH+A + H+EIVE+L+ KY ++NA D
Sbjct: 90 RGHLEIVEVLLKYGADVNAM--DYQGYTPLHLAAEDGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/121 (29%), Positives = 68/121 (56%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN + G L+ V G++++ E +L ++ K+ G+TP
Sbjct: 28 DEVRILMANGADVNA--NDWFGITPLHLVVNNGHLEIIEVLLKYAADVNASDKS--GWTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A + H+EIVE+L+ KY ++NA+D + TPL A G ++ L+ ++ Q
Sbjct: 84 LHLAAYRGHLEIVEVLL-KYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+ N H+EI+E+L+ KY ++NA D TPL A +G ++ L+
Sbjct: 47 GITPLHLVVNNGHLEIIEVLL-KYAADVNASDKSGWTPLHLAAYRGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D G LH
Sbjct: 106 VNAMDYQGYTPLHL 119
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ AY+G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAAYRGHLEIVEVLLKYGADVNAMDYQGYTPLHLAA 121
Score = 32.3 bits (72), Expect = 0.85, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+ G +VN D TP+H A G EI +LL + +VN ++ G + ++
Sbjct: 98 VLLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 30.0 bits (66), Expect = 4.6, Method: Composition-based stats.
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH++ G +E + +LL A V D +G T LH AA+ + +++
Sbjct: 49 TPLHLVVNNGHLEIIEVLLKYAADVNASDKSGWTPLHLAAYRGHLEIVEV 98
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D TP+H A G EI ++LL + +VN ++S G L+ A
Sbjct: 32 ILMANGADVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNA--KDSLGVTPLHLAAR 89
Query: 183 RGNMKVTEKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
RG++++ E +L +N A V + S GFTPLH+A H+EIVE+L+ K ++NA D
Sbjct: 90 RGHLEIVEVLL---KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLL-KNGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFT 210
+E+++L+ + +VN + G+ L+ A G++++ E +L +N A V K S G T
Sbjct: 28 DEVRILMANGADVNA--RDFTGWTPLHLAAHFGHLEIVEVLL---KNGADVNAKDSLGVT 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
PLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+ ++
Sbjct: 83 PLHLAARRGHLEIVEVLL-KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVNA 141
Query: 271 QD 272
QD
Sbjct: 142 QD 143
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G+TPLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+
Sbjct: 47 GWTPLHLAAHFGHLEIVEVLL-KNGADVNAKDSLGVTPLHLAARRGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D G LH
Sbjct: 106 VNASDSHGFTPLHL 119
Score = 38.9 bits (89), Expect = 0.010, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D++ TP+H A +G EI ++LL + +VN ++ G + ++
Sbjct: 98 VLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLKNGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 31.6 bits (70), Expect = 1.6, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAA 121
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A+ G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAA 88
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/139 (33%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L+ NG +VN DN TP+H A G EI +LL H ++ + G+ L+ A
Sbjct: 32 ILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKH-GADVDASDVFGYTPLHLAAYW 90
Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L +N A V SDG TPLH+A ++EIVE+L+ K+ ++NA D
Sbjct: 91 GHLEIVEVLL---KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 48.9 bits (115), Expect = 9e-06, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A ++ H+EIVE+L+ K+ +++A D+ TPL A G ++ L+
Sbjct: 47 GTTPLHLAAYSGHLEIVEVLL-KHGADVDASDVFGYTPLHLAAYWGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D DG LH
Sbjct: 106 VNAMDSDGMTPLHL 119
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 49/191 (25%), Positives = 76/191 (39%), Gaps = 45/191 (23%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ-INSHVSGANRSRKHIY 66
A G +E+ IL+A GA V D+ G T LH AA+ + ++ + H + + S Y
Sbjct: 22 ARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVFGY 81
Query: 67 KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQDFVLL 126
H +L VE VLL
Sbjct: 82 TPLHLAAYW------GHLEIVE-----------------------------------VLL 100
Query: 127 RNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGN 185
+NG +VN D++ TP+H A G+ EI +LL H +VN ++ G + ++ GN
Sbjct: 101 KNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLKHGADVN--AQDKFGKTAFDISIDNGN 158
Query: 186 MKVTEKILALN 196
+ E + LN
Sbjct: 159 EDLAEILQKLN 169
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ AY G +E + +LL GA V D G T LH AA+ + +++
Sbjct: 49 TPLHLAAYSGHLEIVEVLLKHGADVDASDVFGYTPLHLAAYWGHLEIVEV 98
Score = 33.1 bits (74), Expect = 0.47, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ AY G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAA 121
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 64.3 bits (155), Expect = 2e-10, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 74/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D DTP+H A G EI ++LL + +VN + G L+ A
Sbjct: 32 ILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVNAL--DFSGSTPLHLAAK 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
RG++++ E +L ++ + G TPLH+A H+EIVE+L+ KY ++NA D
Sbjct: 90 RGHLEIVEVLLKYGADVNA--DDTIGSTPLHLAADTGHLEIVEVLL-KYGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A H+EIVE+L+ K ++NALD TPL A +G ++ L+
Sbjct: 47 GDTPLHLAARVGHLEIVEVLL-KNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D G+ LH
Sbjct: 106 VNADDTIGSTPLHL 119
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAA 121
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 17/34 (50%), Positives = 20/34 (58%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
A G +E+ IL+A GA V D GDT LH AA
Sbjct: 22 ARAGQDDEVRILMANGADVNAEDTYGDTPLHLAA 55
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D +G T LH AA
Sbjct: 49 TPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAA 88
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 63.9 bits (154), Expect = 3e-10, Method: Composition-based stats.
Identities = 49/140 (35%), Positives = 78/140 (55%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+ TP+H A G EI ++LL + +VN ++S G L+ A
Sbjct: 32 ILMANGADVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNA--DDSLGVTPLHLAAD 89
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
RG+++V E +L +N A V +GFTPLH+A H+EIVE+L+ K+ ++NA D
Sbjct: 90 RGHLEVVEVLL---KNGADVNANDHNGFTPLHLAANIGHLEIVEVLL-KHGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFT 210
+E+++L+ + +VN + G+ L+ A G++++ E +L +N A V S G T
Sbjct: 28 DEVRILMANGADVNA--SDHVGWTPLHLAAYFGHLEIVEVLL---KNGADVNADDSLGVT 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
PLH+A H+E+VE+L+ K ++NA D TPL A G ++ L+ ++
Sbjct: 83 PLHLAADRGHLEVVEVLL-KNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNA 141
Query: 271 QD 272
QD
Sbjct: 142 QD 143
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G+TPLH+A + H+EIVE+L+ K ++NA D TPL A +G V+ L+
Sbjct: 47 GWTPLHLAAYFGHLEIVEVLL-KNGADVNADDSLGVTPLHLAADRGHLEVVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ D +G LH
Sbjct: 106 VNANDHNGFTPLHL 119
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D+N TP+H A G EI +LL H +VN ++ G + ++
Sbjct: 98 VLLKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 33.1 bits (74), Expect = 0.55, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ AY G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAA 88
Score = 30.0 bits (66), Expect = 3.6, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 82 TPLHLAADRGHLEVVEVLLKNGADVNANDHNGFTPLHLAA 121
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 63.5 bits (153), Expect = 3e-10, Method: Composition-based stats.
Identities = 44/139 (31%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN DN+ TP+H A + G EI ++LL + +VN + G L+ A
Sbjct: 32 ILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLLKNGADVN--ASDLTGITPLHLAAA 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ +DG TPLH+A H+EIVE+L+ K+ ++NA D
Sbjct: 90 TGHLEIVEVLLKHGADVNAY--DNDGHTPLHLAAKYGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 57.8 bits (138), Expect = 2e-08, Method: Composition-based stats.
Identities = 35/93 (37%), Positives = 52/93 (55%), Gaps = 2/93 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V T +DG+TPLH+A N H+EIVE+L+ K ++NA DL TPL
Sbjct: 28 DEVRILMANGADVNATDNDGYTPLHLAASNGHLEIVEVLL-KNGADVNASDLTGITPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G ++ L+ ++ D DG+ LH
Sbjct: 87 AAATGHLEIVEVLLKHGADVNAYDNDGHTPLHL 119
Score = 56.6 bits (135), Expect = 4e-08, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 67/122 (54%), Gaps = 7/122 (5%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS-DGFT 210
+E+++L+ + +VN ++ G+ L+ A G++++ E +L +N A V + G T
Sbjct: 28 DEVRILMANGADVNA--TDNDGYTPLHLAASNGHLEIVEVLL---KNGADVNASDLTGIT 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
PLH+A H+EIVE+L+ K+ ++NA D TPL A G ++ L+ ++
Sbjct: 83 PLHLAAATGHLEIVEVLL-KHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKHGADVNA 141
Query: 271 QD 272
QD
Sbjct: 142 QD 143
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D+ G T LH AA
Sbjct: 82 TPLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAA 121
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 22/40 (55%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAA 88
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 62.8 bits (151), Expect = 6e-10, Method: Composition-based stats.
Identities = 48/140 (34%), Positives = 76/140 (54%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D TP+H A G EI ++LL + +VN Y ++ G L+ A
Sbjct: 32 ILMANGADVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAY--DTLGSTPLHLAAH 89
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G++++ E +L +N A V K +G TPLH+A H+EIVE+L+ KY ++NA D
Sbjct: 90 FGHLEIVEVLL---KNGADVNAKDDNGITPLHLAANRGHLEIVEVLL-KYGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 146 GKTAFDISINNGNEDLAEIL 165
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 37/122 (30%), Positives = 65/122 (53%), Gaps = 7/122 (5%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD-GFT 210
+E+++L+ + +VN + G+ L+ A G++++ E +L +N A V G T
Sbjct: 28 DEVRILMANGADVNA--ADVVGWTPLHLAAYWGHLEIVEVLL---KNGADVNAYDTLGST 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
PLH+A H+EIVE+L+ K ++NA D TPL A +G ++ L+ ++
Sbjct: 83 PLHLAAHFGHLEIVEVLL-KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVNA 141
Query: 271 QD 272
QD
Sbjct: 142 QD 143
Score = 47.0 bits (110), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 41/74 (55%), Gaps = 1/74 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G+TPLH+A + H+EIVE+L+ K ++NA D TPL A G ++ L+
Sbjct: 47 GWTPLHLAAYWGHLEIVEVLL-KNGADVNAYDTLGSTPLHLAAHFGHLEIVEVLLKNGAD 105
Query: 268 LDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 106 VNAKDDNGITPLHL 119
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN +D+N TP+H A +G EI +LL + +VN ++ G + ++
Sbjct: 98 VLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVLLKYGADVN--AQDKFGKTAFDISIN 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 21/44 (47%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGN 44
T LH+ AY G +E + +LL GA V D G T LH AA FG+
Sbjct: 49 TPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGH 92
Score = 33.9 bits (76), Expect = 0.30, Method: Composition-based stats.
Identities = 19/40 (47%), Positives = 24/40 (60%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A+ G +E + +LL GA V DD G T LH AA
Sbjct: 82 TPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAA 121
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 61.6 bits (148), Expect = 1e-09, Method: Composition-based stats.
Identities = 43/126 (34%), Positives = 68/126 (53%), Gaps = 6/126 (4%)
Query: 138 NQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
N TP+H A G E ++LLL + +VN ++ G L+ A G+++V + +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 197 RNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS 256
++ K +G TPLH+A N H+E+V+LL+E ++NA D RTPL A G
Sbjct: 59 ADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLE 115
Query: 257 VINYLM 262
V+ L+
Sbjct: 116 VVKLLL 121
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 38/107 (35%), Positives = 62/107 (57%), Gaps = 5/107 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+LL G +VN +D N TP+H A G E ++LLL + +VN ++ G L+ A
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAAR 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
G+++V + +L ++ K +G TPLH+A N H+E+V+LL+E
Sbjct: 78 NGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLE 122
Score = 54.3 bits (129), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/105 (32%), Positives = 56/105 (53%), Gaps = 3/105 (2%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L+ A G+++V + +L ++ K +G TPLH+A N H+E+V+LL+E ++N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVN 62
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A D RTPL A G V+ L+ ++ +D +G LH
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHL 107
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 60 DVNAKDKNGRTPLHL 74
Score = 34.7 bits (78), Expect = 0.18, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 62/159 (38%), Gaps = 40/159 (25%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
+T LH+ A G +E + +LL GA V D G T LH AA + +++ +GA+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLE-AGADV 61
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIK 120
+ K+++ R +L V+
Sbjct: 62 NA----KDKNGRTPLHLAARNGHLEVVK-------------------------------- 85
Query: 121 QDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
+LL G +VN +D N TP+H A G E+ LLL
Sbjct: 86 ---LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL 121
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D + TP+H A G EI +LL H +VN + G L+ A L
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ V D TPLH+A H+EIVE+L+ K+ ++NA D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGD--TPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G L+ A G++++ E +L ++ + G TP
Sbjct: 28 DEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIXGSTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K+ ++NA+D TPL A G ++ L+ ++ Q
Sbjct: 84 LHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 49.3 bits (116), Expect = 6e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V T + G TPLH+A H+EIVE+L+ K+ ++NA+D+ TPL
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIXGSTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI 284
A G ++ L+ ++ D G+ LH I
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL++G +VN D DTP+H A G EI +LL H +VN ++ G + ++
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D GDT LH AA + +++
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAF 42
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIXGSTPLHLAAL 89
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 72/139 (51%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D + TP+H A G EI +LL H +VN + G L+ A L
Sbjct: 32 ILMANGADVNATDASGLTPLHLAATYGHLEIVEVLLKHGADVNAI--DIMGSTPLHLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ V D TPLH+A H+EIVE+L+ K+ ++NA D
Sbjct: 90 IGHLEIVEVLLKHGADVNAVDTWGD--TPLHLAAIMGHLEIVEVLL-KHGADVNAQDKFG 146
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 147 KTAFDISIDNGNEDLAEIL 165
Score = 53.9 bits (128), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/121 (28%), Positives = 65/121 (53%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G L+ A G++++ E +L ++ + G TP
Sbjct: 28 DEVRILMANGADVNA--TDASGLTPLHLAATYGHLEIVEVLLKHGADVNAIDIM--GSTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A H+EIVE+L+ K+ ++NA+D TPL A G ++ L+ ++ Q
Sbjct: 84 LHLAALIGHLEIVEVLL-KHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 49.3 bits (116), Expect = 7e-06, Method: Composition-based stats.
