Query psy2735
Match_columns 475
No_of_seqs 278 out of 1338
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 23:52:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2735.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2735hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qe7_A Uracil permease; uracil 99.6 5.6E-14 1.9E-18 147.1 27.7 288 77-415 13-360 (429)
2 3qe7_A Uracil permease; uracil 87.2 12 0.0004 38.5 15.3 121 81-209 227-360 (429)
3 1bts_A BAND 3 anion transport 28.1 33 0.0011 20.9 1.9 19 110-128 6-24 (26)
4 2ksf_A Sensor protein KDPD; me 11.9 4.8E+02 0.016 20.9 6.2 38 93-132 38-75 (107)
5 1wa7_B TIP, hypothetical 28.7 8.3 1.6E+02 0.0055 17.7 1.4 12 316-327 2-13 (26)
6 2xq2_A Sodium/glucose cotransp 7.6 1.1E+03 0.037 24.5 8.7 36 96-131 151-186 (593)
7 2y69_J Cytochrome C oxidase po 7.6 2.3E+02 0.008 21.9 2.4 25 406-430 38-62 (80)
8 2l8s_A Integrin alpha-1; trans 7.0 3.4E+02 0.012 19.4 2.9 26 153-178 10-38 (54)
9 2knc_A Integrin alpha-IIB; tra 7.0 3.5E+02 0.012 19.3 3.0 27 152-178 12-41 (54)
10 1v54_J Cytochrome C oxidase po 6.7 6.3E+02 0.021 18.2 4.3 25 406-430 17-41 (59)
No 1
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=99.64 E-value=5.6e-14 Score=147.05 Aligned_cols=288 Identities=12% Similarity=0.100 Sum_probs=193.4
Q ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHhCCChhhhhhhHHHHhHHHhhcCCCCccc-cchh-HHHHHHHHHHHhccChHHH
Q psy2735 77 DGIGDLVAGITVGLTVILQAIAYSNIAGLEPQYGLYGSFVGAIIYIFVGTCKDVP-MGPT-AMVSLVTYQAVKGYGPQFA 154 (475)
Q Consensus 77 ~l~~DliAGitvg~v~IPq~mAyA~lAglpp~~GLyss~~~~liyalfGtS~~is-vGp~-a~~slmv~~~v~~~~~~~a 154 (475)
.+..++++|+.--+....-.++.-.+-|+||..+|++|.++.++..+++.+|.=. .|+. +.++.+.. +.+ ++.+.+
T Consensus 13 ~~~~~i~~GlQh~lam~~~~v~~PlilGl~~~~~l~~agi~Tllq~~~~~~~lP~~~G~sfafi~~~~~-i~~-~g~~~~ 90 (429)
T 3qe7_A 13 PLLQTIPLSLQHLFAMFGATVLVPVLFHINPATVLLFNGIGTLLYLFICKGKIPAYLGSSFAFISPVLL-LLP-LGYEVA 90 (429)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHTTTCCCCCEEECGGGHHHHHH-HGG-GCHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHhCCCHHHHHHHHHHHHHHHHHHcCCCCCeEecChHHHHHHHHH-HHh-cCHHHH
Confidence 4688999999887766555555555559999999999999999999987677533 5765 33333332 222 788999
Q ss_pred HHHHHHHHHHHHHHHHh--hcc--chhhccchhHHHHHHHHHHHHHHHhhhhhhhCccCCchhHHHHHHHHhhhccCCCc
Q psy2735 155 NLLTLLSGIIQLMMGVF--GLG--IMLDFISGPVASGFTSAVAIIITSSQIKDILGISGGGATFVKMWVNIISNIENTSY 230 (475)
Q Consensus 155 ~~lt~l~Gii~ll~Gll--rlG--~l~~fls~pVi~GF~tg~ai~I~~sQl~~llG~~~~~~~~~~~~~~~~~~l~~~~~ 230 (475)
....+++|++++++|++ |+| ++.+++|..++..|++.+|+.+.-.++++..|.... -+..++
T Consensus 91 ~gavi~aGli~ill~~~~~~~g~~~l~~~~PpvviG~~i~~IGl~l~~~~~~~~~~~~~~--------------~~~~~~ 156 (429)
T 3qe7_A 91 LGGFIMCGVLFCLVSFIVKKAGTGWLDVLFPPAAMGAIVAVIGLELAGVAAGMAGLLPAE--------------GQTPDS 156 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHTSSCBT--------------TBCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHCCCeeeHHHHHHHHHHHHHHHHHhccccCCC--------------CccccH
Confidence 99999999999999999 886 999999987777889999999998888875432111 123456
Q ss_pred chHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCccchhhhhhhhhHHhhccccchhHHHHHHHHHHHhhcCCCCCee
Q psy2735 231 PDLLVGVICIAVSLMLREIAKIRVGHKNEDDSLSEPDLTWTQNTINKIFWLIGTSRNCVIVIASGLVGYYMSQDGPPPYK 310 (475)
Q Consensus 231 ~~~~igl~~l~~L~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~p~~livvi~~t~is~~~~~~~~~~v~ 310 (475)
..+.+++.++++++++.++.|...+ .+..++.+++++++++.++.. +++
T Consensus 157 ~~~~la~~tl~iii~~~~~~kg~~~----------------------------~~aiLigivvg~~~a~~~G~~---d~~ 205 (429)
