RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2733
(644 letters)
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 123 bits (311), Expect = 2e-30
Identities = 44/157 (28%), Positives = 71/157 (45%), Gaps = 4/157 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL+ G + N+ + +TP+H A G E+ LL + + + + L+ A G
Sbjct: 33 LLQRGASPNVSNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLHCAARIG 91
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ + + +L N N T+ G TPLH+A H+E V L+EK + + + K T
Sbjct: 92 HTNMVKLLLENNANPNL--ATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFT 148
Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
PL A G+ V L+ RD + +G LH
Sbjct: 149 PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHV 185
Score = 122 bits (309), Expect = 4e-30
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL N N N+ TP+H A +G E L LL E + KGF L+ A
Sbjct: 98 LLLENNANPNLATTAGHTPLHIAAREGHVETVLALLEK-EASQACMTKKGFTPLHVAAKY 156
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G ++V E +L + + +G TPLHVA +++++IV+LL+ + + ++
Sbjct: 157 GKVRVAELLLERDAHPNA--AGKNGLTPLHVAVHHNNLDIVKLLLPR-GGSPHSPAWNGY 213
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL A Q Q V L+ + + + + G LH
Sbjct: 214 TPLHIAAKQNQVEVARSLLQYGGSANAESVQGVTPLHL 251
Score = 117 bits (295), Expect = 3e-28
Identities = 43/158 (27%), Positives = 65/158 (41%), Gaps = 6/158 (3%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL + N N TP+H AV +I LLL + G+ L+ A +
Sbjct: 165 LLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSPHS--PAWNGYTPLHIAAKQ 222
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
++V +L + ++ G TPLH+A H E+V LL+ K + N N +
Sbjct: 223 NQVEVARSLLQYGGSANA--ESVQGVTPLHLAAQEGHAEMVALLLSK-QANGNLGNKSGL 279
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL +G V + L+ V +D G LH
Sbjct: 280 TPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHV 317
Score = 114 bits (288), Expect = 2e-27
Identities = 40/160 (25%), Positives = 69/160 (43%), Gaps = 9/160 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL N N+ + + TP+H +G + +L+ H V+ G+ L+ A
Sbjct: 264 LLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDA--TTRMGYTPLHVASHY 321
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
GN+K+ + +L ++ KT G++PLH A H +IV LL++ + N +
Sbjct: 322 GNIKLVKFLLQHQADVNA--KTKLGYSPLHQAAQQGHTDIVTLLLKN-GASPNEVSSDGT 378
Query: 244 TPLMAAVGQGQTSVINYLM--LRDVA-LDIQDIDGNGLLH 280
TPL A G SV + L + + + + D
Sbjct: 379 TPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPE 418
Score = 100 bits (252), Expect = 8e-23
Identities = 33/159 (20%), Positives = 55/159 (34%), Gaps = 39/159 (24%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
LL+ G + N + TP+H A +G E+ LLL NL
Sbjct: 230 SLLQYGGSANAESVQGVTPLHLAAQEGHAEMVALLLSKQANGNL---------------- 273
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G TPLH+ H+ + ++L++ V ++A
Sbjct: 274 ---------------------GNKSGLTPLHLVAQEGHVPVADVLIKH-GVMVDATTRMG 311
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL A G ++ +L+ ++ + G LH
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQ 350
Score = 94.5 bits (236), Expect = 1e-20
Identities = 32/154 (20%), Positives = 51/154 (33%), Gaps = 37/154 (24%)
Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
G + + TP+H A G I LL G +
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKNLLQR-----------GASP----------- 40
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
N TPLH+A H E+ + L++ K +NA +TPL
Sbjct: 41 --------NV------SNVKVETPLHMAARAGHTEVAKYLLQN-KAKVNAKAKDDQTPLH 85
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G T+++ L+ + ++ G+ LH
Sbjct: 86 CAARIGHTNMVKLLLENNANPNLATTAGHTPLHI 119
Score = 48.6 bits (117), Expect = 4e-06
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ ++ G + + LL RGA + +T LH AA + +
Sbjct: 15 LTPLHVASFMGHLPIVKNLLQRGASPNVSNVKVETPLHMAARAGHTEVAKY 65
Score = 46.3 bits (111), Expect = 2e-05
Identities = 15/51 (29%), Positives = 25/51 (49%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ + ++ + +LL RG + P G T LH AA N+ + +
Sbjct: 180 LTPLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARS 230
Score = 45.6 bits (109), Expect = 4e-05
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A +G E + +LL++ A + +G T LH A +
Sbjct: 246 VTPLHLAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADV 296
Score = 45.6 bits (109), Expect = 4e-05
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G V +LL R A G T LH A N D +++
Sbjct: 147 FTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKL 197
Score = 45.6 bits (109), Expect = 4e-05
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ ++ G ++ + LL A V G + LH AA D + +
Sbjct: 312 YTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTL 362
Score = 45.2 bits (108), Expect = 4e-05
Identities = 13/72 (18%), Positives = 20/72 (27%), Gaps = 2/72 (2%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
+ LH A QG + + +LL GA G T L A +
Sbjct: 345 YSPLHQAAQQGHTDIVTLLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETS 404
Query: 59 NRSRKHIYKERH 70
++
Sbjct: 405 FVLVSDKHRMSF 416
Score = 43.6 bits (104), Expect = 1e-04
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH A G + +LL A AG T LH AA + +
Sbjct: 81 QTPLHCAARIGHTNMVKLLLENNANPNLATTAGHTPLHIAAREGHVETVLA 131
Score = 43.6 bits (104), Expect = 2e-04
Identities = 18/51 (35%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LHI A +G VE + LL + A G T LH AA K ++
Sbjct: 114 HTPLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAEL 164
Score = 42.9 bits (102), Expect = 2e-04
Identities = 15/51 (29%), Positives = 21/51 (41%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A G E LL A V T LH AA + +++
Sbjct: 48 ETPLHMAARAGHTEVAKYLLQNKAKVNAKAKDDQTPLHCAARIGHTNMVKL 98
Score = 41.7 bits (99), Expect = 5e-04
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH++A +G V ++L+ G V G T LH A+ ++
Sbjct: 279 LTPLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKF 329
Score = 41.3 bits (98), Expect = 7e-04
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE--VNLYLENSKGFNILNYA 180
+LL+NG + N ++ TP+ A G+ + +L + + + + +
Sbjct: 362 LLLKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 32.1 bits (74), Expect = 0.64
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 22 RGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
G ++G T LH A+F ++
Sbjct: 3 PGISGGGGGESGLTPLHVASFMGHLPIVKN 32
Score = 30.2 bits (69), Expect = 2.4
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 3/43 (6%)
Query: 1 KTLLHILAYQG---CVEELNILLARGACVYYPDDAGDTALHYA 40
T L I G + L ++ + V D +
Sbjct: 378 TTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 117 bits (296), Expect = 1e-29
Identities = 46/265 (17%), Positives = 78/265 (29%), Gaps = 37/265 (13%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T LH+ A G + L A GA V + G TALH A + +
Sbjct: 46 QTALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQP--RPS 103
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
+ + D P+A S
Sbjct: 104 ---------------------------HPRDASDTYLTQSQDCTPDTSHAPAAVDSQPNP 136
Query: 120 KQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI 176
+ + + ++ + TP+H AV E+ LL ++N E + G
Sbjct: 137 ENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK-PEPTCGRTP 195
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
L+ AV V E +L + + G TPL A + + LL +
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSALLRPNPILARLLRA-HGAPEP 252
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYL 261
K +P ++ + +
Sbjct: 253 EDGGDKLSPCSSSGSDSDSDNRDEG 277
Score = 111 bits (279), Expect = 2e-27
Identities = 54/296 (18%), Positives = 89/296 (30%), Gaps = 56/296 (18%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYY---PDDAGDTALHYAAFGNKPDAIQI-NSHVS 56
T LH+ L+ LL A Y +D G TALH AA + ++ +
Sbjct: 10 DTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAILGEASTVEKLYAA-- 67
Query: 57 GANRSRKHIY---------KERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDML 107
GA + R T +Q + P+ +T + + D
Sbjct: 68 GAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDC---TPDTS 124
Query: 108 DTPSAECSGILIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
P+A S + + + ++ + TP+H AV E+ LL
Sbjct: 125 HAPAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA---- 180
Query: 166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
G ++ N G TPLH+A ++E
Sbjct: 181 -------GADL--------NKP--------EPT--------CGRTPLHLAVEAQAASVLE 209
Query: 226 LLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
LL++ + A RTPL +A+ + + L D
Sbjct: 210 LLLKA-GADPTARMYGGRTPLGSALLRPNPILARLLRAHGAPEPEDGGDKLSPCSS 264
Score = 83.0 bits (206), Expect = 9e-18
Identities = 31/216 (14%), Positives = 44/216 (20%), Gaps = 59/216 (27%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH----PEVNLYLENSKGFNILNYAVLRGNMK 187
+ DT +H AV E LL ++L
Sbjct: 2 FGYVTEDGDTALHLAVIHQHEPFLDFLLGFSAGHEYLDL--------------------- 40
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
+ G T LH+A VE L + + T L
Sbjct: 41 ----------------QNDLGQTALHLAAILGEASTVEKLYAA-GAGVLVAERGGHTALH 83
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLS 307
A + L+ + D + S
Sbjct: 84 LACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPDTSHAPAA-----------VDS 132
Query: 308 VGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
P NE L EN + PL
Sbjct: 133 QPNPENE------EEPRDEDWRLQLEAENYDGHTPL 162
Score = 74.9 bits (185), Expect = 5e-15
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 14/112 (12%)
Query: 124 VLLRNGCNVNIQDNNQ-DTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
+L G ++N + TP+H AV + LLL + G L A+
Sbjct: 176 LLRDAGADLNKPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTA--RMYGGRTPLGSAL 233
Query: 182 LRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
LR N + + A D +P + + + + E
Sbjct: 234 LRPNPILARLLRAHGAPEPE------DGGDKLSPCSSSGSDSDSDNRDEGDE 279
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 112 bits (283), Expect = 2e-28
Identities = 46/270 (17%), Positives = 85/270 (31%), Gaps = 57/270 (21%)
Query: 1 KTLLHILAYQGCVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
LH + ++ +L ++ + + D G LH++ + S
Sbjct: 3 NYPLHQACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK--ME 60
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIP-----RMNEDMLDTPSAE 113
N + + T P + + E
Sbjct: 61 NVNLDDYPDDSGWT---------------------------PFHIACSVG-------NLE 86
Query: 114 CSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSK 172
L + ++N N T +H AV K + E+ L+ + V + ++
Sbjct: 87 VVKSLYDRPL-----KPDLNKITNQGVTCLHLAVGKKWFEVSQFLIENGASVRI--KDKF 139
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKY 231
L+ A G++K+ E +L + V + G+TPL A H + LLVEKY
Sbjct: 140 NQIPLHRAASVGSLKLIE-LL-CGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKY 197
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYL 261
+ +D K A+ V +
Sbjct: 198 GAEYDLVDNKGAKAEDVAL---NEQVKKFF 224
Score = 107 bits (269), Expect = 2e-26
Identities = 45/164 (27%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 124 VLLRNGCNVNIQ---DNNQDTPMHDAVAKGFEEIQLLLLSHPE-VNLYLENSKGFNILNY 179
LL NVN+ D++ TP H A + G E+ L P +L ++G L+
Sbjct: 54 FLLSKMENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Query: 180 AVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
AV + +V++ L N A+V K PLH A ++++ELL K +N
Sbjct: 114 AVGKKWFEVSQ---FLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGKSAVNWQ 170
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
D + TPL A+ +G L+ + A D+ D G
Sbjct: 171 DKQGWTPLFHALAEGHGDAAVLLVEKYGAEYDLVDNKGAKAEDV 214
Score = 96.7 bits (242), Expect = 6e-23
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 34/158 (21%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L + +D + P+H +V+ EI LLS N+
Sbjct: 22 LHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-----------MENV-------- 62
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK-YKVNINALDLKKR 243
N+ G+TP H+AC ++E+V+ L ++ K ++N + +
Sbjct: 63 NLDDY--------------PDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGV 108
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
T L AVG+ V +L+ ++ I+D LH
Sbjct: 109 TCLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHR 146
Score = 74.8 bits (185), Expect = 3e-15
Identities = 28/111 (25%), Positives = 42/111 (37%), Gaps = 9/111 (8%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
L+ A + +++L + + K DG PLH + EI L+ K N+
Sbjct: 6 LHQACMENEFFKVQELLHSKP--SLLLQKDQDGRIPLHWSVSFQAHEITSFLLSK-MENV 62
Query: 236 NALDLKK---RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGL--LHF 281
N D TP A G V+ L R + D+ I G+ LH
Sbjct: 63 NLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLKPDLNKITNQGVTCLHL 113
Score = 60.5 bits (148), Expect = 2e-10
Identities = 20/78 (25%), Positives = 31/78 (39%), Gaps = 5/78 (6%)
Query: 208 GFTPLHVACFNDHI-EIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLR-- 264
PLH AC + ++ ELL K + D R PL +V + ++L+ +
Sbjct: 2 SNYPLHQACMENEFFKVQELLHSK-PSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKME 60
Query: 265 DV-ALDIQDIDGNGLLHF 281
+V D D G H
Sbjct: 61 NVNLDDYPDDSGWTPFHI 78
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 111 bits (280), Expect = 3e-28
Identities = 39/167 (23%), Positives = 67/167 (40%), Gaps = 15/167 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L V+ D +TP++ AV EI L+ ++NL +NS + YA
Sbjct: 24 ILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALIDRGADINL--QNSISDSPYLYAGA 81
Query: 183 RGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
+G ++ +L + N G L A HI+ V+LL+E + +I+ +
Sbjct: 82 QGRTEILAYMLKHATPDLNK----HNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQN 137
Query: 240 LKKRTPLMAAV-----GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
T L+ AV Q ++ LM I+D G + +
Sbjct: 138 DFGYTALIEAVGLREGNQLYQDIVKLLMENGADQSIKDNSGRTAMDY 184
Score = 102 bits (257), Expect = 3e-25
Identities = 39/144 (27%), Positives = 65/144 (45%), Gaps = 9/144 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L+ G ++N+Q++ D+P A A+G EI +L H +L N G N L A +
Sbjct: 57 ALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEK 116
Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACF-----NDHIEIVELLVEKYKVNINA 237
G++ K+L L + + G+T L A + +IV+LL+E + +
Sbjct: 117 GHIDNV-KLL-LEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLMEN-GADQSI 173
Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
D RT + A +G T + L
Sbjct: 174 KDNSGRTAMDYANQKGYTEISKIL 197
Score = 92.1 bits (230), Expect = 1e-21
Identities = 22/153 (14%), Positives = 58/153 (37%), Gaps = 12/153 (7%)
Query: 134 IQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKIL 193
++ + A + ++++ +L + +++G LN AV ++++ + ++
Sbjct: 1 MKTYEVGALLEAANQRDTKKVKEILQDT-TYQVDEVDTEGNTPLNIAVHNNDIEIAKALI 59
Query: 194 A----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
+N + S +P A EI+ +++ ++N + L+ A
Sbjct: 60 DRGADINL------QNSISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPA 113
Query: 250 VGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
+G + L+ +D Q+ G L
Sbjct: 114 AEKGHIDNVKLLLEDGREDIDFQNDFGYTALIE 146
Score = 72.5 bits (179), Expect = 8e-15
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 20/117 (17%)
Query: 125 LLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L++ ++N + + A KG + LLL ++ +N G+ L AV
Sbjct: 91 MLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGL 150
Query: 184 GNMKVTEKILALNRNLATV-----------PKTSDGFTPLHVACFNDHIEIVELLVE 229
V K + G T + A + EI ++L +
Sbjct: 151 REGN--------QLYQDIVKLLMENGADQSIKDNSGRTAMDYANQKGYTEISKILAQ 199
Score = 52.8 bits (128), Expect = 4e-08
Identities = 28/163 (17%), Positives = 54/163 (33%), Gaps = 37/163 (22%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
+ QG E L +L + + G AL AA D +++
Sbjct: 73 DSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLED-GRE 131
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
+ ++ + T ++ + N+ D + +L
Sbjct: 132 DIDFQNDFG----------------------YTALIEAVGLREGNQLYQDI--VK---LL 164
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
++ NG + +I+DN+ T M A KG+ EI +L +
Sbjct: 165 ME-------NGADQSIKDNSGRTAMDYANQKGYTEISKILAQY 200
Score = 44.7 bits (107), Expect = 2e-05
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 5/61 (8%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
LL + + IL V D G+T L+ A N + + I GA
Sbjct: 7 GALLEAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHNNDIEIAKALI-DR--GA 63
Query: 59 N 59
+
Sbjct: 64 D 64
Score = 40.9 bits (97), Expect = 4e-04
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
T L+I + +E L+ RGA + + D+ YA
Sbjct: 40 NTPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQG 83
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 114 bits (288), Expect = 8e-28
Identities = 51/365 (13%), Positives = 114/365 (31%), Gaps = 76/365 (20%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
T LH+ GCV+ L + G G +H A NK D + +
Sbjct: 54 CTALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALVEG---AK 108
Query: 59 NRSRK--HIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSG 116
R + + E E + S++ + +T + + + + L+ +
Sbjct: 109 ERGQMPESLLNECDER---EVNEIGSHVKHCKGQTALH---WCVGLGPEYLEM--IKI-- 158
Query: 117 ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE----VNLYLENSK 172
L++ G + +D +TP+ A+ E L++ + L N +
Sbjct: 159 --------LVQLGASPTAKDKADETPLMRAMEFRNREALDLMMDTVPSKSSLRLDYANKQ 210
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK-- 230
G + L++A+L V + + + ++ + ++ PL+++ + + + L++K
Sbjct: 211 GNSHLHWAILINWEDVAMRFVEMGIDVNM--EDNEHTVPLYLSVRAAMVLLTKELLQKTD 268
Query: 231 ----------YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+ + + AA + V+ L + + G G
Sbjct: 269 VFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAV 328
Query: 281 FLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQ 340
K AV + AP+ + +R
Sbjct: 329 KRKKKAA-------------------------------PAVKRMKLAPSAPVRTRSRSRA 357
Query: 341 KPLDL 345
+ +
Sbjct: 358 RSSAV 362
Score = 98.4 bits (246), Expect = 2e-22
Identities = 30/176 (17%), Positives = 53/176 (30%), Gaps = 29/176 (16%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMK 187
N D+ +H A KG + L+ + +N G L+ A G +
Sbjct: 10 KLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACKFGCVD 67
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK----------------- 230
+ L + G P+H+A + ++V LVE
Sbjct: 68 TAK-YL-ASVG-EVH-SLWHGQKPIHLAVMANKTDLVVALVEGAKERGQMPESLLNECDE 123
Query: 231 ---YKVNINALDLKKRTPLMAAV--GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ + K +T L V G +I L+ + +D L
Sbjct: 124 REVNEIGSHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMR 179
Score = 75.3 bits (186), Expect = 9e-15
Identities = 20/99 (20%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G+M K+ NR + +HVA + V L+E V+ +
Sbjct: 2 PGSMTDFPKL---NRIK----SDDENMEKIHVAARKGQTDEVRRLIET-GVSPTIQNRFG 53
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
T L A G YL G +H
Sbjct: 54 CTALHLACKFGCVDTAKYLASVGE--VHSLWHGQKPIHL 90
Score = 73.7 bits (182), Expect = 3e-14
Identities = 17/124 (13%), Positives = 42/124 (33%), Gaps = 11/124 (8%)
Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACF 217
+ P++N + + ++ A +G +++ + + G T LH+AC
Sbjct: 5 MTDFPKLNRIKSDDENMEKIHVAARKGQTDEVRRLIETGVSPTI--QNRFGCTALHLACK 62
Query: 218 NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
++ + L + + P+ AV +T ++ L ++ G
Sbjct: 63 FGCVDTAKYLASV-GEVHSLWH--GQKPIHLAVMANKTDLVVAL------VEGAKERGQM 113
Query: 278 LLHF 281
Sbjct: 114 PESL 117
Score = 65.7 bits (161), Expect = 1e-11
Identities = 14/181 (7%), Positives = 36/181 (19%), Gaps = 30/181 (16%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ LH + + G V D+ L+ + +
Sbjct: 212 NSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYLSVRAAMVLLTKELLQK--TDV 269
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
+ TV +V + + ++
Sbjct: 270 FLIQACPYHNGTTV---------LPDRVVWLDF--------------VPAAADPSKQEVL 306
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
+ +L V N K ++ + L+ + +
Sbjct: 307 Q---LLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP-SAPVRTRSRSRARSSAV 362
Query: 180 A 180
+
Sbjct: 363 S 363
Score = 52.9 bits (128), Expect = 2e-07
Identities = 15/89 (16%), Positives = 25/89 (28%), Gaps = 5/89 (5%)
Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNM 186
NG V + A +E+ LL EV + G +
Sbjct: 279 NGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEKLDEVVR--SLNTGAGGAVKRKKKAAP 336
Query: 187 KVTEKILALNRNLATVPKTSDGFTPLHVA 215
V LA + + T ++ V+
Sbjct: 337 AVKRMKLAPSAPVRT--RSRSRARSSAVS 363
Score = 46.4 bits (111), Expect = 2e-05
Identities = 17/65 (26%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+H+ A +G +E+ L+ G + G TALH A D + S G
Sbjct: 21 MEKIHVAARKGQTDEVRRLIETGVSPTIQNRFGCTALHLACKFGCVDTAKYLASV--GEV 78
Query: 60 RSRKH 64
S H
Sbjct: 79 HSLWH 83
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 111 bits (280), Expect = 1e-27
Identities = 45/223 (20%), Positives = 80/223 (35%), Gaps = 41/223 (18%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+LL++G VN + TP+ +A G + LLL H V S + ++ A
Sbjct: 54 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAAR 110
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
RG+++ ++A N+ K S TPL++AC N V+ L+E ++N +
Sbjct: 111 RGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQ 166
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIY 302
+PL A + LM ++ +G K P
Sbjct: 167 DSPLHAVARTASEELACLLMDFGADTQAKNAEG--------------KRP---------- 202
Query: 303 EEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
+ + P + + ++ P SL R +
Sbjct: 203 ---VELVPPESP------LAQLFLEREGPPSLMQLCRLRIRKC 236
Score = 102 bits (256), Expect = 2e-24
Identities = 44/290 (15%), Positives = 76/290 (26%), Gaps = 99/290 (34%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ LH G + + ILL GA V T L A D + + H GA+
Sbjct: 37 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQH--GAS 94
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
VQ S+ L +P
Sbjct: 95 ------------------VQPESD-----------------------LASPIHEAARRGH 113
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
EC LI G N++ + ++ TP++ A LL
Sbjct: 114 VECVNSLIAY-------GGNIDHKISHLGTPLYLACENQQRACVKKLLES---------- 156
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY 231
G A V + +PLH E+ LL++
Sbjct: 157 -G--------------------------ADVNQGKGQDSPLHAVARTASEELACLLMDF- 188
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+ A + + + P+ + + + R+ + + +
Sbjct: 189 GADTQAKNAEGKRPVELVPPESP--LAQLFLEREGPPSLMQLCRLRIRKC 236
Score = 92.5 bits (231), Expect = 4e-21
Identities = 31/157 (19%), Positives = 54/157 (34%), Gaps = 38/157 (24%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L+ G VNI + +P+H+A G +LL H G +
Sbjct: 22 LISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKH-----------GAQV-------- 62
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
N T+D TPL AC + + V LL++ ++ + +
Sbjct: 63 -----------NG------VTADWHTPLFNACVSGSWDCVNLLLQH-GASVQP-ESDLAS 103
Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
P+ A +G +N L+ +D + L+
Sbjct: 104 PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYL 140
Score = 90.6 bits (226), Expect = 2e-20
Identities = 18/139 (12%), Positives = 49/139 (35%), Gaps = 9/139 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
L+ G N++ + ++ TP++ A LL +VN + + L+
Sbjct: 119 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVAR 175
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
+ ++ ++ + K ++G P+ + + +L +E + + + L +
Sbjct: 176 TASEELACLLMDFGADTQA--KNAEGKRPVELVPPESPL--AQLFLE-REGPPSLMQLCR 230
Query: 243 RTPLMAAVGQGQTSVINYL 261
Q + +
Sbjct: 231 LRIRKCFGIQQHHKITKLV 249
Score = 85.2 bits (212), Expect = 1e-18
Identities = 38/242 (15%), Positives = 72/242 (29%), Gaps = 71/242 (29%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T L G + +N+LL GA V P+ + +H AA + + ++ G N
Sbjct: 70 HTPLFNACVSGSWDCVNLLLQHGASVQ-PESDLASPIHEAARRGHVECVNSLIAY--GGN 126
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
++ K + TP
Sbjct: 127 ----------------------------------IDHK-----ISHL-GTPLYLACENQQ 146
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
C L++ +G +VN Q QD+P+H EE+ LL+ + +N+
Sbjct: 147 RACVKKLLE-------SGADVN-QGKGQDSPLHAVARTASEELACLLMDF-GADTQAKNA 197
Query: 172 KGFNILNYAVLRGNMKVTEKILAL---NRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
+G + ++ +L H +I +L++
Sbjct: 198 EGKRPVELVPPESP---LAQLFLEREGPPSL----MQLCRLRIRKCFGIQQHHKITKLVL 250
Query: 229 EK 230
+
Sbjct: 251 PE 252
Score = 74.8 bits (185), Expect = 4e-15
Identities = 27/121 (22%), Positives = 44/121 (36%), Gaps = 37/121 (30%)
Query: 141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
+PMH+A G + L+S G+ + N+
Sbjct: 5 SPMHEAAIHGHQLSLRNLISQ-----------GWAV--------NI-------------- 31
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
T+D +PLH AC H+ V++L++ +N + TPL A G +N