Identities = 32/96 (33%), Positives = 51/96 (53%), Gaps = 2/96 (2%)
Query: 190 EKILALNRNLATVPKT-SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V T + G TPLH+A H+EIVE+L+ K+ ++NA+D+ TPL
Sbjct: 28 DEVRILMANGADVNATDASGLTPLHLAATYGHLEIVEVLL-KHGADVNAIDIMGSTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFI 284
A G ++ L+ ++ D G+ LH I
Sbjct: 87 AALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAI 122
Score = 37.7 bits (86), Expect = 0.020, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL++G +VN D DTP+H A G EI +LL H +VN ++ G + ++
Sbjct: 98 VLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 32.7 bits (73), Expect = 0.56, Method: Composition-based stats.
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D GDT LH AA + +++
Sbjct: 82 TPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEV 131
Score = 30.4 bits (67), Expect = 3.3, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAF 42
T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAATYGHLEIVEVLLKHGADVNAIDIMGSTPLHLAAL 89
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 35/273 (12%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVSG 57
T LHI A +G VE + LL + A G T LH AA K ++ ++H +
Sbjct: 115 TPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLERDAHPNA 174
Query: 58 ANR---SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAEC 114
A + + H+ H + K+ P P +P N + P
Sbjct: 175 AGKNGLTPLHV-AVHHNNLDIVKLLLPRG---GSPHSPAWN-GYTPLH------------ 217
Query: 115 SGILIKQDFV-----LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
I KQ+ V LL+ G + N + TP+H A +G E+ LLLS + N L
Sbjct: 218 --IAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLS-KQANGNLG 274
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
N G L+ G++ V + ++ + T G+TPLHVA +I++V+ L++
Sbjct: 275 NKSGLTPLHLVAQEGHVPVADVLI--KHGVMVDATTRMGYTPLHVASHYGNIKLVKFLLQ 332
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
++ ++NA +PL A QG T ++ L+
Sbjct: 333 -HQADVNAKTKLGYSPLHQAAQQGHTDIVTLLL 364
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 80/190 (42%), Gaps = 17/190 (8%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL+N VN + + TP+H A G + LLL + N L + G L+ A G
Sbjct: 66 LLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKLLLEN-NANPNLATTAGHTPLHIAAREG 124
Query: 185 NMKVTEKILAL-NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
++ E +LAL + + T GFTPLHVA + + ELL+E+ + NA
Sbjct: 125 HV---ETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLLER-DAHPNAAGKNGL 180
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE 303
TPL AV ++ L+ R + +G LH ++ V +
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHI-----------AAKQNQVEVAR 229
Query: 304 EYLSVGGPSN 313
L GG +N
Sbjct: 230 SLLQYGGSAN 239
Score = 53.1 bits (126), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 87/218 (39%), Gaps = 46/218 (21%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL N N N+ TP+H A +G E L LL E + KGF L+ A
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLE-KEASQACMTKKGFTPLHVAAKY 156
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK------------- 230
G ++V E L L R+ +G TPLHVA +++++IV+LL+ +
Sbjct: 157 GKVRVAE--LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYT 214
Query: 231 -------------------YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
Y + NA ++ TPL A +G ++ L+ + ++
Sbjct: 215 PLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNLG 274
Query: 272 DIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVG 309
+ G LH + +E VP+ + + G
Sbjct: 275 NKSGLTPLHL-----------VAQEGHVPVADVLIKHG 301
Score = 45.8 bits (107), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 101/262 (38%), Gaps = 48/262 (18%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
T LH+ + ++ + +LL RG + P G T LH AA N+ + + G
Sbjct: 181 TPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQYGG---- 236
Query: 62 RKHIYKERHRTVTTEKVQ--RPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
+ E VQ P +L E M+ +
Sbjct: 237 ----------SANAESVQGVTPLHLAAQEGHAEMVAL----------------------- 263
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
LL N N+ + + TP+H +G + +L+ H V + G+ L+
Sbjct: 264 -----LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMGYTPLHV 317
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
A GN+K+ + +L ++ KT G++PLH A H +IV LL+ K + N +
Sbjct: 318 ASHYGNIKLVKFLLQHQADVNA--KTKLGYSPLHQAAQQGHTDIVTLLL-KNGASPNEVS 374
Query: 240 LKKRTPLMAAVGQGQTSVINYL 261
TPL A G SV + L
Sbjct: 375 SDGTTPLAIAKRLGYISVTDVL 396
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/161 (27%), Positives = 67/161 (41%), Gaps = 10/161 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL---SHPEVNLYLENSKGFNILNYA 180
+LL + N N TP+H AV +I LLL P + G+ L+ A
Sbjct: 164 LLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHSPAW----NGYTPLHIA 219
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
+ ++V +L + ++ G TPLH+A H E+V LL+ K + N N +
Sbjct: 220 AKQNQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNK 276
Query: 241 KKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL +G V + L+ V +D G LH
Sbjct: 277 SGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 209 FTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVAL 268
TPLHVA F H+ IV+ L+++ + N ++K TPL A G T V YL+ +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQR-GASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKV 73
Query: 269 DIQDIDGNGLLH 280
+ + D LH
Sbjct: 74 NAKAKDDQTPLH 85
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 59.7 bits (143), Expect = 5e-09, Method: Composition-based stats.
Identities = 46/140 (32%), Positives = 74/140 (52%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A G EI ++LL + +VN + G L A L
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAV--DHAGMTPLRLAAL 89
Query: 183 RGNMKVTEKILALNRNLATVPKTS-DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G++++ E +L +N A V +G TPLH+A H+EIVE+L+ K ++NA D
Sbjct: 90 FGHLEIVEVLL---KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KNGADVNAQDKF 145
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 146 GKTAFDISIDNGNEDLAEIL 165
Score = 55.8 bits (133), Expect = 7e-08, Method: Composition-based stats.
Identities = 35/121 (28%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN E++ G+ L+ A G++++ E +L ++ V G TP
Sbjct: 28 DEVRILMANGADVNA--EDASGWTPLHLAAFNGHLEIVEVLLKNGADVNAVDHA--GMTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
L +A H+EIVE+L+ K ++NA D++ TPL A G ++ L+ ++ Q
Sbjct: 84 LRLAALFGHLEIVEVLL-KNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVNAQ 142
Query: 272 D 272
D
Sbjct: 143 D 143
Score = 55.1 bits (131), Expect = 1e-07, Method: Composition-based stats.
Identities = 28/76 (36%), Positives = 45/76 (59%), Gaps = 1/76 (1%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
+ G+TPLH+A FN H+EIVE+L+ K ++NA+D TPL A G ++ L+
Sbjct: 45 ASGWTPLHLAAFNGHLEIVEVLL-KNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNG 103
Query: 266 VALDIQDIDGNGLLHF 281
++ D++G+ LH
Sbjct: 104 ADVNANDMEGHTPLHL 119
Score = 35.8 bits (81), Expect = 0.075, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 39/74 (52%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D TP+H A G EI ++LL + +VN ++ G + ++
Sbjct: 98 VLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLLKNGADVN--AQDKFGKTAFDISID 155
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 156 NGNEDLAEILQKLN 169
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGN 44
T LH+ A+ G +E + +LL GA V D AG T L AA FG+
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGH 92
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 25/44 (56%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
A G +E+ IL+A GA V D +G T LH AAF + +++
Sbjct: 22 ARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEV 65
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 42/139 (30%), Positives = 75/139 (53%), Gaps = 6/139 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG + N D+ TP+H A A G EI ++LL + +VN ++ G L+ A
Sbjct: 20 ILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAV--DTNGTTPLHLAAS 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G++++ E +L ++ K + G TPL++A + H+EIVE+L+ K+ ++NA D
Sbjct: 78 LGHLEIVEVLLKYGADVNA--KDATGITPLYLAAYWGHLEIVEVLL-KHGADVNAQDKFG 134
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 135 KTAFDISIDIGNEDLAEIL 153
Score = 55.8 bits (133), Expect = 8e-08, Method: Composition-based stats.
Identities = 39/122 (31%), Positives = 66/122 (54%), Gaps = 7/122 (5%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKT-SDGFT 210
+E+++L+ + + N Y + G L+ A G++++ E +L RN A V ++G T
Sbjct: 16 DEVRILMANGADANAY--DHYGRTPLHMAAAVGHLEIVEVLL---RNGADVNAVDTNGTT 70
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
PLH+A H+EIVE+L+ KY ++NA D TPL A G ++ L+ ++
Sbjct: 71 PLHLAASLGHLEIVEVLL-KYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKHGADVNA 129
Query: 271 QD 272
QD
Sbjct: 130 QD 131
Score = 42.7 bits (99), Expect = 6e-04, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A H+EIVE+L+ + ++NA+D TPL A G ++ L+
Sbjct: 35 GRTPLHMAAAVGHLEIVEVLL-RNGADVNAVDTNGTTPLHLAASLGHLEIVEVLLKYGAD 93
Query: 268 LDIQDIDG 275
++ +D G
Sbjct: 94 VNAKDATG 101
Score = 30.8 bits (68), Expect = 2.7, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 36 RTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAA 76
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G T L+ AA+ + +++
Sbjct: 70 TPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEV 119
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 52.4 bits (124), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
D + T +H A + G EI LL V + ++ G++ L+ A G ++ + +L
Sbjct: 38 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 96
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
+ V +G TPLH A + EI +L+E N +A D + T + A +G
Sbjct: 97 GAQVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNL 153
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
+I+ L+ + +IQD +GN LH ++ + + + IY E
Sbjct: 154 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 202
Score = 37.7 bits (86), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
LHI A G E + LL +GA V + G T LHYAA N+ + I + GAN K
Sbjct: 78 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAK 136
Query: 64 HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-SAECSGILIKQD 122
Y+ + NL + +L K + + +TP C +++
Sbjct: 137 DHYE----ATAMHRAAAKGNLKMIH---ILLYYKASTNIQDTEGNTPLHLACDEERVEEA 189
Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
+L+ G ++ I++ + TP+ VAKG
Sbjct: 190 KLLVSQGASIYIENKEEKTPLQ--VAKG 215
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVS 56
+T LH G E + LL G V DDAG + LH AA + + ++ + V+
Sbjct: 42 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 101
Query: 57 GANR---SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAE 113
N+ + H ++R + P + M A
Sbjct: 102 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH-------------RAA 148
Query: 114 CSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSK 172
G L K +LL + NIQD +TP+H A + E LL+S ++Y+EN +
Sbjct: 149 AKGNL-KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKE 205
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 77/169 (45%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
D + T +H A + G EI LL V + ++ G++ L+ A G ++ + +L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
+ V +G TPLH A + EI +L+E N +A D + T + A +G
Sbjct: 96 GAQVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYEATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
+I+ L+ + +IQD +GN LH ++ + + + IY E
Sbjct: 153 KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQGASIYIE 201
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 65/148 (43%), Gaps = 11/148 (7%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
LHI A G E + LL +GA V + G T LHYAA N+ + I + GAN K
Sbjct: 77 LHIAASAGRDEIVKALLGKGAQVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAK 135
Query: 64 HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-SAECSGILIKQD 122
Y+ + NL + +L K + + +TP C +++
Sbjct: 136 DHYE----ATAMHRAAAKGNLKMIH---ILLYYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
+L+ G ++ I++ + TP+ VAKG
Sbjct: 189 KLLVSQGASIYIENKEEKTPLQ--VAKG 214
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 44/179 (24%), Positives = 69/179 (38%), Gaps = 22/179 (12%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVS 56
+T LH G E + LL G V DDAG + LH AA + + ++ + V+
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLGKGAQVN 100
Query: 57 GANR---SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAE 113
N+ + H ++R + P + M A
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMH-------------RAA 147
Query: 114 CSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSK 172
G L K +LL + NIQD +TP+H A + E LL+S ++Y+EN +
Sbjct: 148 AKGNL-KMIHILLYYKASTNIQDTEGNTPLHLACDEERVEEAKLLVSQG-ASIYIENKE 204
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 51.2 bits (121), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/143 (29%), Positives = 69/143 (48%), Gaps = 4/143 (2%)
Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
+G VN+ + +P+H A G ++ LLL H N N+ L+ A +G+ +
Sbjct: 75 SGLGVNVTSQDGSSPLHVAALHGRADLIPLLLKHG-ANAGARNADQAVPLHLACQQGHFQ 133
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
V + + L+ N K G TPL AC H E+V LL++ + +INA + K T L
Sbjct: 134 VVKCL--LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQ-HGASINASNNKGNTALH 190
Query: 248 AAVGQGQTSVINYLMLRDVALDI 270
AV + V+ L+L ++ +
Sbjct: 191 EAVIEKHVFVVELLLLHGASVQV 213
Score = 48.9 bits (115), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
G + L+ A L G + +L N + +D PLH+AC H ++V+ L++
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGA--RNADQAVPLHLACQQGHFQVVKCLLDS-N 142
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
N DL TPL+ A G ++ L+ +++ + GN LH I+K+ +
Sbjct: 143 AKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHVF 199
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+LL++G N ++ +Q P+H A +G F+ ++ LL S+ + N ++ G L YA
Sbjct: 104 LLLKHGANAGARNADQAVPLHLACQQGHFQVVKCLLDSNAKPN--KKDLSGNTPLIYACS 161
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G+ ++ L L + + G T LH A H+ +VELL+ + ++ L+ ++
Sbjct: 162 GGHHELV--ALLLQHGASINASNNKGNTALHEAVIEKHVFVVELLL-LHGASVQVLNKRQ 218
Query: 243 RTPL 246
RT +
Sbjct: 219 RTAV 222
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 50.8 bits (120), Expect = 2e-06, Method: Composition-based stats.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 60 DVNAKDKNGRTPLHL 74
Score = 49.7 bits (117), Expect = 5e-06, Method: Composition-based stats.
