RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2733
(644 letters)
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 88.6 bits (220), Expect = 6e-21
Identities = 38/111 (34%), Positives = 59/111 (53%), Gaps = 3/111 (2%)
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
+ G L+ A G+++V + +L ++ K +DG TPLH+A N H+EIV+LL+E
Sbjct: 4 DEDGRTPLHLAASNGHLEVVKLLLENGADVNA--KDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
K ++NA D TPL A G V+ L+ ++ +D DG LH
Sbjct: 62 K-GADVNARDKDGNTPLHLAARNGNLDVVKLLLKHGADVNARDKDGRTPLH 111
Score = 86.7 bits (215), Expect = 3e-20
Identities = 39/130 (30%), Positives = 72/130 (55%), Gaps = 4/130 (3%)
Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
N +D + TP+H A + G E+ LLL + ++ +++ G L+ A G++++ + +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENG-ADVNAKDNDGRTPLHLAAKNGHLEIVKLL 59
Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
L ++ + DG TPLH+A N ++++V+LL+ K+ ++NA D RTPL A
Sbjct: 60 LEKGADVNA--RDKDGNTPLHLAARNGNLDVVKLLL-KHGADVNARDKDGRTPLHLAAKN 116
Query: 253 GQTSVINYLM 262
G V+ L+
Sbjct: 117 GHLEVVKLLL 126
Score = 77.0 bits (190), Expect = 7e-17
Identities = 38/105 (36%), Positives = 58/105 (55%), Gaps = 3/105 (2%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL NG +VN +DN+ TP+H A G EI LLL ++ + G L+ A
Sbjct: 25 LLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG-ADVNARDKDGNTPLHLAARN 83
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
GN+ V + +L ++ + DG TPLH+A N H+E+V+LL+
Sbjct: 84 GNLDVVKLLLKHGADVNA--RDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 72.4 bits (178), Expect = 3e-15
Identities = 30/77 (38%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
+ DG TPLH+A N H+E+V+LL+E ++NA D RTPL A G ++ L+
Sbjct: 3 RDEDGRTPLHLAASNGHLEVVKLLLEN-GADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE 61
Query: 264 RDVALDIQDIDGNGLLH 280
+ ++ +D DGN LH
Sbjct: 62 KGADVNARDKDGNTPLH 78
Score = 55.5 bits (134), Expect = 2e-09
Identities = 40/161 (24%), Positives = 63/161 (39%), Gaps = 44/161 (27%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
+T LH+ A G +E + +LL GA V D+ G T LH AA + ++ + GA
Sbjct: 8 RTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLE---KGA 64
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
+ N + TP+ N D++ +L
Sbjct: 65 D----------------------VNARDKDGNTPL--HLAARNGNLDVVK--------LL 92
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
+K +G +VN +D + TP+H A G E+ LLL
Sbjct: 93 LK-------HGADVNARDKDGRTPLHLAAKNGHLEVVKLLL 126
Score = 38.1 bits (89), Expect = 0.002
Identities = 30/121 (24%), Positives = 48/121 (39%), Gaps = 20/121 (16%)
Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH-----------FLFI 284
NA D RTPL A G V+ L+ ++ +D DG LH L +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLL 60
Query: 285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLD 344
+K ++ + P++ G L V L+KHGA ++ + + + PL
Sbjct: 61 EKGADVNARDKDGNTPLH-LAARNG--------NLDVVKLLLKHGADVNARDKDGRTPLH 111
Query: 345 L 345
L
Sbjct: 112 L 112
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 65.7 bits (161), Expect = 2e-13
Identities = 26/96 (27%), Positives = 48/96 (50%), Gaps = 5/96 (5%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L+ A GN+++ + +L + D T LH+A N ++EIV+LL+E + ++N
Sbjct: 1 LHLAAKNGNLELVKLLLEKGAD----VNLGDTDTALHLAARNGNLEIVKLLLE-HGADVN 55
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
A D T L A G ++ L+ ++++D
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 55.7 bits (135), Expect = 7e-10
Identities = 32/97 (32%), Positives = 49/97 (50%), Gaps = 8/97 (8%)
Query: 144 HDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV 202
H A G E+ +LLL +VNL L+ A GN+++ + +L ++
Sbjct: 2 HLAAKNGNLELVKLLLEKGADVNL----GDTDTALHLAARNGNLEIVKLLLEHGADVNA- 56
Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
K DG T LH+A N ++EIV+LL+E +IN D
Sbjct: 57 -KDKDGNTALHLAARNGNLEIVKLLLEHG-ADINLKD 91
Score = 53.4 bits (129), Expect = 4e-09
Identities = 23/70 (32%), Positives = 37/70 (52%), Gaps = 3/70 (4%)
Query: 212 LHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQ 271
LH+A N ++E+V+LL+EK ++N D T L A G ++ L+ ++ +
Sbjct: 1 LHLAAKNGNLELVKLLLEKG-ADVNLGD--TDTALHLAARNGNLEIVKLLLEHGADVNAK 57
Query: 272 DIDGNGLLHF 281
D DGN LH
Sbjct: 58 DKDGNTALHL 67
Score = 43.8 bits (104), Expect = 1e-05
Identities = 19/50 (38%), Positives = 28/50 (56%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G+TALH AA + +++
Sbjct: 30 TALHLAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKL 79
Score = 41.1 bits (97), Expect = 1e-04
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNL 166
LL +G +VN +D + +T +H A G EI +LLL ++NL
Sbjct: 47 LLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEHGADINL 89
Score = 36.1 bits (84), Expect = 0.006
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
LH+ A G +E + +LL +GA V D DTALH AA + +++
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKL 46
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 60.4 bits (147), Expect = 1e-09
Identities = 52/175 (29%), Positives = 77/175 (44%), Gaps = 24/175 (13%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL-LLSHPEVNLYLENSKGFNILNYAVL 182
+LL G NVN DNN TP+ A++K ++ L N+ ++NS G N+L+ L
Sbjct: 91 LLLEYGANVNAPDNNGITPLLYAISKKSNSYSIVEYLLDNGANVNIKNSDGENLLHL-YL 149
Query: 183 RGNMKVTEKILAL------NRNLAT---------VP---KTSDGFTPLHVACFNDHIEIV 224
N K+ KIL L + N VP K GFTPLH A +N++ E V
Sbjct: 150 ESN-KIDLKILKLLIDKGVDINAKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFV 208
Query: 225 ELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
+ L++ N N ++ TPL A+ + L+ I+ I L
Sbjct: 209 KYLLDL-GANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN--GPSIKTIIETLLY 260
Score = 57.4 bits (139), Expect = 1e-08
Identities = 49/189 (25%), Positives = 77/189 (40%), Gaps = 31/189 (16%)
Query: 125 LLRNGCNVNIQDNNQDTPMH-----DAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
LL NG ++N N TP+H +EI LLL + N+ ++ G L Y
Sbjct: 54 LLDNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEY-GANVNAPDNNGITPLLY 112
Query: 180 AVLR--GNMKVTEKILALNRNLATVPKTSDGFTPLHVA--CFNDHIEIVELLVEK----- 230
A+ + + + E +L N K SDG LH+ ++I++LL++K
Sbjct: 113 AISKKSNSYSIVEYLLDNGAN--VNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDIN 170
Query: 231 ----------YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL-- 278
Y V IN D+ TPL AV + YL+ D+ + ++ G
Sbjct: 171 AKNRVNYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLL--DLGANPNLVNKYGDTP 228
Query: 279 LHFLFIKKN 287
LH + N
Sbjct: 229 LHIAILNNN 237
>gnl|CDD|215625 PLN03192, PLN03192, Voltage-dependent potassium channel;
Provisional.