Sbjct: 32 ---ITADHVSPLHEACLGGHLSCVKILLKH-GAQVNGVTADWHTPLFNACVSGSWDCVNL 87
Query: 261 L 261
L
Sbjct: 88 L 88
Score = 70.2 bits (173), Expect = 1e-13
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
++P+H A + H + L+ + +N + +PL A G S + L+
Sbjct: 2 SDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADHVSPLHEACLGGHLSCVKILLKHGA 60
Query: 267 ALDIQDIDGNGLLHF 281
++ D + L
Sbjct: 61 QVNGVTADWHTPLFN 75
Score = 40.5 bits (96), Expect = 0.001
Identities = 5/66 (7%), Positives = 15/66 (22%), Gaps = 5/66 (7%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
K + ++ + + +L L R ++
Sbjct: 200 KRPVELVPPESPLAQL--FLEREGPPSLMQLCRLRIRKCFGIQQHHKITKLVLPE--DLK 255
Query: 60 RSRKHI 65
+ H+
Sbjct: 256 QFLLHL 261
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 109 bits (275), Expect = 2e-27
Identities = 34/158 (21%), Positives = 60/158 (37%), Gaps = 10/158 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L ++ + DT +KG + P + + N L+ A RG
Sbjct: 31 LYIEEGDIIYITDMSDTNWWKGTSKGRTGL------IPSNYVAEQAESIDNPLHEAAKRG 84
Query: 185 NMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N+ + L N V G T L+ AC H +IVE+L + + +N +
Sbjct: 85 NLSWLRECLD---NRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIELNQQNKLGD 141
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
T L AA +G ++ L+ + D+++I+
Sbjct: 142 TALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDM 179
Score = 108 bits (271), Expect = 6e-27
Identities = 33/284 (11%), Positives = 66/284 (23%), Gaps = 97/284 (34%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
+ + Y + L + Y D DT + +
Sbjct: 13 QVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTG------LIPSNYV 66
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------SA 112
+ + D P +
Sbjct: 67 AEQAESI----------------------------------------DNPLHEAAKRGNL 86
Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSK 172
+ VN D T ++ A G ++I +L + P + L
Sbjct: 87 SWLRECLDN-------RVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPNIEL------ 133
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
N + G T LH A + + +IV+LL+ K
Sbjct: 134 --NQ---------------------------QNKLGDTALHAAAWKGYADIVQLLLAK-G 163
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
+ +++K+ A S++ D + + +
Sbjct: 164 ARTDLRNIEKKLAFDMATNAACASLLKKKQGTDAVRTLSNAEDY 207
Score = 91.9 bits (229), Expect = 3e-21
Identities = 22/150 (14%), Positives = 42/150 (28%), Gaps = 10/150 (6%)
Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
+ A+ L E ++ +G +
Sbjct: 6 PKPVKPGQVKVFRALYTFEPRTPDELYIE-EGDIIYITDMSDTNWWKGTSKGRTGLIPSN 64
Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
+ PLH A ++ + ++ +V +N LD T L A
Sbjct: 65 YVAEQA-------ESIDNPLHEAAKRGNLSWLRECLDN-RVGVNGLDKAGSTALYWACHG 116
Query: 253 GQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
G ++ L + L+ Q+ G+ LH
Sbjct: 117 GHKDIVEMLFTQPNIELNQQNKLGDTALHA 146
Score = 64.2 bits (157), Expect = 9e-12
Identities = 17/97 (17%), Positives = 34/97 (35%), Gaps = 5/97 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
+ +N Q+ DT +H A KG+ +I LLL+ +L N + + A
Sbjct: 126 FTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAKGARTDL--RNIEKKLAFDMATNA 183
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
+ +K + ++ + + H
Sbjct: 184 ACASLLKKKQGTDAVRTL--SNAEDYLDDEDSDLEHH 218
Score = 47.2 bits (113), Expect = 4e-06
Identities = 22/152 (14%), Positives = 42/152 (27%), Gaps = 43/152 (28%)
Query: 1 KTLLHILAYQGCVEELNILLA-RGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
T L+ + G + + +L + + GDTALH AA+ D +Q+ + GA
Sbjct: 107 STALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK--GA 164
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
++I K + D + L
Sbjct: 165 RTDLRNIEK----------------------KLA--------------FDMATNAACASL 188
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG 150
+K + + D+ +
Sbjct: 189 LK---KKQGTDAVRTLSNAEDYLDDEDSDLEH 217
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 111 bits (281), Expect = 6e-27
Identities = 30/168 (17%), Positives = 65/168 (38%), Gaps = 11/168 (6%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEV--NLYLENSKGFNILNYAVL 182
L++ G + I + ++ + +H A A + + +L+ ++ ++ + G L
Sbjct: 185 LMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAH 244
Query: 183 RGNMKVTEKILAL-----NRNLATVP----KTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
L + + G T LH A ++ IV+ LV +
Sbjct: 245 NEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGS 304
Query: 234 NINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
N + D +TP+M A +G+ V+ YL+ + +++ D +
Sbjct: 305 NKDKQDEDGKTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQL 352
Score = 102 bits (256), Expect = 1e-23
Identities = 21/168 (12%), Positives = 49/168 (29%), Gaps = 15/168 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
N + +H A G I + + + +L++
Sbjct: 79 FNHTNLQIPTEPEPESPIKLHTE-AAGSYAITEPITRESVNII---DPRHNRTVLHWIAS 134
Query: 183 RGNMKVTEKILALNRNLATVP------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
+ + +E ++ D TPL +A +V L++ +
Sbjct: 135 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-GADPT 193
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVA---LDIQDIDGNGLLHF 281
+ +R+ L A ++ Y++ ++ D +G L
Sbjct: 194 IYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMI 241
Score = 98.5 bits (246), Expect = 2e-22
Identities = 41/299 (13%), Positives = 69/299 (23%), Gaps = 93/299 (31%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
G + P+ LH A G+ I N
Sbjct: 62 LYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSYAITEPITRE--SVN- 118
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETP-----MLNMKFIPRMNEDMLDTPSAECS 115
I RH T + + + + +
Sbjct: 119 ----IIDPRHN------------------RTVLHWIASNS-------SAEKSEDLIVHEA 149
Query: 116 GILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFN 175
I G +VN D +++TP+ AV + L+ G +
Sbjct: 150 KECIAA-------GADVNAMDCDENTPLMLAVLARRRRLVAYLMKA-----------GAD 191
Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKV-- 233
+ LH A N ++ ++ K+
Sbjct: 192 P-------------------TI------YNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 234 NINALDLKKRTPLMAAV---GQGQTSVINYLM--------LRDVALDIQDIDGNGLLHF 281
+I LD T LM G+ Q + L+ D + G LH+
Sbjct: 227 DIEELDRNGMTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHY 285
Score = 93.9 bits (234), Expect = 7e-21
Identities = 32/160 (20%), Positives = 52/160 (32%), Gaps = 12/160 (7%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
N + P G + + ++ + L+ G+ +
Sbjct: 51 KRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTN-LQIPTEPEPESPIKLHTEA-AGSYAI 108
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE---KYKV----NINALDLK 241
TE I R + T LH N E E L+ K + ++NA+D
Sbjct: 109 TEPIT---RESVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKECIAAGADVNAMDCD 165
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+ TPLM AV + ++ YLM I + LH
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQ 205
Score = 90.8 bits (226), Expect = 7e-20
Identities = 40/272 (14%), Positives = 76/272 (27%), Gaps = 82/272 (30%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
T L + + L+ GA + + +ALH AA + +NS
Sbjct: 167 NTPLMLAVLARRRRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKG 226
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
+ T + M D + + A+ +L
Sbjct: 227 DIEELDRNG----------------------MTAL--MIVAHNEGRDQVAS--AK---LL 257
Query: 119 IKQDFVLLRNGCNVNI--------QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
+++ G V+ + T +H A I L+
Sbjct: 258 VEK-------GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGE--------- 301
Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
KG N + + DG TP+ +A IE+V L+++
Sbjct: 302 -KGSNK--------DK-----------------QDEDGKTPIMLAAQEGRIEVVMYLIQQ 335
Query: 231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
++ A+D T A ++++
Sbjct: 336 -GASVEAVDATDHTARQLAQANNHHNIVDIFD 366
Score = 76.5 bits (189), Expect = 4e-15
Identities = 19/116 (16%), Positives = 37/116 (31%), Gaps = 14/116 (12%)
Query: 125 LLRNGCNVNI--------QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI 176
L+ G V+ + T +H A I L+ N ++ G
Sbjct: 257 LVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTP 316
Query: 177 LNYAVLRGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
+ A G ++V ++ + + T +A N+H IV++
Sbjct: 317 IMLAAQEGRIEVVMYLIQQGASVEA----VDATDHTARQLAQANNHHNIVDIFDRC 368
Score = 56.9 bits (138), Expect = 8e-09
Identities = 14/115 (12%), Positives = 28/115 (24%), Gaps = 16/115 (13%)
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
+ + L A G +K RN P N + + +
Sbjct: 32 QSITSSQHSLLEASYDGYIKR-------QRNE----LQHYSLYPNPQGYGNGNDFLGDFN 80
Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI-QDIDGNGLLHF 281
+ + L G ++ + V +I +LH+
Sbjct: 81 HTN-LQIPTEPEPESPIKLHTEA-AGSYAITEPITRESV--NIIDPRHNRTVLHW 131
Score = 48.4 bits (116), Expect = 4e-06
Identities = 34/181 (18%), Positives = 51/181 (28%), Gaps = 68/181 (37%)
Query: 1 KTLLHILAYQGCVEELNI---LLARGACVYYP--------DDAGDTALHYAAFGNKPDAI 49
T L I+A+ +++ L+ +GA V Y G TALHYAA + +
Sbjct: 236 MTALMIVAHNEGRDQVASAKLLVEKGAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPIV 295
Query: 50 QI-NSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLD 108
+ G+N + + +ED
Sbjct: 296 KYLVGEK-GSN----------------------------------KDKQ-----DEDG-K 314
Query: 109 TP--------SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS 160
TP E LI+Q G +V D T A A I +
Sbjct: 315 TPIMLAAQEGRIEVVMYLIQQ-------GASVEAVDATDHTARQLAQANNHHNIVDIFDR 367
Query: 161 H 161
Sbjct: 368 C 368
Score = 42.6 bits (101), Expect = 3e-04
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
KT + + A +G +E + L+ +GA V D TA A N + + I +
Sbjct: 314 KTPIMLAAQEGRIEVVMYLIQQGASVEAVDATDHTARQLAQANNHHNIVDIFDRC--RPE 371
Query: 60 R 60
R
Sbjct: 372 R 372
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 111 bits (280), Expect = 7e-27
Identities = 48/250 (19%), Positives = 93/250 (37%), Gaps = 39/250 (15%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L + + + +A G E++ LL VN + + + L+ A
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL-NVNCHASDGRKSTPLHLAAGY 68
Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
+++ + +L + A V K G PLH AC H E+ ELL++ +NA+DL +
Sbjct: 69 NRVRIVQLLLQ---HGADVHAKDKGGLVPLHNACSYGHYEVTELLLKH-GACVNAMDLWQ 124
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF-----------LFIKKNFYKT 291
TPL A + + V + L+ + + G + K + +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGH---S 181
Query: 292 PI--TREKSVPIYEEYLSVGGP----------------SNEHGILLAVFLFLVKHGAPLS 333
+ RE + ++ L++ ++ H V L++ GA ++
Sbjct: 182 LLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVN 241
Query: 334 LENNNRQKPL 343
+N + PL
Sbjct: 242 EKNKDFMTPL 251
Score = 104 bits (262), Expect = 2e-24
Identities = 35/182 (19%), Positives = 61/182 (33%), Gaps = 30/182 (16%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKG----------------------FEEIQLLLLSHP 162
LL +G + + + + + + A +++ L
Sbjct: 143 LLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKGHSLLQAAREADLAKVKKTLALEI 202
Query: 163 EVNLYLENSKGFNILNYAVLRGNMKVTE--KILALNRNLATV-PKTSDGFTPLHVACFND 219
+ L+ AV + K + ++L L + A V K D TPLHVA
Sbjct: 203 INFK--QPQSHETALHCAVASLHPKRKQVAELL-LRKG-ANVNEKNKDFMTPLHVAAERA 258
Query: 220 HIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
H +++E+L + +NALD +T L A G L+ I + G
Sbjct: 259 HNDVMEVLHKH-GAKMNALDSLGQTALHRAALAGHLQTCRLLLSYGSDPSIISLQGFTAA 317
Query: 280 HF 281
Sbjct: 318 QM 319
Score = 103 bits (260), Expect = 2e-24
Identities = 48/280 (17%), Positives = 86/280 (30%), Gaps = 68/280 (24%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
T LH A + VE ++LL+ GA + G +A+ A + +
Sbjct: 125 FTPLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFK----GH 180
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGIL 118
S +E + L ++ I +T A S
Sbjct: 181 SLLQAAREADLAKVKK----------------TLALEIINFKQPQSHETALHCAVASLHP 224
Query: 119 IKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFN 175
++ LLR G NVN ++ + TP+H A + ++ +L H ++N
Sbjct: 225 KRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHNDVMEVLHKHGAKMNA--------- 275
Query: 176 ILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
S G T LH A H++ LL+ Y +
Sbjct: 276 ----------------------------LDSLGQTALHRAALAGHLQTCRLLLS-YGSDP 306
Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
+ + L+ T + ++ + D+D
Sbjct: 307 SIISLQGFTAAQMG-----NEAVQQILSESTPMRTSDVDY 341
Score = 99.5 bits (249), Expect = 7e-23
Identities = 58/294 (19%), Positives = 94/294 (31%), Gaps = 78/294 (26%)
Query: 1 KTLLHILAYQGCVEEL-NILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
K L A G E+L +L + D T LH AA N+ +Q+ H GA
Sbjct: 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQH--GA 82
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
+ ++ K ++ L P
Sbjct: 83 D----------------------------------VHAK-----DKGGL-VPLHNACSYG 102
Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
E + +L+K G VN D Q TP+H+A +K E+ LLLSH + L N
Sbjct: 103 HYEVTELLLKH-------GACVNAMDLWQFTPLHEAASKNRVEVCSLLLSH-GADPTLVN 154
Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G + ++ A + G + L A D ++ + L
Sbjct: 155 CHGKSAVDMAPTPELRERLTYEF-------------KGHSLLQAAREADLAKVKKTLAL- 200
Query: 231 YKVNINALDLKKRTPLMAAVGQG---QTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ T L AV + V L+ + ++ ++ D LH
Sbjct: 201 -EIINFKQPQSHETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHV 253
Score = 30.2 bits (69), Expect = 2.1
Identities = 8/43 (18%), Positives = 12/43 (27%), Gaps = 4/43 (9%)
Query: 19 LLARGACVYYPDDAGDTALHYAA-FGNKPDAIQI-NSHVSGAN 59
L A + L AA GN+ + + N
Sbjct: 10 LADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLTPL--NVN 50
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 108 bits (272), Expect = 2e-26
Identities = 42/166 (25%), Positives = 72/166 (43%), Gaps = 20/166 (12%)
Query: 124 VLLRNGCNVNIQDNNQD----------TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKG 173
L + G NVN++ ++ T + DA KG E+ +LL ++ ++ G
Sbjct: 123 FLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMG 182
Query: 174 FNILNYAVLRGNMKVTEKILAL------NRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
N L +A+L + E I L + N+ + G TPL +A H+ +V+ L
Sbjct: 183 RNALIHALLSSDDSDVEAITHLLLDHGADVNV----RGERGKTPLILAVEKKHLGLVQRL 238
Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
+E+ + IN D +T L+ AV + L R + D D+
Sbjct: 239 LEQEHIEINDTDSDGKTALLLAVELKLKKIAELLCKRGASTDCGDL 284
Score = 90.6 bits (226), Expect = 3e-20
Identities = 33/153 (21%), Positives = 57/153 (37%), Gaps = 38/153 (24%)
Query: 125 LLRNGCNVNIQDNN-QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL G NVN Q+ TP+H+AV E+I LLL H G +
Sbjct: 24 LLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRH-----------GADP------- 65
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+ + +G TP +A +++++L + K ++N D
Sbjct: 66 -VL-----------------RKKNGATPFLLAAIAGSVKLLKLFLSK-GADVNECDFYGF 106
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
T M A G+ + +L R ++++
Sbjct: 107 TAFMEAAVYGKVKALKFLYKRGANVNLRRKTKE 139
Score = 87.9 bits (219), Expect = 2e-19
Identities = 33/168 (19%), Positives = 53/168 (31%), Gaps = 46/168 (27%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LLR+G + ++ N TP A G ++ L LS G ++
Sbjct: 57 LLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK-----------GADV------- 98
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE---------KYKVN 234
N GFT A ++ ++ L + K K +
Sbjct: 99 ------------NE------CDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKED 140
Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVA-LDIQDIDGNGLLHF 281
L T LM A +G V+ L+ A ++ D G L
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIH 188
Score = 82.5 bits (205), Expect = 2e-17
Identities = 45/257 (17%), Positives = 69/257 (26%), Gaps = 95/257 (36%)
Query: 1 KTLLHILAYQGCVEELNILLARGA----------CVYYPDDAGDTALHYAAFGNKPDAIQ 50
T A G V+ L L RGA G TAL AA + ++
Sbjct: 106 FTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLK 165
Query: 51 --INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLD 108
+ + GA+ +N +
Sbjct: 166 ILL-DEM-GAD----------------------------------VNAC-----DNMG-R 183
Query: 109 TP---SAECSGILIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPE 163
+ S + LL +G +VN++ TP+ AV K + LL
Sbjct: 184 NALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ-- 241
Query: 164 VNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEI 223
+ I N SDG T L +A +I
Sbjct: 242 --------EHIEI--------ND-----------------TDSDGKTALLLAVELKLKKI 268
Query: 224 VELLVEKYKVNINALDL 240
ELL ++ + + DL
Sbjct: 269 AELLCKR-GASTDCGDL 284
Score = 43.2 bits (103), Expect = 1e-04
Identities = 14/60 (23%), Positives = 21/60 (35%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH + + +LL GA G T AA +++ S GA+
Sbjct: 40 WTPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFLSK--GAD 97
Score = 39.8 bits (94), Expect = 0.002
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPD-DAGDTALHYAAFGNKPDAIQI 51
LL V+ + LL GA V + + + G T LH A ++ D +++
Sbjct: 6 NHLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVEL 57
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 106 bits (268), Expect = 3e-26
Identities = 33/165 (20%), Positives = 65/165 (39%), Gaps = 11/165 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-----PEVNLYLENSKGFNILN 178
LL GC+ ++D +TP+H A +G +L L N G L+
Sbjct: 63 ALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLH 122
Query: 179 YAVLRGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
A + G + + E +++L + N +G T LH+A + ++V LL++ ++N
Sbjct: 123 LASIHGYLGIVELLVSLGADVNAQE---PCNGRTALHLAVDLQNPDLVSLLLKC-GADVN 178
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+ + +P G+ T + L + + +
Sbjct: 179 RVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESY 223
Score = 92.2 bits (230), Expect = 3e-21
Identities = 44/266 (16%), Positives = 76/266 (28%), Gaps = 94/266 (35%)
Query: 30 DDAGDTALHYAAF-GNKPDAIQIN----SHVSGANRSRKHIYKERHRTVTTEKVQRPSNL 84
+ GD+ LH A K +++ A
Sbjct: 5 TEDGDSFLHLAIIHEEKALTMEVIRQVKGD--LAF------------------------- 37
Query: 85 PKVEPETPMLNMKFIPRMNEDMLDTP--------SAECSGILIKQDFVLLRNGCNVNIQD 136
LN + N TP E + L+ GC+ ++D
Sbjct: 38 ---------LNFQ-----NNLQQ-TPLHLAVITNQPEIAEALLG-------AGCDPELRD 75
Query: 137 NNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
+TP+H A +G +L +++L
Sbjct: 76 FRGNTPLHLACEQGCLASVGVLTQS-----------CTTPHLHSIL--KA---------- 112
Query: 197 RNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-RTPLMAAVGQGQT 255
+G T LH+A + ++ IVELLV ++NA + RT L AV
Sbjct: 113 -------TNYNGHTCLHLASIHGYLGIVELLVSL-GADVNAQEPCNGRTALHLAVDLQNP 164
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
+++ L+ ++ G
Sbjct: 165 DLVSLLLKCGADVNRVTYQGYSPYQL 190
Score = 80.3 bits (199), Expect = 3e-17
Identities = 37/260 (14%), Positives = 62/260 (23%), Gaps = 90/260 (34%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T LH+ E LL G D G+T LH A ++ +
Sbjct: 46 QTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQS--CTT 103
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
+L N + T
Sbjct: 104 PHLH----------------------------SILKAT-----NYNGH-TCLHLASIHGY 129
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
+L+ G +VN Q+ N T +H AV ++ LLL
Sbjct: 130 LGIVELLVS-------LGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKC--------- 173
Query: 171 SKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G ++ NR T G++P + I + L +
Sbjct: 174 --GADV-------------------NR------VTYQGYSPYQLTWGRPSTRIQQQLGQ- 205
Query: 231 YKVNINALDLKKRTPLMAAV 250
+ + +
Sbjct: 206 LTLENLQMLPESEDEESYDT 225
Score = 70.7 bits (174), Expect = 7e-14
Identities = 25/157 (15%), Positives = 46/157 (29%), Gaps = 47/157 (29%)
Query: 135 QDNNQDTPMHDAVAKGFEEIQL----LLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
+ D+ +H A+ + + + + + N
Sbjct: 4 LTEDGDSFLHLAIIHEEKALTMEVIRQVKGD-----------LAFL--------NF---- 40
Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
+ + TPLH+A + EI E L+ + D + TPL A
Sbjct: 41 -------------QNNLQQTPLHLAVITNQPEIAEALLGA-GCDPELRDFRGNTPLHLAC 86
Query: 251 GQGQTSVINYL------MLRDVALDIQDIDGNGLLHF 281
QG + + L L + +G+ LH
Sbjct: 87 EQGCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHL 123
Score = 59.5 bits (145), Expect = 4e-10
Identities = 20/104 (19%), Positives = 41/104 (39%), Gaps = 6/104 (5%)
Query: 124 VLLRNGCNVNIQDN-NQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
+L+ G +VN Q+ N T +H AV ++ LLL +VN +G++
Sbjct: 135 LLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLLKCGADVNR--VTYQGYSPYQLTW 192
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
R + ++ +++ L + + ++ E E
Sbjct: 193 GRPSTRIQQQLGQLTLE--NLQMLPESEDEESYDTESEFTEFTE 234
Score = 51.0 bits (123), Expect = 3e-07
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYAVLR 183
LL+ G +VN +P + IQ L E L S+ + +Y
Sbjct: 170 LLKCGADVNRVTYQGYSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESE--DEESYDTES 227
Query: 184 GNMKVTEK 191
+ TE
Sbjct: 228 EFTEFTED 235
Score = 36.8 bits (86), Expect = 0.014
Identities = 2/47 (4%), Positives = 7/47 (14%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPD 47
+ + + L + Y +
Sbjct: 185 YSPYQLTWGRPSTRIQQQLGQLTLENLQMLPESEDEESYDTESEFTE 231
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 107 bits (271), Expect = 3e-26
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 8/159 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+LL++G VN + TP+ +A G + LLL H V S + ++ A
Sbjct: 110 ILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLLQHGASVQ---PESDLASPIHEAAR 166
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
RG+++ ++A N+ K S TPL++AC N V+ L+E ++N +
Sbjct: 167 RGHVECVNSLIAYGGNIDH--KISHLGTPLYLACENQQRACVKKLLES-GADVNQ-GKGQ 222
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+PL A V + LM ++ +G +
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVEL 261
Score = 107 bits (269), Expect = 6e-26
Identities = 40/159 (25%), Positives = 64/159 (40%), Gaps = 8/159 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
L+ G VNI + +P+H+A G +LL H +VN + L A +
Sbjct: 77 NLISQGWAVNIITADHVSPLHEACLGGHLSCVKILLKHGAQVNG--VTADWHTPLFNACV 134
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
G+ +L + A+V SD +P+H A H+E V L+ NI+
Sbjct: 135 SGSWDCVNLLLQ---HGASVQPESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHL 190
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL A Q + + L+ ++ Q + LH
Sbjct: 191 GTPLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHA 228
Score = 96.8 bits (242), Expect = 2e-22
Identities = 26/135 (19%), Positives = 57/135 (42%), Gaps = 6/135 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL++G +V +++ +P+H+A +G E L+++ N+ + S L A
Sbjct: 143 LLLQHGASVQP-ESDLASPIHEAARRGHVECVNSLIAY-GGNIDHKISHLGTPLYLACEN 200
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+K+L A V + +PLH E+ LL++ + A + + +
Sbjct: 201 QQRACVKKLLESG---ADVNQGKGQDSPLHAVVRTASEELACLLMDF-GADTQAKNAEGK 256
Query: 244 TPLMAAVGQGQTSVI 258
P+ + + +
Sbjct: 257 RPVELVPPESPLAQL 271
Score = 82.2 bits (204), Expect = 2e-17
Identities = 24/159 (15%), Positives = 47/159 (29%), Gaps = 41/159 (25%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQ-LLLLSHPEVNLYLENSKGFNILNYAVL 182
L+ G ++ D Q M + G + + LLS+P +
Sbjct: 13 GLVPRGSHMASMDGKQ-GGMDGSKPAGPRDFPGIRLLSNPLMG----------------- 54
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
++P+H A + H + L+ + +N +
Sbjct: 55 ---------------------DAVSDWSPMHEAAIHGHQLSLRNLISQ-GWAVNIITADH 92
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+PL A G S + L+ ++ D + L
Sbjct: 93 VSPLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFN 131
Score = 70.2 bits (173), Expect = 2e-13
Identities = 16/119 (13%), Positives = 42/119 (35%), Gaps = 16/119 (13%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
L+ G N++ + ++ TP++ A LL +VN + + L+ V
Sbjct: 175 SLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLESGADVN---QGKGQDSPLHAVVR 231
Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
+ ++ ++ K ++G P+ + + + L + ++
Sbjct: 232 TASEELACLLMDFGADTQA------KNAEGKRPVELVPPESPLAQL-FLERE-GASLPK 282
Score = 52.1 bits (126), Expect = 2e-07
Identities = 26/171 (15%), Positives = 49/171 (28%), Gaps = 62/171 (36%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
+ +H A +G VE +N L+A G + + T L+ A + ++ + SGA
Sbjct: 158 ASPIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLLE---SGA 214
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
+ +N D+P
Sbjct: 215 D----------------------------------VNQG-------KGQDSPLHAVVRTA 233
Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
S E + +L+ G + ++ P+ + QL L
Sbjct: 234 SEELACLLMDF-------GADTQAKNAEGKRPVELVPPES-PLAQLFLERE 276
Score = 48.3 bits (116), Expect = 3e-06
Identities = 9/59 (15%), Positives = 19/59 (32%), Gaps = 2/59 (3%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGAN 59