Identities = 30/86 (34%), Positives = 48/86 (55%), Gaps = 3/86 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L+ A G+++V + +L ++ K +G TPLH+A N H+E+V+LL+E ++N
Sbjct: 6 LHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVN 62
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLM 262
A D RTPL A G V+ L+
Sbjct: 63 AKDKNGRTPLHLAARNGHLEVVKLLL 88
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 32/93 (34%), Positives = 53/93 (56%), Gaps = 5/93 (5%)
Query: 138 NQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
N TP+H A G E ++LLL + +VN ++ G L+ A G+++V + +L
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEAGADVNA--KDKNGRTPLHLAARNGHLEVVKLLLEAG 58
Query: 197 RNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
++ K +G TPLH+A N H+E+V+LL+E
Sbjct: 59 ADVNA--KDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 43
Score = 31.2 bits (69), Expect = 1.6, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 23/41 (56%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+T LH+ A G +E + +LL GA V D G T LH AA
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAA 76
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 50.8 bits (120), Expect = 3e-06, Method: Composition-based stats.
Identities = 32/110 (29%), Positives = 59/110 (53%), Gaps = 5/110 (4%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTP 211
+E+++L+ + +VN ++ G L A G++++ E +L ++ V GFTP
Sbjct: 28 DEVRILMANGADVNA--KDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAVDAI--GFTP 83
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
LH+A F H+EI E+L+ K+ ++NA D +T ++G G + L
Sbjct: 84 LHLAAFIGHLEIAEVLL-KHGADVNAQDKFGKTAFDISIGNGNEDLAEIL 132
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 24/69 (34%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
K G TPL++A + H+EIVE+L+ K ++NA+D TPL A G + L+
Sbjct: 43 KDEYGLTPLYLATAHGHLEIVEVLL-KNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
Query: 264 RDVALDIQD 272
++ QD
Sbjct: 102 HGADVNAQD 110
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 30/105 (28%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D TP++ A A G EI ++LL + +VN ++ GF L+ A
Sbjct: 32 ILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKNGADVNAV--DAIGFTPLHLAAF 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G++++ E +L ++ K G T ++ N + ++ E+L
Sbjct: 90 IGHLEIAEVLLKHGADVNAQDKF--GKTAFDISIGNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D TP+H A G EI +LL H +VN ++ G + ++
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVN--AQDKFGKTAFDISIG 122
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 123 NGNEDLAEILQKLN 136
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL---SHPEVNLYLENSKGFNILNYA 180
LL G +VN + N TP+H A +K EI ++LL ++P+ + + + ++ A
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA----MHRA 146
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
+GN+K+ +L +T + ++G TPLH+AC + +E + LV + +I +
Sbjct: 147 AAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENK 203
Query: 241 KKRTPLMAAVG 251
+++TPL A G
Sbjct: 204 EEKTPLQVAKG 214
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
D + T +H A + G EI LL V + ++ G++ L+ A G ++ + +L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
++ V +G TPLH A + EI +L+E N +A D T + A +G
Sbjct: 96 GAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
+++ L+ + +IQD +GN LH ++ + + IY E
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Score = 36.6 bits (83), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
LHI A G E + LL +GA V + G T LHYAA N+ + I + GAN K
Sbjct: 77 LHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAK 135
Query: 64 HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-SAECSGILIKQD 122
Y + NL V +L K + + +TP C +++
Sbjct: 136 DHYD----ATAMHRAAAKGNLKMVH---ILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
L+ G ++ I++ + TP+ VAKG
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQ--VAKG 214
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 83/204 (40%), Gaps = 30/204 (14%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVS 56
+T LH G E + LL G V DDAG + LH AA + ++ +HV+
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 57 GANRS-----RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPS 111
N++ K RH + ++ +N P+ + + D
Sbjct: 101 AVNQNGCTPLHYAASKNRHE-IAVMLLEGGAN-----PDA---------KDHYDATAMHR 145
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAV-AKGFEEIQLLLLSHPEVNLYLEN 170
A G L K +LL + NIQD +TP+H A + EE + L+ ++Y+EN
Sbjct: 146 AAAKGNL-KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIEN 202
Query: 171 SKGFNILNYAVLRGNMKVTEKILA 194
+ L V +G + + K LA
Sbjct: 203 KEEKTPLQ--VAKGGLGLILKRLA 224
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 70/131 (53%), Gaps = 10/131 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL---SHPEVNLYLENSKGFNILNYA 180
LL G +VN + N TP+H A +K EI ++LL ++P+ + + + ++ A
Sbjct: 91 ALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATA----MHRA 146
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
+GN+K+ +L +T + ++G TPLH+AC + +E + LV + +I +
Sbjct: 147 AAKGNLKMVHILLFYKA--STNIQDTEGNTPLHLACDEERVEEAKFLVTQ-GASIYIENK 203
Query: 241 KKRTPLMAAVG 251
+++TPL A G
Sbjct: 204 EEKTPLQVAKG 214
Score = 50.1 bits (118), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 76/169 (44%), Gaps = 4/169 (2%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
D + T +H A + G EI LL V + ++ G++ L+ A G ++ + +L
Sbjct: 37 DQDSRTALHWACSAGHTEIVEFLL-QLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVK 95
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
++ V +G TPLH A + EI +L+E N +A D T + A +G
Sbjct: 96 GAHVNAV--NQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAMHRAAAKGNL 152
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEE 304
+++ L+ + +IQD +GN LH ++ + + IY E
Sbjct: 153 KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYIE 201
Score = 36.2 bits (82), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 63/148 (42%), Gaps = 11/148 (7%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRSRK 63
LHI A G E + LL +GA V + G T LHYAA N+ + I + GAN K
Sbjct: 77 LHIAASAGRDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHE-IAVMLLEGGANPDAK 135
Query: 64 HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-SAECSGILIKQD 122
Y + NL V +L K + + +TP C +++
Sbjct: 136 DHYD----ATAMHRAAAKGNLKMVH---ILLFYKASTNIQDTEGNTPLHLACDEERVEEA 188
Query: 123 FVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
L+ G ++ I++ + TP+ VAKG
Sbjct: 189 KFLVTQGASIYIENKEEKTPLQ--VAKG 214
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 52/204 (25%), Positives = 84/204 (41%), Gaps = 30/204 (14%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI----NSHVS 56
+T LH G E + LL G V DDAG + LH AA + + ++ +HV+
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGRDEIVKALLVKGAHVN 100
Query: 57 GANRS-----RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPS 111
N++ K RH + ++ +N P+ + + D
Sbjct: 101 AVNQNGCTPLHYAASKNRHE-IAVMLLEGGAN-----PDA---------KDHYDATAMHR 145
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAV-AKGFEEIQLLLLSHPEVNLYLEN 170
A G L K +LL + NIQD +TP+H A + EE + L+ ++Y+EN
Sbjct: 146 AAAKGNL-KMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQ--GASIYIEN 202
Query: 171 SKGFNILNYAVLRGNMKVTEKILA 194
+ L V +G + + K LA
Sbjct: 203 KEEKTPLQ--VAKGGLGLILKRLA 224
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 50.1 bits (118), Expect = 4e-06, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A NDH+EIVE+L+ K ++NA+D TPL G ++ L+
Sbjct: 47 GLTPLHLAAMNDHLEIVEVLL-KNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGAD 105
Query: 268 LDIQD 272
++ QD
Sbjct: 106 VNAQD 110
Score = 37.7 bits (86), Expect = 0.022, Method: Composition-based stats.
Identities = 34/138 (24%), Positives = 55/138 (39%), Gaps = 37/138 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L+ NG +VN +D TP+H A EI V + L+N N ++
Sbjct: 32 ILMANGADVNAEDKVGLTPLHLAAMNDHLEI---------VEVLLKNGADVNAID----- 77
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ G TPLH+ H+EIVE+L+ K+ ++NA D +
Sbjct: 78 ----------------------AIGETPLHLVAMYGHLEIVEVLL-KHGADVNAQDKFGK 114
Query: 244 TPLMAAVGQGQTSVINYL 261
T ++ G + L
Sbjct: 115 TAFDISIDNGNEDLAEIL 132
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D +TP+H G EI +LL H +VN ++ G + ++
Sbjct: 65 VLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 122
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 123 NGNEDLAEILQKLN 136
>pdb|3F6Q|A Chain A, Crystal Structure Of Integrin-Linked Kinase Ankyrin Repeat
Domain In Complex With Pinch1 Lim1 Domain
pdb|3IXE|A Chain A, Structural Basis Of Competition Between Pinch1 And Pinch2
For Binding To The Ankyrin Repeat Domain Of
Integrin-Linked Kinase
Length = 179
Score = 48.9 bits (115), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC 216
L L + E +L + GF+ L++A G V E ++ + + + D TPLH+A
Sbjct: 23 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 80
Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
+ H +IV+ L++ YK +INA++ PL A GQ V +D+ N
Sbjct: 81 SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV------------AEDLVAN 127
Query: 277 GLLHFLFIKKNFYKTPITREKSVPIYE 303
G L + I + + P+ + K+ P+ E
Sbjct: 128 GAL--VSICNKYGEMPVDKAKA-PLRE 151
Score = 37.0 bits (84), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ G +N+ + DTP+H A + G +I Q LL ++N N G L+YA
Sbjct: 57 MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV--NEHGNVPLHYACF 114
Query: 183 RGNMKVTEKILA 194
G +V E ++A
Sbjct: 115 WGQDQVAEDLVA 126
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V D G TPLH+A H+EIVE+L+ K+ ++NA D+ RTPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNARDIWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
A G ++ L+ ++ QD
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQD 110
Score = 45.1 bits (105), Expect = 1e-04, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 39/139 (28%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+ TP+H A +G EI +LL H +VN
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNA---------------- 75
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
R++ G TPLH+A H+EIVE+L+E Y ++NA D
Sbjct: 76 --------------RDIW-------GRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFG 113
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 14 EELNILLARGACVYYPDDAGDTALHYAA 41
+E+ IL+A GA V DDAG T LH AA
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAA 55
Score = 30.0 bits (66), Expect = 3.8, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNARDIWGRTPLHLAA 88
>pdb|4AUQ|B Chain B, Structure Of Birc7-Ubch5b-Ub Complex.
pdb|4AUQ|E Chain E, Structure Of Birc7-Ubch5b-Ub Complex
Length = 62
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 38/63 (60%), Gaps = 4/63 (6%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTLKFCHMCRKLIEQRINISRA 526
+E+++ ++E TC +C++R + +F+ CGH C CA L+ C +CR + R+ R
Sbjct: 3 VEAQLRRLQEERTCKVCLDRAVSIVFVPCGHLVCAECAPGLQLCPICRAPVRSRV---RT 59
Query: 527 FVS 529
F+S
Sbjct: 60 FLS 62
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTT 446
C VC + V+ V + PC H V C EC+ ++ C +C+ + RV T
Sbjct: 16 CKVCLDRAVSIVFV-PCGHLV-CAECAPGLQLCPICRAPVRSRVRT 59
>pdb|3UTM|A Chain A, Crystal Structure Of A Mouse Tankyrase-Axin Complex
pdb|3UTM|B Chain B, Crystal Structure Of A Mouse Tankyrase-Axin Complex
Length = 351
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 3/118 (2%)
Query: 145 DAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPK 204
+A G EE + LL+ VN + + + L+ A +++ + L L K
Sbjct: 30 EAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQ--LLLQHGADVHAK 87
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
G PLH AC H E+ ELL+ K+ +NA+DL + TPL A + + V + L+
Sbjct: 88 DKGGLVPLHNACSYGHYEVTELLL-KHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL 144
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/181 (28%), Positives = 77/181 (42%), Gaps = 28/181 (15%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH--------------------PE 163
+LL++G VN D Q TP+H+A +K E+ LLLSH PE
Sbjct: 109 LLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPE 168
Query: 164 VNLYLENS-KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-- 220
+ L KG ++L A ++ +K LAL P++ + T LH A + H
Sbjct: 169 LRERLTYEFKGHSLLQ-AAREADLAKVKKTLALEIINFKQPQSHE--TALHCAVASLHPK 225
Query: 221 -IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
++ ELL+ K N+N + TPL A + V+ L ++ D G L
Sbjct: 226 RKQVAELLLRK-GANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNALDSLGQTAL 284
Query: 280 H 280
H
Sbjct: 285 H 285
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 93/224 (41%), Gaps = 20/224 (8%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK-----------PDAIQIN 52
LH G E +LL GACV D T LH AA N+ D +N
Sbjct: 95 LHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLLSHGADPTLVN 154
Query: 53 SH-VSGANRSRKHIYKER----HRTVTTEKVQRPSNLPKVEPETPMLNMKFI-PRMNEDM 106
H S + + +ER + + + R ++L KV+ + + F P+ +E
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETA 214
Query: 107 LDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNL 166
L A + +LLR G NVN ++ + TP+H A + ++ +L H +
Sbjct: 215 LHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHG-AKM 273
Query: 167 YLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFT 210
+S G L+ A L G+++ +L+ + + + + GFT
Sbjct: 274 NALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSII--SLQGFT 315
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+LL++G +V+ +D P+H+A + G E+ LLL H
Sbjct: 76 LLLQHGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH 113
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 48.5 bits (114), Expect = 1e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V D G TPLH+A H+EIVE+L+ K+ ++NA D+ RTPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDIWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
A G ++ L+ ++ QD
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQD 110
Score = 45.8 bits (107), Expect = 8e-05, Method: Composition-based stats.