T 3qe7_A 157 KTIIISITTLAVTVLGSVLFRGFLA----------------------------IIPILIGVLVGYALSFAMGIV---DTT 205 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHSSSTTTT----------------------------THHHHHHHHHHHHHHHHHHHT---TSS
T ss_pred HHHHHHHHHHHHHHHHHHHhcccch----------------------------hhHHHHHHHHHHHHHHHhcCC---Ccc
Confidence 6788999999888887664332110 111367788889998887753 222
Q ss_pred eecccC-CCCCCccCCcccccC----------------------------CC-c---------ccchhhhHHhhhhhhHH
Q psy2735 311 IVGKLP-PGLPSVGFPLLTVQR----------------------------GN-T---------TYDFFDMVSIMGSGIFV 351 (475)
Q Consensus 311 ~vG~Ip-~glp~~~~P~~~~~~----------------------------~~-~---------~~~~~~~~~~l~~~~~~ 351 (475)
.+++.| -++|.+..|+|++.. |. + +++.+|+++++.++.
T Consensus 206 ~v~~a~~~~lP~~~~P~f~~~~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~-- 283 (429)
T 3qe7_A 206 PIINAHWFALPTLYTPRFEWFAILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGST-- 283 (429)
T ss_dssp HHHHSCSSCCCCCCCCCCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCC--
T ss_pred cccccccccccCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCC--
Confidence 344444 457777788776531 10 0 234444444444432
Q ss_pred HHHHHHHHHHHHHH-------HH---HHHHHHHHH---HhhHHhhhchhhHHHHHHHHHHHhhcChhhHHHh--hccCc
Q psy2735 352 TPLIAVVENIAVCK-------AF---AIIAICSLL---WLTPYFFYIPKASLAAVIISAVIFMVEVRVVKPI--YRSKK 415 (475)
Q Consensus 352 i~iv~~~~sisiak-------~~---a~~vLl~ll---~l~~l~~~iP~avLAaIii~~~~~l~~~~~i~~l--wr~~~ 415 (475)
+..++.||.+... .. +.+.++++. .++++++.+|+++|+|+.++ .++++....++.+ -|.+.
T Consensus 284 -p~Tt~~en~g~i~~tg~~sr~~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~-lfg~i~~~Gi~~l~~~~v~~ 360 (429)
T 3qe7_A 284 -PNTTYGENIGVMAITRVYSTWVIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLL-LYGVIGASGIRVLIESKVDY 360 (429)
T ss_dssp -CEEECHHHHHHHHHHTBCCHHHHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHH-HHHHHHHHHHHHHHHTTSCT
T ss_pred -CcchHHHhHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHH-HHHHHHHHHHHHHHhcCCCC
Confidence 1122456664321 11 122232222 45689999999999997654 8899988888877 66653
No 2
>3qe7_A Uracil permease; uracil transporter, URAA, transporter, INNE membrane protein, transport protein; HET: BNG; 2.78A {Escherichia coli}
Probab=87.23 E-value=12 Score=38.52 Aligned_cols=121 Identities=17% Similarity=0.282 Sum_probs=80.5
Q ss_pred hHHHHHHHHHHHHHHHH----HHHHHhCCC------hhhhhhhHHHHhHHHhhcCCCCccccchhHHHHHHHHHHHhccC
Q psy2735 81 DLVAGITVGLTVILQAI----AYSNIAGLE------PQYGLYGSFVGAIIYIFVGTCKDVPMGPTAMVSLVTYQAVKGYG 150 (475)
Q Consensus 81 DliAGitvg~v~IPq~m----AyA~lAglp------p~~GLyss~~~~liyalfGtS~~isvGp~a~~slmv~~~v~~~~ 150 (475)
.+..=+.++++..=+.+ |.+..+|-+ ..-++.+--++.++-++||+++..+.+-......+++ + .+
T Consensus 227 ~i~~i~~i~lV~~~Eslg~~~av~~~~g~~~~~~~~~~r~l~adGla~i~~glfGg~p~Tt~~en~g~i~~tg-~---~s 302 (429)
T 3qe7_A 227 AILTILPAALVVIAEHVGHLVVTANIVKKDLLRDPGLHRSMFANGLSTVISGFFGSTPNTTYGENIGVMAITR-V---YS 302 (429)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHHHHHHHTSCTCCCCCHHHHHHHHHHHHHHHHHHTCCCEEECHHHHHHHHHHT-B---CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcchHHHHHHHHHHHHHhcCCCCcchHHHhHHHHHhcC-C---cc
Confidence 34444566666555554 444556632 2468999999999999999998776543332221211 1 11
Q ss_pred hHHHHHHHHHHHHHHHHHHHh-hccchhhccchhHHHHHHHHHHHHHHHhhhhhh--hCccC
Q psy2735 151 PQFANLLTLLSGIIQLMMGVF-GLGIMLDFISGPVASGFTSAVAIIITSSQIKDI--LGISG 209 (475)
Q Consensus 151 ~~~a~~lt~l~Gii~ll~Gll-rlG~l~~fls~pVi~GF~tg~ai~I~~sQl~~l--lG~~~ 209 (475)
.. ....+|++.+++|++ +++.+...+|.||+.|-+...--.|..+-++.+ -..+.