Length = 823
Score = 59.5 bits (144), Expect = 4e-09
Identities = 30/110 (27%), Positives = 56/110 (50%), Gaps = 15/110 (13%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL-----LSHPEVNLYLENSKGFNILN 178
VLL++ CNV+I+D N +T + +A++ +I +L +S P ++L
Sbjct: 576 VLLKHACNVHIRDANGNTALWNAISAKHHKIFRILYHFASISDPHA--------AGDLLC 627
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
A R ++ +++L N+ + + G T L VA DH+++V LL+
Sbjct: 628 TAAKRNDLTAMKELLKQGLNVDS--EDHQGATALQVAMAEDHVDMVRLLI 675
Score = 34.5 bits (79), Expect = 0.23
Identities = 24/90 (26%), Positives = 39/90 (43%), Gaps = 8/90 (8%)
Query: 174 FNILNYAVLRGNMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELLVEKY 231
N+L A GN + E++L + P D G TPLH+A + + V +L+ K+
Sbjct: 527 SNLLTVAST-GNAALLEELLKAKLD----PDIGDSKGRTPLHIAASKGYEDCVLVLL-KH 580
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYL 261
N++ D T L A+ + L
Sbjct: 581 ACNVHIRDANGNTALWNAISAKHHKIFRIL 610
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 55.2 bits (132), Expect = 2e-08
Identities = 43/178 (24%), Positives = 79/178 (44%), Gaps = 8/178 (4%)
Query: 103 NEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP 162
+ L A + + + L ++ +D + P+H A +KG ++I LLL+
Sbjct: 37 KKLNLYLELALLPAASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASG 96
Query: 163 EVNLYLENSKGFNILNYAVLRGNMK-----VTEKILALNRNLA-TVPKTSDGFTPLHVAC 216
++ +++ G L+ A L GN V + +L +L + DG TPLH A
Sbjct: 97 -ADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAA 155
Query: 217 FNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
N +IVELL+E + N+ + T L A G+ ++ L+ + + L + +
Sbjct: 156 LNGDADIVELLLE-AGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFN 212
Score = 35.2 bits (80), Expect = 0.078
Identities = 16/62 (25%), Positives = 22/62 (35%), Gaps = 1/62 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGNKPDAIQINSHVSGAN 59
T LH A G + + +LL GA + G TAL AA G + +
Sbjct: 148 NTPLHWAALNGDADIVELLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLS 207
Query: 60 RS 61
Sbjct: 208 LL 209
Score = 34.0 bits (77), Expect = 0.18
Identities = 40/193 (20%), Positives = 64/193 (33%), Gaps = 32/193 (16%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANRS 61
LH A +G + + +LLA GA V D GDT LH AA P I
Sbjct: 75 LPLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIE--------- 125
Query: 62 RKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILIKQ 121
V ++ ++L N L + +++
Sbjct: 126 -----------VAKLLLEAGADLDVNNLRDEDGNTP---------LHWAALNGDADIVE- 164
Query: 122 DFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
+LL G + N +++ T + A G E+ LLL L+ +
Sbjct: 165 --LLLEAGADPNSRNSYGVTALDPAAKNGRIELVKLLLDKGLHLSLLKFNLEGVANANVS 222
Query: 182 LRGNMKVTEKILA 194
R + +T I+A
Sbjct: 223 KRNILNLTSLIIA 235
Score = 29.4 bits (65), Expect = 5.5
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 31/164 (18%)
Query: 219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL 278
LL ++ A DL R PL +A +G ++ L+ ++ +D DG+
Sbjct: 50 AASLSELLLKLIVDRHLAARDLDGRLPLHSAASKGDDKIVKLLLASGADVNAKDADGDTP 109
Query: 279 LHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLS---LE 335
LH + N + I V L++ GA L L
Sbjct: 110 LHLAALNGNPPEGNI--------------------------EVAKLLLEAGADLDVNNLR 143
Query: 336 NNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAIS 379
+ + PL + +I+E E D + N+ VTA+
Sbjct: 144 DEDGNTPLHWAALNGD--ADIVELLLEAGADPNSRNSYGVTALD 185
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 56.5 bits (136), Expect = 2e-08
Identities = 50/177 (28%), Positives = 81/177 (45%), Gaps = 15/177 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI---LNYA 180
+L G +VNI+D+N P+H A+ F +I LLL E Y N K N L+ A
Sbjct: 142 MLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLL---EKGAYA-NVKDNNGESPLHNA 197
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
G+ + ++ ++ K +GFTPLH A ++ +ELL+ +IN D+
Sbjct: 198 AEYGDYACIKLLIDHGNHIMN--KCKNGFTPLHNAIIHNR-SAIELLIN--NASINDQDI 252
Query: 241 KKRTPLMAAVGQG-QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE 296
TPL A+ +I+ L+ + I+D G + F K K P+ ++
Sbjct: 253 DGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGENPIDTAF--KYINKDPVIKD 307
Score = 45.7 bits (108), Expect = 5e-05
Identities = 42/140 (30%), Positives = 70/140 (50%), Gaps = 14/140 (10%)
Query: 117 ILIKQDF-----VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
I IK +F +LL G N++DNN ++P+H+A G LL+ H ++ +
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDHGN-HIMNKCK 221
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTS-DGFTPLHVAC-FNDHIEIVELLVE 229
GF L+ A++ N E ++ N A++ DG TPLH A I+I+++L+
Sbjct: 222 NGFTPLHNAIIH-NRSAIELLI----NNASINDQDIDGSTPLHHAINPPCDIDIIDILL- 275
Query: 230 KYKVNINALDLKKRTPLMAA 249
+K +I+ D K P+ A
Sbjct: 276 YHKADISIKDNKGENPIDTA 295
Score = 37.6 bits (87), Expect = 0.017
Identities = 35/167 (20%), Positives = 79/167 (47%), Gaps = 18/167 (10%)