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 43/141 (30%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+ TP+H A +G EI +LL H +VN
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN----------------- 74
Query: 183 RGNMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
SD G TPLH+A H+EIVE+L+E Y ++NA D
Sbjct: 75 ----------------------ASDIWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDK 111
Query: 241 KKRTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 112 FGKTAFDISIDNGNEDLAEIL 132
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 14 EELNILLARGACVYYPDDAGDTALHYAA 41
+E+ IL+A GA V DDAG T LH AA
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAA 55
Score = 30.8 bits (68), Expect = 2.6, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDIWGRTPLHLAA 88
>pdb|1S70|B Chain B, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 299
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 87/211 (41%), Gaps = 40/211 (18%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV--- 181
L+ NG N+N DN P+H A + G+ +I L+S ++ NS+G L+ A
Sbjct: 92 LVENGANINQPDNEGWIPLHAAASCGYLDIAEYLISQG-AHVGAVNSEGDTPLDIAEEEA 150
Query: 182 ---------------LRGNMKVTEKIL------ALNR-NLATVPKTSDGFTPLHVACFND 219
+ K E+I+ LN ++ V G T LHVA
Sbjct: 151 MEELLQNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKG 210
Query: 220 HIEIVELLVE-KYKVNINALDLKKRTPLMAAVGQGQTSVINYLM-----------LRDVA 267
+ E+++LL++ +Y VNI D TPL AA G+ L+ + A
Sbjct: 211 YTEVLKLLIQARYDVNIK--DYDGWTPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTA 268
Query: 268 LDIQDIDGNGLLHFLFIKKNFYKTPITREKS 298
D+ D D G L L K+N + +KS
Sbjct: 269 FDVADEDILGYLEELQKKQNLLHSEKREKKS 299
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 2/75 (2%)
Query: 189 TEKILALNRNLATVPKTS-DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
TE++L L A + + DG T LH AC +D++++V+ LVE NIN D + PL
Sbjct: 53 TEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLH 111
Query: 248 AAVGQGQTSVINYLM 262
AA G + YL+
Sbjct: 112 AAASCGYLDIAEYLI 126
Score = 29.3 bits (64), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 25/50 (50%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A +G E L +L+ V D G T LH AA K +A +I
Sbjct: 201 TALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRI 250
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 48.1 bits (113), Expect = 2e-05, Method: Composition-based stats.
Identities = 34/111 (30%), Positives = 62/111 (55%), Gaps = 7/111 (6%)
Query: 152 EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD-GFT 210
+E+++L + +VN + G L+ A + G++++ E +L +N A V T + G T
Sbjct: 28 DEVRILTANGADVNA--NDYWGHTPLHLAAMLGHLEIVEVLL---KNGADVNATGNTGRT 82
Query: 211 PLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
PLH+A + DH+EIVE+L+ K+ ++NA D +T ++ G + L
Sbjct: 83 PLHLAAWADHLEIVEVLL-KHGADVNAQDKFGKTAFDISIDNGNEDLAEIL 132
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A H+EIVE+L+ K ++NA RTPL A ++ L+
Sbjct: 47 GHTPLHLAAMLGHLEIVEVLL-KNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGAD 105
Query: 268 LDIQD 272
++ QD
Sbjct: 106 VNAQD 110
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN N TP+H A EI +LL H +VN ++ G + ++
Sbjct: 65 VLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 122
Query: 183 RGNMKVTE 190
GN + E
Sbjct: 123 NGNEDLAE 130
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V + G T LH AA+ + + +++
Sbjct: 49 TPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEV 98
>pdb|3C5R|A Chain A, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
pdb|3C5R|B Chain B, Crystal Structure Of The Bard1 Ankyrin Repeat Domain And
Its Functional Consequences
Length = 137
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 7/95 (7%)
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELL 227
N +G +L+ A ++G++ E +L + P D G+TPLH AC + H+++VELL
Sbjct: 7 NHRGETLLHIASIKGDIPSVEYLLQNGSD----PNVKDHAGWTPLHEACNHGHLKVVELL 62
Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
++ +K +N + +PL A G ++ L+
Sbjct: 63 LQ-HKALVNTTGYQNDSPLHDAAKNGHVDIVKLLL 96
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 36/139 (25%), Positives = 57/139 (41%), Gaps = 47/139 (33%)
Query: 108 DTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY 167
D PS E LL+NG + N++D+ TP+H+A G ++ LLL H
Sbjct: 22 DIPSVE----------YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQHKA---- 67
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
L N+ G+ +PLH A N H++IV+LL
Sbjct: 68 LVNTTGYQ--------------------------------NDSPLHDAAKNGHVDIVKLL 95
Query: 228 VEKYKVNINALDLKKRTPL 246
+ Y + NA+++ P+
Sbjct: 96 LS-YGASRNAVNIFGLRPV 113
>pdb|2XZT|G Chain G, Caspase-3 In Complex With Darpin-3.4_i78s
pdb|2XZT|H Chain H, Caspase-3 In Complex With Darpin-3.4_i78s
Length = 136
Score = 47.0 bits (110), Expect = 4e-05, Method: Composition-based stats.
Identities = 30/84 (35%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Query: 190 EKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
+++ L N A V D G TPLH+A H+EIVE+L+ K+ ++NA D RTPL
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLL-KHGADVNASDSWGRTPLHL 86
Query: 249 AVGQGQTSVINYLMLRDVALDIQD 272
A G ++ L+ ++ QD
Sbjct: 87 AATVGHLEIVEVLLEYGADVNAQD 110
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/139 (28%), Positives = 57/139 (41%), Gaps = 39/139 (28%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D+ TP+H A +G EI +LL H +VN
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVN----------------- 74
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
S G TPLH+A H+EIVE+L+E Y ++NA D
Sbjct: 75 --------------------ASDSWGRTPLHLAATVGHLEIVEVLLE-YGADVNAQDKFG 113
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 32.0 bits (71), Expect = 1.1, Method: Composition-based stats.
Identities = 18/40 (45%), Positives = 23/40 (57%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH+ A +G +E + +LL GA V D G T LH AA
Sbjct: 49 TPLHLAAKRGHLEIVEVLLKHGADVNASDSWGRTPLHLAA 88
Score = 31.2 bits (69), Expect = 1.8, Method: Composition-based stats.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 14 EELNILLARGACVYYPDDAGDTALHYAA 41
+E+ IL+A GA V DDAG T LH AA
Sbjct: 28 DEVRILMANGADVNAMDDAGVTPLHLAA 55
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 46.6 bits (109), Expect = 4e-05, Method: Composition-based stats.
Identities = 26/66 (39%), Positives = 38/66 (57%), Gaps = 1/66 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
DG TPLH+A H+EIVE+L+ KY ++NA D TPL A +G ++ L+
Sbjct: 46 DGLTPLHLAAQLGHLEIVEVLL-KYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGA 104
Query: 267 ALDIQD 272
++ QD
Sbjct: 105 DVNAQD 110
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 31/105 (29%), Positives = 56/105 (53%), Gaps = 5/105 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D + TP+H A G EI +LL + +VN E++ G L+ A +
Sbjct: 32 ILMANGADVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVN--AEDNFGITPLHLAAI 89
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
RG++++ E +L ++ K G T ++ N + ++ E+L
Sbjct: 90 RGHLEIVEVLLKHGADVNAQDKF--GKTAFDISIDNGNEDLAEIL 132
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+ G +VN +DN TP+H A +G EI +LL H +VN ++ G + ++
Sbjct: 65 VLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 122
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 123 NGNEDLAEILQKLN 136
Score = 30.4 bits (67), Expect = 3.6, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D+ G T LH AA + +++
Sbjct: 49 TPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEV 98
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 46.6 bits (109), Expect = 5e-05, Method: Composition-based stats.
Identities = 39/145 (26%), Positives = 63/145 (43%), Gaps = 3/145 (2%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
+++ ++ D + +A G E L + VN + L++A + V E
Sbjct: 5 ISLGNSEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEY 64
Query: 192 ILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
+L ++ K G PLH AC H E+ ELLV K+ +N DL K TPL A
Sbjct: 65 LLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLHEAAA 121
Query: 252 QGQTSVINYLMLRDVALDIQDIDGN 276
+G+ + L+ ++ DGN
Sbjct: 122 KGKYEICKLLLQHGADPTKKNRDGN 146
Score = 36.2 bits (82), Expect = 0.054, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+L+++G VN+ D + TP+H+A AKG EI LLL H
Sbjct: 97 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 134
Score = 33.1 bits (74), Expect = 0.49, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL- 279
+E V+ L VN ++ ++ TPL A G + SV+ YL+ D+ D GL+
Sbjct: 25 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVP 82
Query: 280 --------HF----LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK 327
H+ L +K K P++E ++ I L++
Sbjct: 83 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE-----AAAKGKYEIC----KLLLQ 133
Query: 328 HGAPLSLENNNRQKPLDLILEDTSLLNEIM 357
HGA + +N + PLDL+ + + + +++
Sbjct: 134 HGADPTKKNRDGNTPLDLVKDGDTDIQDLL 163
>pdb|2KBX|A Chain A, Solution Structure Of Ilk-Pinch Complex
Length = 171
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 41/147 (27%), Positives = 70/147 (47%), Gaps = 18/147 (12%)
Query: 157 LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVAC 216
L L + E +L + GF+ L++A G V E ++ + + + D TPLH+A
Sbjct: 18 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINVMNRGDD--TPLHLAA 75
Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
+ H +IV+ L++ YK +INA++ PL A GQ V +D+ N
Sbjct: 76 SHGHRDIVQKLLQ-YKADINAVNEHGNVPLHYACFWGQDQV------------AEDLVAN 122
Query: 277 GLLHFLFIKKNFYKTPITREKSVPIYE 303
G L + I + + P+ + K+ P+ E
Sbjct: 123 GAL--VSICNKYGEMPVDKAKA-PLRE 146
Score = 37.0 bits (84), Expect = 0.033, Method: Composition-based stats.
Identities = 23/72 (31%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ G +N+ + DTP+H A + G +I Q LL ++N N G L+YA
Sbjct: 52 MLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLLQYKADINAV--NEHGNVPLHYACF 109
Query: 183 RGNMKVTEKILA 194
G +V E ++A
Sbjct: 110 WGQDQVAEDLVA 121
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 46.2 bits (108), Expect = 5e-05, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L++A + V E +L ++ K G PLH AC H E+ ELLV K+ +N
Sbjct: 48 LHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVN 104
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
DL K TPL A +G+ + L+ ++ DGN
Sbjct: 105 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 144
Score = 36.2 bits (82), Expect = 0.055, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+L+++G VN+ D + TP+H+A AKG EI LLL H
Sbjct: 95 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 132
Score = 33.1 bits (74), Expect = 0.50, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL- 279
+E V+ L VN ++ ++ TPL A G + SV+ YL+ D+ D GL+
Sbjct: 23 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVP 80
Query: 280 --------HF----LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK 327
H+ L +K K P++E ++ I L++
Sbjct: 81 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE-----AAAKGKYEIC----KLLLQ 131
Query: 328 HGAPLSLENNNRQKPLDLILEDTSLLNEIM 357
HGA + +N + PLDL+ + + + +++
Sbjct: 132 HGADPTKKNRDGNTPLDLVKDGDTDIQDLL 161
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 46.2 bits (108), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 2/82 (2%)
Query: 210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD 269
+PLH A H++I +LV+ NI+ +RTPLM A + YL+ +D
Sbjct: 13 SPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVKYLIKAGALVD 71
Query: 270 IQDIDGNGLLHFLFIKKNFYKT 291
+D +G+ LH L KK Y+
Sbjct: 72 PKDAEGSTCLH-LAAKKGHYEV 92
Score = 45.4 bits (106), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVT 189
N ++ N+ +P+H A G +I +L+ + ++ E+ + L A +++
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQR--TPLMEAAENNHLEAV 60
Query: 190 EKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
+ ++ PK ++G T LH+A H E+V+ L+ ++++N D TP++ A
Sbjct: 61 KYLI--KAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWA 118
Query: 250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ L+ + ++I+D + N LH+
Sbjct: 119 TEYKHVDLVKLLLSKGSDINIRDNEENICLHW 150
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL G ++NI+DN ++ +H A G +I +LL+ + +L+ N G + L+ A
Sbjct: 129 LLLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLA-AKCDLHAVNIHGDSPLHIAARE 187
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI 221
+L L+R+ K +G TPL A N +
Sbjct: 188 NRYDCV--VLFLSRDSDVTLKNKEGETPLQCASLNSQV 223
Score = 37.0 bits (84), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 63/127 (49%), Gaps = 7/127 (5%)
Query: 125 LLRNG-CNVNIQDNNQDTPMHDAVA-KGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
LL NG +VN QD+ TPM A K + ++LLL ++N+ +N + L++A
Sbjct: 96 LLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIR-DNEENI-CLHWAAF 153
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G + + E +LA +L V D +PLH+A + + V L + + ++ + +
Sbjct: 154 SGCVDIAEILLAAKCDLHAVNIHGD--SPLHIAARENRYDCVVLFLSR-DSDVTLKNKEG 210
Query: 243 RTPLMAA 249
TPL A
Sbjct: 211 ETPLQCA 217
Score = 33.5 bits (75), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAI 49
LH A+ GCV+ ILLA ++ + GD+ LH AA N+ D +
Sbjct: 148 LHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCV 193
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 46.2 bits (108), Expect = 6e-05, Method: Composition-based stats.