+ LH + E +L+ GA + G + + + + GA+
Sbjct: 223 DSPLHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQLFLERE--GAS 279
Score = 44.4 bits (106), Expect = 6e-05
Identities = 14/99 (14%), Positives = 29/99 (29%), Gaps = 32/99 (32%)
Query: 214 VACFNDHIEIVELLVEKYKVNINALDLKK------------------------------- 242
+ + H LV + ++ ++D K+
Sbjct: 1 MGSSHHHHHHSSGLVPR-GSHMASMDGKQGGMDGSKPAGPRDFPGIRLLSNPLMGDAVSD 59
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+P+ A G + L+ + A++I D LH
Sbjct: 60 WSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHE 98
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 102 bits (258), Expect = 1e-25
Identities = 29/143 (20%), Positives = 52/143 (36%), Gaps = 14/143 (9%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+ +N D TP+ A A G + LL + + L + L+ A
Sbjct: 21 TRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGADPQL--LGKGRESALSLACS 78
Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
+G + + +L +N +G TPL A +H++ V++L+E +
Sbjct: 79 KGYTDIVKMLLDCGVDVNE------YDWNGGTPLLYAVHGNHVKCVKMLLES-GADPTIE 131
Query: 239 DLKKRTPLMAAVGQGQTSVINYL 261
+ AV G SV +
Sbjct: 132 TDSGYNSMDLAVALGYRSVQQVI 154
Score = 86.7 bits (216), Expect = 4e-20
Identities = 23/119 (19%), Positives = 53/119 (44%), Gaps = 10/119 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL+NG + + +++ + A +KG+ +I +LL +VN Y + G L YAV
Sbjct: 54 FLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEY--DWNGGTPLLYAVH 111
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
++K + +L + + +T G+ + +A + + +++ + +
Sbjct: 112 GNHVKCVKMLLESGADPTI----ETDSGYNSMDLAVALGYRSVQQVIESH-LLKLLQNI 165
Score = 75.9 bits (188), Expect = 2e-16
Identities = 22/105 (20%), Positives = 43/105 (40%), Gaps = 3/105 (2%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
++ +G M + + +GFTPL A + I +VE L++ +
Sbjct: 7 VHQLAAQGEMLYLATRIEQENVINH--TDEEGFTPLMWAAAHGQIAVVEFLLQN-GADPQ 63
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L + + L A +G T ++ L+ V ++ D +G L +
Sbjct: 64 LLGKGRESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLY 108
Score = 69.0 bits (170), Expect = 7e-14
Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+H + + +E+ + IN D + TPLM A GQ +V+ +L+
Sbjct: 2 ANSLSVHQLAAQGEMLYLATRIEQ-ENVINHTDEEGFTPLMWAAAHGQIAVVEFLLQNGA 60
Query: 267 ALDIQDIDGNGLLHF 281
+ L
Sbjct: 61 DPQLLGKGRESALSL 75
Score = 45.5 bits (109), Expect = 8e-06
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+H LA QG + L + + + + D+ G T L +AA + ++
Sbjct: 4 SLSVHQLAAQGEMLYLATRIEQENVINHTDEEGFTPLMWAAAHGQIAVVEF 54
Score = 42.0 bits (100), Expect = 1e-04
Identities = 12/51 (23%), Positives = 19/51 (37%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T L A G + + LL GA ++AL A D +++
Sbjct: 37 FTPLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKM 87
Score = 40.4 bits (96), Expect = 4e-04
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
++ L + +G + + +LL G V D G T L YA GN +++
Sbjct: 70 ESALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKM 120
Score = 39.7 bits (94), Expect = 9e-04
Identities = 11/51 (21%), Positives = 19/51 (37%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T L + V+ + +LL GA D+G ++ A Q+
Sbjct: 103 GTPLLYAVHGNHVKCVKMLLESGADPTIETDSGYNSMDLAVALGYRSVQQV 153
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 104 bits (263), Expect = 1e-25
Identities = 32/151 (21%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
N ++ N+ +P+H A G +I +L+ N+ + L A +++ +
Sbjct: 3 NFKMEHQNKRSPLHAAAEAGHVDICHMLVQA-GANIDTCSEDQRTPLMEAAENNHLEAVK 61
Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
++ + K ++G T LH+A H E+V+ L+ ++++N D TP++ A
Sbjct: 62 YLIKAGALVDP--KDAEGSTCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT 119
Query: 251 GQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ L+ + ++I+D + N LH+
Sbjct: 120 EYKHVDLVKLLLSKGSDINIRDNEENICLHW 150
Score = 96.7 bits (242), Expect = 8e-23
Identities = 36/140 (25%), Positives = 63/140 (45%), Gaps = 7/140 (5%)
Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
LL NG +VN QD+ TPM A ++ LLLS ++N+ +++ L++A
Sbjct: 95 YLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINI--RDNEENICLHWAA 152
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G + + E +LA +L G +PLH+A + + V L + + ++ + +
Sbjct: 153 FSGCVDIAEILLAAKCDLHA--VNIHGDSPLHIAARENRYDCVVLFLSR-DSDVTLKNKE 209
Query: 242 KRTPLMAAVGQGQTSVINYL 261
TPL A Q +
Sbjct: 210 GETPLQCASLNSQVWSALQM 229
Score = 95.6 bits (239), Expect = 2e-22
Identities = 37/158 (23%), Positives = 59/158 (37%), Gaps = 36/158 (22%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L++ G V+ +D T +H A KG E+ LLS+
Sbjct: 62 YLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---------------------- 99
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G M V + G+TP+ A H+++V+LL+ K +IN D ++
Sbjct: 100 GQMDVNC-------------QDDGGWTPMIWATEYKHVDLVKLLLSK-GSDINIRDNEEN 145
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L A G + L+ L +I G+ LH
Sbjct: 146 ICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHI 183
Score = 81.7 bits (203), Expect = 1e-17
Identities = 26/106 (24%), Positives = 48/106 (45%), Gaps = 3/106 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL G ++NI+DN ++ +H A G +I +LL+ + +L+ N G + L+ A
Sbjct: 130 LLSKGSDINIRDNEENICLHWAAFSGCVDIAEILLAA-KCDLHAVNIHGDSPLHIAAREN 188
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
L+ + ++ K +G TPL A N + + +
Sbjct: 189 RYDCVVLFLSRDSDVTL--KNKEGETPLQCASLNSQVWSALQMSKA 232
Score = 43.9 bits (105), Expect = 5e-05
Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
++ LH A G V+ ++L+ GA + + T L AA N +A++ GA
Sbjct: 12 RSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLMEAAENNHLEAVKYLIKA--GAL 69
Score = 43.9 bits (105), Expect = 6e-05
Identities = 16/51 (31%), Positives = 22/51 (43%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T L A +E + L+ GA V D G T LH AA + +Q
Sbjct: 45 RTPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQY 95
Score = 43.9 bits (105), Expect = 6e-05
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
LH A+ GCV+ ILLA ++ + GD+ LH AA N+ D + + S ++
Sbjct: 145 NICLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFLSR--DSD 202
Score = 43.2 bits (103), Expect = 1e-04
Identities = 11/51 (21%), Positives = 24/51 (47%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+ LHI A + + + + L+R + V + G+T L A+ ++ +
Sbjct: 178 DSPLHIAARENRYDCVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQ 228
Score = 41.6 bits (99), Expect = 4e-04
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T + V+ + +LL++G+ + D+ + LH+AAF D +I
Sbjct: 112 WTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162
Score = 39.7 bits (94), Expect = 0.001
Identities = 12/49 (24%), Positives = 18/49 (36%)
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+N KR+PL AA G + + L+ +D D L
Sbjct: 2 MNFKMEHQNKRSPLHAAAEAGHVDICHMLVQAGANIDTCSEDQRTPLME 50
Score = 39.7 bits (94), Expect = 0.002
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A +G E + LL+ G V DD G T + +A D +++
Sbjct: 78 STCLHLAAKKGHYEVVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKL 129
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 101 bits (255), Expect = 3e-25
Identities = 37/155 (23%), Positives = 61/155 (39%), Gaps = 9/155 (5%)
Query: 125 LLRNGCN-VNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LR G N VN D TP+ A A G E LL + ++ + + L+ A
Sbjct: 21 HLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGADPHI--LAKERESALSLAST 78
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G + +L L R+ + +G TPL A +H++ VE L+ + ++
Sbjct: 79 GGYTDIV-GLL-LERD-VDINIYDWNGGTPLLYAVRGNHVKCVEALLAR-GADLTTEADS 134
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
TP+ AV G V + + L ++
Sbjct: 135 GYTPMDLAVALGYRKVQQVIENHILKLFQSNLVPA 169
Score = 92.1 bits (230), Expect = 8e-22
Identities = 29/123 (23%), Positives = 58/123 (47%), Gaps = 6/123 (4%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL G + +I +++ + A G+ +I LLL ++N+Y + G L YAV
Sbjct: 54 FLLEWGADPHILAKERESALSLASTGGYTDIVGLLLERDVDINIY--DWNGGTPLLYAVR 111
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
++K E +LA +L T + G+TP+ +A + ++ +++ + + +L
Sbjct: 112 GNHVKCVEALLARGADLTT--EADSGYTPMDLAVALGYRKVQQVIENH-ILKLFQSNLVP 168
Query: 243 RTP 245
P
Sbjct: 169 ADP 171
Score = 79.8 bits (198), Expect = 1e-17
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
++ +G + ++ L NL GFTPL A IE V L+E + +
Sbjct: 6 IHQLAAQGELDQLKEHLRKGDNLVNK-PDERGFTPLIWASAFGEIETVRFLLEW-GADPH 63
Query: 237 ALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L ++ + L A G T ++ L+ RDV ++I D +G L +
Sbjct: 64 ILAKERESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLY 108
Score = 66.7 bits (164), Expect = 4e-13
Identities = 12/74 (16%), Positives = 26/74 (35%)
Query: 208 GFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVA 267
+H ++ ++ + K +N D + TPL+ A G+ + +L+
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFGEIETVRFLLEWGAD 61
Query: 268 LDIQDIDGNGLLHF 281
I + L
Sbjct: 62 PHILAKERESALSL 75
Score = 43.2 bits (103), Expect = 5e-05
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 1 KTLLHILAYQGCVEELNILLARGA-CVYYPDDAGDTALHYAAFGN 44
+H LA QG +++L L +G V PD+ G T L +A+
Sbjct: 3 SLSIHQLAAQGELDQLKEHLRKGDNLVNKPDERGFTPLIWASAFG 47
Score = 42.4 bits (101), Expect = 1e-04
Identities = 13/50 (26%), Positives = 22/50 (44%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T L + G +E + LL GA + ++AL A+ G D + +
Sbjct: 38 TPLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGL 87
Score = 40.1 bits (95), Expect = 5e-04
Identities = 13/51 (25%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
++ L + + G + + +LL R + D G T L YA GN ++
Sbjct: 70 ESALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEA 120
Score = 38.9 bits (92), Expect = 0.001
Identities = 14/51 (27%), Positives = 20/51 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T L V+ + LLARGA + D+G T + A Q+
Sbjct: 103 GTPLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQV 153
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 103 bits (260), Expect = 4e-25
Identities = 33/160 (20%), Positives = 68/160 (42%), Gaps = 7/160 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L+ G +V D T +H A ++ +S V+ L L++A +
Sbjct: 28 LVEAGYDVRQPDKENVTLLHWAAINNRIDLVKYYISKGAIVD-QLGGDLNSTPLHWATRQ 86
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G++ + +++ + + +G + +H+A H IV L+ K +++ +D
Sbjct: 87 GHLSMVVQLMKYGADPSL--IDGEGCSCIHLAAQFGHTSIVAYLIAK-GQDVDMMDQNGM 143
Query: 244 TPLMAAVGQG-QTSVINYLMLRDVALDIQD-IDGNGLLHF 281
TPLM A + L+ +V++++ D N LH+
Sbjct: 144 TPLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHW 183
Score = 102 bits (256), Expect = 1e-24
Identities = 32/140 (22%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L++ G + ++ D + +H A G I L++ +V++ + G L +A R
Sbjct: 95 LMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYR 152
Query: 184 GNMKVTEKILALNRNLATVPKT--SDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
+ ++L L N +V T LH A + ++ LL+E N++A ++K
Sbjct: 153 THSVDPTRLL-LTFN-VSVNLGDKYHKNTALHWAVLAGNTTVISLLLEA-GANVDAQNIK 209
Query: 242 KRTPLMAAVGQGQTSVINYL 261
+ L A + +IN+L
Sbjct: 210 GESALDLAKQRKNVWMINHL 229
Score = 101 bits (254), Expect = 2e-24
Identities = 39/160 (24%), Positives = 74/160 (46%), Gaps = 7/160 (4%)
Query: 125 LLRNGCNVNIQDNNQD-TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+ G V+ + + TP+H A +G + + L+ + + L + +G + ++ A
Sbjct: 61 YISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLMKY-GADPSLIDGEGCSCIHLAAQF 119
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH-IEIVELLVEKYKVNINALD-LK 241
G+ + ++A +++ +G TPL A + H ++ LL+ V++N D
Sbjct: 120 GHTSIVAYLIAKGQDVDM--MDQNGMTPLMWAAYRTHSVDPTRLLLTF-NVSVNLGDKYH 176
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
K T L AV G T+VI+ L+ +D Q+I G L
Sbjct: 177 KNTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDL 216
Score = 88.3 bits (220), Expect = 8e-20
Identities = 27/152 (17%), Positives = 49/152 (32%), Gaps = 38/152 (25%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
++ D+ + A G E L+ G+++
Sbjct: 1 HMTHIDDYSTWDIVKATQYGIYERCRELVEA-----------GYDV-------------- 35
Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK-RTPLMAA 249
+ + T LH A N+ I++V+ + K ++ L TPL A
Sbjct: 36 -----RQ------PDKENVTLLHWAAINNRIDLVKYYISK-GAIVDQLGGDLNSTPLHWA 83
Query: 250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
QG S++ LM + D +G +H
Sbjct: 84 TRQGHLSMVVQLMKYGADPSLIDGEGCSCIHL 115
Score = 77.9 bits (193), Expect = 3e-16
Identities = 28/115 (24%), Positives = 49/115 (42%), Gaps = 6/115 (5%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFE-EIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
L+ G +V++ D N TP+ A + + LLL+ VNL + L++AVL
Sbjct: 128 LIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTFNVSVNL-GDKYHKNTALHWAVL 186
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
GN V +L N+ + G + L +A ++ ++ L E +
Sbjct: 187 AGNTTVISLLLEAGANVDA--QNIKGESALDLAKQRKNVWMINHLQEA-RQAKGY 238
Score = 52.8 bits (128), Expect = 6e-08
Identities = 23/171 (13%), Positives = 52/171 (30%), Gaps = 58/171 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAF-GNKPDAIQI-NSHVSGA 58
+ +H+ A G + L+A+G V D G T L +AA+ + D ++ +
Sbjct: 110 CSCIHLAAQFGHTSIVAYLIAKGQDVDMMDQNGMTPLMWAAYRTHSVDPTRLLLTF--NV 167
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP-------- 110
+ +N+ ++ +T
Sbjct: 168 S----------------------------------VNLG-----DKYHKNTALHWAVLAG 188
Query: 111 SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+ +L++ G NV+ Q+ ++ + A + + L
Sbjct: 189 NTTVISLLLEA-------GANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232
Score = 45.1 bits (108), Expect = 3e-05
Identities = 14/64 (21%), Positives = 21/64 (32%), Gaps = 3/64 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH G +++LL GA V + G++AL A I
Sbjct: 178 NTALHWAVLAGNTTVISLLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA--RQA 235
Query: 60 RSRK 63
+
Sbjct: 236 KGYD 239
Score = 40.9 bits (97), Expect = 6e-04
Identities = 13/51 (25%), Positives = 19/51 (37%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH QG + + L+ GA D G + +H AA +
Sbjct: 77 STPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAY 127
Score = 40.1 bits (95), Expect = 0.001
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPD-DAGDTALHYAAFGNKPDAIQI 51
TLLH A ++ + +++GA V D T LH+A +
Sbjct: 43 VTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQ 94
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 102 bits (256), Expect = 1e-24
Identities = 46/294 (15%), Positives = 88/294 (29%), Gaps = 94/294 (31%)
Query: 1 KTLLHILAYQGCVEE----LNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHV 55
T LHI QG + +N+ G + ++ T LH A P +++ +
Sbjct: 10 DTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVITTLPSVVRLLVTA- 68
Query: 56 SGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP----- 110
GA+ + + T
Sbjct: 69 -GASPMALDRHGQ----------------------------------------TAAHLAC 87
Query: 111 ---SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY 167
S C L+ ++ ++ + T +H AV +E LLL
Sbjct: 88 EHRSPTCLRALLDSA---APGTLDLEARNYDGLTALHVAVNTECQETVQLLLER------ 138
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G +I + + G +PL A N+ + +V+LL
Sbjct: 139 -----GADI--------DAVDIK----------------SGRSPLIHAVENNSLSMVQLL 169
Query: 228 VEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ N+NA + L +A G+G ++ L+ +++ + L
Sbjct: 170 LQH-GANVNAQMYSGSSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMV 222
Score = 97.5 bits (244), Expect = 4e-23
Identities = 30/144 (20%), Positives = 59/144 (40%), Gaps = 11/144 (7%)
Query: 124 VLLRNG----CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILN 178
LL + ++ ++ + T +H AV +E LLL +++ S G + L
Sbjct: 97 ALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLERGADIDAVDIKS-GRSPLI 155
Query: 179 YAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
+AV ++ + + +L + A V + G + LH A + +V LV + +
Sbjct: 156 HAVENNSLSMVQ-LLLQHG--ANVNAQMYSGSSALHSASGRGLLPLVRTLVRS-GADSSL 211
Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
+ TPLM A + ++
Sbjct: 212 KNCHNDTPLMVARSRRVIDILRGK 235
Score = 81.3 bits (202), Expect = 2e-17
Identities = 32/154 (20%), Positives = 52/154 (33%), Gaps = 37/154 (24%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
D + DTP+H AV +G L++ L G + ++
Sbjct: 2 ATRADEDGDTPLHIAVVQGNLPAVHRLVN-------LFQQGGREL--------DI----- 41
Query: 192 ILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
+ TPLH+A +V LLV + ALD +T A
Sbjct: 42 ------------YNNLRQTPLHLAVITTLPSVVRLLVTA-GASPMALDRHGQTAAHLACE 88
Query: 252 QGQTSVINYLMLR--DVALDIQDIDGNGL--LHF 281
+ + L+ LD++ + +GL LH
Sbjct: 89 HRSPTCLRALLDSAAPGTLDLEARNYDGLTALHV 122
Score = 78.3 bits (194), Expect = 2e-16
Identities = 36/243 (14%), Positives = 63/243 (25%), Gaps = 97/243 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYY----PDDAGDTALHYAAFGNKPDAIQI-NSHV 55
+T H+ L LL A + G TALH A + +Q+
Sbjct: 80 QTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLLER- 138
Query: 56 SGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP----- 110
GA+ ++ + +P
Sbjct: 139 -GAD----------------------------------IDAV-----DIKSGRSPLIHAV 158
Query: 111 ---SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLY 167
S +L++ +G NVN Q + + +H A +G + L+
Sbjct: 159 ENNSLSMVQLLLQ-------HGANVNAQMYSGSSALHSASGRGLLPLVRTLVRS------ 205
Query: 168 LENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G + ++ K TPL VA I+I+
Sbjct: 206 -----GADS--------SL-----------------KNCHNDTPLMVARSRRVIDILRGK 235
Query: 228 VEK 230
+
Sbjct: 236 ATR 238
Score = 44.8 bits (107), Expect = 3e-05
Identities = 12/60 (20%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
+ LH + +G + + L+ GA + DT L A D ++ + A+
Sbjct: 184 SSALHSASGRGLLPLVRTLVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR--PAS 241
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 102 bits (257), Expect = 2e-24
Identities = 32/158 (20%), Positives = 63/158 (39%), Gaps = 10/158 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L+ G +V ++ DTP+ A + EE+ ++ V++ R
Sbjct: 124 YLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDI--------EAARKEEER 175
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
++ + L + ++ V G T LHVA + E+++LL++ + ++N D
Sbjct: 176 IMLRDARQWL-NSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-RYDVNIKDYDGW 233
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL AA G+ L+ ++ + G
Sbjct: 234 TPLHAAAHWGKEEACRILVENLCDMEAVNKVGQTAFDV 271
Score = 98.7 bits (247), Expect = 6e-23
Identities = 38/220 (17%), Positives = 70/220 (31%), Gaps = 25/220 (11%)
Query: 132 VNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP-EVNLYLENSKGFNILNYAVLRGNMKVTE 190
+ + D Q G E + + + A G+ +
Sbjct: 1 MKMADAKQKRNEQLKRWIGSETDLEPPVVKRKKTK---VKFDDGAVFLAACSSGDTEEVL 57
Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAV 250
++L ++ DG T LH AC +D++++V+ LVE NIN D + PL AA
Sbjct: 58 RLLERGADINY--ANVDGLTALHQACIDDNVDMVKFLVEN-GANINQPDNEGWIPLHAAA 114
Query: 251 GQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGG 310
G + YL+ + + + +G+ L E + + ++ G
Sbjct: 115 SCGYLDIAEYLISQGAHVGAVNSEGDTPLDI-----------AEEEAMEELLQNEVNRQG 163
Query: 311 P-------SNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
E +L +L + L
Sbjct: 164 VDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTAL 203
Score = 95.6 bits (239), Expect = 7e-22
Identities = 39/184 (21%), Positives = 76/184 (41%), Gaps = 31/184 (16%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
LL G ++N + + T +H A ++ L+ + +N +++G+ L+ A
Sbjct: 59 LLERGADINYANVDGLTALHQACIDDNVDMVKFLVENGANINQ--PDNEGWIPLHAAASC 116
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA------ 237
G + + E +++ ++ S+G TPL +A E+++ V + V+I A
Sbjct: 117 GYLDIAEYLISQGAHVGA--VNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIEAARKEEE 174
Query: 238 ----LDLKK----------------RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
D ++ T L A +G T V+ L+ ++I+D DG
Sbjct: 175 RIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQARYDVNIKDYDGWT 234
Query: 278 LLHF 281
LH
Sbjct: 235 PLHA 238
Score = 91.8 bits (229), Expect = 1e-20
Identities = 48/276 (17%), Positives = 79/276 (28%), Gaps = 89/276 (32%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
LH A G ++ L+++GA V + GDT L A + +Q +N G
Sbjct: 107 WIPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQ--GV 164
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
+ +ER M D +
Sbjct: 165 DIEAARKEEERI-------------------------------MLRDA-----RQ----- 183
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
L N + T +H A AKG+ E+ LL+ +++
Sbjct: 184 -----WLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLLIQA-----------RYDV-- 225
Query: 179 YAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
N K DG+TPLH A E +LVE ++ A+
Sbjct: 226 -----------------NI------KDYDGWTPLHAAAHWGKEEACRILVEN-LCDMEAV 261
Query: 239 DLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
+ +T A + + + L +
Sbjct: 262 NKVGQTAFDVADEDILGYLEE--LQKKQNLLHSEKR 295
Score = 42.9 bits (102), Expect = 2e-04
Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ G EE+ LL RGA + Y + G TALH A + D ++ + GAN
Sbjct: 42 AVFLAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLVEN--GAN 98
Score = 42.5 bits (101), Expect = 2e-04
Identities = 7/45 (15%), Positives = 14/45 (31%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
K + + G +L + + D G L + G+
Sbjct: 9 KRNEQLKRWIGSETDLEPPVVKRKKTKVKFDDGAVFLAACSSGDT 53
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 99.0 bits (248), Expect = 3e-24
Identities = 43/144 (29%), Positives = 71/144 (49%), Gaps = 14/144 (9%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+L+ NG +VN +D + TP+H A G EI +LL + +VN + G L A L
Sbjct: 32 ILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--VDHAGMTPLRLAAL 89
Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINAL 238
G++++ E +L +N +G TPLH+A H+EIVE+L++ ++NA
Sbjct: 90 FGHLEIVEVLLKNGADVNA------NDMEGHTPLHLAAMFGHLEIVEVLLKN-GADVNAQ 142
Query: 239 DLKKRTPLMAAVGQGQTSVINYLM 262
D +T ++ G + L
Sbjct: 143 DKFGKTAFDISIDNGNEDLAEILQ 166
Score = 91.7 bits (229), Expect = 8e-22
Identities = 37/157 (23%), Positives = 74/157 (47%), Gaps = 11/157 (7%)
Query: 129 GCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNM 186
G + + ++ + +A G ++ +L+++ +VN E++ G+ L+ A G++
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGRDDEVRILMANGADVNA--EDASGWTPLHLAAFNGHL 60
Query: 187 KVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
++ E +L + N G TPL +A H+EIVE+L++ ++NA D++ T
Sbjct: 61 EIVEVLLKNGADVNA----VDHAGMTPLRLAALFGHLEIVEVLLKN-GADVNANDMEGHT 115
Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
PL A G ++ L+ ++ QD G
Sbjct: 116 PLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDI 152
Score = 78.9 bits (196), Expect = 2e-17
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 9/110 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
VLL+NG +VN D+ TP+ A G EI +LL + +VN + +G L+ A +
Sbjct: 65 VLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLLKNGADVNA--NDMEGHTPLHLAAM 122
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G++++ E +L + N + G T ++ N + ++ E+L +
Sbjct: 123 FGHLEIVEVLLKNGADVNA----QDKFGKTAFDISIDNGNEDLAEILQKL 168
Score = 43.5 bits (104), Expect = 4e-05
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 5/61 (8%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
T LH+ A+ G +E + +LL GA V D AG T L AA + ++ + + GA
Sbjct: 48 WTPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-KN--GA 104
Query: 59 N 59
+
Sbjct: 105 D 105
Score = 42.3 bits (101), Expect = 1e-04
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGAN 59
L A G +E+ IL+A GA V D +G T LH AAF + ++ + + GA+
Sbjct: 16 KKLLEAARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL-KN--GAD 72
Score = 40.4 bits (96), Expect = 5e-04
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 5/61 (8%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
T L + A G +E + +LL GA V D G T LH AA + ++ + + GA
Sbjct: 81 MTPLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-KN--GA 137
Query: 59 N 59
+
Sbjct: 138 D 138
Score = 39.7 bits (94), Expect = 9e-04
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G TA + D +I
Sbjct: 114 HTPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEI 164
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 100 bits (251), Expect = 1e-23
Identities = 26/160 (16%), Positives = 57/160 (35%), Gaps = 10/160 (6%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
+ + D + + + A+A + LL+ NL + L+ A
Sbjct: 16 KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNAGALKNLL----ENEFPLHQAAT 71
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK- 241
+ K+ + +L + + G T L+ A + +++ V+L V+K +
Sbjct: 72 LEDTKIVKILLFSGLDDSQ--FDDKGNTALYYAVDSGNMQTVKLFVKK-NWRLMFYGKTG 128