Query: 125 LLRNGCN-VNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
+++N N +NI + TP+ DA+ G +I +L + ++N N+K + L A+
Sbjct: 20 IIKNKGNCINISVDETTTPLIDAIRSGDAKIVELFIKHGADINHI--NTKIPHPLLTAIK 77
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G + + ++ + + +P + C ++++ +++ +++N D +
Sbjct: 78 IGAHDIIKLLIDNGVDTSILP----------IPCIEK--DMIKTILDC-GIDVNIKDAEL 124
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
+T L A+ +G I L ++I+D +G +H + IK NF+
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIH-IAIKHNFF 170
Score = 29.9 bits (67), Expect = 5.1
Identities = 51/234 (21%), Positives = 92/234 (39%), Gaps = 33/234 (14%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSG-AN 59
KT LH +G +E + +L GA V DD G +H A N D I++ AN
Sbjct: 125 KTFLHYAIKKGDLESIKMLFEYGADVNIEDDNGCYPIHIAIKHNFFDIIKLLLEKGAYAN 184
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMK----FIPRMNEDMLDTPSAECS 115
+ H + + + + + K F P N + + + E
Sbjct: 185 VKDNNGESPLHNAA---EYGDYACIKLLIDHGNHIMNKCKNGFTPLHNAIIHNRSAIE-- 239
Query: 116 GILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
LL N ++N QD + TP+H A+ + + +L + + ++ ++++KG N
Sbjct: 240 ---------LLINNASINDQDIDGSTPLHHAINPPCDIDIIDILLYHKADISIKDNKGEN 290
Query: 176 ILNYAVLRGN-MKVTEKILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
++ A N V + I+A L + + + F +HIEI +
Sbjct: 291 PIDTAFKYINKDPVIKDIIANAVLIKEADKLKDSD----------FLEHIEIKD 334
>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger).
Length = 49
Score = 50.1 bits (120), Expect = 3e-08
Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 5/49 (10%)
Query: 477 EMNTCTICMERCRNTIFL-CGH-GTCDVCAKTL---KFCHMCRKLIEQR 520
E + C IC+ER RN +FL CGH C+ CAK L K C +CR+ IE
Sbjct: 1 EDDLCVICLERPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIESV 49
Score = 45.4 bits (108), Expect = 1e-06
Identities = 19/45 (42%), Positives = 25/45 (55%), Gaps = 4/45 (8%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRM---KKCIMCKTFIE 441
C +C E NV+ PC H CEEC+ R+ KKC +C+ IE
Sbjct: 4 LCVICLE-RPRNVVFLPCGHLCLCEECAKRLRSKKKCPICRQPIE 47
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 49.9 bits (120), Expect = 3e-08
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ 50
T LH A G +E + LL +G + D+ G+TALH AA + ++
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLK 51
Score = 48.0 bits (115), Expect = 1e-07
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 1/54 (1%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
G T LH A + +E+V+ L+EK V+IN D T L A G V+ L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEK-GVDINRTDEDGNTALHIAAENGNLEVLKLL 53
Score = 40.3 bits (95), Expect = 8e-05
Identities = 15/56 (26%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
G L+ A + G +++ + +L ++ DG T LH+A N ++E+++LL+
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINRTD--EDGNTALHIAAENGNLEVLKLLL 54
Score = 31.8 bits (73), Expect = 0.091
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLL 158
LL G ++N D + +T +H A G E+ +LLL
Sbjct: 19 YLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 30.7 bits (70), Expect = 0.22
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 139 QDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKIL 193
T +H A G E ++ LL ++N + G L+ A GN++V + +L
Sbjct: 1 GRTALHKAAISGRLELVKYLLEKGVDINR--TDEDGNTALHIAAENGNLEVLKLLL 54
Score = 29.5 bits (67), Expect = 0.52
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
RT L A G+ ++ YL+ + V ++ D DGN LH
Sbjct: 2 RTALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHI 40
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 45.2 bits (108), Expect = 8e-07
Identities = 17/33 (51%), Positives = 24/33 (72%), Gaps = 1/33 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
DG TPLH+A N H+E+V+LL+E ++NA D
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLE-AGADVNARD 32
Score = 29.1 bits (66), Expect = 0.55
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
TPL A G V+ L+ ++ +D
Sbjct: 3 NTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 28.7 bits (65), Expect = 0.69
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDD 31
T LH+ A G +E + +LL GA V D
Sbjct: 4 TPLHLAARNGHLEVVKLLLEAGADVNARDK 33
Score = 26.7 bits (60), Expect = 2.9
Identities = 6/19 (31%), Positives = 11/19 (57%)
Query: 33 GDTALHYAAFGNKPDAIQI 51
G+T LH AA + +++
Sbjct: 2 GNTPLHLAARNGHLEVVKL 20
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 50.4 bits (120), Expect = 2e-06
Identities = 48/166 (28%), Positives = 75/166 (45%), Gaps = 9/166 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH---PEVNLYLENSKGFNILNYAV 181
LL G N N + + +P+ A+ E LL+ H P+V S+ L+ AV
Sbjct: 21 LLDIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESE----LHDAV 76
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G++K E++L L + V DG TPLH+A ++I++LL+ + + +
Sbjct: 77 EEGDVKAVEELLDLGKFADDV-FYKDGMTPLHLATILKKLDIMKLLI-ARGADPDIPNTD 134