Identities = 32/100 (32%), Positives = 47/100 (47%), Gaps = 3/100 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L++A + V E +L ++ K G PLH AC H E+ ELLV K+ +N
Sbjct: 46 LHFAAGYNRVSVVEYLLQHGADVHA--KDKGGLVPLHNACSYGHYEVAELLV-KHGAVVN 102
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
DL K TPL A +G+ + L+ ++ DGN
Sbjct: 103 VADLWKFTPLHEAAAKGKYEICKLLLQHGADPTKKNRDGN 142
Score = 36.2 bits (82), Expect = 0.056, Method: Composition-based stats.
Identities = 18/38 (47%), Positives = 26/38 (68%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+L+++G VN+ D + TP+H+A AKG EI LLL H
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH 130
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 34/150 (22%), Positives = 63/150 (42%), Gaps = 24/150 (16%)
Query: 221 IEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL- 279
+E V+ L VN ++ ++ TPL A G + SV+ YL+ D+ D GL+
Sbjct: 21 VETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GADVHAKDKGGLVP 78
Query: 280 --------HF----LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVK 327
H+ L +K K P++E ++ I L++
Sbjct: 79 LHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHE-----AAAKGKYEIC----KLLLQ 129
Query: 328 HGAPLSLENNNRQKPLDLILEDTSLLNEIM 357
HGA + +N + PLDL+ + + + +++
Sbjct: 130 HGADPTKKNRDGNTPLDLVKDGDTDIQDLL 159
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
P+H A + F ++Q LL S P + L ++ G L+++V ++T +L+ N N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
L P S G+TP H+AC ++E+V+ L ++ K ++N + + T L AVG+ V
Sbjct: 64 LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
+L+ ++ I+D F + P+ R SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150
Score = 38.5 bits (88), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 125 LLRNGCNVNIQDNNQD---TPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYA 180
LL NVN+ D D TP H A + G E+ L P + +L ++G L+ A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFT--PLHVACFNDHIEIVELLVEKYKVNINAL 238
V + +V++ ++ N A+V + D F PLH A ++++ELL K +N
Sbjct: 115 VGKKWFEVSQFLI---ENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 239 DLKKRTPLMAAVGQGQ 254
D + TPL A+ +G
Sbjct: 171 DKQGWTPLFHALAEGH 186
Score = 32.7 bits (73), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI--LNYAVLRGNMKV 188
++N N T +H AV K + E+ L+ E + FN L+ A G++K+
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLI---ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
E + L ++ A + G+TPL A H + LLVEKY + +D K
Sbjct: 156 IELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 44.7 bits (104), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
P+H A + F ++Q LL S P + L ++ G L+++V ++T +L+ N N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
L P S G+TP H+AC ++E+V+ L ++ K ++N + + T L AVG+ V
Sbjct: 64 LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
+L+ ++ I+D F + P+ R SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 125 LLRNGCNVNIQDNNQD---TPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYA 180
LL NVN+ D D TP H A + G E+ L P + +L ++G L+ A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFT--PLHVACFNDHIEIVELLVEKYKVNINAL 238
V + +V++ ++ N A+V + D F PLH A ++++ELL K +N
Sbjct: 115 VGKKWFEVSQFLI---ENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 239 DLKKRTPLMAAVGQGQ 254
D + TPL A+ +G
Sbjct: 171 DKQGWTPLFHALAEGH 186
Score = 32.7 bits (73), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI--LNYAVLRGNMKV 188
++N N T +H AV K + E+ L+ E + FN L+ A G++K+
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLI---ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
E + L ++ A + G+TPL A H + LLVEKY + +D K
Sbjct: 156 IELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/162 (27%), Positives = 79/162 (48%), Gaps = 20/162 (12%)
Query: 142 PMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NRN 198
P+H A + F ++Q LL S P + L ++ G L+++V ++T +L+ N N
Sbjct: 5 PLHQACMENEFFKVQELLHSKPSL-LLQKDQDGRIPLHWSVSFQAHEITSFLLSKMENVN 63
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKRTPLMAAVGQGQTSV 257
L P S G+TP H+AC ++E+V+ L ++ K ++N + + T L AVG+ V
Sbjct: 64 LDDYPDDS-GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEV 122
Query: 258 INYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSV 299
+L+ ++ I+D F + P+ R SV
Sbjct: 123 SQFLIENGASVRIKD--------------KFNQIPLHRAASV 150
Score = 38.5 bits (88), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 10/136 (7%)
Query: 125 LLRNGCNVNIQDNNQD---TPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYA 180
LL NVN+ D D TP H A + G E+ L P + +L ++G L+ A
Sbjct: 55 LLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHLA 114
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFT--PLHVACFNDHIEIVELLVEKYKVNINAL 238
V + +V++ ++ N A+V + D F PLH A ++++ELL K +N
Sbjct: 115 VGKKWFEVSQFLI---ENGASV-RIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 239 DLKKRTPLMAAVGQGQ 254
D + TPL A+ +G
Sbjct: 171 DKQGWTPLFHALAEGH 186
Score = 32.7 bits (73), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI--LNYAVLRGNMKV 188
++N N T +H AV K + E+ L+ E + FN L+ A G++K+
Sbjct: 99 DLNKITNQGVTCLHLAVGKKWFEVSQFLI---ENGASVRIKDKFNQIPLHRAASVGSLKL 155
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
E + L ++ A + G+TPL A H + LLVEKY + +D K
Sbjct: 156 IELLCGLGKS-AVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNK 207
>pdb|3T6P|A Chain A, Iap Antagonist-Induced Conformational Change In Ciap1
Promotes E3 Ligase Activation Via Dimerization
Length = 345
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 5/64 (7%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISR 525
LE ++ ++E TC +CM++ + +F+ CGH C CA +L+ C +CR +I+ + R
Sbjct: 285 LEEQLRRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV---R 341
Query: 526 AFVS 529
F+S
Sbjct: 342 TFLS 345
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 378 ISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCK 437
+S L+L+E+L RR + C VC + V+ V + PC H V C+EC+ ++KC +C+
Sbjct: 280 VSGLSLEEQL--RRLQEERT---CKVCMDKEVSVVFI-PCGHLVVCQECAPSLRKCPICR 333
Query: 438 TFIEMRVTT 446
I+ V T
Sbjct: 334 GIIKGTVRT 342
>pdb|1K1B|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
pdb|1K1A|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Bcl-3: A
Unique Member Of The Ikappab Protein Family
Length = 241
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/157 (27%), Positives = 74/157 (47%), Gaps = 5/157 (3%)
Query: 127 RNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNM 186
+ G ++I +N + TP+H AV + LL++ + L+ G + A +
Sbjct: 34 QGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTAGASPMALDR-HGQTAAHLACEHRSP 92
Query: 187 KVTEKIL--ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-R 243
+L A L + DG T LHVA + E V+LL+E+ +I+A+D+K R
Sbjct: 93 TCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER-GADIDAVDIKSGR 151
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+PL+ AV S++ L+ ++ Q G+ LH
Sbjct: 152 SPLIHAVENNSLSMVQLLLQHGANVNAQMYSGSSALH 188
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK---KRTPLMAAVGQGQTSVINYLM 262
DG TPLH+A ++ V LV ++ LD+ ++TPL AV SV+ L+
Sbjct: 8 DGDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLV 66
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 37/139 (26%), Positives = 57/139 (41%), Gaps = 39/139 (28%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN D +TP+H A EI +LL H +VN +
Sbjct: 32 ILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVNAH--------------- 76
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
+DG TPLH+A H+EIVE+L+ K+ ++NA D
Sbjct: 77 ----------------------DNDGSTPLHLAALFGHLEIVEVLL-KHGADVNAQDKFG 113
Query: 243 RTPLMAAVGQGQTSVINYL 261
+T ++ G + L
Sbjct: 114 KTAFDISIDNGNEDLAEIL 132
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH+A DH+EIVE+L+ K+ ++NA D TPL A G ++ L+
Sbjct: 47 GNTPLHLAADYDHLEIVEVLL-KHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGAD 105
Query: 268 LDIQD 272
++ QD
Sbjct: 106 VNAQD 110
Score = 39.3 bits (90), Expect = 0.007, Method: Composition-based stats.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 3/74 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL++G +VN DN+ TP+H A G EI +LL H +VN ++ G + ++
Sbjct: 65 VLLKHGADVNAHDNDGSTPLHLAALFGHLEIVEVLLKHGADVN--AQDKFGKTAFDISID 122
Query: 183 RGNMKVTEKILALN 196
GN + E + LN
Sbjct: 123 NGNEDLAEILQKLN 136
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 3/129 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL G + N QDN TP+H AVA + +LL + NL G L A
Sbjct: 70 LLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLA 129
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ E ++ + ++ + G T LH A ++ E V +L+ + N +A D K T
Sbjct: 130 IEGMVEDLITADADINAADNS--GKTALHWAAAVNNTEAVNILL-MHHANRDAQDDKDET 186
Query: 245 PLMAAVGQG 253
PL A +G
Sbjct: 187 PLFLAAREG 195
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 34/74 (45%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G TPLH A D + + ++L+ N+NA TPL+ A ++ L+ D
Sbjct: 84 GRTPLHAAVAADAMGVFQILLRNRATNLNARMHDGTTPLILAARLAIEGMVEDLITADAD 143
Query: 268 LDIQDIDGNGLLHF 281
++ D G LH+
Sbjct: 144 INAADNSGKTALHW 157
Score = 33.1 bits (74), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 27/45 (60%), Gaps = 3/45 (6%)
Query: 7 LAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
LA +G VE+L + A + D++G TALH+AA N +A+ I
Sbjct: 128 LAIEGMVEDL---ITADADINAADNSGKTALHWAAAVNNTEAVNI 169
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 43.9 bits (102), Expect = 3e-04, Method: Composition-based stats.
Identities = 44/160 (27%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
I Q+ LRN +D+ TP+ A G E L+ + + L ++ +G L
Sbjct: 20 INQNLDFLRN-----YRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKDIEGSTALI 73
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
+AV + + EK+L+ N+ T K G TPL + + E+ L+E + N+N
Sbjct: 74 WAVKNNRLGIAEKLLSKGSNVNT--KDFSGKTPLMWSIIFGYSEMSYFLLE-HGANVNDR 130
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL 278
+L+ TPL+ A G++ ++ L+ ++ DI D GL
Sbjct: 131 NLEGETPLIVASKYGRSEIVKKLL--ELGADISARDLTGL 168
Score = 35.8 bits (81), Expect = 0.068, Method: Composition-based stats.