T Consensus 303 -r~---~~~~ag~~lillgl~pk~~al~~~IP~~vlgg~~l~lfg~i~~~Gi~~l~~~~v~~ 360 (429)
T 3qe7_A 303 -TW---VIGGAAIFAILLSCVGKLAAAIQMIPLPVMGGVSLLLYGVIGASGIRVLIESKVDY 360 (429)
T ss_dssp -HH---HHHHHHHHHHHHTCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHTTSCT
T ss_pred -hH---HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 12 346789999999987 799999999999999976655556667777777 44443
No 3
>1bts_A BAND 3 anion transport protein; transmembrane protein; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 1btt_A
Probab=28.10 E-value=33 Score=20.95 Aligned_cols=19 Identities=21% Similarity=0.398 Sum_probs=13.9
Q ss_pred hhhhHHHHhHHHhhcCCCC
Q psy2735 110 GLYGSFVGAIIYIFVGTCK 128 (475)
Q Consensus 110 GLyss~~~~liyalfGtS~ 128 (475)
.+.++.+.+++|++|++-|
T Consensus 6 ~i~s~ai~Gi~f~lf~gQP 24 (26)
T 1bts_A 6 LLISTAVQGILFALLGAXX 24 (26)
T ss_dssp HHHHHHHHHHHHHHTTC--
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 4677888888898888765
No 4
>2ksf_A Sensor protein KDPD; methods development, histidine kinase receptor, membrane domain, four-helical bundle, cell-free synthesis, ATP- binding; NMR {Escherichia coli}
Probab=11.94 E-value=4.8e+02 Score=20.85 Aligned_cols=38 Identities=8% Similarity=0.156 Sum_probs=26.2
Q ss_pred HHHHHHHHHHhCCChhhhhhhHHHHhHHHhhcCCCCcccc
Q psy2735 93 ILQAIAYSNIAGLEPQYGLYGSFVGAIIYIFVGTCKDVPM 132 (475)
Q Consensus 93 IPq~mAyA~lAglpp~~GLyss~~~~liyalfGtS~~isv 132 (475)
++--+.-|...|.-| |+.+++.+.+.|-+|=+.|.-+.