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
K +PL AV G I L+ LDI+D G L K +
Sbjct: 135 KFSPLHLAVMMGDIKGIELLIDHKACLDIEDCCGCTPLIIAMAKGD 180
Score = 47.7 bits (113), Expect = 1e-05
Identities = 34/142 (23%), Positives = 73/142 (51%), Gaps = 9/142 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVN--LYLENSKGFNILNYA 180
+L+++G +++ + ++ +HDAV +G + ++ LL + Y G L+ A
Sbjct: 53 LLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGKFADDVFY---KDGMTPLHLA 109
Query: 181 VLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
+ + + + ++A + +P T D F+PLH+A I+ +ELL+ +K ++ D
Sbjct: 110 TILKKLDIMKLLIARGAD-PDIPNT-DKFSPLHLAVMMGDIKGIELLI-DHKACLDIEDC 166
Query: 241 KKRTPLMAAVGQGQTSVINYLM 262
TPL+ A+ +G ++ L+
Sbjct: 167 CGCTPLIIAMAKGDIAICKMLL 188
Score = 39.6 bits (92), Expect = 0.005
Identities = 27/107 (25%), Positives = 54/107 (50%), Gaps = 2/107 (1%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L+ G + +I + ++ +P+H AV G + LL+ H + L +E+ G L A+ +
Sbjct: 120 LLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH-KACLDIEDCCGCTPLIIAMAK 178
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G++ + + +L N+ K L A N+ I+IV L +++
Sbjct: 179 GDIAICKMLLDSGANIDYFGKNGC-VAALCYAIENNKIDIVRLFIKR 224
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 49.6 bits (119), Expect = 3e-06
Identities = 46/166 (27%), Positives = 72/166 (43%), Gaps = 16/166 (9%)
Query: 125 LLRNGCNVNIQDNNQDTP----MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
LL G +VN + TP +H + K + ++LLL + +VN GF L+
Sbjct: 33 LLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAP--ERCGFTPLHLY 90
Query: 181 VLRGNMKVTEKILA-LNRNLATVPKTSD-GFTPLHVAC--FNDHIEIVELLVEKYKVNIN 236
+ T ++ L + A V G TPLHV FN + +++ LL+ K ++N
Sbjct: 91 LYNAT---TLDVIKLLIKAGADVNAKDKVGRTPLHVYLSGFNINPKVIRLLLRK-GADVN 146
Query: 237 ALDLKKRTPLMAAVGQGQTSV--INYLMLRDVALDIQDIDGNGLLH 280
ALDL TPL + +V + L+ + D LLH
Sbjct: 147 ALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFRSLLH 192
Score = 46.6 bits (111), Expect = 3e-05
Identities = 63/300 (21%), Positives = 110/300 (36%), Gaps = 43/300 (14%)
Query: 12 CVEELNILLARGACVYYPDDAGDTALH-YAAFGNKPDAIQINSHV-SGANRSRKHIYKER 69
VEE+ LLA GA V + + G T LH Y + ++ + + +GA+ +
Sbjct: 26 TVEEVRRLLAAGADVNFRGEYGKTPLHLYLHYSSEKVKDIVRLLLEAGADVNAPERCGFT 85
Query: 70 --H---RTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDML------DTP-SAECSGI 117
H TT V +K + + D+ TP SG
Sbjct: 86 PLHLYLYNATTLDV-----------------IKLLIKAGADVNAKDKVGRTPLHVYLSGF 128
Query: 118 LIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL-LLSHPEVNLYLENSKGF 174
I + LLR G +VN D TP+ + ++LL LL ++Y + +
Sbjct: 129 NINPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAVDDRFR 188
Query: 175 NILNY--AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA---CFNDHIEIVELLVE 229
++L++ + ++ +++ + A G TPLH ++ LL+
Sbjct: 189 SLLHHHLQSFKPRARIVRELIRAGCDPAAT--DMLGNTPLHSMATGSSCKRSLVLPLLIA 246
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFY 289
++INA + +TPL A L+ ++ DGN L + N
Sbjct: 247 G--ISINARNRYGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGR 304
Score = 36.2 bits (84), Expect = 0.053
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 7/103 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEE---IQLLLLSHPEVNLYLENSKGFNILNYAV 181
L+R GC+ D +TP+H + + LL++ +N N G L+YA
Sbjct: 208 LIRAGCDPAATDMLGNTPLHSMATGSSCKRSLVLPLLIAGISINA--RNRYGQTPLHYAA 265
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIV 224
+ N + +++AL ++ V +SDG TPL + N++ V
Sbjct: 266 VFNNPRACRRLIALGADINAV--SSDGNTPLSLMVRNNNGRAV 306
Score = 33.1 bits (76), Expect = 0.52
Identities = 16/48 (33%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 2 TLLHILAYQGCVEELNI--LLARGACVYYPDDAGDTALHYAA-FGNKP 46
T LH +A + + LL G + + G T LHYAA F N
Sbjct: 224 TPLHSMATGSSCKRSLVLPLLIAGISINARNRYGQTPLHYAAVFNNPR 271
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 49.5 bits (118), Expect = 4e-06
Identities = 40/130 (30%), Positives = 60/130 (46%), Gaps = 8/130 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL G NVNI D ++P+H AV + I +LL + + + G L+ +V G
Sbjct: 187 LLSYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLEN-GASTDARDKCGNTPLHISV--G 243
Query: 185 NMKVTEKILALNRNLATVPKTSD--GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
K + + L + V S G T LH + E L+ +Y +IN+L+ K
Sbjct: 244 YCKDYDILKLLLEHGVDVNAKSYILGLTALHSSI---KSERKLKLLLEYGADINSLNSYK 300
Query: 243 RTPLMAAVGQ 252
TPL +AV Q
Sbjct: 301 LTPLSSAVKQ 310
Score = 36.0 bits (83), Expect = 0.062
Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 210 TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD 269
T LH A N + ELL+ Y N+N D +PL AV +++ L+ + D
Sbjct: 170 TALHYATENKDQRLTELLL-SYGANVNIPDKTNNSPLHHAVKHYNKPIVHILLENGASTD 228
Query: 270 IQDIDGNGLLHF 281
+D GN LH
Sbjct: 229 ARDKCGNTPLHI 240
>gnl|CDD|165207 PHA02876, PHA02876, ankyrin repeat protein; Provisional.