Identities = 29/105 (27%), Positives = 49/105 (46%), Gaps = 3/105 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL G NVN +D + TP+ ++ G+ E+ LL H N+ N +G L A G
Sbjct: 87 LLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEH-GANVNDRNLEGETPLIVASKYG 145
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
++ +K+L L +++ T G T A E++++ E
Sbjct: 146 RSEIVKKLLELGADISARDLT--GLTAEASARIFGRQEVIKIFTE 188
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 6/96 (6%)
Query: 185 NMKVTEKIL---ALNRNLATVPKTSDGF--TPLHVACFNDHIEIVELLVEKYKVNINALD 239
N ++ EKI ++N+NL + D + TPL VAC ++ LVE + + D
Sbjct: 7 NGEIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFD-KLEDKD 65
Query: 240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
++ T L+ AV + + L+ + ++ +D G
Sbjct: 66 IEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSG 101
Score = 29.6 bits (65), Expect = 5.3, Method: Composition-based stats.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 32/175 (18%)
Query: 222 EIVELLVEKYKVNINA------LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
EIVE + ++ +N N D RTPLM A G + I+ L+ L+ +DI+G
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEG 68
Query: 276 NGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHG------ILLAVFL------ 323
+ L ++ KN + I E+ LS G N ++ ++
Sbjct: 69 STAL--IWAVKN---------NRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMS 117
Query: 324 -FLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTA 377
FL++HGA ++ N + P LI+ +EI++ E D++ + +TA
Sbjct: 118 YFLLEHGANVNDRNLEGETP--LIVASKYGRSEIVKKLLELGADISARDLTGLTA 170
>pdb|2L6B|A Chain A, Nrc Consensus Ankyrin Repeat Protein Solution Structure
Length = 115
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 33/99 (33%), Positives = 54/99 (54%), Gaps = 6/99 (6%)
Query: 140 DTPMHDAVAKGF-EEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN 198
+TP+H+A G EE++ LL +VN + G L+ A G+ ++ + +LA +
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAKGAD 67
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
+ ++ DG TP H+A N H EIV+LL K ++NA
Sbjct: 68 VNA--RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNA 103
Score = 43.5 bits (101), Expect = 4e-04, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR 264
+ DG TPLH A N H E V+ L+ K ++NA TPL A G ++ L+ +
Sbjct: 6 SKDGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK 64
Query: 265 DVALDIQDIDGNGLLHFLFIKKN 287
++ + DGN H KKN
Sbjct: 65 GADVNARSKDGNTPEH--LAKKN 85
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 27/85 (31%), Positives = 44/85 (51%), Gaps = 3/85 (3%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L+ A G+ + +K+L+ ++ ++ DG TPLH+A N H EIV+LL+ K ++N
Sbjct: 13 LHNAAKNGHAEEVKKLLSKGADVNA--RSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVN 69
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYL 261
A TP A G ++ L
Sbjct: 70 ARSKDGNTPEHLAKKNGHHEIVKLL 94
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH A G EE+ LL++GA V G+T LH AA + +++
Sbjct: 11 TPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 43.5 bits (101), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 72/150 (48%), Gaps = 4/150 (2%)
Query: 141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
TP+H A +G + + L+ + + L + +G + ++ A G+ + ++A +++
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYG-ADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVD 136
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKRTPLMAAVGQGQTSVIN 259
+ + +G TPL A + H L+ + V++N D K T L AV G T+VI+
Sbjct: 137 MMDQ--NGMTPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS 194
Query: 260 YLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
L+ +D Q+I G L +KN +
Sbjct: 195 LLLEAGANVDAQNIKGESALDLAKQRKNVW 224
>pdb|3EB5|A Chain A, Structure Of The Ciap2 Ring Domain
pdb|3EB6|A Chain A, Structure Of The Ciap2 Ring Domain Bound To Ubch5b
Length = 74
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 21/64 (32%), Positives = 38/64 (59%), Gaps = 5/64 (7%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISR 525
+E ++ ++E TC +CM++ + +F+ CGH C CA +L+ C +CR I+ + R
Sbjct: 14 VEEQLRRLQEERTCKVCMDKEVSIVFIPCGHLVVCKDCAPSLRKCPICRSTIKGTV---R 70
Query: 526 AFVS 529
F+S
Sbjct: 71 TFLS 74
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 23/69 (33%), Positives = 40/69 (57%), Gaps = 6/69 (8%)
Query: 378 ISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCK 437
+S L ++E+L RR + C VC + V+ V + PC H V C++C+ ++KC +C+
Sbjct: 9 VSDLPVEEQL--RRLQEERT---CKVCMDKEVSIVFI-PCGHLVVCKDCAPSLRKCPICR 62
Query: 438 TFIEMRVTT 446
+ I+ V T
Sbjct: 63 STIKGTVRT 71
>pdb|1BD8|A Chain A, Structure Of Cdk Inhibitor P19ink4d
Length = 156
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL+ G + N+QD + +P+HDA GF + +L+ H +VN + + G ++ AV
Sbjct: 54 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQE 111
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G+ V LA +L + + G TPL +A ++V++L
Sbjct: 112 GHTAVVS-FLAAESDLHR--RDARGLTPLELALQRGAQDLVDIL 152
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VL+ +G +VN+ D P+H AV +G + L + E +L+ +++G L A+ R
Sbjct: 86 VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQR 143
Query: 184 G 184
G
Sbjct: 144 G 144
>pdb|1BI8|B Chain B, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
pdb|1BI8|D Chain D, Mechanism Of G1 Cyclin Dependent Kinase Inhibition From
The Structures Cdk6-P19ink4d Inhibitor Complex
Length = 166
Score = 40.8 bits (94), Expect = 0.002, Method: Composition-based stats.
Identities = 31/104 (29%), Positives = 54/104 (51%), Gaps = 6/104 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL+ G + N+QD + +P+HDA GF + +L+ H +VN + + G ++ AV
Sbjct: 60 LLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVN--VPDGTGALPIHLAVQE 117
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G+ V LA +L + + G TPL +A ++V++L
Sbjct: 118 GHTAVVS-FLAAESDLHR--RDARGLTPLELALQRGAQDLVDIL 158
Score = 34.3 bits (77), Expect = 0.21, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VL+ +G +VN+ D P+H AV +G + L + E +L+ +++G L A+ R
Sbjct: 92 VLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRDARGLTPLELALQR 149
Query: 184 G 184
G
Sbjct: 150 G 150
>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell
Growth Regulator With Ring Finger Domain 1 Protein
Length = 68
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRVTTDG 448
+C VC G N +L PC H C+ C ++C MC+ F++ G
Sbjct: 17 DCVVCQN-GTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALSG 64
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
Query: 476 EEMNTCTICMERCRNTIFL-CGHGT-CDVCAKTLKFCHMCRKLIEQRINIS 524
E C +C N + L C H CD C K + C MCR+ +++ +S
Sbjct: 13 ENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFALS 63
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 70/145 (48%), Gaps = 7/145 (4%)
Query: 125 LLRNG-CNVNIQDNNQDTP-MHDAVA--KGFEEIQLLLLSHPEVNLYLENSK-GFNILNY 179
LL +G C V+ Q+ +P M A+A K ++I+ +L N+ + S+ G L
Sbjct: 130 LLDSGVCKVDKQNRAGYSPIMLTALATLKTQDDIETVLQLFRLGNINAKASQAGQTALML 189
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
AV G + V + +LA ++ + DG T L AC + H EI LL+ +I+ D
Sbjct: 190 AVSHGRVDVVKALLACEADVNV--QDDDGSTALMCACEHGHKEIAGLLLAVPSCDISLTD 247
Query: 240 LKKRTPLMAAVGQGQTSVINYLMLR 264
T LM A+ GQ+ + + L R
Sbjct: 248 RDGSTALMVALDAGQSEIASMLYSR 272
Score = 38.5 bits (88), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 32/118 (27%), Positives = 56/118 (47%), Gaps = 9/118 (7%)
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS-DGFTPLHVACF-----NDHI 221
+ +S G L+Y+V N V +++L + + V K + G++P+ + D I
Sbjct: 106 IADSNGNTALHYSVSHANFPVVQQLL--DSGVCKVDKQNRAGYSPIMLTALATLKTQDDI 163
Query: 222 EIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
E V L +N A +T LM AV G+ V+ L+ + +++QD DG+ L
Sbjct: 164 ETVLQLFRLGNINAKA-SQAGQTALMLAVSHGRVDVVKALLACEADVNVQDDDGSTAL 220
>pdb|3ZKJ|A Chain A, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
pdb|3ZKJ|D Chain D, Crystal Structure Of Ankyrin Repeat And Socs
Box-containing Protein 9 (asb9) In Complex With Elonginb
And Elonginc
Length = 261
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
T+D +PLH AC H+ V++L+ K+ +N + TPL A G +N L+
Sbjct: 33 TADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 89
Score = 38.1 bits (87), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 18/159 (11%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-----PEVNLYLENSKGFNILN 178
+LL++G VN + TP+ +A G + LLL H PE +L + ++
Sbjct: 54 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-------SPIH 106
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
A RG+++ ++A N+ K S TPL++AC N V+ L+E ++N
Sbjct: 107 EAARRGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ- 162
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
+ +PL A + LM D D Q + G
Sbjct: 163 GKGQDSPLHAVARTASEELACLLM--DFGADTQAKNAEG 199
Score = 36.2 bits (82), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L+ G VNI + +P+H+A G +LL H +VN + L A +
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV--TADWHTPLFNACVS 79
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G+ +L ++ A+V SD +P+H A H+E V L+ Y NI+
Sbjct: 80 GSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLG 135
Query: 244 TPLMAAVGQGQTSVINYLM 262
TPL A Q + + L+
Sbjct: 136 TPLYLACENQQRACVKKLL 154
>pdb|3EHQ|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHQ|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|A Chain A, Crystal Structure Of Human Osteoclast Stimulating Factor
pdb|3EHR|B Chain B, Crystal Structure Of Human Osteoclast Stimulating Factor
Length = 222
Score = 40.0 bits (92), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 47/100 (47%), Gaps = 2/100 (2%)
Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
N L+ A RGN+ + L + + K G T L+ AC H +IVE L + +
Sbjct: 75 NPLHEAAKRGNLSWLRECLDNRVGVNGLDKA--GSTALYWACHGGHKDIVEXLFTQPNIE 132
Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
+N + T L AA +G ++ L+ + D+++I+
Sbjct: 133 LNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDLRNIE 172
>pdb|4G8K|A Chain A, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8K|B Chain B, Intact Sensor Domain Of Human Rnase L In The Inactive
Signaling State
pdb|4G8L|A Chain A, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|B Chain B, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|C Chain C, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
pdb|4G8L|D Chain D, Active State Of Intact Sensor Domain Of Human Rnase L With
2-5a Bound
Length = 337
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 125 LLRNGCNVNIQDNNQD-TPMHDAVAKGFEEIQLLLLSHPE-------------------- 163
LL G NVN Q+ TP+H+AV E+I LLL H
Sbjct: 44 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFILAAIAG 103
Query: 164 ----VNLYLENSK--------GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD---- 207
+ L+L GF A + G +K + + N+ KT +
Sbjct: 104 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 163
Query: 208 ----GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS---VINY 260
G T L A H+E++++L+++ ++NA D R L+ A+ S I +
Sbjct: 164 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 223
Query: 261 LML 263
L+L
Sbjct: 224 LLL 226
>pdb|3D9H|A Chain A, Crystal Structure Of The Splice Variant Of Human Asb9
(Hasb9-2), An Ankyrin Repeat Protein
Length = 285
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
T+D +PLH AC H+ V++L+ K+ +N + TPL A G +N L+
Sbjct: 89 TADHVSPLHEACLGGHLSCVKILL-KHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL 145
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-----PEVNLYLENSKGFNILN 178
+LL++G VN + TP+ +A G + LLL H PE +L + ++
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQPESDLA-------SPIH 162
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
A RG+++ ++A N+ K S TPL++AC N V+ L+E ++N
Sbjct: 163 EAARRGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ- 218
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
+ +PL A V + LM D D Q + G
Sbjct: 219 GKGQDSPLHAVVRTASEELACLLM--DFGADTQAKNAEG 255
Score = 34.7 bits (78), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 60/139 (43%), Gaps = 7/139 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L+ G VNI + +P+H+A G +LL H +VN + L A +
Sbjct: 78 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNGV--TADWHTPLFNACVS 135
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G+ +L ++ A+V SD +P+H A H+E V L+ Y NI+
Sbjct: 136 GSWDCVNLLL---QHGASVQPESDLASPIHEAARRGHVECVNSLI-AYGGNIDHKISHLG 191
Query: 244 TPLMAAVGQGQTSVINYLM 262
TPL A Q + + L+
Sbjct: 192 TPLYLACENQQRACVKKLL 210
>pdb|2XEN|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 91
Score = 39.7 bits (91), Expect = 0.006, Method: Composition-based stats.
Identities = 21/58 (36%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
K DG+TPLH+A H+EIVE+L+ K ++NA D +T ++ G + L
Sbjct: 31 KDKDGYTPLHLAAREGHLEIVEVLL-KAGADVNAQDKFGKTAFDISIDNGNEDLAEIL 87
Score = 33.9 bits (76), Expect = 0.31, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 3/68 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A +G EI ++LL + +VN ++ G + ++
Sbjct: 20 ILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVN--AQDKFGKTAFDISID 77
Query: 183 RGNMKVTE 190
GN + E
Sbjct: 78 NGNEDLAE 85
>pdb|1WDY|A Chain A, Crystal Structure Of Ribonuclease
Length = 285
Score = 39.3 bits (90), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 71/183 (38%), Gaps = 44/183 (24%)
Query: 125 LLRNGCNVNIQDNNQD-TPMHDAVAKGFEEIQLLLLSHPE-------------------- 163
LL G NVN Q+ TP+H+AV E+I LLL H
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAG 83
Query: 164 ----VNLYLENSK--------GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSD---- 207
+ L+L GF A + G +K + + N+ KT +
Sbjct: 84 SVKLLKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQER 143
Query: 208 ----GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTS---VINY 260
G T L A H+E++++L+++ ++NA D R L+ A+ S I +
Sbjct: 144 LRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDSDVEAITH 203
Query: 261 LML 263
L+L
Sbjct: 204 LLL 206
>pdb|3AAA|C Chain C, Crystal Structure Of Actin Capping Protein In Complex With
V-1
Length = 123
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G PLH A +EI+E L+ K +INA D TPL++AV +G S + L+ +
Sbjct: 40 GRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 98
Query: 268 LDIQDIDG 275
++ DG
Sbjct: 99 KTVKGPDG 106
>pdb|1MX6|A Chain A, Structure Of P18ink4c (F92n)
pdb|1MX6|B Chain B, Structure Of P18ink4c (F92n)
Length = 168
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 34/70 (48%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL N +VNI+DN + P+H A +G + L+ H N+ N KG + A L G
Sbjct: 89 LLENQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 185 NMKVTEKILA 194
+V + A
Sbjct: 149 RNEVVSLMQA 158
Score = 36.2 bits (82), Expect = 0.053, Method: Composition-based stats.
Identities = 31/122 (25%), Positives = 57/122 (46%), Gaps = 13/122 (10%)
Query: 150 GFEEIQLLLLSHPEV---------NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
G +Q++ L +PE+ N L++ GF +++ A G + + +L N A
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL---ENQA 94
Query: 201 TVP-KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVIN 259
V + ++G PLH+A H+ +VE LV+ N+ + K T A G+ V++
Sbjct: 95 DVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVS 154
Query: 260 YL 261
+
Sbjct: 155 LM 156
>pdb|1MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, 44 Structures
pdb|2MYO|A Chain A, Solution Structure Of Myotrophin, Nmr, Minimized Average
Structure
pdb|2KXP|C Chain C, Solution Nmr Structure Of V-1 Bound To Capping Protein
(Cp)
Length = 118
Score = 38.9 bits (89), Expect = 0.009, Method: Composition-based stats.
