Query psy2735
Match_columns 475
No_of_seqs 278 out of 1338
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 23:52:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2735.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/2735hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74e1 f.23.24.1 (E:1-32) Pet 38.5 25 0.0018 20.3 4.0 18 428-445 9-26 (32)
2 d2q66a1 a.160.1.1 (A:202-351) 12.5 36 0.0026 27.7 1.5 43 185-231 26-68 (150)
3 d1q79a1 a.160.1.1 (A:215-364) 10.4 55 0.004 26.5 2.0 43 185-231 26-68 (150)
4 d1rh5c_ f.23.29.1 (C:) Sec-bet 5.5 2.8E+02 0.02 15.6 3.2 28 73-100 3-30 (32)
5 d1y9ia_ a.195.1.1 (A:) Low tem 5.0 1.5E+02 0.011 23.9 2.1 27 65-91 121-150 (159)
6 d1tlqa_ a.195.1.1 (A:) Hypothe 4.7 1.7E+02 0.012 23.7 2.2 27 65-91 122-150 (161)
7 d1q90m_ f.23.25.1 (M:) PetM su 4.5 2.2E+02 0.016 16.4 2.0 11 187-197 3-13 (34)
8 d1rfza_ a.195.1.1 (A:) YutG ho 3.5 1.9E+02 0.014 23.4 1.7 28 65-92 128-158 (164)
9 d1xmec1 f.23.9.1 (C:2-34) Bact 3.3 4E+02 0.029 15.1 2.5 13 386-398 4-16 (33)
10 d1a6qa1 a.159.1.1 (A:297-368) 3.3 2.2E+02 0.016 19.7 1.6 22 92-113 36-57 (72)
No 1
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=38.52 E-value=25 Score=20.28 Aligned_cols=18 Identities=22% Similarity=0.495 Sum_probs=10.9
Q ss_pred HHHHhhHHHHHHHHHHHH
Q psy2735 428 CLILPLEIGFVVGVGLNL 445 (475)
Q Consensus 428 ~l~~~l~~Gi~vGv~~sl 445 (475)
.++..+..|+++|+++++
T Consensus 9 ivfialffgiavgiifai 26 (32)
T d2e74e1 9 IVFIALFFGIAVGIIFAI 26 (32)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhheeeE
Confidence 344455667777776654
No 2
>d2q66a1 a.160.1.1 (A:202-351) Poly(A) polymerase, PAP, middle domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=12.52 E-value=36 Score=27.74 Aligned_cols=43 Identities=16% Similarity=0.223 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHhhhhhhhCccCCchhHHHHHHHHhhhccCCCcc
Q psy2735 185 ASGFTSAVAIIITSSQIKDILGISGGGATFVKMWVNIISNIENTSYP 231 (475)
Q Consensus 185 i~GF~tg~ai~I~~sQl~~llG~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (475)
+-||..|+++.|+++-+-.+.. +.+.-..+..+|....+++|+
T Consensus 26 ~~GylGGI~waILvArvCql~p----~a~~~~ll~~FF~~ys~W~Wp 68 (150)
T d2q66a1 26 IFGFPGGVAWAMLVARICQLYP----NACSAVILNRFFIILSEWNWP 68 (150)
T ss_dssp GGTSCCHHHHHHHHHHHHHHST----TCCHHHHHHHHHHHHHHCCTT
T ss_pred cccccHHHHHHHHHHHHHHhCC----CCCHHHHHHHHHHHHhCCCCC
Confidence 4699999999999998776652 111112334455555566664
No 3
>d1q79a1 a.160.1.1 (A:215-364) Poly(A) polymerase, PAP, middle domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=10.36 E-value=55 Score=26.51 Aligned_cols=43 Identities=9% Similarity=0.121 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHhhhhhhhCccCCchhHHHHHHHHhhhccCCCcc
Q psy2735 185 ASGFTSAVAIIITSSQIKDILGISGGGATFVKMWVNIISNIENTSYP 231 (475)
Q Consensus 185 i~GF~tg~ai~I~~sQl~~llG~~~~~~~~~~~~~~~~~~l~~~~~~ 231 (475)
+-||..|+++.|+++-+-.+..-. +.-..+..+|....+++|+
T Consensus 26 ~~GflGGI~waILvArvCql~Pna----~~~~ll~~FF~~ys~W~Wp 68 (150)