Length = 682
Score = 48.1 bits (114), Expect = 1e-05
Identities = 66/253 (26%), Positives = 108/253 (42%), Gaps = 15/253 (5%)
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
++ +L G +VN D+ ++TP+H A + L ++ +N KG L
Sbjct: 253 LETSLLLYDAGFSVNSIDDCKNTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPL- 311
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGF-TPLHVACFNDHIEIVELLVEKYKVNINA 237
++ N TE I L A V + TPLH A D + + + + + N+NA
Sbjct: 312 -YLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGANVNA 370
Query: 238 LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN--GLLHFLFIKKNFY---KTP 292
D +TP+ A + +IN L+ D DI+ + LHF N Y KT
Sbjct: 371 RDYCDKTPIHYAAVRNNVVIINTLL--DYGADIEALSQKIGTALHFALCGTNPYMSVKTL 428
Query: 293 ITREKSVPIYEEYLSVGGP---SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
I R +V + LS P + + L V L+ +GA ++ N Q PL + LE
Sbjct: 429 IDRGANVNSKNKDLST--PLHYACKKNCKLDVIEMLLDNGADVNAINIQNQYPLLIALEY 486
Query: 350 TSLLNEIMEHARE 362
++N ++ + E
Sbjct: 487 HGIVNILLHYGAE 499
Score = 44.3 bits (104), Expect = 2e-04
Identities = 49/174 (28%), Positives = 83/174 (47%), Gaps = 13/174 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+LL G +VN +D TP+H A +G ++ LLLS+ +VN+ + ++L AV
Sbjct: 163 MLLEGGADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALD--DLSVLECAV- 219
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
+ K + I A+ N + + K L A N+ +E LL+ ++N++D K
Sbjct: 220 --DSKNIDTIKAIIDNRSNINKND---LSLLKAIRNEDLE-TSLLLYDAGFSVNSIDDCK 273
Query: 243 RTPLMAAVGQGQTS-VINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITR 295
TPL A S ++ L+ R ++ ++I G L+ + KN Y T R
Sbjct: 274 NTPLHHASQAPSLSRLVPKLLERGADVNAKNIKGETPLYLM--AKNGYDTENIR 325
Score = 35.8 bits (82), Expect = 0.077
Identities = 19/69 (27%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 219 DHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL 278
D + I E+L+E ++NA D+ TP+ A +G ++N L+ ++I +D +
Sbjct: 156 DELLIAEMLLEG-GADVNAKDIYCITPIHYAAERGNAKMVNLLLSYGADVNIIALDDLSV 214
Query: 279 LHFLFIKKN 287
L KN
Sbjct: 215 LECAVDSKN 223
Score = 29.3 bits (65), Expect = 7.6
Identities = 41/170 (24%), Positives = 69/170 (40%), Gaps = 12/170 (7%)
Query: 1 KTLLHILAYQGC-VEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGAN 59
+T L+++A G E + L+ GA V D T LH A+ ++ I I GAN
Sbjct: 308 ETPLYLMAKNGYDTENIRTLIMLGADVNAADRLYITPLHQASTLDRNKDIVITLLELGAN 367
Query: 60 RSRKHIYKER--HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGI 117
+ + + H V + L + L+ K ++ + T
Sbjct: 368 VNARDYCDKTPIHYAAVRNNVVIINTLLDYGADIEALSQKIGTALHFALCGTNPYMSVKT 427
Query: 118 LIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG--FEEIQLLLLSHPEVN 165
LI + G NVN ++ + TP+H A K + I++LL + +VN
Sbjct: 428 LIDR-------GANVNSKNKDLSTPLHYACKKNCKLDVIEMLLDNGADVN 470
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 41.6 bits (98), Expect = 3e-05
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L+E +++NA D TPL A G ++ +L+ V L+++D DG L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDL 55
Score = 38.1 bits (89), Expect = 5e-04
Identities = 15/39 (38%), Positives = 19/39 (48%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYA 40
T LH+ A G +E + LL G + D G TAL A
Sbjct: 18 TPLHLAAKYGALELVQWLLKPGVDLNLRDSDGLTALDLA 56
Score = 37.7 bits (88), Expect = 7e-04
Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVA 215
LL H ++L + G L+ A G +++ + +L +L + SDG T L +A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVDLNL--RDSDGLTALDLA 56
Score = 36.9 bits (86), Expect = 0.001
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
L + + +G TPLH+A +E+V+ L+ K V++N D T L A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL-KPGVDLNLRDSDGLTALDLA 56
Score = 34.6 bits (80), Expect = 0.008
Identities = 23/58 (39%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 125 LLRNG-CNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYA 180
LL +G ++N D N +TP+H A G E +Q LL P V+L L +S G L+ A
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLL--KPGVDLNLRDSDGLTALDLA 56
Score = 26.5 bits (59), Expect = 5.8
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 19 LLARGACVY-YPDDAGDTALHYAAFGNKPDAIQI 51
LL G D G+T LH AA + +Q
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQW 34
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 39.9 bits (94), Expect = 8e-05
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
DG TPLH+A N ++E+V+LL+ +INA
Sbjct: 1 DGRTPLHLAAENGNLEVVKLLL-DKGADINA 30
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 44.5 bits (105), Expect = 2e-04
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
DG TPLH+AC N H+++V +L+E + + LD +TPL A G V+ L
Sbjct: 114 DGRTPLHIACANGHVQVVRVLLE-FGADPTLLDKDGKTPLELAEENGFREVVQLLS 168
Score = 31.0 bits (70), Expect = 2.2
Identities = 14/38 (36%), Positives = 19/38 (50%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
VLL G + + D + TP+ A GF E+ LL H
Sbjct: 133 VLLEFGADPTLLDKDGKTPLELAEENGFREVVQLLSRH 170
>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger).