Identities = 24/68 (35%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G PLH A +EI+E L+ K +INA D TPL++AV +G S + L+ +
Sbjct: 35 GRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGHVSCVKLLLSKGAD 93
Query: 268 LDIQDIDG 275
++ DG
Sbjct: 94 KTVKGPDG 101
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 38.5 bits (88), Expect = 0.013, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 150 GFEEIQLLLLSHPEV---------NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
G +Q++ L +PE+ N L++ GF +++ A G + + +L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLLEFQADVN 97
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
+ ++G PLH+A H+ +VE LV+ N+ + K T A G+ V++
Sbjct: 98 I--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 261 L 261
+
Sbjct: 156 M 156
Score = 35.4 bits (80), Expect = 0.098, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL +VNI+DN + P+H A +G + L+ H N+ N KG + A L G
Sbjct: 89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 185 NMKVTEKILA 194
+V + A
Sbjct: 149 RNEVVSLMQA 158
>pdb|1AP7|A Chain A, P19-Ink4d From Mouse, Nmr, 20 Structures
Length = 168
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL+ G + N+QD + +P+HDA GF + +L+ H +VN +S G ++ A+
Sbjct: 62 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL--DSTGSLPIHLAIRE 119
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVA 215
G+ V LA +L + + G TPL +A
Sbjct: 120 GHSSVVS-FLAPESDLHH--RDASGLTPLELA 148
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
+ + G +P+H A ++ +++LVE + ++NALD P+ A+ +G +SV+++L
Sbjct: 72 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 130
Query: 264 RDVALDIQDIDGNGL 278
D+ D +GL
Sbjct: 131 ES---DLHHRDASGL 142
Score = 32.7 bits (73), Expect = 0.57, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VL+ +G +VN D+ P+H A+ +G + L PE +L+ ++ G L A R
Sbjct: 94 VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA--PESDLHHRDASGLTPLELARQR 151
Query: 184 G 184
G
Sbjct: 152 G 152
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
G + L+ A G+ TE + L ++ +T TPLH+A H IVE+L+ K+
Sbjct: 34 GTSPLHLAAQYGHFSTTE--VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-KHG 90
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLM 262
++NA D+ K T L A V+ L+
Sbjct: 91 ADVNAKDMLKMTALHWATEHNHQEVVELLI 120
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 3/81 (3%)
Query: 203 PKTSD--GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
P T+D G +PLH+A H E+L+ + V+ +A RTPL A +G +++
Sbjct: 27 PFTTDWLGTSPLHLAAQYGHFSTTEVLL-RAGVSRDARTKVDRTPLHMAASEGHANIVEV 85
Query: 261 LMLRDVALDIQDIDGNGLLHF 281
L+ ++ +D+ LH+
Sbjct: 86 LLKHGADVNAKDMLKMTALHW 106
Score = 30.0 bits (66), Expect = 4.0, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A +G + +LL GA V D TALH+A N + +++
Sbjct: 68 RTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVEL 118
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 38.1 bits (87), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLS----HPEVNLYLENSKGFNILN 178
LL GC+ ++D +TP+H A +G + +L S H L N G L+
Sbjct: 60 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 119
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
A + G + + E +++L ++ + +G T LH+A + ++V LL+ K ++N +
Sbjct: 120 LASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRV 177
Query: 239 DLKKRTPLMAAVGQGQTSV 257
+ +P G+ T +
Sbjct: 178 TYQGYSPYQLTWGRPSTRI 196
Score = 33.9 bits (76), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLS---HPEVNLYLENSKGFNILNYAVLRGNMKV 188
+N Q+N Q TP+H AV EI LL PE L + +G L+ A +G +
Sbjct: 35 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----LRDFRGNTPLHLACEQGCLAS 90
Query: 189 TEKILA--LNRNLATVPKTS--DGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKR 243
+ +L ++ K + +G T LH+A + ++ IVELLV ++NA + R
Sbjct: 91 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV-SLGADVNAQEPCNGR 149
Query: 244 TPLMAAVGQGQTSVINYLM 262
T L AV +++ L+
Sbjct: 150 TALHLAVDLQNPDLVSLLL 168
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 65/139 (46%), Gaps = 7/139 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLS----HPEVNLYLENSKGFNILN 178
LL GC+ ++D +TP+H A +G + +L S H L N G L+
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
A + G + + E +++L ++ + +G T LH+A + ++V LL+ K ++N +
Sbjct: 123 LASIHGYLGIVELLVSLGADV-NAQEPCNGRTALHLAVDLQNPDLVSLLL-KCGADVNRV 180
Query: 239 DLKKRTPLMAAVGQGQTSV 257
+ +P G+ T +
Sbjct: 181 TYQGYSPYQLTWGRPSTRI 199
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 66/139 (47%), Gaps = 13/139 (9%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLS---HPEVNLYLENSKGFNILNYAVLRGNMKV 188
+N Q+N Q TP+H AV EI LL PE L + +G L+ A +G +
Sbjct: 38 LNFQNNLQQTPLHLAVITNQPEIAEALLGAGCDPE----LRDFRGNTPLHLACEQGCLAS 93
Query: 189 TEKILA--LNRNLATVPKTS--DGFTPLHVACFNDHIEIVELLVEKYKVNINALD-LKKR 243
+ +L ++ K + +G T LH+A + ++ IVELLV ++NA + R
Sbjct: 94 VGVLTQSCTTPHLHSILKATNYNGHTCLHLASIHGYLGIVELLV-SLGADVNAQEPCNGR 152
Query: 244 TPLMAAVGQGQTSVINYLM 262
T L AV +++ L+
Sbjct: 153 TALHLAVDLQNPDLVSLLL 171
Score = 28.9 bits (63), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 3/80 (3%)
Query: 205 TSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK---KRTPLMAAVGQGQTSVINYL 261
T DG + LH+A ++ + ++ + K ++ L+ + ++TPL AV Q + L
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEAL 64
Query: 262 MLRDVALDIQDIDGNGLLHF 281
+ +++D GN LH
Sbjct: 65 LGAGCDPELRDFRGNTPLHL 84
>pdb|1BLX|B Chain B, P19ink4dCDK6 COMPLEX
Length = 166
Score = 38.1 bits (87), Expect = 0.015, Method: Composition-based stats.
Identities = 29/92 (31%), Positives = 48/92 (52%), Gaps = 6/92 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL+ G + N+QD + +P+HDA GF + +L+ H +VN +S G ++ A+
Sbjct: 60 LLKQGASPNVQDASGTSPVHDAARTGFLDTLKVLVEHGADVNAL--DSTGSLPIHLAIRE 117
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVA 215
G+ V LA +L + + G TPL +A
Sbjct: 118 GHSSVVS-FLAPESDLHH--RDASGLTPLELA 146
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 21/75 (28%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
+ + G +P+H A ++ +++LVE + ++NALD P+ A+ +G +SV+++L
Sbjct: 70 QDASGTSPVHDAARTGFLDTLKVLVE-HGADVNALDSTGSLPIHLAIREGHSSVVSFLAP 128
Query: 264 RDVALDIQDIDGNGL 278
D+ D +GL
Sbjct: 129 ES---DLHHRDASGL 140
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VL+ +G +VN D+ P+H A+ +G + L PE +L+ ++ G L A R
Sbjct: 92 VLVEHGADVNALDSTGSLPIHLAIREGHSSVVSFLA--PESDLHHRDASGLTPLELARQR 149
Query: 184 G 184
G
Sbjct: 150 G 150
>pdb|3HRA|A Chain A, Crystal Structure Of Ef0377 An Ankyrin Repeat Protein
Length = 201
Score = 38.1 bits (87), Expect = 0.017, Method: Composition-based stats.
Identities = 24/77 (31%), Positives = 44/77 (57%), Gaps = 5/77 (6%)
Query: 206 SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRD 265
++G TPL++A N+ IEI + L+++ +IN + +P + A QG+T ++ Y ML+
Sbjct: 37 TEGNTPLNIAVHNNDIEIAKALIDR-GADINLQNSISDSPYLYAGAQGRTEILAY-MLKH 94
Query: 266 VALDIQDID---GNGLL 279
D+ + GN L+
Sbjct: 95 ATPDLNKHNRYGGNALI 111
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 37/73 (50%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L+ G ++N+Q++ D+P A A+G EI +L H +L N G N L A +G
Sbjct: 58 LIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKG 117
Query: 185 NMKVTEKILALNR 197
++ + +L R
Sbjct: 118 HIDNVKLLLEDGR 130
Score = 30.0 bits (66), Expect = 4.2, Method: Composition-based stats.
Identities = 17/43 (39%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 121 QDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
QD V L+ NG + +I+DN+ T M A KG+ EI +L +
Sbjct: 158 QDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 37.7 bits (86), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G T LH A H EIV+ LV+ + VN+NA D TPL A V +L+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 267 AL 268
A+
Sbjct: 128 AV 129
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
L N +G L+ AV G+ ++ + ++ N+ SDG+TPLH A +++++ + L
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFL 122
Query: 228 VE 229
VE
Sbjct: 123 VE 124
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 37.7 bits (86), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G T LH A H EIV+ LV+ + VN+NA D TPL A V +L+
Sbjct: 69 EGITALHNAVCAGHTEIVKFLVQ-FGVNVNAADSDGWTPLHCAASCNNVQVCKFLVESGA 127
Query: 267 AL 268
A+
Sbjct: 128 AV 129
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 35/62 (56%), Gaps = 2/62 (3%)
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
L N +G L+ AV G+ ++ + ++ N+ SDG+TPLH A +++++ + L
Sbjct: 65 LPNDEGITALHNAVCAGHTEIVKFLVQFGVNVNAA--DSDGWTPLHCAASCNNVQVCKFL 122
Query: 228 VE 229
VE
Sbjct: 123 VE 124
>pdb|1IHB|A Chain A, Crystal Structure Of P18-Ink4c(Ink6)
pdb|1IHB|B Chain B, Crystal Structure Of P18-Ink4c(Ink6)
Length = 162
Score = 37.4 bits (85), Expect = 0.026, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 150 GFEEIQLLLLSHPEV---------NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
G +Q++ L +PE+ N L++ GF +++ A G + + +L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
+ ++G PLH+A H+ +VE LV+ N+ + K T A G+ V++
Sbjct: 98 I--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 261 L 261
+
Sbjct: 156 M 156
Score = 35.4 bits (80), Expect = 0.089, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL +VNI+DN + P+H A +G + L+ H N+ N KG + A L G
Sbjct: 89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 185 NMKVTEKILA 194
+V + A
Sbjct: 149 RNEVVSLMQA 158
>pdb|1BU9|A Chain A, Solution Structure Of P18-Ink4c, 21 Structures
pdb|1G3N|B Chain B, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
pdb|1G3N|F Chain F, Structure Of A P18(Ink4c)-Cdk6-K-Cyclin Ternary Complex
Length = 168
Score = 37.4 bits (85), Expect = 0.027, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 56/121 (46%), Gaps = 11/121 (9%)
Query: 150 GFEEIQLLLLSHPEV---------NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
G +Q++ L +PE+ N L++ GF +++ A G + + +L ++
Sbjct: 38 GRTALQVMKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVN 97
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
+ ++G PLH+A H+ +VE LV+ N+ + K T A G+ V++
Sbjct: 98 I--EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
Query: 261 L 261
+
Sbjct: 156 M 156
Score = 35.4 bits (80), Expect = 0.091, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL +VNI+DN + P+H A +G + L+ H N+ N KG + A L G
Sbjct: 89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 185 NMKVTEKILA 194
+V + A
Sbjct: 149 RNEVVSLMQA 158
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 37.0 bits (84), Expect = 0.030, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
K +G TPLH+A N H+E+V+LL+E ++NA D +T ++ G + L
Sbjct: 35 KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVNAQDKFGKTAFDISIDNGNEDLAEIL 91
Score = 34.3 bits (77), Expect = 0.23, Method: Composition-based stats.
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+ NG +V +D N TP+H A G E ++LLL + +VN ++ G + ++
Sbjct: 24 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEAGADVN--AQDKFGKTAFDISID 81
Query: 183 RGNMKVTE 190
GN + E
Sbjct: 82 NGNEDLAE 89
>pdb|3V2O|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 183
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+GFTPL A + I +VE L++ + L + + L A +G T ++ ML D
Sbjct: 51 EGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVK--MLLDC 107
Query: 267 ALDIQDIDGNGLLHFLF 283
+D+ + D NG L+
Sbjct: 108 GVDVNEYDWNGGTPLLY 124
>pdb|3V2X|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
pdb|3V31|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Ankra2
Length = 167
Score = 37.0 bits (84), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+GFTPL A + I +VE L++ + L + + L A +G T ++ ML D
Sbjct: 35 EGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVK--MLLDC 91
Query: 267 ALDIQDIDGNGLLHFLF 283
+D+ + D NG L+
Sbjct: 92 GVDVNEYDWNGGTPLLY 108
>pdb|3SO8|A Chain A, Crystal Structure Of Ankra
Length = 162
Score = 37.0 bits (84), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+GFTPL A + I +VE L++ + L + + L A +G T ++ ML D
Sbjct: 33 EGFTPLMWAAAHGQIAVVEFLLQN-GADPQLLGKGRESALSLACSKGYTDIVK--MLLDC 89
Query: 267 ALDIQDIDGNGLLHFLF 283
+D+ + D NG L+
Sbjct: 90 GVDVNEYDWNGGTPLLY 106
>pdb|4IC2|A Chain A, Crystal Structure Of The Xiap Ring Domain
pdb|4IC2|B Chain B, Crystal Structure Of The Xiap Ring Domain
Length = 74
Score = 36.2 bits (82), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMR 443
C +C + +A V + PC H V C++C+ + KC MC T I +
Sbjct: 27 CKICMDRNIAIVFV-PCGHLVTCKQCAEAVDKCPMCYTVITFK 68
Score = 33.9 bits (76), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLI--EQRINIS 524
E ++ ++E C ICM+R +F+ CGH TC CA+ + C MC +I +Q+I +S
Sbjct: 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 74
>pdb|4IC3|A Chain A, Crystal Structure Of The F495l Mutant Xiap Ring Domain
pdb|4IC3|B Chain B, Crystal Structure Of The F495l Mutant Xiap Ring Domain
Length = 74
Score = 36.2 bits (82), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMR 443
C +C + +A V + PC H V C++C+ + KC MC T I +
Sbjct: 27 CKICMDRNIAIVFV-PCGHLVTCKQCAEAVDKCPMCYTVITFK 68
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLI--EQRINIS 524
E ++ ++E C ICM+R +F+ CGH TC CA+ + C MC +I +Q+I +S
Sbjct: 15 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKILMS 74
>pdb|2ECG|A Chain A, Solution Structure Of The Ring Domain Of The Baculoviral
Iap Repeat-Containing Protein 4 From Homo Sapiens
Length = 75
Score = 35.8 bits (81), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMR 443
C +C + +A V + PC H V C++C+ + KC MC T I +
Sbjct: 28 CKICMDRNIAIVFV-PCGHLVTCKQCAEAVDKCPMCYTVITFK 69
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLI--EQRINIS 524
E ++ ++E C ICM+R +F+ CGH TC CA+ + C MC +I +Q+I +S
Sbjct: 16 EEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQKIFMS 75
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 35.4 bits (80), Expect = 0.10, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 33/70 (47%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL +VNI+DN + P+H A +G + L+ H N+ N KG + A L G
Sbjct: 89 LLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYG 148
Query: 185 NMKVTEKILA 194
+V + A
Sbjct: 149 RNEVVSLMQA 158
Score = 34.3 bits (77), Expect = 0.22, Method: Composition-based stats.