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+T AV S+++Y L ++ +H
Sbjct: 129 WKTSFYHAVMLNDVSIVSYF-LSEIPSTFDLAILLSCIHI 167
Score = 99 bits (250), Expect = 2e-23
Identities = 23/155 (14%), Positives = 64/155 (41%), Gaps = 9/155 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAV 181
+LL +G + + D+ +T ++ AV G + L + + G+ +AV
Sbjct: 80 ILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAV 137
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
+ ++ + L+ + + + + +H+ N H++++ LL++ + N +
Sbjct: 138 MLNDVSIVSYFLS---EIPSTFDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSL 193
Query: 242 KRTP-LMAAVGQGQTSVINYLMLRDVALDIQDIDG 275
P + A+ ++ L D+ + +++
Sbjct: 194 LFIPDIKLAIDNKDIEMLQALFKYDINIYSANLEN 228
Score = 99.1 bits (248), Expect = 3e-23
Identities = 29/160 (18%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL G N+ +N + P+H A +I +LL ++ + KG L YAV
Sbjct: 49 TLLNAGALKNLLEN--EFPLHQAATLEDTKIVKILLFS-GLDDSQFDDKGNTALYYAVDS 105
Query: 184 GNMKVTEKILALNRNLATVPKTSDGF-TPLHVACFNDHIEIVELLVEKYKVNINALDLKK 242
GNM+ + + N L G+ T + A + + IV + + +
Sbjct: 106 GNMQTVKLFVKKNWRLMF--YGKTGWKTSFYHAVMLNDVSIVSYFLSE--IPSTFDLAIL 161
Query: 243 RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN-GLLHF 281
+ + + G ++ L+ + + + +
Sbjct: 162 LSCIHITIKNGHVDMMILLLDYMTSTNTNNSLLFIPDIKL 201
Score = 92.6 bits (231), Expect = 6e-21
Identities = 21/159 (13%), Positives = 52/159 (32%), Gaps = 14/159 (8%)
Query: 124 VLLRNGCNVNIQDNN-QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+ ++ + T + AV I LS + + + ++ +
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTF--DLAILLSCIHITIK 170
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTP-LHVACFNDHIEIVELLVEKYKVNINALDLK 241
G++ + +L + T S F P + +A N IE+++ L + +NI
Sbjct: 171 NGHVDMMILLLDYMTSTNT--NNSLLFIPDIKLAIDNKDIEMLQALFKY-DINIY----- 222
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+ + V + ++ + V + +
Sbjct: 223 --SANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259
Score = 92.2 bits (230), Expect = 7e-21
Identities = 37/265 (13%), Positives = 74/265 (27%), Gaps = 62/265 (23%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ LH A + + ILL G DD G+TAL+YA +++
Sbjct: 63 EFPLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVKLFVKK--NWR 120
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGI 117
L + T A
Sbjct: 121 ----------------------------------LMFY-----GKTGWKTSFYHAVMLN- 140
Query: 118 LIKQDFV--LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGF- 174
V L + + +H + G ++ +LLL + + NS F
Sbjct: 141 --DVSIVSYFLSEIPS-TFDLAILLSCIHITIKNGHVDMMILLLDY-MTSTNTNNSLLFI 196
Query: 175 NILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVN 234
+ A+ ++++ + + + ++ D EI ++++EK V
Sbjct: 197 PDIKLAIDNKDIEMLQALFK---------YDINIYSANLENVLLDDAEIAKMIIEK-HVE 246
Query: 235 INALDLKKRTPLMAAVGQGQTSVIN 259
+ K ++ + N
Sbjct: 247 YKSDSYTKDLDIVKNNKLDEIISKN 271
Score = 53.3 bits (129), Expect = 8e-08
Identities = 16/117 (13%), Positives = 34/117 (29%), Gaps = 17/117 (14%)
Query: 124 VLLRNGCNVNIQDNNQDTP-MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNI---LNY 179
+LL + N ++ P + A+ E+ L + NI
Sbjct: 179 LLLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALFKY-----------DINIYSANLE 227
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
VL + ++ + I+ + + + + D I + VN
Sbjct: 228 NVLLDDAEIAKMIIEKHVEYKS--DSYTKDLDIVKNNKLDEIISKNKELRLMYVNCV 282
Score = 32.1 bits (74), Expect = 0.46
Identities = 9/50 (18%), Positives = 17/50 (34%), Gaps = 3/50 (6%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
L I ++ ++L + D G +A +YA N +
Sbjct: 3 DLSRINTWK--SKQL-KSFLSSKDTFKADVHGHSASYYAIADNNVRLVCT 49
Score = 29.0 bits (66), Expect = 5.0
Identities = 5/46 (10%), Positives = 11/46 (23%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLEN 170
++ +D + + L VN +N
Sbjct: 240 IIEKHVEYKSDSYTKDLDIVKNNKLDEIISKNKELRLMYVNCVKKN 285
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 98.3 bits (246), Expect = 2e-23
Identities = 26/141 (18%), Positives = 60/141 (42%), Gaps = 9/141 (6%)
Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+RN +++ + ++ TP+ A E + L++ ++ + G + L++A
Sbjct: 76 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAA 134
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
N+ +L N+++ + + TPL +A E ++L++ N + D
Sbjct: 135 VNNVDAAVVLLKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDH 189
Query: 241 KKRTPLMAAVGQGQTSVINYL 261
R P A + ++ L
Sbjct: 190 MDRLPRDIAQERMHHDIVRLL 210
Score = 92.9 bits (232), Expect = 1e-21
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 36/157 (22%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL + NIQDN TP+H AV+ + + +L+ + + ++
Sbjct: 44 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN----------RATDL-------- 85
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ + DG TPL +A ++E L+ ++NA+D ++
Sbjct: 86 -----------DA------RMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKS 127
Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L A L+ D+Q+ L
Sbjct: 128 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 164
Score = 85.9 bits (214), Expect = 3e-19
Identities = 27/158 (17%), Positives = 51/158 (32%), Gaps = 37/158 (23%)
Query: 125 LLRNGCNV-NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+ G ++ N D +T +H A + LL +
Sbjct: 10 FIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA-----------SADA------- 51
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N+ + + G TPLH A D + ++L+ +++A
Sbjct: 52 -NI-----------------QDNMGRTPLHAAVSADAQGVFQILIRNRATDLDARMHDGT 93
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL+ A ++ L+ ++ D G LH+
Sbjct: 94 TPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 131
Score = 81.3 bits (202), Expect = 1e-17
Identities = 25/110 (22%), Positives = 47/110 (42%), Gaps = 9/110 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L+ + +VN D+ + +H A A + ++LL + N ++N++ L A
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN-GANKDMQNNREETPLFLAARE 168
Query: 184 GNMKVTEKILAL---NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G+ + + +L NR++ P +A H +IV LL E
Sbjct: 169 GSYETAK-VLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLLDEY 213
Score = 45.5 bits (109), Expect = 2e-05
Identities = 16/60 (26%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
K+ LH A V+ +LL GA ++ +T L AA + ++ H AN
Sbjct: 126 KSALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLLDH--FAN 183
Score = 45.1 bits (108), Expect = 3e-05
Identities = 21/60 (35%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T L + A L L+ A V DD G +ALH+AA N DA + + GAN
Sbjct: 93 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GAN 150
Score = 44.3 bits (106), Expect = 4e-05
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A + LL A D+ G T LH A + QI
Sbjct: 26 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 76
Score = 43.6 bits (104), Expect = 7e-05
Identities = 13/62 (20%), Positives = 22/62 (35%), Gaps = 3/62 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T L + A +G E +LL A D A D +++ + +
Sbjct: 159 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDEY--NLV 216
Query: 60 RS 61
RS
Sbjct: 217 RS 218
Score = 42.0 bits (100), Expect = 2e-04
Identities = 13/64 (20%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 219 DHIEIVELLVEKYKVNI-NALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNG 277
D ++ + + ++ N D T L A ++ L+ +IQD G
Sbjct: 2 DAPAVISDFIYQ-GASLHNQTDRTGETALHLAARYSRSDAAKRLLEASADANIQDNMGRT 60
Query: 278 LLHF 281
LH
Sbjct: 61 PLHA 64
Score = 39.7 bits (94), Expect = 0.001
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
+T LH IL+ A + G T L AA ++ + A
Sbjct: 59 RTPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS--HA 116
Query: 59 N 59
+
Sbjct: 117 D 117
Score = 33.5 bits (78), Expect = 0.14
Identities = 13/51 (25%), Positives = 24/51 (47%), Gaps = 4/51 (7%)
Query: 11 GCVEELNILLARGACVY-YPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
++ + +GA ++ D G+TALH AA ++ DA + A+
Sbjct: 2 DAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SAD 50
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 97.1 bits (243), Expect = 2e-23
Identities = 37/138 (26%), Positives = 60/138 (43%), Gaps = 6/138 (4%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L+ N + +D T + AV I LLS N+ ++ G L ++++ G
Sbjct: 54 LVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK-GSNVNTKDFSGKTPLMWSIIFG 112
Query: 185 NMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
+++ L + A V + +G TPL VA EIV+ L+E +I+A DL
Sbjct: 113 YSEMSY-FLLEHG--ANVNDRNLEGETPLIVASKYGRSEIVKKLLEL-GADISARDLTGL 168
Query: 244 TPLMAAVGQGQTSVINYL 261
T +A G+ VI
Sbjct: 169 TAEASARIFGRQEVIKIF 186
Score = 72.4 bits (179), Expect = 7e-15
Identities = 29/109 (26%), Positives = 48/109 (44%), Gaps = 9/109 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL G NVN +D + TP+ ++ G+ E+ LL H VN N +G L A
Sbjct: 86 KLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVND--RNLEGETPLIVASK 143
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
G ++ +K+L L + + + G T A E++++ E
Sbjct: 144 YGRSEIVKKLLELGADISA----RDLTGLTAEASARIFGRQEVIKIFTE 188
Score = 69.3 bits (171), Expect = 9e-14
Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 1/78 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
+ S TPL VAC ++ LVE + D++ T L+ AV + + L+
Sbjct: 31 RDSYNRTPLMVACMLGMENAIDKLVEN-FDKLEDKDIEGSTALIWAVKNNRLGIAEKLLS 89
Query: 264 RDVALDIQDIDGNGLLHF 281
+ ++ +D G L +
Sbjct: 90 KGSNVNTKDFSGKTPLMW 107
Score = 44.7 bits (107), Expect = 2e-05
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T L + G ++ L+ + D G TAL +A N+ + S G+N
Sbjct: 36 RTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSK--GSN 93
Score = 43.9 bits (105), Expect = 4e-05
Identities = 8/38 (21%), Positives = 15/38 (39%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
LL G +++ +D T A G +E+ +
Sbjct: 152 KLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEV 189
Score = 42.4 bits (101), Expect = 1e-04
Identities = 14/61 (22%), Positives = 23/61 (37%), Gaps = 5/61 (8%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
T L + LL++G+ V D +G T L ++ + + H GA
Sbjct: 69 STALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-EH--GA 125
Query: 59 N 59
N
Sbjct: 126 N 126
Score = 41.6 bits (99), Expect = 2e-04
Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
KT L G E LL GA V + G+T L A+ + + ++ GA+
Sbjct: 102 KTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLEL--GAD 159
Score = 38.9 bits (92), Expect = 0.002
Identities = 15/51 (29%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T L + + G E + LL GA + D G TA A + + I+I
Sbjct: 135 ETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKI 185
Score = 37.0 bits (87), Expect = 0.009
Identities = 10/62 (16%), Positives = 18/62 (29%), Gaps = 13/62 (20%)
Query: 1 KTLLHILAYQGCVEELNILL-ARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSG 57
+ + I + + L+ L R D T L A +AI + +
Sbjct: 9 EIVEKIKDEKSINQNLDFLRNYR-------DSYNRTPLMVACMLGMENAIDKLV-EN--F 58
Query: 58 AN 59
Sbjct: 59 DK 60
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 95.2 bits (238), Expect = 4e-23
Identities = 27/142 (19%), Positives = 56/142 (39%), Gaps = 16/142 (11%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L R + + + T + G I L LL N+ +++ G + ++ A
Sbjct: 22 LHRELVHPDALNRFGKTALQVM-MFGSTAIALELLKQGASPNV--QDTSGTSPVHDAART 78
Query: 184 GNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
G + + ++ +N G P+H+A H +V L + +++ D
Sbjct: 79 GFLDTLKVLVEHGADVNV------PDGTGALPIHLAVQEGHTAVVSFLAA--ESDLHRRD 130
Query: 240 LKKRTPLMAAVGQGQTSVINYL 261
+ TPL A+ +G +++ L
Sbjct: 131 ARGLTPLELALQRGAQDLVDIL 152
Score = 79.8 bits (198), Expect = 9e-18
Identities = 31/110 (28%), Positives = 55/110 (50%), Gaps = 12/110 (10%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL+ G + N+QD + +P+HDA GF + +L+ H +VN+ + G ++ AV
Sbjct: 53 ELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNV--PDGTGALPIHLAVQ 110
Query: 183 RGNMKVTEKILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
G+ V + A L+R + + G TPL +A ++V++L
Sbjct: 111 EGHTAVVSFLAAESDLHR------RDARGLTPLELALQRGAQDLVDILQG 154
Score = 79.0 bits (196), Expect = 2e-17
Identities = 23/111 (20%), Positives = 44/111 (39%), Gaps = 5/111 (4%)
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEK 230
+ + L+ A RG+++ ++L +R L G T L V F I L+++
Sbjct: 1 RAGDRLSGAAARGDVQEVRRLL--HRELVHPDALNRFGKTALQVMMFG-STAIALELLKQ 57
Query: 231 YKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+ N D +P+ A G + L+ +++ D G +H
Sbjct: 58 -GASPNVQDTSGTSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHL 107
Score = 43.9 bits (105), Expect = 2e-05
Identities = 13/59 (22%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGAN 59
+ +H A G ++ L +L+ GA V PD G +H A + + ++
Sbjct: 69 TSPVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSF--LAAESD 125
Score = 43.6 bits (104), Expect = 3e-05
Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Query: 2 TLLHILAYQGCVEELNILL-ARGACVYYPDDAGDTALHYAAFGNK 45
L A +G V+E+ LL + G TAL FG+
Sbjct: 4 DRLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQVMMFGST 48
Score = 42.0 bits (100), Expect = 1e-04
Identities = 8/37 (21%), Positives = 19/37 (51%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
L +++ +D TP+ A+ +G +++ +L H
Sbjct: 119 FLAAESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
Score = 39.7 bits (94), Expect = 6e-04
Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 4/60 (6%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
KT L ++ + G LL +GA D +G + +H AA D +++ H GA+
Sbjct: 37 KTALQVMMF-GSTAIALELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLVEH--GAD 93
Score = 36.2 bits (85), Expect = 0.010
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+H+ +G ++ L A + ++ D G T L A D + I
Sbjct: 102 ALPIHLAVQEGHTAVVSFLAA-ESDLHRRDARGLTPLELALQRGAQDLVDI 151
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 94.4 bits (236), Expect = 7e-23
Identities = 37/140 (26%), Positives = 62/140 (44%), Gaps = 8/140 (5%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL+N NVN Q+ T + G EI LL +L ++ GF +++ A
Sbjct: 23 SLLQNNVNVNAQNGFGRTALQVM-KLGNPEIARRLLLRGANPDL--KDRTGFAVIHDAAR 79
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G + + L + A V + ++G PLH+A H+ +VE LV+ N+ + K
Sbjct: 80 AGFLDTLQ-TLLEFQ--ADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHK 136
Query: 242 KRTPLMAAVGQGQTSVINYL 261
T A G+ V++ +
Sbjct: 137 GDTACDLARLYGRNEVVSLM 156
Score = 84.0 bits (209), Expect = 4e-19
Identities = 29/111 (26%), Positives = 49/111 (44%), Gaps = 10/111 (9%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
LL G N +++D +HDA GF + LL +VN+ E+++G L+ A
Sbjct: 55 RLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLLEFQADVNI--EDNEGNLPLHLAAK 112
Query: 183 RGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G+++V E ++ A N + G T +A E+V L+
Sbjct: 113 EGHLRVVEFLVKHTASNVGH----RNHKGDTACDLARLYGRNEVVSLMQAN 159
Score = 67.8 bits (167), Expect = 1e-13
Identities = 26/146 (17%), Positives = 42/146 (28%), Gaps = 38/146 (26%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
+ A A+G E LL + N+
Sbjct: 2 AEPWGNELASAAARGDLEQLTSLLQN-----------NVNV------------------- 31
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
N + G T L V + EI L+ + N + D + A G
Sbjct: 32 NA------QNGFGRTALQVMKLG-NPEIARRLLLR-GANPDLKDRTGFAVIHDAARAGFL 83
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
+ L+ ++I+D +GN LH
Sbjct: 84 DTLQTLLEFQADVNIEDNEGNLPLHL 109
Score = 49.3 bits (119), Expect = 3e-07
Identities = 14/45 (31%), Positives = 18/45 (40%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
L A +G +E+L LL V + G TAL GN
Sbjct: 6 GNELASAAARGDLEQLTSLLQNNVNVNAQNGFGRTALQVMKLGNP 50
Score = 42.8 bits (102), Expect = 6e-05
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 6/61 (9%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSGA 58
+T L + G E LL RGA D G +H AA D +Q + A
Sbjct: 39 RTALQV-MKLGNPEIARRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-EF--QA 94
Query: 59 N 59
+
Sbjct: 95 D 95
Score = 42.4 bits (101), Expect = 9e-05
Identities = 14/51 (27%), Positives = 22/51 (43%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
++H A G ++ L LL A V D+ G+ LH AA ++
Sbjct: 71 FAVIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEF 121
Score = 39.3 bits (93), Expect = 0.001
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI 51
LH+ A +G + + L+ A V + + GDTA A + + + +
Sbjct: 104 NLPLHLAAKEGHLRVVEFLVKHTASNVGHRNHKGDTACDLARLYGRNEVVSL 155
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 96.1 bits (239), Expect = 1e-22
Identities = 37/158 (23%), Positives = 70/158 (44%), Gaps = 4/158 (2%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL+ G VN +D+ +P+H A + G +EI LL ++ N G L+YA +
Sbjct: 58 FLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK-GAHVNAVNQNGCTPLHYAASK 116
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
++ +L N K T +H A ++++V +L+ K + N D +
Sbjct: 117 NRHEIAVMLLEGGANPDA--KDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGN 173
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
TPL A + + +L+ + ++ I++ + L
Sbjct: 174 TPLHLACDEERVEEAKFLVTQGASIYIENKEEKTPLQV 211
Score = 95.7 bits (238), Expect = 1e-22
Identities = 48/207 (23%), Positives = 84/207 (40%), Gaps = 6/207 (2%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
+L + D + T +H A + G EI LL VN ++ G++ L+ A
Sbjct: 26 ILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVN--DKDDAGWSPLHIAASA 83
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
G ++ + +L ++ +G TPLH A + EI +L+E N +A D
Sbjct: 84 GXDEIVKALLVKGAHVNA--VNQNGCTPLHYAASKNRHEIAVMLLE-GGANPDAKDHYDA 140
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYE 303
T + A +G +++ L+ + +IQD +GN LH ++ + + IY
Sbjct: 141 TAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVTQGASIYI 200
Query: 304 EYLSVGGPSNEHGILLAVFLFLVKHGA 330
E P L + L + G
Sbjct: 201 ENKEEKTPLQVAKGGLGLILKRLAEGE 227
Score = 90.3 bits (224), Expect = 1e-20
Identities = 52/264 (19%), Positives = 96/264 (36%), Gaps = 52/264 (19%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ ++ E +LA + D TALH+A + ++ G
Sbjct: 8 IMICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL--GVP 65
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSGI 117
+N K ++ +P A +G
Sbjct: 66 ----------------------------------VNDK-----DDAGW-SPLHIAASAGX 85
Query: 118 LIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNIL 177
+L G +VN + N TP+H A +K EI ++LL N ++ +
Sbjct: 86 DEIVKALL-VKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEG-GANPDAKDHYDATAM 143
Query: 178 NYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
+ A +GN+K+ +L + + ++G TPLH+AC + +E + LV +I
Sbjct: 144 HRAAAKGNLKMVHILLFYKASTNI--QDTEGNTPLHLACDEERVEEAKFLVT-QGASIYI 200
Query: 238 LDLKKRTPLMAAVGQGQTSVINYL 261
+ +++TPL A +G +I
Sbjct: 201 ENKEEKTPLQVA--KGGLGLILKR 222
Score = 85.3 bits (211), Expect = 6e-19
Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 48/237 (20%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQ-INSHVSGAN 59
+T LH G E + LL G V DDAG + LH AA + ++ + + N
Sbjct: 41 RTALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVN 100
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
++ H + + +
Sbjct: 101 AVNQNGCTPLHYAASKNRHEIAV------------------------------------- 123
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
+LL G N + +D+ T MH A AKG ++ +LL + + + +++++G L+
Sbjct: 124 ----MLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFY-KASTNIQDTEGNTPLHL 178
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
A ++ + ++ ++ + + TPL VA + ++ + + +
Sbjct: 179 ACDEERVEEAKFLVTQGASIYI--ENKEEKTPLQVA--KGGLGLILKRLAE-GEEAS 230
Score = 84.5 bits (209), Expect = 1e-18
Identities = 43/209 (20%), Positives = 77/209 (36%), Gaps = 9/209 (4%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
I N A ++ E+ILA D T LH AC H EIVE L++
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATR--TDQDSRTALHWACSAGHTEIVEFLLQL-G 63
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTP 292
V +N D +PL A G ++ L+++ ++ + +G LH+ K
Sbjct: 64 VPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAV 123
Query: 293 ITREKSVPIYEEYLSVGGP---SNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILED 349
+ E + + G L + L+ + A ++++ PL L ++
Sbjct: 124 MLLEGGANPDAKDHYDATAMHRAAAKG-NLKMVHILLFYKASTNIQDTEGNTPLHLACDE 182
Query: 350 TSLLNEIMEHAREYVTDLTNENNKVVTAI 378
+ E + + EN + T +
Sbjct: 183 ERV--EEAKFLVTQGASIYIENKEEKTPL 209
Score = 69.5 bits (170), Expect = 2e-13
Identities = 26/186 (13%), Positives = 60/186 (32%), Gaps = 5/186 (2%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
++A E+ E ++ K D RT L A G T ++ +L+
Sbjct: 3 GCVSNIMICNLAYSGKLDELKERILAD-KSLATRTDQDSRTALHWACSAGHTEIVEFLLQ 61
Query: 264 RDVALDIQDIDGNGLLHF--LFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
V ++ +D G LH K + + V + +
Sbjct: 62 LGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEI 121
Query: 322 FLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKVVTAISQL 381
+ L++ GA +++ + +L +++ Y ++ + T +
Sbjct: 122 AVMLLEGGANPDAKDHYDATAMHRAAAKGNL--KMVHILLFYKASTNIQDTEGNTPLHLA 179
Query: 382 ALDEKL 387
+E++
Sbjct: 180 CDEERV 185
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 93.6 bits (234), Expect = 2e-22
Identities = 44/154 (28%), Positives = 62/154 (40%), Gaps = 8/154 (5%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
G N + D + +A G E L + VN + L++A + V
Sbjct: 1 GAMGN---SEADRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSV 57
Query: 189 TEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
E L + A V K G PLH AC H E+ ELLV K+ +N DL K TPL
Sbjct: 58 VE-YLLQHG--ADVHAKDKGGLVPLHNACSYGHYEVAELLV-KHGAVVNVADLWKFTPLH 113
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A +G+ + L+ ++ DGN L
Sbjct: 114 EAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDL 147
Score = 79.4 bits (197), Expect = 2e-17
Identities = 31/138 (22%), Positives = 50/138 (36%), Gaps = 38/138 (27%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL++G +V+ +D P+H+A + G E+ LL+ H G +
Sbjct: 60 YLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH-----------GAVV------- 101
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N FTPLH A EI +LL+ ++ + +
Sbjct: 102 ------------NV------ADLWKFTPLHEAAAKGKYEICKLLL-QHGADPTKKNRDGN 142
Query: 244 TPLMAAVGQGQTSVINYL 261
TPL G T + + L
Sbjct: 143 TPLDLVK-DGDTDIQDLL 159
Score = 58.9 bits (144), Expect = 2e-10
Identities = 28/107 (26%), Positives = 42/107 (39%), Gaps = 37/107 (34%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+L+++G VN+ D + TP+H+A AKG EI LLL H G +
Sbjct: 93 LLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQH-----------GADP------- 134
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
+ K DG TPL + + +I +LL
Sbjct: 135 ------------TK------KNRDGNTPLDLVK-DGDTDIQDLLRGD 162
Score = 53.2 bits (129), Expect = 2e-08
Identities = 31/170 (18%), Positives = 49/170 (28%), Gaps = 59/170 (34%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH A V + LL GA V+ D G LH A + ++ H GA
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLVKH--GAV 100
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
+ ++K TP
Sbjct: 101 VNVADLWKF----------------------------------------TPLHEAAAKGK 120
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
E +L++ G + ++ + +TP+ G +IQ LL
Sbjct: 121 YEICKLLLQH-------GADPTKKNRDGNTPLDLV-KDGDTDIQDLLRGD 162
Score = 40.8 bits (97), Expect = 3e-04
Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 4/61 (6%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
L A G VE + L + + T LH+AA N+ ++ H GA
Sbjct: 9 DRQLLEAAKAGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAGYNRVSVVEYLLQH--GA 66
Query: 59 N 59
+
Sbjct: 67 D 67
Score = 28.9 bits (66), Expect = 3.6
Identities = 5/32 (15%), Positives = 9/32 (28%), Gaps = 4/32 (12%)
Query: 30 DDAGDTALHYAAFGNKPDAIQ--INSHVSGAN 59
+ D L AA + ++ N
Sbjct: 5 NSEADRQLLEAAKAGDVETVKKLCTVQ--SVN 34
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 96.4 bits (241), Expect = 2e-22
Identities = 27/143 (18%), Positives = 61/143 (42%), Gaps = 9/143 (6%)
Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+L+RN +++ + ++ TP+ A E + L++ ++ + G + L++A
Sbjct: 108 ILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLINS-HADVNAVDDLGKSALHWAAA 166
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
N+ +L N+++ + + TPL +A E ++L++ N + D
Sbjct: 167 VNNVDAAVVLLKNGANKDM----QNNREETPLFLAAREGSYETAKVLLDH-FANRDITDH 221
Query: 241 KKRTPLMAAVGQGQTSVINYLML 263
R P A + ++ L L
Sbjct: 222 MDRLPRDIAQERMHHDIVRLLDL 244
Score = 93.3 bits (233), Expect = 2e-21
Identities = 30/157 (19%), Positives = 55/157 (35%), Gaps = 36/157 (22%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
LL + NIQDN TP+H AV+ + + +L+ + + ++
Sbjct: 76 LLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN----------RATDL-------- 117