Length = 45
Score = 39.0 bits (91), Expect = 2e-04
Identities = 13/42 (30%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
Query: 480 TCTICMERCRNTIFL--CGHGTCDVCAKTL----KFCHMCRK 515
C IC++ R+ + L CGH C C C +CR
Sbjct: 4 ECPICLDLLRDPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45
Score = 34.4 bits (79), Expect = 0.010
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 398 PVECAVCSELGVANVLLKPCNHAVACEECSSRM----KKCIMCKT 438
+EC +C +L V+L PC H V C EC R KC +C+T
Sbjct: 2 ELECPICLDLLRDPVVLTPCGH-VFCRECILRYLKKKSKCPICRT 45
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 36.5 bits (85), Expect = 0.001
Identities = 16/31 (51%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
DG TPLH+A N ++E+V+LL+E + +INA
Sbjct: 1 DGNTPLHLAARNGNLELVKLLLE-HGADINA 30
Score = 26.4 bits (59), Expect = 4.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 2 TLLHILAYQGCVEELNILLARGA 24
T LH+ A G +E + +LL GA
Sbjct: 4 TPLHLAARNGNLELVKLLLEHGA 26
>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a
specialized type of Zn-finger of 40 to 60 residues that
binds two atoms of zinc; defined by the 'cross-brace'
motif C-X2-C-X(9-39)-C-X(1-3)-
H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved
in mediating protein-protein interactions; identified in
a proteins with a wide range of functions such as viral
replication, signal transduction, and development; has
two variants, the C3HC4-type and a C3H2C3-type (RING-H2
finger), which have different cysteine/histidine
pattern; a subset of RINGs are associated with B-Boxes
(C-X2-H-X7-C-X7-C-X2-C-H-X2-H).
Length = 45
Score = 36.3 bits (84), Expect = 0.002
Identities = 15/45 (33%), Positives = 18/45 (40%), Gaps = 7/45 (15%)
Query: 480 TCTICMERCRNTIFL--CGHGTCDVCAKTL-----KFCHMCRKLI 517
C IC+E R + L CGH C C C +CR I
Sbjct: 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45
Score = 34.0 bits (78), Expect = 0.012
Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 6/46 (13%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFI 440
EC +C E V+L PC H V C C + C +C+T I
Sbjct: 1 ECPICLEEFREPVVLLPCGH-VFCRSCIDKWLKSGKNTCPLCRTPI 45
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 40.4 bits (95), Expect = 0.003
Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 20/134 (14%)
Query: 194 ALNRNLATVPKTSD---GFTPLHVACFNDHIEIVELLVEKYKVNINAL----DLKK---- 242
+ LA TS+ G T LH+A + EIV+LL+E+ ++ A K
Sbjct: 111 SGPLELANDQYTSEFTPGITALHLAAHRQNYEIVKLLLER-GASVPARACGDFFVKSQGV 169
Query: 243 ------RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITRE 296
+PL AA G S++ L + D GN LLH L ++ F E
Sbjct: 170 DSFYHGESPLNAAACLGSPSIVALLSEDPADILTADSLGNTLLHLLVMENEF--KAEYEE 227
Query: 297 KSVPIYEEYLSVGG 310
S +Y LS+
Sbjct: 228 LSCQMYNFALSLLD 241
>gnl|CDD|192485 pfam10217, DUF2039, Uncharacterized conserved protein (DUF2039).
This entry is a region of approximately 100 residues
containing three pairs of cysteine residues. The region
is conserved from plants to humans but its function is
unknown.
Length = 92
Score = 33.9 bits (78), Expect = 0.041
Identities = 21/62 (33%), Positives = 30/62 (48%), Gaps = 7/62 (11%)
Query: 455 ERCDKSKIE-RVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMC 513
+RC K +IE +V Y K + + C C ++ T+ H CD CA LK C C
Sbjct: 34 QRC-KDQIEWKVKY--GKYKPLTQPKKCNKCQQK---TVRHAYHHICDDCALKLKVCAKC 87
Query: 514 RK 515
+K
Sbjct: 88 QK 89
>gnl|CDD|202816 pfam03936, Terpene_synth_C, Terpene synthase family, metal binding
domain. It has been suggested that this gene family be
designated tps (for terpene synthase). It has been split
into six subgroups on the basis of phylogeny, called
tpsa-tpsf. tpsa includes vetispiridiene synthase, 5-epi-
aristolochene synthase, and (+)-delta-cadinene synthase.
tpsb includes (-)-limonene synthase. tpsc includes
kaurene synthase A. tpsd includes taxadiene synthase,
pinene synthase, and myrcene synthase. tpse includes
kaurene synthase B. tpsf includes linalool synthase.
Length = 270
Score = 35.4 bits (82), Expect = 0.060
Identities = 22/76 (28%), Positives = 30/76 (39%), Gaps = 6/76 (7%)
Query: 295 REKSVPIYEEYLSVGGPSNEHGILLAV-FLFLVKHGAPLSLENNNRQKPLDLILEDT-SL 352
+ VP +EEYL G S +LL + FL + E + L + L
Sbjct: 161 KGGHVPSFEEYLENGRVSIGAPLLLLLSFLGMGDSAGEEPFEWLKSRPKLVKLSSLILRL 220
Query: 353 LNEIM----EHAREYV 364
LN+I E AR V
Sbjct: 221 LNDIASYEKEMARGEV 236
>gnl|CDD|165103 PHA02736, PHA02736, Viral ankyrin protein; Provisional.
Length = 154
Score = 34.1 bits (78), Expect = 0.078
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
G TPLH+A + + E+ L + VN+ L+ +TP A + ++N L
Sbjct: 91 FGNTPLHIAVYTQNYELATWLCNQPGVNMEILNYAFKTPYYVACERHDAKMMNIL 145
Score = 27.9 bits (62), Expect = 9.4
Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 17/77 (22%)
Query: 113 ECSGILIKQDFV--------LLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSHPE 163
+C I+ D L+ G ++N ++ +TP+H AV E+ L + P
Sbjct: 57 QCVHIVSNPDKADPQEKLKLLMEWGADINGKERVFGNTPLHIAVYTQNYELATWLCNQPG 116
Query: 164 VNLYLENSKGFNILNYA 180
VN+ ILNYA
Sbjct: 117 VNM--------EILNYA 125
>gnl|CDD|214546 smart00184, RING, Ring finger. E3 ubiquitin-protein ligase
activity is intrinsic to the RING domain of c-Cbl and is
likely to be a general function of this domain; Various
RING fingers exhibit binding activity towards E2
ubiquitin-conjugating enzymes (Ubc' s).