Identities = 31/138 (22%), Positives = 53/138 (38%), Gaps = 38/138 (27%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGF-EEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL G N +++D + +HDA GF + +Q LL +VN+
Sbjct: 56 LLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLLEFQADVNI----------------- 98
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ ++G PLH+A H+ +VE LV+ N+ + K
Sbjct: 99 --------------------EDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGD 138
Query: 244 TPLMAAVGQGQTSVINYL 261
T A G+ V++ +
Sbjct: 139 TACDLARLYGRNEVVSLM 156
>pdb|2ZGD|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 110
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 19/58 (32%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
K +G TPLH+A N H+E+V+LL+E ++ A D +T ++ G + L
Sbjct: 53 KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGKTAFDISIDNGNEDLAEIL 109
Score = 32.3 bits (72), Expect = 0.77, Method: Composition-based stats.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
+L+ NG +V +D N TP+H A G E+ LLL
Sbjct: 42 ILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLL 77
>pdb|2YHN|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHN|B Chain B, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|A Chain A, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|C Chain C, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|E Chain E, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
pdb|2YHO|G Chain G, The Idol-Ube2d Complex Mediates Sterol-Dependent
Degradation Of The Ldl Receptor
Length = 79
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIE 441
C VC E + N PC H V CE C+++++ C +C++ +E
Sbjct: 21 CMVCCEEEI-NSTFCPCGHTVCCESCAAQLQSCPVCRSRVE 60
Score = 33.5 bits (75), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 463 ERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTC-DVCAKTLKFCHMCRKLIE 518
++ L+ K+ +++E C +C E N+ F CGH C + CA L+ C +CR +E
Sbjct: 3 QQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVE 60
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 34.3 bits (77), Expect = 0.20, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 141 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 177
>pdb|2FO1|E Chain E, Crystal Structure Of The Csl-Notch-Mastermind Ternary
Complex Bound To Dna
Length = 373
Score = 34.3 bits (77), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 33/65 (50%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
G T LH A + IV+ LV + N + D +TP+ A +G+ V+ YL+ + +
Sbjct: 279 GRTALHYAAQVSNXPIVKYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLIQQGAS 338
Query: 268 LDIQD 272
++ D
Sbjct: 339 VEAVD 343
Score = 30.0 bits (66), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 22/91 (24%), Positives = 39/91 (42%), Gaps = 2/91 (2%)
Query: 169 ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
E KG L+YA N + K L + + DG TP+ +A IE+V L+
Sbjct: 275 EKYKGRTALHYAAQVSNXPIV-KYLVGEKGSNKDKQDEDGKTPIXLAAQEGRIEVVXYLI 333
Query: 229 EKYKVNINALDLKKRTPLMAAVGQGQTSVIN 259
++ ++ A+D T A ++++
Sbjct: 334 QQ-GASVEAVDATDHTARQLAQANNHHNIVD 363
>pdb|1YMP|A Chain A, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
pdb|1YMP|B Chain B, The Crystal Structure Of A Partial Mouse Notch-1 Ankyrin
Domain: Repeats 4 Through 7 Preserve An Ankyrin Fold
Length = 135
Score = 33.9 bits (76), Expect = 0.27, Method: Composition-based stats.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 67 LLKNGANKDMQNNKEETPLFLAAREGSYETAKVLLDH 103
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 32.7 bits (73), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 29.6 bits (65), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL + NIQDN TP+H AV+ + + +L+ + +L G L +L
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAA 132
Query: 185 NMKVTEKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ V + L + A V D G + LH A ++++ +L+ K N + + ++
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREE 191
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQD 272
TPL A +G L+ DI D
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK------RTPLMAAVGQGQTSVINY 260
DG TPLHVA + E+V LL + DL K RTPL AV SV+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 261 LM 262
L+
Sbjct: 211 LL 212
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 138 NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYL--ENSKGFNILNYAVLRGNMKVTEKILAL 195
+ DT +H AV E LL + YL +N G L+ A + G EK+ A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 196 NRNLATVPKTSDGFTPLHVAC 216
+ + G T LH+AC
Sbjct: 68 GAGVLVAERG--GHTALHLAC 86
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 29/62 (46%), Gaps = 12/62 (19%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK------RTPLMAAVGQGQTSVINY 260
DG TPLHVA + E+V LL + DL K RTPL AV SV+
Sbjct: 157 DGHTPLHVAVIHKDAEMVRLLRDA------GADLNKPEPTCGRTPLHLAVEAQAASVLEL 210
Query: 261 LM 262
L+
Sbjct: 211 LL 212
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%)
Query: 138 NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYL--ENSKGFNILNYAVLRGNMKVTEKILAL 195
+ DT +H AV E LL + YL +N G L+ A + G EK+ A
Sbjct: 8 DGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA 67
Query: 196 NRNLATVPKTSDGFTPLHVAC 216
+ + G T LH+AC
Sbjct: 68 GAGVLVAERG--GHTALHLAC 86
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 176 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 212
Score = 29.6 bits (65), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL + NIQDN TP+H AV+ + + +L+ + +L G L +L
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAA 132
Query: 185 NMKVTEKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ V + L + A V D G + LH A ++++ +L+ K N + + ++
Sbjct: 133 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREE 191
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQD 272
TPL A +G L+ DI D
Sbjct: 192 TPLFLAAREGSYETAKVLLDHFANRDITD 220
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 32.7 bits (73), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 177 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 213
Score = 29.6 bits (65), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 64/149 (42%), Gaps = 5/149 (3%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL + NIQDN TP+H AV+ + + +L+ + +L G L +L
Sbjct: 77 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPL---ILAA 133
Query: 185 NMKVTEKILALNRNLATVPKTSD-GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ V + L + A V D G + LH A ++++ +L+ K N + + ++
Sbjct: 134 RLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-KNGANKDMQNNREE 192
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQD 272
TPL A +G L+ DI D
Sbjct: 193 TPLFLAAREGSYETAKVLLDHFANRDITD 221
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL+NG N ++Q+N ++TP+ A +G E +LL H
Sbjct: 144 LLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH 180
>pdb|2CIM|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CIM|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-trna
Synthetase
pdb|2CJ9|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJ9|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With An Analog Of Seryladenylate
pdb|2CJB|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
pdb|2CJB|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Serine
Length = 522
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 52/128 (40%), Gaps = 23/128 (17%)
Query: 116 GILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH--PEVNLYLENSKG 173
G++ + + L+ + + TP DA+A FEE LL+ PE
Sbjct: 13 GLVPRGSHMKLQFNLKAYFKTSADPTPAKDAIAALFEEANSTLLTRGAPEGQ-------- 64
Query: 174 FNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
KVTE L +R T+ S + +H A F ++ E L +KYK+
Sbjct: 65 -----------GAKVTEWKLGEDRIELTL--QSGRYVRVHDAIFRLRKQLAEALGKKYKI 111
Query: 234 NINALDLK 241
I ++++
Sbjct: 112 GIRGIEVE 119
>pdb|3JUE|A Chain A, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
pdb|3JUE|B Chain B, Crystal Structure Of Arfgap And Ank Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL+NG NVN D+ P+H A G + L L +L +S+G + L A+
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETA 312
Query: 185 NMKV 188
N +
Sbjct: 313 NADI 316
>pdb|4F1P|A Chain A, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
pdb|4F1P|B Chain B, Crystal Structure Of Mutant S554d For Arfgap And Ank
Repeat Domain Of Acap1
Length = 368
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL+NG NVN D+ P+H A G + L L +L +S+G + L A+
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETA 312
Query: 185 NMKV 188
N +
Sbjct: 313 NADI 316
>pdb|3T9K|A Chain A, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
pdb|3T9K|B Chain B, Crystal Structure Of Acap1 C-portion Mutant S554d Fused
With Integrin Beta1 Peptide
Length = 390
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 1/64 (1%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL+NG NVN D+ P+H A G + L L +L +S+G + L A+
Sbjct: 254 LLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR-GADLGARDSEGRDPLTIAMETA 312
Query: 185 NMKV 188
N +
Sbjct: 313 NADI 316
>pdb|3UXG|A Chain A, Crystal Structure Of Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 1.3, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
+ +GF L +A G ++ +L + + K + + L +A + +IV LL+E
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE--SALSLASTGGYTDIVGLLLE 90
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
+ V+IN D TPL+ AV + L+ R L + G
Sbjct: 91 R-DVDINIYDWNGGTPLLYAVHGNHVKCVEALLARGADLTTEADSG 135
>pdb|2CJA|A Chain A, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
pdb|2CJA|B Chain B, Crystal Structure Of Methanosarcina Barkeri Seryl-Trna
Synthetase Complexed With Atp
Length = 522
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 43/103 (41%), Gaps = 23/103 (22%)
Query: 141 TPMHDAVAKGFEEIQLLLLSH--PEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRN 198
TP DA+A FEE LL+ PE KVTE L +R
Sbjct: 38 TPAKDAIAALFEEANSTLLTRGAPEGQ-------------------GAKVTEWKLGEDRI 78
Query: 199 LATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
T+ S + +H A F ++ E L +KYK+ I ++++
Sbjct: 79 ELTL--QSGRYVRVHDAIFRLRKQLAEALGKKYKIGIRGIEVE 119
>pdb|3V30|A Chain A, Crystal Structure Of The Peptide Bound Complex Of The
Ankyrin Repeat Domains Of Human Rfxank
Length = 172
Score = 31.6 bits (70), Expect = 1.4, Method: Composition-based stats.
Identities = 27/106 (25%), Positives = 47/106 (44%), Gaps = 3/106 (2%)
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
+ +GF L +A G ++ +L + + K + + L +A + +IV LL+E
Sbjct: 33 DERGFTPLIWASAFGEIETVRFLLEWGADPHILAKERE--SALSLASTGGYTDIVGLLLE 90
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
+ V+IN D TPL+ AV + L+ R L + G
Sbjct: 91 R-DVDINIYDWNGGTPLLYAVRGNHVKCVEALLARGADLTTEADSG 135
>pdb|3L11|A Chain A, Crystal Structure Of The Ring Domain Of Rnf168
Length = 115
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 8/70 (11%)
Query: 381 LALDEKLLARRSSCQNVPVECAVCSELGVANVLLKPCNHAVACEEC-SSRMKKCIMCKTF 439
+AL + + S CQ C +C E+ V V L PCNH + C+ C S ++K +C F
Sbjct: 3 MALPKDAIPSLSECQ-----CGICMEILVEPVTL-PCNHTL-CKPCFQSTVEKASLCCPF 55
Query: 440 IEMRVTTDGR 449
RV++ R
Sbjct: 56 CRRRVSSWTR 65
>pdb|3IYK|A Chain A, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|B Chain B, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|C Chain C, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|D Chain D, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|E Chain E, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
pdb|3IYK|F Chain F, Bluetongue Virus Structure Reveals A Sialic Acid Binding
Dom Amphipathic Helices And A Central Coiled Coil In The
Outer Proteins
Length = 526
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 11/76 (14%)
Query: 163 EVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIE 222
E N +E+ K F+ILN AV N +TE+ L + R LAT + G H E
Sbjct: 137 EANAEIEDEKQFDILNKAVTSYNKILTEEDLQM-RRLATALQKEIG--------ERTHAE 187
Query: 223 IVELLVEKYKVNINAL 238
V +V++Y+ I+AL
Sbjct: 188 TV--MVKEYRDKIDAL 201
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.0 bits (66), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 3 LLHI---LAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+LH+ +A Q + ++ ++ G + G+TALHYAA N+PD +++
Sbjct: 174 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 30/52 (57%), Gaps = 3/52 (5%)
Query: 3 LLHI---LAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+LH+ +A Q + ++ ++ G + G+TALHYAA N+PD +++
Sbjct: 193 VLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 244
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,902,310
Number of Sequences: 62578
Number of extensions: 784368
Number of successful extensions: 2503
Number of sequences better than 100.0: 117
Number of HSP's better than 100.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 1618
Number of HSP's gapped (non-prelim): 611
length of query: 644
length of database: 14,973,337
effective HSP length: 105
effective length of query: 539
effective length of database: 8,402,647
effective search space: 4529026733
effective search space used: 4529026733
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)