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
+ + DG TPL +A ++E L+ ++NA+D ++
Sbjct: 118 DA-----------------RMHDGTTPLILAARLAVEGMLEDLIN-SHADVNAVDDLGKS 159
Query: 245 PLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L A L+ D+Q+ L
Sbjct: 160 ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFL 196
Score = 92.1 bits (230), Expect = 4e-21
Identities = 31/169 (18%), Positives = 58/169 (34%), Gaps = 25/169 (14%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLS---HPEVNLYLENSKGFNILN--------- 178
+VN++ + TP+ A G P V +G ++ N
Sbjct: 2 DVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAVISDFI-YQGASLHNQTDRTGETA 60
Query: 179 --YAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYK 232
A +++L N + + G TPLH A D + ++L+
Sbjct: 61 LHLAARYSRSDAAKRLLEASADANI------QDNMGRTPLHAAVSADAQGVFQILIRNRA 114
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+++A TPL+ A ++ L+ ++ D G LH+
Sbjct: 115 TDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHW 163
Score = 84.8 bits (211), Expect = 1e-18
Identities = 23/116 (19%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVL 182
L+ + +VN D+ + +H A A + ++LL + ++ +N++ L A
Sbjct: 142 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKNGANKDM--QNNREETPLFLAAR 199
Query: 183 RGNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNIN 236
G+ + + +L NR++ P +A H +IV LL + + +
Sbjct: 200 EGSYETAKVLLDHFANRDI----TDHMDRLPRDIAQERMHHDIVRLLDLE-HHHHH 250
Score = 58.2 bits (142), Expect = 1e-09
Identities = 37/175 (21%), Positives = 56/175 (32%), Gaps = 59/175 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T L + A L L+ A V DD G +ALH+AA N DA + + GAN
Sbjct: 125 TTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLLKN--GAN 182
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
+ ++ +E TP S
Sbjct: 183 KDMQNNREE----------------------------------------TPLFLAAREGS 202
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVN 165
E + +L+ N +I D+ P A + +I +LL L H +
Sbjct: 203 YETAKVLLDH-------FANRDITDHMDRLPRDIAQERMHHDIVRLLDLEHHHHH 250
Score = 45.2 bits (108), Expect = 3e-05
Identities = 15/51 (29%), Positives = 20/51 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A + LL A D+ G T LH A + QI
Sbjct: 58 ETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQI 108
Score = 42.8 bits (102), Expect = 2e-04
Identities = 12/65 (18%), Positives = 21/65 (32%), Gaps = 3/65 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T L + A +G E +LL A D A D +++ + +
Sbjct: 191 ETPLFLAAREGSYETAKVLLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDLE--HHH 248
Query: 60 RSRKH 64
H
Sbjct: 249 HHHHH 253
Score = 39.0 bits (92), Expect = 0.003
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVY-YPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
+ + ++ + +GA ++ D G+TALH AA ++ DA + A
Sbjct: 24 LETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLLEA--SA 81
Query: 59 N 59
+
Sbjct: 82 D 82
Score = 29.7 bits (68), Expect = 2.5
Identities = 8/38 (21%), Positives = 13/38 (34%)
Query: 233 VNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDI 270
+++N TPLM A G + A +
Sbjct: 1 MDVNVRGPDGFTPLMIASCSGGGLETGNSEEEEDAPAV 38
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 95.4 bits (238), Expect = 2e-22
Identities = 48/263 (18%), Positives = 92/263 (34%), Gaps = 63/263 (23%)
Query: 1 KTLLHILAYQGCVEELN-ILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGA 58
++ L + A + V+ L+ +L G V+ G+TALH AA + +A +
Sbjct: 4 ESPLLLAAKENDVQALSKLLKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEA--AP 61
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
V P E +T + I +N+ + L
Sbjct: 62 E-----------------LVFEPMTSELYEGQTAL----HIAVINQ------NVNLVRAL 94
Query: 119 IKQDFVLLRNGCNVNIQDNNQD-------------TPMHDAVAKGFEEIQLLLLSH-PEV 164
+ G +V+ + P+ A G EEI LL+ H ++
Sbjct: 95 LA-------RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADI 147
Query: 165 NLYLENSKGFNILNYAVLRGNMKVTEKILAL--------NRNLATVPKTSDGFTPLHVAC 216
++S G +L+ +L+ N ++ L + + + G TP +A
Sbjct: 148 R--AQDSLGNTVLHILILQPNKTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAG 205
Query: 217 FNDHIEIVELLVEKYKVNINALD 239
+I + + L++K + +I A
Sbjct: 206 VEGNIVMFQHLMQK-RKHIAAAH 227
Score = 88.8 bits (221), Expect = 4e-20
Identities = 41/249 (16%), Positives = 79/249 (31%), Gaps = 73/249 (29%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L GC V+ + +T +H A E ++L+ PE+ S
Sbjct: 23 LKFEGCEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELVFEPMTS------------ 70
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK- 242
+ +G T LH+A N ++ +V L+ +++A
Sbjct: 71 --------------------ELYEGQTALHIAVINQNVNLVRALLA-RGASVSARATGSV 109
Query: 243 ------------RTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYK 290
PL A G ++ L+ + QD GN +LH L ++ N
Sbjct: 110 FHYRPHNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPN--- 166
Query: 291 TPITREKSVPIYEEYLSVGGPSNEHGILLA-------------------VFLFLVKHGAP 331
+ + +Y LS G + + L +F L++
Sbjct: 167 ----KTFACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKH 222
Query: 332 LSLENNNRQ 340
++ +++
Sbjct: 223 IAAAHHHHH 231
Score = 81.1 bits (201), Expect = 2e-17
Identities = 24/183 (13%), Positives = 53/183 (28%), Gaps = 36/183 (19%)
Query: 124 VLLRNGCNV-----NIQDNNQDTPMHDAVAKGFEEIQLLLLSH------------PEVNL 166
VL+ + + T +H AV + LL+
Sbjct: 55 VLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYRP 114
Query: 167 YLENSKGFNILNYAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIE 222
+ G + L++A G+ ++ ++ + + S G T LH+ +
Sbjct: 115 HNLIYYGEHPLSFAACVGSEEIVRLLIEHGADIRA------QDSLGNTVLHILILQPNKT 168
Query: 223 IVELLVE---KYKVNINA------LDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
+ Y + + + TP A +G + +LM + +
Sbjct: 169 FACQMYNLLLSYDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQKRKHIAAAHH 228
Query: 274 DGN 276
+
Sbjct: 229 HHH 231
Score = 71.9 bits (177), Expect = 2e-14
Identities = 39/269 (14%), Positives = 69/269 (25%), Gaps = 88/269 (32%)
Query: 33 GDTALHYAAFGNKPDAIQ--INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPE 90
++ L AA N A+ + G ++ E
Sbjct: 3 WESPLLLAAKENDVQALSKLLKFE--GCEVHQRGAMGE---------------------- 38
Query: 91 TPMLNMKFIPRMNEDMLDTP--------SAECSGILIKQDFVLLRNGCNVNIQDNNQDTP 142
T + E + +L++ L+ + T
Sbjct: 39 ------------------TALHIAALYDNLEAAMVLMEAAPELVFEPMTS--ELYEGQTA 78
Query: 143 MHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV 202
+H AV + LL+ G ++ + + T + +
Sbjct: 79 LHIAVINQNVNLVRALLAR-----------GASV--------SARATGSVFHYRPH---- 115
Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ----TSVI 258
G PL A EIV LL+E + +I A D T L + Q +
Sbjct: 116 NLIYYGEHPLSFAACVGSEEIVRLLIE-HGADIRAQDSLGNTVLHILILQPNKTFACQMY 174
Query: 259 NYLMLRD------VALDIQDIDGNGLLHF 281
N L+ D + + G
Sbjct: 175 NLLLSYDGGDHLKSLELVPNNQGLTPFKL 203
Score = 68.0 bits (167), Expect = 5e-13
Identities = 21/121 (17%), Positives = 45/121 (37%), Gaps = 8/121 (6%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEK----Y 231
L A +++ K+L V + + G T LH+A D++E +L+E
Sbjct: 7 LLLAAKENDVQALSKLLKFEG--CEVHQRGAMGETALHIAALYDNLEAAMVLMEAAPELV 64
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKT 291
+ + + +T L AV +++ L+ R ++ + + +
Sbjct: 65 FEPMTSELYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVFHYR-PHNLIYYGEH 123
Query: 292 P 292
P
Sbjct: 124 P 124
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 92.5 bits (231), Expect = 5e-22
Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 12/160 (7%)
Query: 124 VLLRNG-CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAV 181
+ L N ++N D++ +P+H A +G + +L+ +N+ N L+ A
Sbjct: 23 LWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLIMRGARINV--MNRGDDTPLHLAA 80
Query: 182 LRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDL 240
G+ + +K+L A + G PLH ACF ++ E LV ++ +
Sbjct: 81 SHGHRDIVQKLLQYK---ADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-GALVSICNK 136
Query: 241 KKRTPLMAAVGQGQTSVINYLMLR--DV-ALDIQDIDGNG 277
P+ A + + ++ + +D G
Sbjct: 137 YGEMPVDKAKAPLRELLRERAEKMGQNLNRIPYKDTFWKG 176
Score = 82.5 bits (205), Expect = 2e-18
Identities = 33/266 (12%), Positives = 68/266 (25%), Gaps = 104/266 (39%)
Query: 1 KTLLHILAYQGCVEELNILLARGAC-VYYPDDAGDTALHYAAFGNKPDAIQ--INSHVSG 57
+ +G + + L + DD G + LH+A + ++ I G
Sbjct: 6 MDDIFTQCREGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACREGRSAVVEMLI-MR--G 62
Query: 58 ANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP------- 110
A +N+ N DTP
Sbjct: 63 AR----------------------------------INVM-----NRGD-DTPLHLAASH 82
Query: 111 -SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
+ L++ ++N + + + P+H A G +++ L+++
Sbjct: 83 GHRDIVQKLLQ-------YKADINAVNEHGNVPLHYACFWGQDQVAEDLVAN-------- 127
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
G + ++ G P+ A + E +
Sbjct: 128 ---GALV--------SI-----------------CNKYGEMPVDKAKAPLRELLRERAEK 159
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQT 255
N+N P +G T
Sbjct: 160 M-GQNLNR------IPYKDTFWKGTT 178
Score = 78.2 bits (194), Expect = 5e-17
Identities = 28/146 (19%), Positives = 45/146 (30%), Gaps = 36/146 (24%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL 195
+ +G L L + N LN
Sbjct: 2 SPEFMDDIFTQCREGNAVAVRLWLDN-----------TENDLNQ---------------- 34
Query: 196 NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQT 255
GF+PLH AC +VE+L+ + IN ++ TPL A G
Sbjct: 35 --------GDDHGFSPLHWACREGRSAVVEMLIMR-GARINVMNRGDDTPLHLAASHGHR 85
Query: 256 SVINYLMLRDVALDIQDIDGNGLLHF 281
++ L+ ++ + GN LH+
Sbjct: 86 DIVQKLLQYKADINAVNEHGNVPLHY 111
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 94.2 bits (235), Expect = 6e-22
Identities = 30/161 (18%), Positives = 63/161 (39%), Gaps = 12/161 (7%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
+ +G V + + D+ +G ++ ++ + +L N +G L+ AV
Sbjct: 24 RIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYEVDDPSL--PNDEGITALHNAVCA 80
Query: 184 GNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK- 241
G+ ++ + L + V SDG+TPLH A +++++ + LVE + A+
Sbjct: 81 GHTEIVK---FLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES-GAAVFAMTYSD 136
Query: 242 --KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+ +G T +L + I + L
Sbjct: 137 MQTAADKCEEMEEGYTQCSQFLYGVQEKMGIMNKGVIYALW 177
Score = 93.4 bits (233), Expect = 1e-21
Identities = 40/252 (15%), Positives = 72/252 (28%), Gaps = 48/252 (19%)
Query: 136 DNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEKILA 194
+ + + ++H V N +L + L G + ++I+
Sbjct: 2 EITGQVSLPPGKRTNLRKTGSERIAHGMRVK---FNPLPLALLLDSSLEGEFDLVQRIIY 58
Query: 195 LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ 254
+ + +G T LH A H EIV+ LV+ VN+NA D TPL A
Sbjct: 59 EVDDPSL--PNDEGITALHNAVCAGHTEIVKFLVQF-GVNVNAADSDGWTPLHCAASCNN 115
Query: 255 TSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNE 314
V +L+ A+ + T ++
Sbjct: 116 VQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQ------------------- 156
Query: 315 HGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNEIMEHAREYVTDLTNENNKV 374
FL + + N L ++ + +L +
Sbjct: 157 ---------FLYGVQEKMGIMNKGVIYAL-------------WDYEPQNDDELPMKEGDC 194
Query: 375 VTAISQLALDEK 386
+T I + DE
Sbjct: 195 MTIIHREDEDEI 206
Score = 81.1 bits (201), Expect = 2e-17
Identities = 32/298 (10%), Positives = 74/298 (24%), Gaps = 100/298 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
+ L + + +A G V + + L ++ + D +Q +
Sbjct: 6 QVSLPPGKRTNLRKTGSERIAHGMRVKF-NPLPLALLLDSSLEGEFDLVQRIIYE--VDD 62
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--SAECSG- 116
++ N++ + T +A C+G
Sbjct: 63 ----------------------------------PSLP-----NDEGI-TALHNAVCAGH 82
Query: 117 -----ILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
L++ G NVN D++ TP+H A + ++ L+
Sbjct: 83 TEIVKFLVQF-------GVNVNAADSDGWTPLHCAASCNNVQVCKFLVES---------- 125
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGF--TPLHVACFNDHIEIVELLVE 229
G + SD + + + L
Sbjct: 126 -GAAV--------FAM----------------TYSDMQTAADKCEEMEEGYTQCSQFLYG 160
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
+ + ++ L Q + M + I + + + + + N
Sbjct: 161 V-QEKMGIMNKGVIYALWDYEPQNDDEL---PMKEGDCMTIIHREDEDEIEWWWARLN 214
Score = 47.6 bits (114), Expect = 4e-06
Identities = 32/224 (14%), Positives = 52/224 (23%), Gaps = 82/224 (36%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH G E + L+ G V D G T LH AA N + GA
Sbjct: 71 ITALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES--GAA 128
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA------- 112
+ M + T +
Sbjct: 129 ---------------------------------------VFAMTYSDMQTAADKCEEMEE 149
Query: 113 ---ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
+CS L + I + + D + +E L + + +
Sbjct: 150 GYTQCSQFLYGV-------QEKMGIMNKGVIYALWDYEPQNDDE---LPMKEGDCMTIIH 199
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLH 213
R + E A + +G+ P +
Sbjct: 200 -------------REDEDEIEWWWARLND-------KEGYVPRN 223
Score = 32.6 bits (75), Expect = 0.31
Identities = 6/32 (18%), Positives = 9/32 (28%), Gaps = 3/32 (9%)
Query: 29 PDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
P+ G +L N +H G
Sbjct: 1 PEITGQVSLPPGKRTNLRKTGSERIAH--GMR 30
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 87.8 bits (219), Expect = 6e-21
Identities = 43/138 (31%), Positives = 59/138 (42%), Gaps = 37/138 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL G +VN +D N TP+H A G E+ LLL G ++
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV------- 61
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N K +G TPLH+A N H+E+V+LL+E ++NA D R
Sbjct: 62 ------------NA------KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGR 102
Query: 244 TPLMAAVGQGQTSVINYL 261
TPL A G V+ L
Sbjct: 103 TPLHLAARNGHLEVVKLL 120
Score = 71.2 bits (176), Expect = 5e-15
Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 37/141 (26%)
Query: 141 TPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLA 200
TP+H A G E+ LLL G ++ N
Sbjct: 4 TPLHLAARNGHLEVVKLLLEA-----------GADV-------------------NA--- 30
Query: 201 TVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINY 260
K +G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+
Sbjct: 31 ---KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKL 86
Query: 261 LMLRDVALDIQDIDGNGLLHF 281
L+ ++ +D +G LH
Sbjct: 87 LLEAGADVNAKDKNGRTPLHL 107
Score = 69.7 bits (172), Expect = 1e-14
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 60 DVNAKDKNGRTPLHL 74
Score = 45.0 bits (108), Expect = 6e-06
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T LH+ A G +E + +LL GA V D G T LH AA + +++ GA+
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA--GAD 60
Score = 38.5 bits (91), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A G +E + +LL GA V D G T LH AA + +++
Sbjct: 69 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 119
Score = 38.1 bits (90), Expect = 0.001
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A G +E + +LL GA V D G T LH AA + +++
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 89.5 bits (223), Expect = 8e-21
Identities = 31/152 (20%), Positives = 53/152 (34%), Gaps = 11/152 (7%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+V + +TP A K E+ LL +V+ + G L +
Sbjct: 32 PSSYIAADVV---SEYETPWWTAARKADEQALSQLLEDRDVDA--VDENGRTALLFVAGL 86
Query: 184 GNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G+ K + + + G T LH+A E+VE LVE +I D +
Sbjct: 87 GSDKCVRLLAEAGADLDHRD---MRGGLTALHMAAGYVRPEVVEALVEL-GADIEVEDER 142
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDI 273
T L A +T+ M + ++ +
Sbjct: 143 GLTALELAREILKTTPKGNPMQFGRRIGLEKV 174
Score = 86.8 bits (216), Expect = 7e-20
Identities = 22/158 (13%), Positives = 47/158 (29%), Gaps = 15/158 (9%)
Query: 128 NGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
N + G + + S+ A + + +
Sbjct: 3 NKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AAD---VVSEYETPWWTAARKADEQ 58
Query: 188 VTEKILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-KR 243
++L ++ +G T L + V LL E +++ D++
Sbjct: 59 ALSQLLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGL 111
Query: 244 TPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
T L A G + V+ L+ ++++D G L
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALEL 149
Score = 55.2 bits (134), Expect = 5e-09
Identities = 22/170 (12%), Positives = 44/170 (25%), Gaps = 58/170 (34%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T A + + L+ LL V D+ G TAL + A +++ GA+
Sbjct: 45 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GAD 101
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
L+ + + T
Sbjct: 102 ----------------------------------LDHR-----DMRGGLTALHMAAGYVR 122
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
E L++ G ++ ++D T + A + +
Sbjct: 123 PEVVEALVE-------LGADIEVEDERGLTALELAREILKTTPKGNPMQF 165
Score = 43.6 bits (104), Expect = 5e-05
Identities = 16/68 (23%), Positives = 23/68 (33%), Gaps = 3/68 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQIN-SHVSGAN 59
T LH+ A E + L+ GA + D+ G TAL A K G
Sbjct: 111 LTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF--GRR 168
Query: 60 RSRKHIYK 67
+ +
Sbjct: 169 IGLEKVIN 176
Score = 40.9 bits (97), Expect = 3e-04
Identities = 8/50 (16%), Positives = 10/50 (20%), Gaps = 3/50 (6%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
I G A V +T AA A+
Sbjct: 16 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQ 62
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 87.8 bits (219), Expect = 1e-20
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 11/144 (7%)
Query: 141 TPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEKILAL--NR 197
+ +A G ++ +L+++ + G + L+ A G+ TE +L +R
Sbjct: 4 KKLLEAARAGQDDEVRILMANGAPFT---TDWLGTSPLHLAAQYGHFSTTEVLLRAGVSR 60
Query: 198 NLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSV 257
+ +T TPLH+A H IVE+L++ ++NA D+ K T L A V
Sbjct: 61 DA----RTKVDRTPLHMAASEGHANIVEVLLKH-GADVNAKDMLKMTALHWATEHNHQEV 115
Query: 258 INYLMLRDVALDIQDIDGNGLLHF 281
+ L+ + Q
Sbjct: 116 VELLIKYGADVHTQSKFCKTAFDI 139
Score = 85.5 bits (213), Expect = 7e-20
Identities = 32/138 (23%), Positives = 52/138 (37%), Gaps = 37/138 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VLLR G + + + TP+H A ++G I +LL H G ++
Sbjct: 52 VLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLLKH-----------GADV------- 93
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N K T LH A ++H E+VELL+ KY +++ +
Sbjct: 94 -NA-----------------KDMLKMTALHWATEHNHQEVVELLI-KYGADVHTQSKFCK 134
Query: 244 TPLMAAVGQGQTSVINYL 261
T ++ G + L
Sbjct: 135 TAFDISIDNGNEDLAEIL 152
Score = 75.1 bits (186), Expect = 4e-16
Identities = 37/236 (15%), Positives = 67/236 (28%), Gaps = 95/236 (40%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
L A G +E+ IL+A GA D G + LH AA ++ G +
Sbjct: 3 GKKLLEAARAGQDDEVRILMANGAPFT-TDWLGTSPLHLAAQYGHFSTTEVLLRA--GVS 59
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
R + TP
Sbjct: 60 RDARTKVDR----------------------------------------TPLHMAASEGH 79
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
A +L+K +G +VN +D + T +H A +E+ LL+ +
Sbjct: 80 ANIVEVLLK-------HGADVNAKDMLKMTALHWATEHNHQEVVELLIKY---------- 122
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELL 227
G ++ + ++ T ++ N + ++ E+L
Sbjct: 123 -GADV-------------------HT------QSKFCKTAFDISIDNGNEDLAEIL 152
Score = 60.9 bits (149), Expect = 3e-11
Identities = 16/75 (21%), Positives = 23/75 (30%), Gaps = 2/75 (2%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
D L A + V +L+ D +PL A G S L+ V
Sbjct: 1 DLGKKLLEAARAGQDDEVRILMAN-GAPFTT-DWLGTSPLHLAAQYGHFSTTEVLLRAGV 58
Query: 267 ALDIQDIDGNGLLHF 281
+ D + LH
Sbjct: 59 SRDARTKVDRTPLHM 73
Score = 27.4 bits (62), Expect = 9.9
Identities = 7/28 (25%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
Query: 33 GDTALHYAAFGNKPDAIQI-NSHVSGAN 59
L AA + D ++I ++ GA
Sbjct: 2 LGKKLLEAARAGQDDEVRILMAN--GAP 27
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 84.8 bits (211), Expect = 1e-19
Identities = 30/138 (21%), Positives = 53/138 (38%), Gaps = 37/138 (26%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL+NG + N++D+ TP+H+A G ++ LLL H +
Sbjct: 28 YLLQNGSDPNVKDHAGWTPLHEACNHGHLKVVELLLQH-----------KALV------- 69
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N +PLH A N H++IV+LL+ + NA+++
Sbjct: 70 ------------NT------TGYQNDSPLHDAAKNGHVDIVKLLLSY-GASRNAVNIFGL 110
Query: 244 TPLMAAVGQGQTSVINYL 261
P+ + S++
Sbjct: 111 RPVDYTDDESMKSLLLLP 128
Score = 78.6 bits (195), Expect = 1e-17
Identities = 32/153 (20%), Positives = 57/153 (37%), Gaps = 38/153 (24%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
G + ++ +T +H A KG LL + G +
Sbjct: 1 GIDPF-TNHRGETLLHIASIKGDIPSVEYLLQN-----------GSDP------------ 36
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMA 248
N K G+TPLH AC + H+++VELL++ K +N + +PL
Sbjct: 37 -------NV------KDHAGWTPLHEACNHGHLKVVELLLQH-KALVNTTGYQNDSPLHD 82
Query: 249 AVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G ++ L+ + + +I G + +
Sbjct: 83 AAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDY 115
Score = 47.4 bits (114), Expect = 1e-06
Identities = 7/42 (16%), Positives = 16/42 (38%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVN 165
+LL G + N + P+ + + + LL + +
Sbjct: 94 LLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKNESSS 135
Score = 43.9 bits (105), Expect = 1e-05
Identities = 16/44 (36%), Positives = 22/44 (50%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
+TLLHI + +G + + LL G+ D AG T LH A
Sbjct: 11 ETLLHIASIKGDIPSVEYLLQNGSDPNVKDHAGWTPLHEACNHG 54
Score = 43.6 bits (104), Expect = 3e-05
Identities = 19/67 (28%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH G ++ + +LL A V D+ LH AA D +++ S+ GA+
Sbjct: 44 WTPLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY--GAS 101
Query: 60 RSRKHIY 66
R+ +I+
Sbjct: 102 RNAVNIF 108
Score = 38.9 bits (92), Expect = 8e-04
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+ LH A G V+ + +LL+ GA + G + Y + + +
Sbjct: 77 DSPLHDAAKNGHVDIVKLLLSYGASRNAVNIFGLRPVDYTDDESMKSLLLL 127
Score = 27.0 bits (61), Expect = 9.7
Identities = 5/22 (22%), Positives = 11/22 (50%)
Query: 30 DDAGDTALHYAAFGNKPDAIQI 51
+ G+T LH A+ +++
Sbjct: 7 NHRGETLLHIASIKGDIPSVEY 28
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 88.7 bits (220), Expect = 1e-19
Identities = 42/293 (14%), Positives = 75/293 (25%), Gaps = 76/293 (25%)
Query: 1 KTLLHILAYQGCVEELNILL-------ARGACVYYPDDA-GDTALHYAAFGNKPDAIQIN 52
+ + Q +EL LL R + D G T L A
Sbjct: 14 RRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDT- 72
Query: 53 SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
+ R + V + +T + I +M
Sbjct: 73 --------IALLLDVARKTDSLKQFVNASYTDSYYKGQTAL----HIAIERRNM------ 114
Query: 113 ECSGILIKQDFV--LLRNGCNVNIQDNNQ--------------DTPMHDAVAKGFEEIQL 156
V L+ NG +V N + P+ A I
Sbjct: 115 ---------TLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVK 165
Query: 157 LLLSH--PEVNLYLENSKGFNILNYAVLRGNMKVTEKILA-------------LNRNLAT 201
LL + ++ +S G +L+ V + V L+ L
Sbjct: 166 FLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKL 225
Query: 202 VP-KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG 253
G TPL +A + I ++ ++++ ++ + AA
Sbjct: 226 EEITNRKGLTPLALAASSGKIGVLAYILQR--------EIHEPECRHAAAHHH 270
Score = 86.8 bits (215), Expect = 4e-19
Identities = 41/229 (17%), Positives = 74/229 (32%), Gaps = 39/229 (17%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNL-------YLENSKGFNILNYAV 181
+ DAVA+ + LL + + + + G L A+
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 182 L---RGNMKVTEKILALNRNLATVP---------KTSDGFTPLHVACFNDHIEIVELLVE 229
L G +L + R ++ G T LH+A ++ +V LLVE
Sbjct: 63 LNLHNGQNDTIALLLDVARKTDSLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVE 122
Query: 230 KYKVNINALD--------------LKKRTPLMAAVGQGQTSVINYLM---LRDVALDIQD 272
++ A PL A Q +++ +L+ + + +D
Sbjct: 123 N-GADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARD 181
Query: 273 IDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
GN +LH L + T + +Y E L +G + L +
Sbjct: 182 SVGNTVLHALVEVAD--NTVDNTKFVTSMYNEILILGAKLHPTLKLEEI 228
Score = 44.4 bits (105), Expect = 6e-05
Identities = 30/236 (12%), Positives = 57/236 (24%), Gaps = 84/236 (35%)
Query: 2 TLLHILAYQGCVEELNILLARGACV--------------YYPDDAGDTALHYAAFGNKPD 47
T LHI + + + +L+ GA V G+ L AA N+
Sbjct: 103 TALHIAIERRNMTLVTLLVENGADVQAAANGDFFKKTKGRPGFYFGELPLSLAACTNQLA 162
Query: 48 AIQ--INSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED 105
++ + + A+ S + T + + + D
Sbjct: 163 IVKFLLQNSWQPADISARDSVG----------------------NTVLHALVEVADNTVD 200
Query: 106 MLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEV 164
++ + ILI L I + TP+ A + G + +L
Sbjct: 201 NTKFVTSMYNEILIL-GAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL------ 253
Query: 165 NLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