T Consensus 38 ll~Vv~~A~~~g~~p--a~~aa~ls~l~~nffF~~P~~sf 75 (107)
T 2ksf_A 38 LLGVVVVALFYGRWP--SVVATVINVVSFDLFFIAPRGTL 75 (107)
T ss_dssp HHHHHHHHHHHSSCC--CSHHHHHHHHHHHHTTSCSSCTT
T ss_pred HHHHHHHHHHhCcHH--HHHHHHHHHHHHHHhhcCCCccc
Confidence 333445555667666 88888888888888777776554
No 5
>1wa7_B TIP, hypothetical 28.7 kDa protein in DHFR 3'region (ORF1); SH3 domain, ligand, tyrosine kinase, signal transduction, LYN; NMR {Saimiriine herpesvirus 2}
Probab=8.31 E-value=1.6e+02 Score=17.65 Aligned_cols=12 Identities=33% Similarity=0.753 Sum_probs=9.4
Q ss_pred CCCCCCccCCcc
Q psy2735 316 PPGLPSVGFPLL 327 (475)
Q Consensus 316 p~glp~~~~P~~ 327 (475)
|.|+|+|.+|.-
T Consensus 2 ~PG~P~P~LPpR 13 (26)
T 1wa7_B 2 DPGMPTPPLPPR 13 (26)
T ss_dssp CCCCCCCCCCCC
T ss_pred CCCCCCCCCCCC
Confidence 578899988863
No 6
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A
Probab=7.63 E-value=1.1e+03 Score=24.47 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=27.4
Q ss_pred HHHHHHHhCCChhhhhhhHHHHhHHHhhcCCCCccc
Q psy2735 96 AIAYSNIAGLEPQYGLYGSFVGAIIYIFVGTCKDVP 131 (475)
Q Consensus 96 ~mAyA~lAglpp~~GLyss~~~~liyalfGtS~~is 131 (475)
+.++..+.|+|...+..-...-.++|..+|+-|.++
T Consensus 151 ~~~l~~~~Gi~~~~~i~i~~~i~~~Yt~~GGl~av~ 186 (593)
T 2xq2_A 151 GLALETILGIPLMYSILGLALFALVYSIYGGLSAVV 186 (593)
T ss_dssp HHHHHHHHCCCHHHHHHHHHHHHHHHHHTTC---CC
T ss_pred HHHHHHhcCccHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 445556789999999888888889999999999775
No 7
>2y69_J Cytochrome C oxidase polypeptide 7A1; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=7.61 E-value=2.3e+02 Score=21.95 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=19.6
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHH
Q psy2735 406 VVKPIYRSKKSDLIPGLVTFIACLI 430 (475)
Q Consensus 406 ~i~~lwr~~~~D~~i~~vt~~~~l~ 430 (475)
.++-+||-++.|.+++-.|+..++.
T Consensus 38 g~PV~lKggrsd~~Ly~~t~~l~~~ 62 (80)
T 2y69_J 38 GLPVHLKGGATDNILYRVTMTLCLG 62 (80)
T ss_dssp CCCGGGTTCHHHHHHHHHHHHHHHH
T ss_pred CceeeeecCccceeHHHHHHHHHHH
Confidence 4566788889999999888877654
No 8
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=7.05 E-value=3.4e+02 Score=19.43 Aligned_cols=26 Identities=23% Similarity=0.621 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHH---HHHhhccchhh
Q psy2735 153 FANLLTLLSGIIQLM---MGVFGLGIMLD 178 (475)
Q Consensus 153 ~a~~lt~l~Gii~ll---~GllrlG~l~~ 178 (475)
....++.++|+..+. ..+.|+||.-|
T Consensus 10 WiIi~svl~GLLLL~Lii~~LwK~GFFKR 38 (54)
T 2l8s_A 10 WVILLSAFAGLLLLMLLILALWKIGFFKR 38 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 455667777777654 67788887644
No 9
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=6.99 E-value=3.5e+02 Score=19.32 Aligned_cols=27 Identities=19% Similarity=0.455 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHHHHHH---HHHhhccchhh
Q psy2735 152 QFANLLTLLSGIIQLM---MGVFGLGIMLD 178 (475)
Q Consensus 152 ~~a~~lt~l~Gii~ll---~GllrlG~l~~ 178 (475)
-....++.+.|+..+. ..+.|+||.-|
T Consensus 12 ~wiIi~svl~GLllL~li~~~LwK~GFFkR 41 (54)
T 2knc_A 12 IWWVLVGVLGGLLLLTILVLAMWKVGFFKR 41 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHcCcccC
Confidence 3456677777877654 67788888654
No 10
>1v54_J Cytochrome C oxidase polypeptide VIIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.4.1 PDB: 1oco_J* 1occ_J* 1ocz_J* 1ocr_J* 1v55_J* 2dyr_J* 2dys_J* 2eij_J* 2eik_J* 2eil_J* 2eim_J* 2ein_J* 2occ_J* 2ybb_U* 2zxw_J* 3abk_J* 3abl_J* 3abm_J* 3ag1_J* 3ag2_J* ...
Probab=6.66 E-value=6.3e+02 Score=18.21 Aligned_cols=25 Identities=24% Similarity=0.147 Sum_probs=19.2
Q ss_pred hHHHhhccCcccHHHHHHHHHHHHH
Q psy2735 406 VVKPIYRSKKSDLIPGLVTFIACLI 430 (475)
Q Consensus 406 ~i~~lwr~~~~D~~i~~vt~~~~l~ 430 (475)
.++-+||-++.|.++.-.|+..++.
T Consensus 17 g~pv~lKgg~sd~~Ly~~t~~l~~~ 41 (59)
T 1v54_J 17 GLPVHLKGGATDNILYRVTMTLCLG 41 (59)
T ss_dssp CCCTTTTTCHHHHHHHHHHHHHHHH
T ss_pred CceeEeecCcCceeHHHHHHHHHHH
Confidence 4456677889999999888877654
Done!