Length = 40
Score = 30.2 bits (68), Expect = 0.22
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 7/40 (17%)
Query: 481 CTICMERCRNTIFL--CGHGTCDVCAKTL-----KFCHMC 513
C IC+E + CGH C C + C +C
Sbjct: 1 CPICLEEYLKDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40
Score = 30.2 bits (68), Expect = 0.28
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 6/41 (14%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEEC-----SSRMKKCIMC 436
C +C E + + ++ PC H C C S C +C
Sbjct: 1 CPICLEEYLKDPVILPCGHTF-CRSCIRKWLESGNNTCPIC 40
>gnl|CDD|220641 pfam10235, Cript, Microtubule-associated protein CRIPT. The CRIPT
protein is a cytoskeletal protein involved in
microtubule production. The C-terminal domain is
essential for binding to the PDZ3 domain of the SAP90
protein, one of a super-family of PDZ-containing
proteins that play an important role in coupling the
membrane ion channels with their signalling partners.
SAP90 is concentrated in the post synaptic density of
glutamatergic neurons.
Length = 89
Score = 29.0 bits (65), Expect = 2.0
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 479 NTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLI 517
+ C IC + + G C CA C MC K I
Sbjct: 44 SKCKIC----KTKVHQKGSKYCQRCAYKKGICAMCGKKI 78
>gnl|CDD|227719 COG5432, RAD18, RING-finger-containing E3 ubiquitin ligase [Signal
transduction mechanisms].
Length = 391
Score = 30.8 bits (69), Expect = 2.0
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
Query: 472 ISEIEEMNTCTICMERCR-NTIFLCGHGTCDVCAK----TLKFCHMCR 514
+ ++ M C IC R CGH C +C + T FC +CR
Sbjct: 19 LKGLDSMLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCR 66
>gnl|CDD|173837 cd00868, Terpene_cyclase_C1, Terpene cyclases, Class 1. Terpene
cyclases, Class 1 (C1) of the class 1 family of
isoprenoid biosynthesis enzymes, which share the
'isoprenoid synthase fold' and convert linear,
all-trans, isoprenoids, geranyl (C10)-, farnesyl (C15)-,
or geranylgeranyl (C20)-diphosphate into numerous cyclic
forms of monoterpenes, diterpenes, and sesquiterpenes.
Also included in this CD are the cis-trans terpene
cyclases such as trichodiene synthase. The class I
terpene cyclization reactions proceed via electrophilic
alkylations in which a new carbon-carbon single bond is
generated through interaction between a highly reactive
electron-deficient allylic carbocation and an
electron-rich carbon-carbon double bond. The catalytic
site consists of a large central cavity formed by mostly
antiparallel alpha helices with two aspartate-rich
regions located on opposite walls. These residues
mediate binding of prenyl phosphates via bridging Mg2+
ions, inducing proposed conformational changes that
close the active site to solvent, stabilizing reactive
carbocation intermediates. Mechanistically and
structurally distinct, class II terpene cyclases and
cis-IPPS are not included in this CD. Taxonomic
distribution includes bacteria, fungi and plants.
Length = 284
Score = 30.4 bits (69), Expect = 2.8
Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)
Query: 295 REKSVPIYEEYLSVGGPSNEHGILLA-VFLFLVKHGAPLSLENNNRQKPLDLILEDTS-L 352
E VP +EEYL S + LLA FL + + E L L
Sbjct: 146 NEGYVPSFEEYLENRRVSIGYPPLLALSFLGMGDILPEEAFEWLPSYPKLVRASSTIGRL 205
Query: 353 LNEIMEHAREYVTDLTNENNKVVTAISQLALDEKL 387
LN+I + +E +V ++ + +
Sbjct: 206 LNDIASYEKE------IARGEVANSVECYMKEYGV 234
>gnl|CDD|222931 PHA02798, PHA02798, ankyrin-like protein; Provisional.
Length = 489
Score = 30.6 bits (69), Expect = 3.0
Identities = 37/121 (30%), Positives = 58/121 (47%), Gaps = 11/121 (9%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVA-----KGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
+ G NVN DN TP+ ++ K +I +L+ + ++ +NS G L
Sbjct: 57 FINLGANVNGLDNEYSTPLCTILSNIKDYKHMLDIVKILIEN-GADINKKNSDGETPLYC 115
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTS-DGFTPLHVACFNDH---IEIVELLVEKYKVNI 235
+ G + E +L + N A DGFT L V ++H IEI++LL+EK V+I
Sbjct: 116 LLSNGYINNLEILLFMIENGADTTLLDKDGFTMLQVYLQSNHHIDIEIIKLLLEK-GVDI 174
Query: 236 N 236
N
Sbjct: 175 N 175
>gnl|CDD|146345 pfam03660, PHF5, PHF5-like protein. This family of proteins the
superfamily of PHD-finger proteins. At least one
example, from mouse, may act as a chromatin-associated
protein. The S. pombe ini1 gene is essential, required
for splicing. It is localised in the nucleus, but not
detected in the nucleolus and can be complemented by
human ini1.
Length = 105
Score = 28.8 bits (65), Expect = 3.1
Identities = 13/45 (28%), Positives = 21/45 (46%), Gaps = 8/45 (17%)
Query: 394 CQNVPVECAVCSELGVANVLLKPCNHAVACEECS--SRMKKCIMC 436
C+ +C +C + ++P C+ECS S KCI+C
Sbjct: 22 CEKCDGKCPIC------DSYVRPTTKVRICDECSFGSLGNKCIIC 60
>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed.
Length = 277
Score = 30.1 bits (68), Expect = 3.5
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLML--------RDVALDIQDIDGN 276
N+ L TP+ A+ G+ + YL + R++ DI+DI+G+
Sbjct: 132 NVVVALLTGATPIYGAIAVGRIGLAGYLAICAFLVNVAREIMKDIEDIEGD 182
>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING
Zn-finger [General function prediction only].
Length = 493
Score = 30.0 bits (67), Expect = 4.1
Identities = 16/52 (30%), Positives = 20/52 (38%), Gaps = 7/52 (13%)
Query: 470 SKISEIEEMNTCTICMERCR-NTIFLCGHGTCDVCAKTLKF------CHMCR 514
S EE C IC + + CGH C CA L+ C +CR
Sbjct: 53 SADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCR 104
>gnl|CDD|180559 PRK06418, PRK06418, transcription elongation factor NusA-like
protein; Validated.