+ + H A + H
Sbjct: 254 ------QREIH--------------------------------EPECRHAAAHHHH 271
Score = 30.9 bits (70), Expect = 1.1
Identities = 10/46 (21%), Positives = 14/46 (30%), Gaps = 8/46 (17%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGNK 45
T L + A G + L +L R H AA +
Sbjct: 234 LTPLALAASSGKIGVLAYILQREI-------HEPECRHAAAHHHHH 272
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 86.2 bits (214), Expect = 3e-19
Identities = 27/161 (16%), Positives = 45/161 (27%), Gaps = 41/161 (25%)
Query: 125 LLRNGCNVNIQDNNQDTPM---HDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
+LR + + P+ DA G E+ + +
Sbjct: 4 VLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAVKE-----------MNDP----- 47
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
+ +G T LH A + IV+ L+ N+N+ D
Sbjct: 48 ---SQ-----------------PNEEGITALHNAICGANYSIVDFLITA-GANVNSPDSH 86
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDI-DGNGLLHF 281
TPL A T + L+ A+ + DG
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEK 127
Score = 82.3 bits (204), Expect = 6e-18
Identities = 26/160 (16%), Positives = 46/160 (28%), Gaps = 40/160 (25%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
++ + + + T +H+A+ I L++ G N+
Sbjct: 39 QAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA-----------GANV------- 80
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK- 242
N S G+TPLH A + I LV+ I A L
Sbjct: 81 ------------NS------PDSHGWTPLHCAASCNDTVICMALVQH-GAAIFATTLSDG 121
Query: 243 RTPLMAA--VGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
T +G YL + ++ + + L
Sbjct: 122 ATAFEKCDPYREGYADCATYLADVEQSMGLMNSGAVYALW 161
Score = 71.1 bits (175), Expect = 4e-14
Identities = 23/160 (14%), Positives = 44/160 (27%), Gaps = 39/160 (24%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L+ G NVN D++ TP+H A + I + L+ H G I
Sbjct: 72 FLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH-----------GAAI------- 113
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVA--CFNDHIEIVELLVEKYKVNINALDLK 241
SDG T + + L + + ++ ++
Sbjct: 114 -FAT----------------TLSDGATAFEKCDPYREGYADCATYLADV-EQSMGLMNSG 155
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
L +++ V + +D +
Sbjct: 156 AVYALWDY-SAEFGDELSFREGESVTVLRRDGPEETDWWW 194
Score = 63.4 bits (155), Expect = 2e-11
Identities = 29/226 (12%), Positives = 47/226 (20%), Gaps = 76/226 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH ++ L+ GA V PD G T LH AA N H GA
Sbjct: 55 ITALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH--GAA 112
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
+ + T D
Sbjct: 113 IFATTLS---------------------DGATAFEKCDPYREGYADCAT----------- 140
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
L ++ + ++ + D A+ +E+ + +L
Sbjct: 141 ----YLADVEQSMGLMNSGAVYALWDYSAEFGDELSFR------------EGESVTVLR- 183
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
+ T A + V
Sbjct: 184 ------------------------RDGPEETDWWWAALHGQEGYVP 205
Score = 48.4 bits (116), Expect = 2e-06
Identities = 16/60 (26%), Positives = 23/60 (38%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
LL A G +E + + P++ G TALH A G + + GAN
Sbjct: 22 LVLLLDAALTGELEVVQQAVKEMNDPSQPNEEGITALHNAICGANYSIVDFLITA--GAN 79
Score = 41.1 bits (97), Expect = 5e-04
Identities = 23/168 (13%), Positives = 40/168 (23%), Gaps = 42/168 (25%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDA-GDTALHYAAFGNKPDAIQINSHVSGAN 59
T LH A L+ GA ++ + G TA + ++++
Sbjct: 88 WTPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDP-YREGYADCATYLADVE 146
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGILI 119
+ + L + + SAE L
Sbjct: 147 ----------------QSM----GLMNSGAVYALWDY--------------SAEFGDELS 172
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI--QLLLLSHPEVN 165
V +D ++T A G E + P V
Sbjct: 173 ----FREGESVTVLRRDGPEETDWWWAALHGQEGYVPRNYFGLFPRVK 216
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 82.9 bits (206), Expect = 7e-19
Identities = 28/142 (19%), Positives = 45/142 (31%), Gaps = 18/142 (12%)
Query: 126 LRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRG 184
+ + + A A+G E LL N NS G + + G
Sbjct: 1 MEPAAGSS--MEPSADWLATAAARGRVEEVRALLEAGANPNA--PNSYGRRPIQVMM-MG 55
Query: 185 NMKVTEKILA----LNRNLATVPKTSDGFT-PLHVACFNDHIEIVELLVEKYKVNINALD 239
+ +V E +L N T P+H A ++ + +L ++ D
Sbjct: 56 SARVAELLLLHGAEPNC------ADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRD 108
Query: 240 LKKRTPLMAAVGQGQTSVINYL 261
R P+ A G V YL
Sbjct: 109 AWGRLPVDLAEELGHRDVARYL 130
Score = 79.1 bits (196), Expect = 2e-17
Identities = 24/136 (17%), Positives = 43/136 (31%), Gaps = 15/136 (11%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAVL 182
LL G N N ++ P+ G + LLL H E N + ++ A
Sbjct: 31 LLEAGANPNAPNSYGRRPIQVM-MMGSARVAELLLLHGAEPNC--ADPATLTRPVHDAAR 87
Query: 183 RGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
G + L+R A + + + G P+ +A H ++ L
Sbjct: 88 EGFLDTLV---VLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLRAA-AGGTRG---- 139
Query: 242 KRTPLMAAVGQGQTSV 257
+G + +
Sbjct: 140 -SNHARIDAAEGPSDI 154
Score = 65.6 bits (161), Expect = 9e-13
Identities = 16/72 (22%), Positives = 23/72 (31%), Gaps = 2/72 (2%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLML 263
L A +E V L+E N NA + R P+ + G V L+L
Sbjct: 8 SMEPSADWLATAAARGRVEEVRALLEA-GANPNAPNSYGRRPIQVMM-MGSARVAELLLL 65
Query: 264 RDVALDIQDIDG 275
+ D
Sbjct: 66 HGAEPNCADPAT 77
Score = 64.8 bits (159), Expect = 2e-12
Identities = 21/103 (20%), Positives = 38/103 (36%), Gaps = 9/103 (8%)
Query: 124 VLLRNGCNVNIQDNNQDT-PMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVL 182
+LL +G N D T P+HDA +GF + ++L L + ++ G ++ A
Sbjct: 62 LLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA-GARLDVRDAWGRLPVDLAEE 120
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
G+ V + A G + +I +
Sbjct: 121 LGHRDVARYLRA---AAGGT----RGSNHARIDAAEGPSDIPD 156
Score = 49.0 bits (118), Expect = 5e-07
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
L A +G VEE+ LL GA P+ G + G+
Sbjct: 14 DWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQVMMMGSA 57
Score = 42.8 bits (102), Expect = 6e-05
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+H A +G ++ L +L GA + D G + A D +
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARY 129
Score = 35.5 bits (83), Expect = 0.017
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 2/51 (3%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDT-ALHYAAFGNKPDAIQI 51
+ + G +LL GA D A T +H AA D + +
Sbjct: 47 RPIQV-MMMGSARVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Score = 30.9 bits (71), Expect = 0.72
Identities = 5/47 (10%), Positives = 13/47 (27%)
Query: 235 INALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
+ L A +G+ + L+ + + G +
Sbjct: 5 AGSSMEPSADWLATAAARGRVEEVRALLEAGANPNAPNSYGRRPIQV 51
Score = 29.4 bits (67), Expect = 1.9
Identities = 5/41 (12%), Positives = 9/41 (21%), Gaps = 5/41 (12%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
+ + + G + L A G A
Sbjct: 112 RLPVDLAEELGHRDVARYLRAAAGGTR-----GSNHARIDA 147
Score = 28.6 bits (65), Expect = 3.3
Identities = 3/22 (13%), Positives = 8/22 (36%)
Query: 30 DDAGDTALHYAAFGNKPDAIQI 51
+ L AA + + ++
Sbjct: 9 MEPSADWLATAAARGRVEEVRA 30
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 83.4 bits (207), Expect = 4e-18
Identities = 22/154 (14%), Positives = 47/154 (30%), Gaps = 17/154 (11%)
Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLRGNMKVTEK 191
+ G + +V S+ A + + + +
Sbjct: 9 SRTAGEGAMEYLIEWKDGHSPSWVPSSYIAADVV-----SEYETPWWTAARKADEQALSQ 63
Query: 192 ILA---LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK-KRTPLM 247
+L ++ +G T L + V LL E +++ D++ T L
Sbjct: 64 LLEDRDVDA------VDENGRTALLFVAGLGSDKCVRLLAEA-GADLDHRDMRGGLTALH 116
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G + V+ L+ ++++D G L
Sbjct: 117 MAAGYVRPEVVEALVELGADIEVEDERGLTALEL 150
Score = 83.0 bits (206), Expect = 5e-18
Identities = 32/262 (12%), Positives = 69/262 (26%), Gaps = 75/262 (28%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+T A + + L+ LL V D+ G TAL + A +++ GA+
Sbjct: 46 ETPWWTAARKADEQALSQLLE-DRDVDAVDENGRTALLFVAGLGSDKCVRLLAEA--GAD 102
Query: 60 RSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------S 111
L+ + + T
Sbjct: 103 ----------------------------------LDHR-----DMRGGLTALHMAAGYVR 123
Query: 112 AECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENS 171
E L++ G ++ ++D T + A + + +
Sbjct: 124 PEVVEALVE-------LGADIEVEDERGLTALELAREILKTTPKGNPMQF-GRRI---GL 172
Query: 172 KGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY 231
+ + + +V ++I+ K G ++ + D + + +
Sbjct: 173 EKVINVLEGQVFEYAEV-DEIVE---------KRGKGKDVEYLVRWKDGGDCEWVKG-VH 221
Query: 232 KVNINALDLKKRTPLMAAVGQG 253
A D L AV +
Sbjct: 222 VAEDVAKD--YEDGLEYAVAES 241
Score = 78.8 bits (195), Expect = 1e-16
Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 20/160 (12%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNILNYAVLR 183
L +V+ D N T + G ++ LL +++ G L+ A
Sbjct: 63 QLLEDRDVDAVDENGRTALLFVAGLGSDKCVRLLAEAGADLDHRDMRG-GLTALHMAAGY 121
Query: 184 GNMKVTEKILAL--NRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
+V E ++ L + + + G T L +A ++ + I +
Sbjct: 122 VRPEVVEALVELGADIEV----EDERGLTALELAREILKTTPKGNPMQ-FGRRIGL---E 173
Query: 242 KRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
K ++ V + + G + +
Sbjct: 174 KVINVLEGQVFEYAEVDEIV--------EKRGKGKDVEYL 205
Score = 44.9 bits (107), Expect = 3e-05
Identities = 32/232 (13%), Positives = 64/232 (27%), Gaps = 77/232 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPD-DAGDTALHYAAFGNKPDAIQ--INSHVSG 57
+T L +A G + + +L GA + + D G TALH AA +P+ ++ + G
Sbjct: 78 RTALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-EL--G 134
Query: 58 ANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP------- 110
A+ + ++ +E L T
Sbjct: 135 AD----------------------------------IEVE-----DERGL-TALELAREI 154
Query: 111 -SAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLE 169
G ++ G + ++ + + + E+ + +
Sbjct: 155 LKTTPKGNPMQ-------FGRRIGLEKV---INVLEGQVFEYAEV---------DEIVEK 195
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHI 221
KG ++ + + V K D L A I
Sbjct: 196 RGKGKDVEYLVRWKDGGDCEW--VKGVHVAEDVAK--DYEDGLEYAVAESVI 243
Score = 44.1 bits (105), Expect = 6e-05
Identities = 13/88 (14%), Positives = 24/88 (27%), Gaps = 19/88 (21%)
Query: 208 GFTPLHVA--------------CFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQG 253
G + + H ++ + + TP A +
Sbjct: 1 GEVNKIIGSRTAGEGAMEYLIEWKDGHSPSWVPSSYI-AADVVS---EYETPWWTAARKA 56
Query: 254 QTSVINYLMLRDVALDIQDIDGNGLLHF 281
++ L L D +D D +G L F
Sbjct: 57 DEQALSQL-LEDRDVDAVDENGRTALLF 83
Score = 41.4 bits (98), Expect = 4e-04
Identities = 8/50 (16%), Positives = 10/50 (20%), Gaps = 3/50 (6%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
I G A V +T AA A+
Sbjct: 17 MEYLIEWKDGHSPSWVPSSYIAADV---VSEYETPWWTAARKADEQALSQ 63
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 79.3 bits (197), Expect = 4e-18
Identities = 34/148 (22%), Positives = 54/148 (36%), Gaps = 37/148 (25%)
Query: 133 NIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKI 192
+ +TP+H+A G E LLS G ++
Sbjct: 3 MWGSKDGNTPLHNAAKNGHAEEVKKLLSK-----------GADV---------------- 35
Query: 193 LALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQ 252
N ++ DG TPLH+A N H EIV+LL+ K ++NA TP A
Sbjct: 36 ---NA------RSKDGNTPLHLAAKNGHAEIVKLLLAK-GADVNARSKDGNTPEHLAKKN 85
Query: 253 GQTSVINYLMLRDVALDIQDIDGNGLLH 280
G ++ L + ++ + + H
Sbjct: 86 GHHEIVKLLDAKGADVNARSWGSSHHHH 113
Score = 77.4 bits (192), Expect = 2e-17
Identities = 33/123 (26%), Positives = 47/123 (38%), Gaps = 37/123 (30%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
LL G +VN + + +TP+H A G EI LLL+ G ++
Sbjct: 27 KLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLLAK-----------GADV------- 68
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
N ++ DG TP H+A N H EIV+LL K ++NA
Sbjct: 69 ------------NA------RSKDGNTPEHLAKKNGHHEIVKLLDAK-GADVNARSWGSS 109
Query: 244 TPL 246
Sbjct: 110 HHH 112
Score = 68.2 bits (168), Expect = 3e-14
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
DG TPLH A N H E V+ L+ K ++NA TPL A G ++ L+ +
Sbjct: 8 DGNTPLHNAAKNGHAEEVKKLLSK-GADVNARSKDGNTPLHLAAKNGHAEIVKLLLAKGA 66
Query: 267 ALDIQDIDGNGLLHF 281
++ + DGN H
Sbjct: 67 DVNARSKDGNTPEHL 81
Score = 43.5 bits (104), Expect = 2e-05
Identities = 18/51 (35%), Positives = 26/51 (50%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH A G EE+ LL++GA V G+T LH AA + +++
Sbjct: 10 NTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKL 60
Score = 39.3 bits (93), Expect = 5e-04
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T LH+ A G E + +LLA+GA V G+T H A + +++ ++ GA+
Sbjct: 43 NTPLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLDAK--GAD 100
Score = 35.8 bits (84), Expect = 0.007
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHY 39
T H+ G E + +L A+GA V H+
Sbjct: 76 NTPEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHHH 114
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 79.4 bits (197), Expect = 5e-18
Identities = 26/134 (19%), Positives = 38/134 (28%), Gaps = 37/134 (27%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
+ G +VN P+H A G EI LL G +I
Sbjct: 26 YVAKGEDVNRTLEGGRKPLHYAADCGQLEILEFLLLK-----------GADI-------- 66
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT 244
N TPL A + H+ V+LL+ K + T
Sbjct: 67 -----------NA------PDKHHITPLLSAVYEGHVSCVKLLLSK-GADKTVKGPDGLT 108
Query: 245 PLMAAVGQGQTSVI 258
A Q +++
Sbjct: 109 AFEATDNQAIKALL 122
Score = 75.5 bits (187), Expect = 1e-16
Identities = 31/147 (21%), Positives = 51/147 (34%), Gaps = 39/147 (26%)
Query: 136 DNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILA 194
+ D A+ G + + + +KG ++
Sbjct: 4 GSMCDKEFMWALKNGDLDEVKDYV------------AKGEDV------------------ 33
Query: 195 LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQ 254
NR G PLH A +EI+E L+ K +INA D TPL++AV +G
Sbjct: 34 -NR------TLEGGRKPLHYAADCGQLEILEFLLLK-GADINAPDKHHITPLLSAVYEGH 85
Query: 255 TSVINYLMLRDVALDIQDIDGNGLLHF 281
S + L+ + ++ DG
Sbjct: 86 VSCVKLLLSKGADKTVKGPDGLTAFEA 112
Score = 71.7 bits (177), Expect = 3e-15
Identities = 18/79 (22%), Positives = 30/79 (37%), Gaps = 1/79 (1%)
Query: 203 PKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLM 262
P S A N ++ V+ V K ++N R PL A GQ ++ +L+
Sbjct: 2 PLGSMCDKEFMWALKNGDLDEVKDYVAK-GEDVNRTLEGGRKPLHYAADCGQLEILEFLL 60
Query: 263 LRDVALDIQDIDGNGLLHF 281
L+ ++ D L
Sbjct: 61 LKGADINAPDKHHITPLLS 79
Score = 58.2 bits (142), Expect = 1e-10
Identities = 20/103 (19%), Positives = 30/103 (29%), Gaps = 38/103 (36%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEI-QLLLLSHPEVNLYLENSKGFNILNYAVL 182
LL G ++N D + TP+ AV +G +LLL SKG +
Sbjct: 58 FLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL------------SKGADK------ 99
Query: 183 RGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVE 225
K DG T +++
Sbjct: 100 -------------TV------KGPDGLTAFEATDNQAIKALLQ 123
Score = 42.0 bits (100), Expect = 7e-05
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 3/64 (4%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
+ LH A G +E L LL +GA + PD T L A + +++ S GA+
Sbjct: 41 RKPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLLSK--GAD 98
Query: 60 RSRK 63
++ K
Sbjct: 99 KTVK 102
Score = 40.8 bits (97), Expect = 2e-04
Identities = 11/50 (22%), Positives = 21/50 (42%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
G ++E+ +A+G V + G LHYAA + + ++
Sbjct: 9 KEFMWALKNGDLDEVKDYVAKGEDVNRTLEGGRKPLHYAADCGQLEILEF 58
Score = 35.5 bits (83), Expect = 0.011
Identities = 12/44 (27%), Positives = 17/44 (38%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
T L Y+G V + +LL++GA G TA
Sbjct: 74 ITPLLSAVYEGHVSCVKLLLSKGADKTVKGPDGLTAFEATDNQA 117
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 78.9 bits (195), Expect = 4e-17
Identities = 15/126 (11%), Positives = 37/126 (29%), Gaps = 13/126 (10%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL------LLLSHPEVNLYLENSKGFNILN 178
L+ G ++ + T G +I + L ++ ++
Sbjct: 61 LINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVF 119
Query: 179 YAVLRGNMKVTEKI----LALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKYKV 233
+ + E I L +++ + K G T L ++++ + Y
Sbjct: 120 KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED-YIK 178
Query: 234 NINALD 239
N +
Sbjct: 179 KYNLKE 184
Score = 75.5 bits (186), Expect = 5e-16
Identities = 16/153 (10%), Positives = 44/153 (28%), Gaps = 20/153 (13%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQL----LLLSH-PEVNLYLENSKGFNILNY 179
L G + + ++D + +E + L++ ++ +G +
Sbjct: 25 LFEKGYEDK-ESVLKSNILYDVLRNNNDEARYKISMFLINKGADIKS--RTKEGTTLFFP 81
Query: 180 AVLRGNMKVTEKILALNRNL----ATV-PKTSDGFTPLHVACFNDHIE------IVELLV 228
G +T L + A + + FN ++ + +L+
Sbjct: 82 LFQGGGNDITGT-TELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPLYKLIF 140
Query: 229 EKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
+ + + D T L + + +
Sbjct: 141 SQSGLQLLIKDKWGLTALEFVKRCQKPIALKMM 173
Score = 72.4 bits (178), Expect = 7e-15
Identities = 23/159 (14%), Positives = 52/159 (32%), Gaps = 18/159 (11%)
Query: 138 NQDTPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSK-GFNILNYAVLRGNMKVTEKILAL 195
++ + A G +E+ L E + S +++L K++ ++
Sbjct: 5 SEYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK 64
Query: 196 NRNLATVPKTSDGFTPLHVACFNDH------IEIVELLVEKYKVNINALDLKKRTPLMAA 249
++ + +T +G T E+ ++ +EK +I AL + +
Sbjct: 65 GADIKS--RTKEGTTLFFPLFQGGGNDITGTTELCKIFLEK-GADITALYKPYKIVVFKN 121
Query: 250 VGQGQTSVINYLMLRDVAL-------DIQDIDGNGLLHF 281
+ + L + I+D G L F
Sbjct: 122 IFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 64.3 bits (157), Expect = 4e-12
Identities = 15/180 (8%), Positives = 45/180 (25%), Gaps = 32/180 (17%)
Query: 173 GFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIVELLVEKY 231
+ ++ A + G + ++ K++ + L +I L+ K
Sbjct: 6 EYRTVSAAAMLGTYEDFLELFEKGYEDKESVLKSNILYDVLRNNNDEARYKISMFLINK- 64
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVIN------YLMLRDVALDIQDIDGNGLLHFLFIK 285
+I + + T G + + + + ++
Sbjct: 65 GADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVF----- 119
Query: 286 KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDL 345
+E+ ++ L + G L +++ L+
Sbjct: 120 -------------------KNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEF 160
Score = 51.6 bits (124), Expect = 8e-08
Identities = 17/163 (10%), Positives = 39/163 (23%), Gaps = 37/163 (22%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHV-----SGA 58
L + + L+ +GA + G T G D GA
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDITGTTELCKIFLEKGA 105
Query: 59 NRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGIL 118
+ + + + + K I D + ++
Sbjct: 106 DITALYKPYK----------------------IVV--FKNIFNYFVDE--------NEMI 133
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
+ ++G + I+D T + ++ +
Sbjct: 134 PLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDY 176
Score = 43.9 bits (104), Expect = 4e-05
Identities = 11/61 (18%), Positives = 16/61 (26%), Gaps = 6/61 (9%)
Query: 1 KTLLHILAYQG------CVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSH 54
TL L G E I L +GA + + F D ++
Sbjct: 76 TTLFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135
Query: 55 V 55
Sbjct: 136 Y 136
Score = 40.4 bits (95), Expect = 5e-04
Identities = 13/58 (22%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 1 KTLLHILAYQGCVEELN-------ILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
K ++ + V+E I G + D G TAL + KP A+++
Sbjct: 115 KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKM 172
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 80.6 bits (199), Expect = 4e-17
Identities = 23/160 (14%), Positives = 55/160 (34%), Gaps = 35/160 (21%)
Query: 125 LLRNGCNVNIQDNNQD-------------TPMHDAVAKGFEEIQLLLLSHPEV--NLYLE 169
L+ NG +V+++ + P+ A ++ LL +P +L
Sbjct: 109 LVENGADVHLRACGRFFQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEAT 168
Query: 170 NSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
+S G +L+ V+ S + L + ++ +++ L
Sbjct: 169 DSLGNTVLHALVMIA-------------------DNSPENSALVIHMYDGLLQMGARLCP 209
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALD 269
+ + TPL A +G+ + +++ R+ +
Sbjct: 210 T-VQLEEISNHQGLTPLKLAAKEGKIEIFRHILQREFSGA 248
Score = 79.8 bits (197), Expect = 7e-17
Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 64/238 (26%)
Query: 127 RNGCNVNIQDNNQDTPMHDAVA---KGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+ + + T + AV G + LL + + + +
Sbjct: 31 YLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTD----- 85
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKK- 242
+ G + LH+A ++ V+LLVE +++ +
Sbjct: 86 --------------------EFYQGHSALHIAIEKRSLQCVKLLVEN-GADVHLRACGRF 124
Query: 243 ------------RTPLMAAVGQGQTSVINYLM---LRDVALDIQDIDGNGLLHFLFI--K 285
PL A Q V+ YL+ + +L+ D GN +LH L +
Sbjct: 125 FQKHQGTCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIAD 184
Query: 286 KNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPL 343
+ + + +Y+ L +G L + N+ PL
Sbjct: 185 NSPENSALVIH----MYDGLLQMGA-------------RLCPTVQLEEISNHQGLTPL 225
Score = 72.1 bits (177), Expect = 3e-14
Identities = 41/250 (16%), Positives = 71/250 (28%), Gaps = 70/250 (28%)
Query: 1 KTLLHILA---YQGCVEELNILLARGACVYYP-----------DDAGDTALHYAAFGNKP 46
KT L G + LL P G +ALH A
Sbjct: 44 KTCLMKAVLNLQDGVNACIMPLLQIDKDSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSL 103
Query: 47 DAIQI-NSHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNED 105
+++ + GA+ H Q+ E P+
Sbjct: 104 QCVKLLVEN--GAD---------VHLRACGRFFQKHQGTCFYFGELPLS----------- 141
Query: 106 MLDTPSAECSGILIKQDFV--LLRNG---CNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS 160
A C+ + D V LL N ++ D+ +T +H V
Sbjct: 142 -----LAACTK---QWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIA---------- 183
Query: 161 HPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDH 220
+NS + L + G +++ ++ + G TPL +A
Sbjct: 184 --------DNSPENSALVIHMYDGLLQMGARLCPTVQLEEI--SNHQGLTPLKLAAKEGK 233
Query: 221 IEIVELLVEK 230
IEI ++++
Sbjct: 234 IEIFRHILQR 243
Score = 66.4 bits (162), Expect = 3e-12
Identities = 21/180 (11%), Positives = 49/180 (27%), Gaps = 41/180 (22%)
Query: 120 KQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNY 179
+ + +H A+ K + LL+ + G ++
Sbjct: 71 DSGNPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVEN-----------GADV--- 116
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINA 237
+++ + ++ G PL +A ++V L+E ++ A
Sbjct: 117 -----HLRACGRFFQKHQGTCFY----FGELPLSLAACTKQWDVVTYLLENPHQPASLEA 167
Query: 238 LD----------------LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
D + + L+ + G + L +I + G L
Sbjct: 168 TDSLGNTVLHALVMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKL 227
Score = 32.5 bits (74), Expect = 0.35
Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 8/53 (15%)
Query: 1 KTLLHILAYQGCVEELNILLA--------RGACVYYPDDAGDTALHYAAFGNK 45
+ L + +G EEL LL Y G T L A +
Sbjct: 3 RDRLFSVVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKAVLNLQ 55
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 80.6 bits (199), Expect = 4e-17
Identities = 40/275 (14%), Positives = 79/275 (28%), Gaps = 65/275 (23%)
Query: 1 KTLLHILAYQGCVEELN----ILLARGACV----YYPDDAGDTALHYAAFGNKPDAIQIN 52
+ +L + +G + L LL + + G T L A
Sbjct: 6 RPILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDT- 64
Query: 53 SHVSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSA 112
+ E + P +T + I R +
Sbjct: 65 --------IPILLDIAEKTGNMREFINSPFRDVYYRGQTAL--HIAIERRCKHY-----V 109
Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQ--------------DTPMHDAVAKGFEEIQLLL 158
E +L+ G +V+ Q + + P+ A I L
Sbjct: 110 E----------LLVEKGADVHAQARGRFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYL 159
Query: 159 LSHP--EVNLYLENSKGFNILNYAVLRG-NMKVTEKIL-----ALNRNLATVPKTS---- 206
+ + +L ++S+G +L+ V N + K + L A + +
Sbjct: 160 TENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEA 219
Query: 207 ----DGFTPLHVACFNDHIEIVELLVEKYKVNINA 237
DG +PL +A I I + ++ + ++ A
Sbjct: 220 LLNNDGLSPLMMAAKTGKIGIFQHIIRR-EIADAA 253
Score = 76.7 bits (189), Expect = 8e-16
Identities = 47/217 (21%), Positives = 73/217 (33%), Gaps = 39/217 (17%)
Query: 141 TPMHDAVAKG----FEEIQLLLLSH-PEVN--LYLENSKGFNILNYAVL---RGNMKVTE 190
+ D V++G E + LL+H + + E S G L A+L G
Sbjct: 7 PILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIP 66
Query: 191 KILALNRNLATVP---------KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLK 241
+L + + G T LH+A VELLVEK +++A
Sbjct: 67 ILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEK-GADVHAQARG 125
Query: 242 K--------------RTPLMAAVGQGQTSVINYLM---LRDVALDIQDIDGNGLLHFLFI 284
+ PL A Q +++YL + L QD GN +LH L
Sbjct: 126 RFFQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVA 185
Query: 285 KKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAV 321
+ T + +Y+ L L A+
Sbjct: 186 IAD--NTRENTKFVTKMYDLLLIKCAKLFPDTNLEAL 220
Score = 72.9 bits (179), Expect = 2e-14
Identities = 22/166 (13%), Positives = 46/166 (27%), Gaps = 26/166 (15%)
Query: 131 NVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE 190
T +H A+ + + LL+ G ++ + +
Sbjct: 85 PFRDVYYRGQTALHIAIERRCKHYVELLVEK-----------GADV--------HAQARG 125
Query: 191 KILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK--YKVNINALDLKKRTPLMA 248
+ G PL +A + IV L E + ++ D + T L A
Sbjct: 126 RFFQPKDE---GGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHA 182
Query: 249 AVGQGQTSVINYLMLRDVALDI--QDIDGNGLLHFLFIKKNFYKTP 292
V + N + + + + + + N +P
Sbjct: 183 LVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP 228
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 77.1 bits (191), Expect = 5e-17
Identities = 26/154 (16%), Positives = 42/154 (27%), Gaps = 39/154 (25%)
Query: 129 GCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKV 188
+++ + D + A A+G E LL G +
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQLLEA-----------GADP------------ 38
Query: 189 TEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRT-PLM 247
N G P+ V ++ ELL+ N D T P+
Sbjct: 39 -------NA------LNRFGRRPIQVMMMG-SAQVAELLLLH-GAEPNCADPATLTRPVH 83
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A +G + L LD+ D G +
Sbjct: 84 DAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDL 117
Score = 75.9 bits (188), Expect = 1e-16
Identities = 21/112 (18%), Positives = 36/112 (32%), Gaps = 15/112 (13%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH-PEVNLYLENSKGFNI-LNYAVL 182
LL G + N + P+ G ++ LLL H E N + ++ A
Sbjct: 31 LLEAGADPNALNRFGRRPIQVM-MMGSAQVAELLLLHGAEPNC--ADPATLTRPVHDAAR 87
Query: 183 RGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
G + + L+ + G P+ +A H +I L
Sbjct: 88 EGFLDTLVVLHRAGARLDV------CDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 49.0 bits (118), Expect = 3e-07
Identities = 11/44 (25%), Positives = 16/44 (36%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK 45
L A +G VE + LL GA + G + G+
Sbjct: 14 AGLATAAARGQVETVRQLLEAGADPNALNRFGRRPIQVMMMGSA 57
Score = 44.0 bits (105), Expect = 2e-05
Identities = 10/38 (26%), Positives = 17/38 (44%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
VL R G +++ D P+ A +G +I L +
Sbjct: 96 VLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARYLHAA 133
Score = 42.4 bits (101), Expect = 5e-05
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 4 LHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+H A +G ++ L +L GA + D G + A D +
Sbjct: 82 VHDAAREGFLDTLVVLHRAGARLDVCDAWGRLPVDLAEEQGHRDIARY 129
Score = 34.0 bits (79), Expect = 0.048
Identities = 12/52 (23%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDT-ALHYAAFGNKPDAIQI 51
+ + + G + +LL GA D A T +H AA D + +
Sbjct: 46 RRPIQV-MMMGSAQVAELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVV 96
Score = 28.2 bits (64), Expect = 3.9
Identities = 4/29 (13%), Positives = 11/29 (37%)
Query: 23 GACVYYPDDAGDTALHYAAFGNKPDAIQI 51
++ + D L AA + + ++
Sbjct: 2 SPGIHMLGGSSDAGLATAAARGQVETVRQ 30
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 79.3 bits (195), Expect = 3e-16
Identities = 32/267 (11%), Positives = 73/267 (27%), Gaps = 57/267 (21%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYP-DDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
H+ E + + P D+ G+T LH+ + ++ H G+N
Sbjct: 99 QQQHVSFDSLLQEVNDAFPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH--GSN 156
Query: 60 RSRKHIYKER--HRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTPSAECSGI 117
R E + V + +
Sbjct: 157 RLYGDNMGESCLVKAVKSVNNYDSGTFEAL------------------------------ 186
Query: 118 LIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKG------------FEEIQLLLLSHPEVN 165
L + ++D+ T +H + + + ++
Sbjct: 187 -------LDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRP 239
Query: 166 LYLENSKGFNILNYAVLRGNMKVTEKILALNRNLATV-PKTSDGFTPLHVACFNDHIEIV 224
+ ++ + N + E + + + S+G T L++A +I IV
Sbjct: 240 IQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIV 299
Query: 225 ELLVEKYKVNINALDLKKRTPLMAAVG 251
+ L++ Y + + P+ G
Sbjct: 300 DALLD-YGADPFIANKSGLRPVDFGAG 325
Score = 75.8 bits (186), Expect = 4e-15
Identities = 42/242 (17%), Positives = 81/242 (33%), Gaps = 50/242 (20%)
Query: 125 LLRNGCNVNIQ-DNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
N+NI D + +TP+H + E+ L+ H N ++ G + L AV
Sbjct: 116 FPNTQLNLNIPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNRLYGDNMGESCLVKAVKS 174
Query: 184 GNMKVTEKILALNRNLATVP--KTSDGFTPLHVACFNDHIE------------IVELLVE 229
N + AL L + S T LH + ++ +V+
Sbjct: 175 VNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVK 234
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSV---INYLMLRDVALDIQDIDGNGLLHFLFIKK 286
K I + +K + G+ + S+ ++ + L+ QD +G+ L+
Sbjct: 235 KQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNI----- 289
Query: 287 NFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLI 346
R ++ I + L+ +GA + N + +P+D
Sbjct: 290 ------AARLGNISIVD--------------------ALLDYGADPFIANKSGLRPVDFG 323
Query: 347 LE 348
Sbjct: 324 AG 325
Score = 67.7 bits (165), Expect = 2e-12
Identities = 33/176 (18%), Positives = 56/176 (31%), Gaps = 12/176 (6%)
Query: 119 IKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILN 178
+K L N N Q + + + +E+ L + N E
Sbjct: 43 LKIMKALPSPVVNDNEQKMKLEAFLQRLLFPEIQEMPTSLNND-SSNRNSEGGSSNQQQQ 101
Query: 179 YAVLRGNMKVTEKIL---ALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
+ ++ LN N +P G TPLH ++E+V+ LV+ N
Sbjct: 102 HVSFDSLLQEVNDAFPNTQLNLN---IPVDEHGNTPLHWLTSIANLELVKHLVKH-GSNR 157
Query: 236 NALDLKKRTPLMAAVGQG----QTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKN 287
D + L+ AV + L L ++D +LH + I
Sbjct: 158 LYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSG 213
Score = 66.2 bits (161), Expect = 7e-12
Identities = 32/204 (15%), Positives = 65/204 (31%), Gaps = 34/204 (16%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA-FGNKPD-----------A 48
T LH L +E + L+ G+ Y D+ G++ L A N D
Sbjct: 132 NTPLHWLTSIANLELVKHLVKHGSNRLYGDNMGESCLVKAVKSVNNYDSGTFEALLDYLY 191
Query: 49 IQINS---------H--VSGANRSRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMK 97
+ H + + + + + + + + N P
Sbjct: 192 PCLILEDSMNRTILHHIIITSGMTGCSAAAKYYLDILMGWIVKKQNRPIQSGTNE----- 246
Query: 98 FIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
E + + E +++ + +N QD+N DT ++ A G I
Sbjct: 247 -----KESKPNDKNGERKDSILENLDLKWIIANMLNAQDSNGDTCLNIAARLGNISIVDA 301
Query: 158 LLSHPEVNLYLENSKGFNILNYAV 181
LL + + ++ N G +++
Sbjct: 302 LLDY-GADPFIANKSGLRPVDFGA 324
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 72.8 bits (180), Expect = 2e-15
Identities = 30/154 (19%), Positives = 58/154 (37%), Gaps = 38/154 (24%)
Query: 129 GCNVNI-QDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMK 187
G + + ++ + +A G ++ +L+++ G ++ N
Sbjct: 3 GSHHHHHHGSDLGKKLLEAARAGQDDEVRILMAN-----------GADV--------NA- 42
Query: 188 VTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLM 247
K G TPL++A + H+EIVE+L++ ++NA+D TPL
Sbjct: 43 ----------------KDEYGLTPLYLATAHGHLEIVEVLLKN-GADVNAVDAIGFTPLH 85
Query: 248 AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHF 281
A G + L+ ++ QD G
Sbjct: 86 LAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDI 119
Score = 65.1 bits (160), Expect = 8e-13
Identities = 25/106 (23%), Positives = 39/106 (36%), Gaps = 36/106 (33%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
VLL+NG +VN D TP+H A G EI +LL H G ++
Sbjct: 65 VLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH-----------GADV------- 106
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
N + G T ++ N + ++ E+L +
Sbjct: 107 -NAQ-----------------DKFGKTAFDISIGNGNEDLAEILQK 134
Score = 59.3 bits (145), Expect = 6e-11
Identities = 31/169 (18%), Positives = 53/169 (31%), Gaps = 58/169 (34%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGANR 60
L A G +E+ IL+A GA V D+ G T L+ A + +++ + GA+
Sbjct: 16 KKLLEAARAGQDDEVRILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLLKN--GADV 73
Query: 61 SRKHIYKERHRTVTTEKVQRPSNLPKVEPETPMLNMKFIPRMNEDMLDTP--------SA 112
+ TP
Sbjct: 74 NAVDAIGF----------------------------------------TPLHLAAFIGHL 93
Query: 113 ECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSH 161
E + +L+K +G +VN QD T ++ G E++ +L
Sbjct: 94 EIAEVLLK-------HGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
Score = 42.8 bits (102), Expect = 5e-05
Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI-NSHVSGAN 59
T L++ G +E + +LL GA V D G T LH AAF + ++ H GA+
Sbjct: 48 LTPLYLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLLKH--GAD 105
Score = 42.0 bits (100), Expect = 7e-05
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A+ G +E +LL GA V D G TA + D +I
Sbjct: 81 FTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEI 131
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase
complex, ring zinc-finger, UBL conjugation pathway;
2.10A {Homo sapiens} PDB: 2yhn_A
Length = 79
Score = 70.6 bits (173), Expect = 2e-15
Identities = 19/63 (30%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
Query: 463 ERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHG-TCDVCAKTLKFCHMCRKLIEQR 520
++ L+ K+ +++E C +C E N+ F CGH C+ CA L+ C +CR +E
Sbjct: 3 QQTRVLQEKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHV 62
Query: 521 INI 523
++
Sbjct: 63 QHV 65
Score = 50.1 bits (120), Expect = 3e-08
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
C VC E N PC H V CE C+++++ C +C++ +E
Sbjct: 21 CMVCCE-EEINSTFCPCGHTVCCESCAAQLQSCPVCRSRVEHVQ 63
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 77.7 bits (191), Expect = 2e-15
Identities = 28/162 (17%), Positives = 56/162 (34%), Gaps = 8/162 (4%)
Query: 130 CNVNIQDNNQDTPMHDAVAKG----FEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGN 185
+ + + + A G + + LLL S V + ++ + A G+
Sbjct: 83 SDAHKKGIKSEVICFVAAITGCSSALDTLCLLLTSDEIVKV--IQAENYQAFRLAAENGH 140
Query: 186 MKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKY-KVNINALDLKKRT 244
+ V ++ L ++ + +A N H+ ++ L E + +
Sbjct: 141 LHVLNRLCELAPTEIMAMIQAENYHAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYY 200
Query: 245 PLM-AAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIK 285
AAVG+G +VIN+L+ V L +I
Sbjct: 201 AFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242
Score = 60.0 bits (145), Expect = 1e-09
Identities = 22/155 (14%), Positives = 40/155 (25%), Gaps = 22/155 (14%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLS------------HPEVNLYLENSK 172
LL + + ++ V L ++ E +
Sbjct: 218 LLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQ 277
Query: 173 GFNILNYAVLRGNMKVTEKILALN-----RNLATVPKTS-DGFTPLHVACFNDHIEIVEL 226
GF +L + R + + + I L + LA D L +A + L
Sbjct: 278 GFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGACAL 337
Query: 227 LVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
L+ V L K G+ +
Sbjct: 338 LLSIPSVL----ALTKANNYYINETGGRLDLRAVA 368
Score = 42.6 bits (100), Expect = 3e-04
Identities = 34/219 (15%), Positives = 58/219 (26%), Gaps = 37/219 (16%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPD--DAGDTALHYAAFGN-KPDAIQ-INSHVSG 57
+ A G + LN L A +AA G + I +
Sbjct: 165 HAFRLAAENGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVM 224
Query: 58 ANRSRKHIYKERHRTVTTEKVQRPSNLPK----------------VEPETPMLNMKF--- 98
+ H ++ + V + + L + V +
Sbjct: 225 LAYAEIHEFEYGEKYVNPFIARHVNRLKEMHDAFKLSNPDGVFDLVTKSECLQGFYMLRN 284
Query: 99 -IPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLL 157
I R +E +LD S IK + + + A+ G + L
Sbjct: 285 LIRRNDEVLLDDIRFLLSIPGIK-------ALAPTATIPGDANELLRLALRLGNQGACAL 337
Query: 158 LLSHPEVNLYLENSKGFNILNYAVLRGNMKVTEKILALN 196
LLS P V + N G + + +AL
Sbjct: 338 LLSIPSVLALTKA----NNYYINETGGRLDLRA--VALE 370
Score = 34.5 bits (79), Expect = 0.092
Identities = 10/44 (22%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 1 KTLLHILAYQGC---VEELNILLARGACVYYPDDAGDTALHYAA 41
+ + + A GC ++ L +LL V A AA
Sbjct: 93 EVICFVAAITGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAA 136
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 70.3 bits (173), Expect = 5e-15
Identities = 25/138 (18%), Positives = 52/138 (37%), Gaps = 40/138 (28%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
L+ G ++ ++ + +A G ++ +L+++ G ++
Sbjct: 12 GLVPRGSHMG---SDLGKKLLEAARAGQDDEVRILMAN-----------GADV------- 50
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKR 243
K +G TPLH+A N H+E+V+LL+E ++ A D +
Sbjct: 51 ------------AA------KDKNGSTPLHLAARNGHLEVVKLLLEA-GADVXAQDKFGK 91
Query: 244 TPLMAAVGQGQTSVINYL 261
T ++ G + L
Sbjct: 92 TAFDISIDNGNEDLAEIL 109
Score = 48.3 bits (116), Expect = 3e-07
Identities = 13/67 (19%), Positives = 24/67 (35%), Gaps = 4/67 (5%)
Query: 215 ACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDID 274
+ H LV + ++ + L+ A GQ + LM + +D +
Sbjct: 1 GSSHHHHHHSSGLVPR-GSHMGS---DLGKKLLEAARAGQDDEVRILMANGADVAAKDKN 56
Query: 275 GNGLLHF 281
G+ LH
Sbjct: 57 GSTPLHL 63
Score = 42.6 bits (101), Expect = 3e-05
Identities = 17/44 (38%), Positives = 20/44 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGN 44
L A G +E+ IL+A GA V D G T LH AA
Sbjct: 25 GKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNG 68
Score = 37.6 bits (88), Expect = 0.001
Identities = 17/51 (33%), Positives = 23/51 (45%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ A G +E + +LL GA V D G TA + D +I
Sbjct: 58 STPLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 33.3 bits (77), Expect = 0.050
Identities = 8/44 (18%), Positives = 16/44 (36%), Gaps = 3/44 (6%)
Query: 8 AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+ + L+ RG+ + L AA + D ++I
Sbjct: 2 SSHHHHHHSSGLVPRGSHM---GSDLGKKLLEAARAGQDDEVRI 42
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian,
zinc-binding domain, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 75
Score = 69.4 bits (170), Expect = 5e-15
Identities = 21/70 (30%), Positives = 37/70 (52%), Gaps = 5/70 (7%)
Query: 462 IERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQ 519
+++ E ++ ++E C ICM+R +F+ CGH TC CA+ + C MC +I
Sbjct: 9 LQKEISTEEQLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITF 68
Query: 520 RINISRAFVS 529
+ + F+S
Sbjct: 69 KQ---KIFMS 75
Score = 51.3 bits (123), Expect = 1e-08
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
C +C + ++ PC H V C++C+ + KC MC T I +
Sbjct: 27 LCKICMD-RNIAIVFVPCGHLVTCKQCAEAVDKCPMCYTVITFKQ 70
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 68.9 bits (170), Expect = 1e-14
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 1/75 (1%)
Query: 207 DGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDV 266
+G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+ L+
Sbjct: 1 NGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLLLEAGA 59
Query: 267 ALDIQDIDGNGLLHF 281
++ +D +G LH
Sbjct: 60 DVNAKDKNGRTPLHL 74
Score = 67.0 bits (165), Expect = 5e-14
Identities = 32/107 (29%), Positives = 45/107 (42%), Gaps = 36/107 (33%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLR 183
+LL G +VN +D N TP+H A G E+ LLL G ++
Sbjct: 20 LLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLLEA-----------GADV------- 61
Query: 184 GNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEK 230
N K +G TPLH+A N H+E+V+LL+E
Sbjct: 62 ------------NA------KDKNGRTPLHLAARNGHLEVVKLLLEA 90
Score = 65.8 bits (162), Expect = 1e-13
Identities = 25/58 (43%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 204 KTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYL 261
K +G TPLH+A N H+E+V+LL+E ++NA D RTPL A G V+ L
Sbjct: 31 KDKNGRTPLHLAARNGHLEVVKLLLEA-GADVNAKDKNGRTPLHLAARNGHLEVVKLL 87
Score = 42.0 bits (100), Expect = 4e-05
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A G +E + +LL GA V D G T LH AA + +++
Sbjct: 3 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 53
Score = 38.1 bits (90), Expect = 8e-04
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+T LH+ A G +E + +LL GA V D G T LH AA + +++
Sbjct: 36 RTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKL 86
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1,
ring domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 68
Score = 59.4 bits (144), Expect = 1e-11
Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Query: 473 SEIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINI 523
E C +C N + L C H CD C K + C MCR+ +++ +
Sbjct: 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESFAL 62
Score = 52.1 bits (125), Expect = 5e-09
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
+C VC G N +L PC H C+ C ++C MC+ F++
Sbjct: 17 DCVVCQN-GTVNWVLLPCRHTCLCDGCVKYFQQCPMCRQFVQESF 60
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA,
apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase,
IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB:
1qbh_A 2l9m_A 3eb5_A 3eb6_A
Length = 345
Score = 60.4 bits (144), Expect = 6e-10
Identities = 20/58 (34%), Positives = 35/58 (60%), Gaps = 5/58 (8%)
Query: 474 EIEEMNTCTICMERCRNTIFL-CGH-GTCDVCAKTLKFCHMCRKLIEQRINISRAFVS 529
++E TC +CM++ + +F+ CGH C CA +L+ C +CR +I+ + R F+S
Sbjct: 291 RLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV---RTFLS 345
Score = 53.8 bits (127), Expect = 8e-08
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 401 CAVCSELGVANVLLKPCNHAVACEECSSRMKKCIMCKTFIEMRV 444
C VC + +V+ PC H V C+EC+ ++KC +C+ I+ V
Sbjct: 298 CKVCMD-KEVSVVFIPCGHLVVCQECAPSLRKCPICRGIIKGTV 340
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 58.7 bits (141), Expect = 5e-09
Identities = 72/426 (16%), Positives = 116/426 (27%), Gaps = 143/426 (33%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNK-------PDAIQINS 53
+ LL Y+ C L +L + + + AF Q+
Sbjct: 235 RRLLKSKPYENC---LLVL----------LNVQNAK-AWNAFNLSCKILLTTRFK-QVTD 279
Query: 54 HVSGANRSRKHIYKERHRTVTTE--------KV--QRPSNLPKVEPET-PMLNMKFIPRM 102
+S A HI + H T K RP +LP+ T P + I
Sbjct: 280 FLSAATT--THISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR-LSIIAES 336
Query: 103 NEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHP 162
D L T N + N D + + ++ P
Sbjct: 337 IRDGLATWD---------------------NWKHVNCDK-LTTIIESSLNVLE------P 368
Query: 163 EVNLYLENSKGFNILNYAVLRGNMKVTEKILAL------------------NRNLATVPK 204
E K F+ L +V + + +L+L +L V K
Sbjct: 369 A-----EYRKMFDRL--SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSL--VEK 419
Query: 205 TSDGFT-PLHVACFNDHIEIVEL------LVEKYKVNINALDLKKRTPL----------- 246
T + +++ +V+ Y + D P
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNI-PKTFDSDDLIPPYLDQYFYSHIG 478
Query: 247 --MAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVP---- 300
+ + + + R V LD FL K T S+
Sbjct: 479 HHLKNIEHPE----RMTLFRMVFLD---------FRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 301 ---IYEEYLSVGGPSNEHGILLAVFLFLVKHGAPLSLENNNRQKPLDLILEDTSLLNE-- 355
Y+ Y+ P E ++ A+ FL K EN K DL+ +L+ E
Sbjct: 526 QLKFYKPYICDNDPKYE-RLVNAILDFLPKIE-----ENLICSKYTDLL--RIALMAEDE 577
Query: 356 -IMEHA 360
I E A
Sbjct: 578 AIFEEA 583
Score = 55.6 bits (133), Expect = 4e-08
Identities = 92/584 (15%), Positives = 183/584 (31%), Gaps = 156/584 (26%)
Query: 5 HILAYQGCVEE----LNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQINSHVSGANR 60
HI+ + V LL++ + + L + + + S + R
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSKQEEMVQ--KFVEEVL-------RINYKFLMSPIKTEQR 103
Query: 61 SRKHIYK----ERHRTVTTEKVQRPSNLPKVEPET----------P--------ML---- 94
+ + +R R +V N+ +++P P +L
Sbjct: 104 QPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGK 163
Query: 95 ---------NMKFIPRMNEDML-------DTPSAECSGILIKQDFVLLRNGCNVNIQ-DN 137
+ K +M+ + ++P +L +L + N + D+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET----VLEMLQKLLYQIDPNWTSRSDH 219
Query: 138 NQDTPMHDAVAKGFEEIQLLLLSHPEVN--LYLEN------SKGFN----ILNYAVLRGN 185
+ + + + E++ LL S P N L L N FN IL +
Sbjct: 220 SSNIKLRIHSIQ--AELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKIL---LTTRF 274
Query: 186 MKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTP 245
+VT+ + A ++ S TP E+ LL KY ++ DL +
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLTPD---------EVKSLL-LKY-LDCRPQDLPR--- 320
Query: 246 LMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKK-NFYKTPITREKSVPIYEE 304
+ N L +A I+D GL + K N K E S+
Sbjct: 321 --------EVLTTNPRRLSIIAESIRD----GLATWDNWKHVNCDKLTTIIESSL----N 364
Query: 305 YLSVGGPSN--EHGILLAVFLFLVKHGAP---LSL--ENNNRQKPLDLI--LEDTSLLNE 355
L P+ + L+VF P LSL + + + ++ L SL+ +
Sbjct: 365 VLE---PAEYRKMFDRLSVFPPSAH--IPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 356 IMEHAREYVTDLTNENNKVVTAISQLALDEKLLARRSSCQNVPVECAVCSELGVANVLLK 415
+ + + + E ++ AL ++ + + ++ L+
Sbjct: 420 QPKESTISIPSIYLELKV--KLENEYALHRSIVDHYNIPKTFD-----------SDDLIP 466
Query: 416 PCN----------HAVACE--ECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCDKSKIE 463
P H E E + + + F+E ++ D + ++
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSI-LNTLQ 525
Query: 464 RVNYLESKISEIEEMNTCTICMERCRNTI--FLCGHGTCDVCAK 505
++ + + I + + ER N I FL +C+K
Sbjct: 526 QLKFYKPYICDNDPKY------ERLVNAILDFLPKIEENLICSK 563
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 55.4 bits (133), Expect = 1e-08
Identities = 23/88 (26%), Positives = 35/88 (39%), Gaps = 2/88 (2%)
Query: 177 LNYAVLRGNMKVTEKILALNRNLATVPK-TSDGFTPLHVACFNDHIEIVELLVEKYKVNI 235
L+ AV + + L +N + K T G T LH C D+ E ++LL+ + K +I
Sbjct: 173 LHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLL-RGKASI 231
Query: 236 NALDLKKRTPLMAAVGQGQTSVINYLML 263
+ TPL A L
Sbjct: 232 EIANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 50.8 bits (121), Expect = 6e-07
Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 4/89 (4%)
Query: 195 LNRNLATVPKTSDGFTPLHVACF---NDHIEIVELLVEKYKVNINALDLKKRTPLMAAVG 251
L + T LH+A + IV+ LV+ N++ K T L
Sbjct: 156 LTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLVQ-NSGNLDKQTGKGSTALHYCCL 214
Query: 252 QGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+ L+ +++I + G L
Sbjct: 215 TDNAECLKLLLRGKASIEIANESGETPLD 243
Score = 41.5 bits (97), Expect = 5e-04
Identities = 20/105 (19%), Positives = 28/105 (26%), Gaps = 36/105 (34%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
L++N N++ Q T +H E LLL +I
Sbjct: 191 LVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG-----------KASIE------- 232
Query: 185 NMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVE 229
G TPL +A H ELL +
Sbjct: 233 ------------------IANESGETPLDIAKRLKHEHCEELLTQ 259
Score = 37.7 bits (87), Expect = 0.009
Identities = 10/53 (18%), Positives = 22/53 (41%), Gaps = 3/53 (5%)
Query: 2 TLLHIL---AYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T LH+ + + ++ L+ + G TALHY + + +++
Sbjct: 171 TALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKL 223
Score = 37.3 bits (86), Expect = 0.011
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
+LLR ++ I + + +TP+ A E + LL
Sbjct: 223 LLLRGKASIEIANESGETPLDIAKRLKHEHCEELLT 258
Score = 36.5 bits (84), Expect = 0.017
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAA 41
T LH E L +LL A + +++G+T L A
Sbjct: 207 TALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative
splicing, HOST-virus interaction, UBL conjugation
pathway, zinc-finger, polymorphism; HET: FLC; 2.20A
{Homo sapiens} PDB: 2vjf_B*
Length = 63
Score = 49.1 bits (117), Expect = 5e-08
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 11/62 (17%)
Query: 476 EEMNTCTICMERCRNTIFL---CGHG-TCDVCAKTLKF----CHMCRKLIEQRINISRAF 527
+ C++C +R R+ + GH TC CA+ LK C +C+K I+ I + F
Sbjct: 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI---KVF 61
Query: 528 VS 529
++
Sbjct: 62 IA 63
Score = 41.0 bits (96), Expect = 4e-05
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
Query: 393 SCQNVPVECAVCSELGV-ANVLLKPCNHAVACEECSSRMKK----CIMCKTFIEMRV 444
CQN+ C++C + N++ H V C C+ R+KK C +CK I++ +
Sbjct: 2 DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVI 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation,
alternative splicing, HOST-virus interaction, UBL
conjugation pathway, zinc-finger, polymorphism; HET:
FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Length = 64
Score = 48.7 bits (116), Expect = 6e-08
Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 8/58 (13%)
Query: 474 EIEEMNTCTICMERCRNTIFL---CGHG-TCDVCAKTLKF----CHMCRKLIEQRINI 523
+ + C IC R +N + GH C CAK LK C +CR+ I+ +
Sbjct: 4 PLNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61
Score = 36.3 bits (84), Expect = 0.002
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 400 ECAVCSELGVANVLL-KPCNHAVACEECSSRMKK----CIMCKTFIEMRV 444
C +C ++ H +AC C+ ++KK C +C+ I+M V
Sbjct: 10 PCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 51.8 bits (124), Expect = 5e-07
Identities = 16/110 (14%), Positives = 37/110 (33%), Gaps = 8/110 (7%)