Length = 166
Score = 29.2 bits (66), Expect = 4.7
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 500 CDVCAKTLKFCHMCRKLIEQ 519
C+VC KT C C+ L++
Sbjct: 6 CEVCVKTGLLCPRCQSLLDS 25
>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger). The
C3HC4 type zinc-finger (RING finger) is a cysteine-rich
domain of 40 to 60 residues that coordinates two zinc
ions, and has the consensus sequence:
C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C
where X is any amino acid. Many proteins containing a
RING finger play a key role in the ubiquitination
pathway.
Length = 40
Score = 26.3 bits (58), Expect = 5.2
Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 6/41 (14%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMC 436
C +C E V + PC H C +C C +C
Sbjct: 1 CPICLEEPKDPVTILPCGHLF-CSKCILSWLESGNVTCPLC 40
>gnl|CDD|241273 cd01240, PH_GRK2_subgroup, G Protein-Coupled Receptor Kinase 2
subgroup pleckstrin homology (PH) domain. GRKs are a
family of serine-threonine kinases which phosphorylates
activated G-protein coupled receptors leading to the
release of the previously bound heterotrimeric G protein
agonist and thus signal termination. There are seven
mammalian GRKs (GRK1-7) grouped into three subfamilies:
GRK1 (GRK1 and 7), GRK2 (GRK2 and 3), and GRK4 (GRK4-6).
GRKs have three functional components: an N-terminal
Regulators of G-protein signaling (RGS) which interacts
with the seven-trans-membrane helical receptor protein
and/or other membrane targets, a central catalytic
protein kinase C (PKc) domain, and a C-terminal section
containing a autophosphorylation region and a variable
region that mediates membrane association. In both GRK2
(also known as beta-adrenergic receptor kinase-1) and
GRK3 (beta-adrenergic receptor kinase-2), the C-terminal
variable region contains a PH domain which gives binding
specificity to Gbetagamma proteins. The GRK2 PH domain
has an extended C-terminal helix, which mediates
interactions with G beta gamma subunits. PH domains have
diverse functions, but in general are involved in
targeting proteins to the appropriate cellular location
or in the interaction with a binding partner. They share
little sequence conservation, but all have a common
fold, which is electrostatically polarized. Less than
10% of PH domains bind phosphoinositide phosphates
(PIPs) with high affinity and specificity. PH domains
are distinguished from other PIP-binding domains by
their specific high-affinity binding to PIPs with two
vicinal phosphate groups: PtdIns(3,4)P2, PtdIns(4,5)P2
or PtdIns(3,4,5)P3 which results in targeting some PH
domain proteins to the plasma membrane. A few display
strong specificity in lipid binding. Any specificity is
usually determined by loop regions or insertions in the
N-terminus of the domain, which are not conserved across
all PH domains. PH domains are found in cellular
signaling proteins such as serine/threonine kinase,
tyrosine kinases, regulators of G-proteins, endocytotic
GTPases, adaptors, as well as cytoskeletal associated
molecules and in lipid associated enzymes.
Length = 119
Score = 28.0 bits (63), Expect = 6.4
Identities = 13/47 (27%), Positives = 23/47 (48%), Gaps = 9/47 (19%)
Query: 424 EECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLES 470
EE + +KCI+ +++ G+ I RCD S+ E V + +
Sbjct: 58 EETQIKGEKCIL------LKLKDGGKQF--ILRCD-SEPELVQWKKE 95
>gnl|CDD|148635 pfam07139, DUF1387, Protein of unknown function (DUF1387). This
family represents a conserved region approximately 300
residues long within a number of hypothetical proteins
of unknown function that seem to be restricted to
mammals.
Length = 301
Score = 29.2 bits (65), Expect = 7.5
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 424 EECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIERVNYLESKISEIEEM 478
EE S +KK + +TF E++ R V + DK K E + LES+ + EE+
Sbjct: 177 EEMDSSIKK--IKQTFAELQSCLMDREVALLAEMDKVKAEAMEILESRQKKAEEL 229
>gnl|CDD|235772 PRK06290, PRK06290, aspartate aminotransferase; Provisional.
Length = 410
Score = 28.9 bits (65), Expect = 8.6
Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 19/107 (17%)
Query: 144 HDA--VAKGFEEIQLLLLSHP---EVNLYLEN-SKGFNILNY--AVLRGNMKVTEKILAL 195
DA A F+ L LS P EV + + + SK +N+ + A + GN +
Sbjct: 217 QDAAYAALTFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGWRLAFVVGNELIV------ 270
Query: 196 NRNLATVPKTSDG--FTPLHVACFN--DHIEIVELLVEKYKVNINAL 238
+ ATV +D F + A DH EI E + EKY ++ L
Sbjct: 271 -KAFATVKDNNDSGQFIAIQKAGIYALDHPEITEKIREKYSRRLDKL 316
>gnl|CDD|224268 COG1349, GlpR, Transcriptional regulators of sugar metabolism
[Transcription / Carbohydrate transport and metabolism].
Length = 253
Score = 28.7 bits (65), Expect = 9.0
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 7/68 (10%)
Query: 478 MNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINISRAFVSPD----QN 533
+N +E+ + L G GT V K+ F + ++ N +AF+ D +
Sbjct: 123 LNIAAALLEKPNIEVILLG-GT--VRKKSGSFVGPLAEEFLRQFNFDKAFIGADGIDLEG 179
Query: 534 GNTTSNTM 541
G TT N
Sbjct: 180 GLTTFNEE 187
>gnl|CDD|165089 PHA02716, PHA02716, CPXV016; CPX019; EVM010; Provisional.
Length = 764
Score = 29.1 bits (65), Expect = 9.3
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKG 150
L NG NVN+Q+N+ TP+H + G
Sbjct: 198 LCNNGVNVNLQNNHLITPLHTYLITG 223
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 32,041,989
Number of extensions: 3123137
Number of successful extensions: 2675
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2587
Number of HSP's successfully gapped: 111
Length of query: 644
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 541
Effective length of database: 6,369,140
Effective search space: 3445704740
Effective search space used: 3445704740
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (27.6 bits)