Query: 177 LNYAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDH---IEIVELLVE 229
L A+ ++ + A + L + LH+A + + +V+ ++
Sbjct: 136 LWTAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFII- 194
Query: 230 KYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLL 279
+ +++A T L A Q + L+ + + G L
Sbjct: 195 QNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETAL 244
Score = 39.5 bits (92), Expect = 0.003
Identities = 13/66 (19%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 125 LLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRG 184
+++NG +++ + + +T +H A + LLL + N G L+ A +
Sbjct: 193 IIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG-RALVGTVNEAGETALDIARKKH 251
Query: 185 NMKVTE 190
+ + E
Sbjct: 252 HKECEE 257
Score = 38.7 bits (90), Expect = 0.006
Identities = 16/53 (30%), Positives = 30/53 (56%), Gaps = 3/53 (5%)
Query: 2 TLLHI---LAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+LH+ +A Q + ++ ++ G + G+TALHYAA N+PD +++
Sbjct: 173 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 225
Score = 28.3 bits (63), Expect = 8.6
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLL 158
+LL+ V + +T + A K +E + LL
Sbjct: 225 LLLKGRALVGTVNEAGETALDIARKKHHKECEELL 259
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 50.8 bits (121), Expect = 6e-07
Identities = 15/109 (13%), Positives = 36/109 (33%), Gaps = 8/109 (7%)
Query: 179 YAVLRGNMKVTEKILA----LNRNLATVPKTSDGFTPLHVACFNDH---IEIVELLVEKY 231
A+ ++ + A + L + LH+A + + +V+ +++
Sbjct: 157 TAICNRDLLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQ-N 215
Query: 232 KVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGNGLLH 280
+++A T L A Q + L+ + + G L
Sbjct: 216 GGHLDAKAADGNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALD 264
Score = 46.1 bits (109), Expect = 2e-05
Identities = 22/121 (18%), Positives = 37/121 (30%), Gaps = 14/121 (11%)
Query: 119 IKQDFVLLRNGCNVNIQDNNQD------TPMHDAVAKG----FEEIQLLLLSHPEVNLYL 168
+ NG + D +H AV + ++ + ++
Sbjct: 164 LLSVLEAFANGQDFGQPLPGPDAQAPEELVLHLAVKVANQASLPLVDFIIQNGGHLDA-- 221
Query: 169 ENSKGFNILNYAVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLV 228
+ + G L+YA L + L L G T L +A H E ELL
Sbjct: 222 KAADGNTALHYAALYNQPDCLK--LLLKGRALVGTVNEAGETALDIARKKHHKECEELLE 279
Query: 229 E 229
+
Sbjct: 280 Q 280
Score = 38.4 bits (89), Expect = 0.005
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Query: 2 TLLHILAYQGCVEELNI---LLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
+LH+ L + ++ G + G+TALHYAA N+PD +++
Sbjct: 192 LVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKL 244
Score = 34.2 bits (78), Expect = 0.10
Identities = 15/40 (37%), Positives = 20/40 (50%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYA 40
T LH A + L +LL A V ++AG+TAL A
Sbjct: 227 NTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIA 266
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 47.1 bits (111), Expect = 1e-05
Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 1/97 (1%)
Query: 180 AVLRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
+ ++ LA ++ V D TPL A + + E L++ N+N D
Sbjct: 207 SGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQ-NGANVNQAD 265
Query: 240 LKKRTPLMAAVGQGQTSVINYLMLRDVALDIQDIDGN 276
R PL A G T + + R L +D +G
Sbjct: 266 SAGRGPLHHATILGHTGLACLFLKRGADLGARDSEGR 302
Score = 41.7 bits (97), Expect = 5e-04
Identities = 31/118 (26%), Positives = 48/118 (40%), Gaps = 7/118 (5%)
Query: 125 LLRNGCNVNIQDNNQD--TPMHDAVAKG-FEEIQLLLLSHPEVNLYLENSKGFNILNYAV 181
L +G +VN + QD TP+ A A + LL + VN +S G L++A
Sbjct: 219 ALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQA--DSAGRGPLHHAT 276
Query: 182 LRGNMKVTEKILALNRNLATVPKTSDGFTPLHVACFNDHIEIVELLVEKYKVNINALD 239
+ G+ + L +L S+G PL +A + +IV LL A
Sbjct: 277 ILGHTGLACLFLKRGADLGARD--SEGRDPLTIAMETANADIVTLLRLAKMREAEAAQ 332
Score = 39.8 bits (92), Expect = 0.002
Identities = 28/188 (14%), Positives = 49/188 (26%), Gaps = 38/188 (20%)
Query: 213 HVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAAVGQGQTSVINYLMLRDVALDIQD 272
+ + L VN TPL+ A +L+ ++ D
Sbjct: 206 ASGHPPSLPTMADALAHGADVNWVNGGQDNATPLIQATAANSLLACEFLLQNGANVNQAD 265
Query: 273 IDGNGLLHFLFIKKNFYKTPITREKSVPIYEEYLSVGGPSNEHGILLAVFLFLVKHGAPL 332
G G LH I + + +K GA L
Sbjct: 266 SAGRGPLHHATILGH-------------------------------TGLACLFLKRGADL 294
Query: 333 SLENNNRQKPLDLILEDTS-------LLNEIMEHAREYVTDLTNENNKVVTAISQLALDE 385
++ + PL + +E + L ++ E + S +A D+
Sbjct: 295 GARDSEGRDPLTIAMETANADIVTLLRLAKMREAEAAQGQAGDETYLDIFRDFSLMASDD 354
Query: 386 KLLARRSS 393
R S
Sbjct: 355 PEKLSRRS 362
Score = 35.1 bits (80), Expect = 0.054
Identities = 13/51 (25%), Positives = 16/51 (31%)
Query: 1 KTLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
T L + LL GA V D AG LH+A +
Sbjct: 236 ATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACL 286
Score = 32.8 bits (74), Expect = 0.30
Identities = 8/36 (22%), Positives = 17/36 (47%)
Query: 124 VLLRNGCNVNIQDNNQDTPMHDAVAKGFEEIQLLLL 159
+ L+ G ++ +D+ P+ A+ +I LL
Sbjct: 286 LFLKRGADLGARDSEGRDPLTIAMETANADIVTLLR 321
Score = 32.1 bits (72), Expect = 0.59
Identities = 12/50 (24%), Positives = 16/50 (32%)
Query: 2 TLLHILAYQGCVEELNILLARGACVYYPDDAGDTALHYAAFGNKPDAIQI 51
LH G + L RGA + D G L A D + +
Sbjct: 270 GPLHHATILGHTGLACLFLKRGADLGARDSEGRDPLTIAMETANADIVTL 319
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA
repair, ring finger domain, metal binding, DNA
replication; 1.75A {Homo sapiens}
Length = 124
Score = 38.4 bits (89), Expect = 0.001
Identities = 14/59 (23%), Positives = 21/59 (35%), Gaps = 6/59 (10%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-----AKTLKFCHMCRKLIEQR 520
+ +S++EE C C E I C H C C + C CR + +
Sbjct: 42 FQLFLSKVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRS 100
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin
ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB:
2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A
2ldr_A*
Length = 389
Score = 39.7 bits (92), Expect = 0.003
Identities = 15/63 (23%), Positives = 20/63 (31%), Gaps = 6/63 (9%)
Query: 468 LESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQRI 521
E C IC E ++ CGH C C + + C CR I+
Sbjct: 322 YELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE 381
Query: 522 NIS 524
I
Sbjct: 382 PIV 384
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 35.6 bits (82), Expect = 0.003
Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)
Query: 470 SKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL----KFCHMCRKLI 517
+ + C IC++ C + + L C H C +C K K C +CR+ I
Sbjct: 7 GNTAPSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEI 59
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 72
Score = 35.5 bits (82), Expect = 0.004
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 469 ESKISEIEEMNTCTICMERCRN--TIFLCGHGTCDVC----AKTLKFCHMCRKLIEQ 519
+SE+ C+IC + TI C H C C C C ++ Q
Sbjct: 6 SGNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQ 62
Score = 28.2 bits (63), Expect = 1.7
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 5/46 (10%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSR----MKKCIMCKTFIE 441
C++C + + C H C+ C R +C C +
Sbjct: 17 LCSICKGYLIDATTITECLHTF-CKSCIVRHFYYSNRCPKCNIVVH 61
>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase,
protein binding complex; 4.80A {Homo sapiens}
Length = 149
Score = 37.3 bits (86), Expect = 0.004
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 5/71 (7%)
Query: 455 ERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC----AKTLKF 509
E +K + ++ L +E C IC E + L C H C C K
Sbjct: 41 EEKEKMQAQKEEVLSHMNDVLENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIE 100
Query: 510 CHMCRKLIEQR 520
C +CRK I+ +
Sbjct: 101 CPICRKDIKSK 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 39.3 bits (91), Expect = 0.005
Identities = 45/256 (17%), Positives = 78/256 (30%), Gaps = 103/256 (40%)
Query: 88 EPETPMLNM---------KFIPRMNEDMLDTPSAECSGILIKQDFVLLRNGCNVNIQDNN 138
P +PML++ ++ + N + P+ KQ + L NG
Sbjct: 334 VP-SPMLSISNLTQEQVQDYVNKTNSHL---PAG-------KQVEISLVNG--------- 373
Query: 139 QDTPMHDAVAKGFEEIQLLLLSHPEVNLYLENSKGFNILNYAVLRGNMKVTE-----KIL 193
+ V+ G P+ +LY G N+ LR K +I
Sbjct: 374 ---AKNLVVS-G----------PPQ-SLY-----GLNLT----LR-KAKAPSGLDQSRIP 408
Query: 194 ALNRNLATVPKTSDGF----TPLHVACFNDHIEIVELLVEKYKVNINALDLKKRTPLMAA 249
R K S+ F +P H +++ + K V+ NA D++ P
Sbjct: 409 FSERK----LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ--IP---- 458
Query: 250 VGQGQTSVINYLMLRDVALDIQDIDGNGLLHFLFIKKNFYKTPITREKSVPIY-EEYLSV 308
V + D D++ + G+ + + I R P+ E
Sbjct: 459 -------VYD---TFD-GSDLRVLSGS-ISERIV-------DCIIRL---PVKWETTTQF 496
Query: 309 G-------GPSNEHGI 317
GP G+
Sbjct: 497 KATHILDFGPGGASGL 512
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS),
leukemia, transcription regulation; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 56
Score = 34.6 bits (80), Expect = 0.005
Identities = 10/44 (22%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 474 EIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTLKF-CHMCRK 515
E + C C + L C H C C + C +C+
Sbjct: 2 EEFQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEASGMQCPICQA 45
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid
herpesvirus 1} SCOP: g.44.1.1
Length = 68
Score = 34.3 bits (79), Expect = 0.011
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 472 ISEIEEMNTCTICMERCRNTIFL--CGHGTCDVC----AKTLKFCHMCRKLIE 518
++ + E C IC+E N C H C VC + C +C+ +E
Sbjct: 1 MATVAE--RCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51
Score = 27.8 bits (62), Expect = 1.7
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 5/46 (10%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEEC----SSRMKKCIMCKTFIE 441
C +C E + PC HA C C + C +CK +E
Sbjct: 7 RCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVE 51
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional
control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Length = 78
Score = 33.5 bits (76), Expect = 0.024
Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 10/54 (18%)
Query: 476 EEMNTCTICMERCRNT-----IFLCGHGTCDVCAKTLK-----FCHMCRKLIEQ 519
E+ C +CME CG+ C C ++ C CRK +
Sbjct: 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE 62
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 33.1 bits (76), Expect = 0.027
Identities = 12/52 (23%), Positives = 21/52 (40%), Gaps = 4/52 (7%)
Query: 471 KISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKT-LKF---CHMCRKLIE 518
++ ++ + C ICM+ + I C H C C C +CR +
Sbjct: 8 RVKQLTDEEECCICMDGRADLILPCAHSFCQKCIDKWSDRHRNCPICRLQMT 59
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 73
Score = 33.1 bits (76), Expect = 0.030
Identities = 11/59 (18%), Positives = 26/59 (44%), Gaps = 8/59 (13%)
Query: 470 SKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-------AKTLKFCHMCRKLIEQR 520
+++++E C IC++ + + + CGH C C + C +C+ + +
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; HET: MSE; 2.29A {Homo
sapiens}
Length = 100
Score = 33.3 bits (76), Expect = 0.047
Identities = 16/59 (27%), Positives = 23/59 (38%), Gaps = 7/59 (11%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL--CGHGTCDVC-----AKTLKFCHMCRKLIEQR 520
E + I E+ C ICME+ R+ C C C + C CR ++ R
Sbjct: 13 EQSVESIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
Score = 26.8 bits (59), Expect = 9.0
Identities = 10/50 (20%), Positives = 20/50 (40%), Gaps = 6/50 (12%)
Query: 399 VECAVCSELGVANVLLKPCNHAVACEEC-----SSRMKKCIMCKTFIEMR 443
C +C E L C+ + C C + + +C C+ +++R
Sbjct: 23 FRCFICMEKLRDARLCPHCSK-LCCFSCIRRWLTEQRAQCPHCRAPLQLR 71
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 66
Score = 32.1 bits (73), Expect = 0.058
Identities = 12/55 (21%), Positives = 20/55 (36%), Gaps = 6/55 (10%)
Query: 472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQR 520
+ +E+ C C + CGH C+ C L C C++ I +
Sbjct: 9 VKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63
>1z6u_A NP95-like ring finger protein isoform B; structural genomics
consortium, ligase, ubiquitin-protein ligase, cell cycle
regulation, SGC; 2.10A {Homo sapiens}
Length = 150
Score = 33.8 bits (77), Expect = 0.059
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 472 ISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-----AKTLKFCHMCRKLIEQR 520
+ ++E+ C C E + C H C C + C CR + Q
Sbjct: 72 LKKLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex,
chimera; 2.21A {Rattus norvegicus}
Length = 133
Score = 33.2 bits (75), Expect = 0.073
Identities = 28/136 (20%), Positives = 39/136 (28%), Gaps = 31/136 (22%)
Query: 399 VECAVCSEL------GVANVLLKPCNHAVACEEC----SSRMKKCIMCKTFIEMRVTTDG 448
V C +C + ++ C H V C +C C C+ I +
Sbjct: 8 VSCPICMDGYSEIVQNGRLIVSTECGH-VFCSQCLRDSLKNANTCPTCRKKINHKRYHPI 66
Query: 449 RMVPGIERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVC----A 504
+ G C SEI + + E CGH C C
Sbjct: 67 YIGSGTVSCPI--------CMDGYSEIVQNGRLIVSTE--------CGHVFCSQCLRDSL 110
Query: 505 KTLKFCHMCRKLIEQR 520
K C CRK I +
Sbjct: 111 KNANTCPTCRKKINHK 126
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 69
Score = 31.8 bits (72), Expect = 0.085
Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 12/53 (22%)
Query: 480 TCTICME--------RCRNTIFLCGHGTCDVCA----KTLKFCHMCRKLIEQR 520
+C ICM+ CGH C C K C CRK I +
Sbjct: 17 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA
damage, chromatin regulator, chromosomal protein, DNA
repair, metal-binding; 2.12A {Homo sapiens}
Length = 115
Score = 32.6 bits (74), Expect = 0.090
Identities = 18/75 (24%), Positives = 26/75 (34%), Gaps = 10/75 (13%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-----AKTLKFCHMCRKLIEQRIN 522
+ I + E C ICME + L C H C C K C CR+ + +
Sbjct: 7 KDAIPSLSEC-QCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS---S 62
Query: 523 ISRAFVSPDQNGNTT 537
+R + N
Sbjct: 63 WTRYHTRRNSLVNVE 77
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase,
nuclear protein, chromosomal protein, transcription
regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Length = 165
Score = 33.4 bits (76), Expect = 0.11
Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 7/60 (11%)
Query: 471 KISEIEEMNTCTICMERCRN--TIFLCGHGTCDVC-----AKTLKFCHMCRKLIEQRINI 523
+ C IC++ +N T C H C C K C CRK + + ++
Sbjct: 47 SPRSLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSL 106
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 31.1 bits (70), Expect = 0.14
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 7/60 (11%)
Query: 391 RSSCQNVPVECAVCSELGVANVLLKPCNHAVACEEC------SSRMKKCIMCKTFIEMRV 444
R + + C +C L + + C + C S+ +C C + +
Sbjct: 8 RETYPDAVKICNICHSLLIQGQSCETCGIRM-HLPCVAKYFQSNAEPRCPHCNDYWPHEI 66
Score = 28.0 bits (62), Expect = 2.1
Identities = 10/65 (15%), Positives = 14/65 (21%), Gaps = 16/65 (24%)
Query: 469 ESKISEIEEMNTCTICME------RCRNTIFLCGHGTCDVCAKTL------KFCHMCRKL 516
+ + + + C IC C CG C C C
Sbjct: 6 SGRETYPDAVKICNICHSLLIQGQSCET----CGIRMHLPCVAKYFQSNAEPRCPHCNDY 61
Query: 517 IEQRI 521
I
Sbjct: 62 WPHEI 66
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb,
E3-ligase, nuclear protein, chromosomal protein,
transcription regulation; 2.0A {Mus musculus} PDB:
3rpg_B 2h0d_A
Length = 108
Score = 31.7 bits (72), Expect = 0.20
Identities = 15/56 (26%), Positives = 24/56 (42%), Gaps = 6/56 (10%)
Query: 471 KISEIEEMNTCTICMERCRN--TIFLCGHGTCDVC----AKTLKFCHMCRKLIEQR 520
KI+E+ C +C + TI C H C C +T K+C +C + +
Sbjct: 8 KITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT 63
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding,
translesion synthesis, UB conjugation pathway; 1.80A
{Homo sapiens}
Length = 99
Score = 31.3 bits (71), Expect = 0.25
Identities = 12/57 (21%), Positives = 21/57 (36%), Gaps = 6/57 (10%)
Query: 470 SKISEIEEMNTCTICMERCRN--TIFLCGHGTCDVCAKT----LKFCHMCRKLIEQR 520
+ + I+++ C IC E I C H C +C + C C + +
Sbjct: 14 AVMKTIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP 70
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 112
Score = 31.2 bits (71), Expect = 0.26
Identities = 16/66 (24%), Positives = 30/66 (45%), Gaps = 8/66 (12%)
Query: 463 ERVNYLESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-------AKTLKFCHMCR 514
RV +++ I+ ++++ C IC+E + + C H C C K C +C+
Sbjct: 6 LRVEEVQNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCK 65
Query: 515 KLIEQR 520
I +R
Sbjct: 66 NDITKR 71
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 31.9 bits (72), Expect = 0.35
Identities = 10/64 (15%), Positives = 20/64 (31%), Gaps = 14/64 (21%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCRKLIEQRINIS---- 524
+ + + TC C + G DV C +C ++ ++ +
Sbjct: 12 GRRGPNLNIVLTCPECKVYPPKIVERFSEG--DV------VCALCGLVLSDKL-VDTRSE 62
Query: 525 -RAF 527
R F
Sbjct: 63 WRTF 66
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT-
interacting protein, ring domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 88
Score = 30.4 bits (69), Expect = 0.35
Identities = 16/62 (25%), Positives = 21/62 (33%), Gaps = 12/62 (19%)
Query: 469 ESKISEIEEMNTCTICMER----CRNTIFL-CGHGTCDVCAKTLK-------FCHMCRKL 516
+ + E+ C ICME L CGH C C + L C C K+
Sbjct: 6 SGNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKI 65
Query: 517 IE 518
Sbjct: 66 TR 67
>2ecw_A Tripartite motif-containing protein 30; metal binding protein,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 85
Score = 29.7 bits (67), Expect = 0.70
Identities = 15/63 (23%), Positives = 21/63 (33%), Gaps = 11/63 (17%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC----------AKTLKFCHMCRKLI 517
S + I+E TC IC+E + + C H C C C +CR
Sbjct: 10 SSVLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPY 69
Query: 518 EQR 520
Sbjct: 70 PFG 72
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase,
ubiquitylation, sumoylation, zinc-FI metal binding
protein; 1.80A {Rattus norvegicus}
Length = 71
Score = 29.0 bits (65), Expect = 0.88
Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 12/53 (22%)
Query: 480 TCTICMERCRNTIFL--------CGHGTCDVCAKTL----KFCHMCRKLIEQR 520
+C ICM+ + CGH C C + C CRK I +
Sbjct: 12 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha,
coiled coil, cytoplasm, metal- binding, UBL conjugation,
UBL conjugation pathway; 2.20A {Homo sapiens}
Length = 170
Score = 30.4 bits (68), Expect = 1.1
Identities = 18/126 (14%), Positives = 38/126 (30%), Gaps = 27/126 (21%)
Query: 400 ECAVCSELGVANVLLKPCNHAVACEECSSRM-----KKCIMCKTFIEMRVTTDGRMVPGI 454
EC +C + + PC H C+ C + KC +
Sbjct: 20 ECPICLMA-LREAVQTPCGH-RFCKACIIKSIRDAGHKCPVDN----------------- 60
Query: 455 ERCDKSKIERVNYLESKISEIEEMNTCTICMERCRNTIFLCGHGTCDVCAKTLKFCHMCR 514
E ++++ N+ + +I + C+ + C L C C+
Sbjct: 61 EILLENQLFPDNFAKREILSLMVKCPNEGCLHKME---LRHLEDHQAHCEFALMDCPQCQ 117
Query: 515 KLIEQR 520
+ ++
Sbjct: 118 RPFQKF 123
Score = 29.3 bits (65), Expect = 2.5
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 6/54 (11%)
Query: 473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVCAKTL-----KFCHMCRKLIEQR 520
+E C IC+ R + CGH C C C + +++ +
Sbjct: 13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4),
metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 65
Score = 28.0 bits (62), Expect = 1.8
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 11/49 (22%)
Query: 480 TCTICME------RCRNTIFLCGHGTCDVCAKTL-----KFCHMCRKLI 517
C C + + +CGH C+ C L C C +
Sbjct: 5 GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53
>2ecv_A Tripartite motif-containing protein 5; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 85
Score = 28.4 bits (64), Expect = 1.9
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 11/63 (17%)
Query: 469 ESKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC----------AKTLKFCHMCRKLI 517
+ ++E TC IC+E + L CGH C C K C +CR
Sbjct: 10 SGILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISY 69
Query: 518 EQR 520
+
Sbjct: 70 QPE 72
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 2.0
Identities = 6/30 (20%), Positives = 10/30 (33%), Gaps = 14/30 (46%)
Query: 26 VYYPDDAGDTALHYAAFGNKPDAIQINSHV 55
+Y D A P A+ I + +
Sbjct: 31 LYADDSA-------------P-ALAIKATM 46
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing,
mRNA splicing; NMR {Homo sapiens}
Length = 92
Score = 28.2 bits (63), Expect = 2.4
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 468 LESKISEIEEMNTCTICMERCRN--TIFLCGHGTCDVC------AKTLKFCHMCRKLIEQ 519
L S+ I + C IC + + I CG+ CD C C C +
Sbjct: 3 LGSEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 62
Query: 520 R 520
Sbjct: 63 P 63
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding;
HET: SUC; 1.50A {Homo sapiens}
Length = 64
Score = 27.4 bits (61), Expect = 2.6
Identities = 15/53 (28%), Positives = 19/53 (35%), Gaps = 12/53 (22%)
Query: 480 TCTICMERCRNTIFL--------CGHGTCDVC----AKTLKFCHMCRKLIEQR 520
+C ICM+ + CGH C C K C CRK I +
Sbjct: 5 SCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB,
RAB27B, effector, SLP homology domain, acetylation,
lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Length = 153
Score = 28.4 bits (62), Expect = 4.2
Identities = 13/80 (16%), Positives = 23/80 (28%), Gaps = 13/80 (16%)
Query: 455 ERCDKSKIERVNYLESKISEIEE--MNTCTICME------RCRNTIFLCGHGTCDVCAKT 506
+ K KI++ + +S+ C C++ R C C C+
Sbjct: 43 LQGLKGKIQKESSKRELLSDTAHLNETHCARCLQPYRLLLNSRRQCLECSLFVCKSCSHA 102
Query: 507 LK-----FCHMCRKLIEQRI 521
C C +I
Sbjct: 103 HPEEQGWLCDPCHLARVVKI 122
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger,
zinc-binding protein, heterodimer, ubiquitin ligase,
antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Length = 117
Score = 27.9 bits (62), Expect = 4.3
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 3/42 (7%)
Query: 399 VECAVCSELGVANVLLKPCNHAVACEECSSRM--KKCIMCKT 438
+ C+ C+ + V L C H + C C S C +C T
Sbjct: 23 LRCSRCTNILREPVCLGGCEH-IFCSNCVSDCIGTGCPVCYT 63
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite
motif protein 34, interferon- responsive finger protein
1; NMR {Homo sapiens}
Length = 79
Score = 27.2 bits (61), Expect = 4.4
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 12/60 (20%)
Query: 473 SEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-----------AKTLKFCHMCRKLIEQR 520
++E TC IC+E + L CGH C C C +C
Sbjct: 7 GNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE 66
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4,
UIP4, structural genomics, riken structural
genomics/proteomics initiative, RSGI; NMR {Homo sapiens}
SCOP: g.44.1.1
Length = 94
Score = 27.1 bits (60), Expect = 5.1
Identities = 8/35 (22%), Positives = 12/35 (34%), Gaps = 4/35 (11%)
Query: 476 EEMNTCTICMERCRN----TIFLCGHGTCDVCAKT 506
+ C +C+ TI C C +C K
Sbjct: 3 SGSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQ 37
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative
splicing, apoptosis, cytoplasm, metal-binding, UBL
conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Length = 141
Score = 27.8 bits (61), Expect = 6.4
Identities = 13/58 (22%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 473 SEIEEMNTCTICMERCRNTI-FLCGHGTCDVCAKTL-----KFCHMCRKLIEQRINIS 524
+++E C+ C R CGH C C ++ + C C IS
Sbjct: 26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGIS 83
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 28.4 bits (62), Expect = 7.9
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 5/43 (11%)
Query: 416 PCNHAVACEECSSRMKKCIMCKTFIEMRVTTDGRMVPGIERCD 458
C A +C++C C C ++ RC
Sbjct: 25 SCQPAPSCQKCILSHPSCAWC-----KQLNFTASGEAEARRCA 62
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger
domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 63
Score = 25.8 bits (57), Expect = 9.5
Identities = 11/52 (21%), Positives = 23/52 (44%), Gaps = 8/52 (15%)
Query: 470 SKISEIEEMNTCTICMERCRNTIFL-CGHGTCDVC-------AKTLKFCHMC 513
+++++E C IC++ + + + CGH C C + C +C
Sbjct: 12 QFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.44.1.3
Length = 93
Score = 26.7 bits (58), Expect = 9.7
Identities = 16/65 (24%), Positives = 24/65 (36%), Gaps = 14/65 (21%)
Query: 481 CTICMERCRNTIF-----LCGHGTCDVCAK---------TLKFCHMCRKLIEQRINISRA 526
CTIC ER +T F + H C C++ +C K N+ A
Sbjct: 18 CTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWA 77
Query: 527 FVSPD 531
F+ +
Sbjct: 78 FMQGE 82
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.401
Gapped
Lambda K H
0.267 0.0544 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,544,425
Number of extensions: 584801
Number of successful extensions: 2709
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1935
Number of HSP's successfully gapped: 671
Length of query: 644
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 544
Effective length of database: 3,909,693
Effective search space: 2126872992
Effective search space used: 2126872992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 60 (27.3 bits)