T d1q79a1 26 ILGFLGGVSWAMLVARTCQLYPNA----IASTLVHKFFLVFSKWEWP 68 (150)
T ss_dssp TTTSBCHHHHHHHHHHHHHHSTTC----CHHHHHHHHHHHHHSCCTT
T ss_pred cccccHHHHHHHHHHHHHHHCCCC----CHHHHHHHHHHHHhcCCCC
Confidence 458999999999998877655311 1112334455555666663
No 4
>d1rh5c_ f.23.29.1 (C:) Sec-beta subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=5.54 E-value=2.8e+02 Score=15.57 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=20.1
Q ss_pred CCccchhhhHHHHHHHHHHHHHHHHHHH
Q psy2735 73 YSLEDGIGDLVAGITVGLTVILQAIAYS 100 (475)
Q Consensus 73 Y~~~~l~~DliAGitvg~v~IPq~mAyA 100 (475)
+++-....+-+-|+|++.+.|-.-+.|+
T Consensus 3 fskirvkpehvigvtvafviieailtyg 30 (32)
T d1rh5c_ 3 FSKIRVKPEHVIGVTVAFVIIEAILTYG 30 (32)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccceeeccceEEEEEEehhhHHHHHhhc
Confidence 3444456677889999999887766664
No 5
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC {Listeria monocytogenes [TaxId: 1639]}
Probab=4.97 E-value=1.5e+02 Score=23.94 Aligned_cols=27 Identities=19% Similarity=0.196 Sum_probs=20.1
Q ss_pred cccccC-CCCC--ccchhhhHHHHHHHHHH
Q psy2735 65 PITRWL-PQYS--LEDGIGDLVAGITVGLT 91 (475)
Q Consensus 65 Pil~Wl-~~Y~--~~~l~~DliAGitvg~v 91 (475)
.+++|+ .+.+ ..-++.|++||+..++.
T Consensus 121 g~i~~ld~~~~g~~gv~lDDivagi~Aa~~ 150 (159)
T d1y9ia_ 121 GILAKLNEHDGIAVHTFLDDIVGAIAAAAA 150 (159)
T ss_dssp THHHHTTCCCSSCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCccchHHHHHHHHHHHHH
Confidence 446688 4454 56789999999988764
No 6
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis [TaxId: 1423]}
Probab=4.67 E-value=1.7e+02 Score=23.73 Aligned_cols=27 Identities=19% Similarity=0.271 Sum_probs=20.1
Q ss_pred cccccCCCCC--ccchhhhHHHHHHHHHH
Q psy2735 65 PITRWLPQYS--LEDGIGDLVAGITVGLT 91 (475)
Q Consensus 65 Pil~Wl~~Y~--~~~l~~DliAGitvg~v 91 (475)
.+++|+.+.+ .--+..|++||+..++.
T Consensus 122 g~i~~ld~~~~g~gv~lDDivagi~A~~~ 150 (161)
T d1tlqa_ 122 GIIKELDESPDGIHTFLDDIVAALAAAAA 150 (161)
T ss_dssp THHHHTSSSCSCCCTTHHHHHHHHHHHHH
T ss_pred HhHHHHhhcCCCcceeHHHHHHHHHHHHH
Confidence 4467776654 45589999999988764
No 7
>d1q90m_ f.23.25.1 (M:) PetM subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.50 E-value=2.2e+02 Score=16.42 Aligned_cols=11 Identities=18% Similarity=0.434 Sum_probs=6.9
Q ss_pred HHHHHHHHHHH
Q psy2735 187 GFTSAVAIIIT 197 (475)
Q Consensus 187 GF~tg~ai~I~ 197 (475)
||++|.|+.++
T Consensus 3 ~fiagta~tmi 13 (34)
T d1q90m_ 3 EFIAGTALTMV 13 (34)
T ss_dssp HHHHHHHHHHH
T ss_pred ceecchhHHHH
Confidence 66677666544
No 8
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus [TaxId: 1422]}
Probab=3.54 E-value=1.9e+02 Score=23.37 Aligned_cols=28 Identities=18% Similarity=0.294 Sum_probs=19.9
Q ss_pred cccccC-CCCC--ccchhhhHHHHHHHHHHH
Q psy2735 65 PITRWL-PQYS--LEDGIGDLVAGITVGLTV 92 (475)
Q Consensus 65 Pil~Wl-~~Y~--~~~l~~DliAGitvg~v~ 92 (475)
.+++|+ .+.+ ..-+..|++||+..++..
T Consensus 128 g~i~~ld~~~~g~~gv~lDDivagi~Aaa~s 158 (164)
T d1rfza_ 128 GILQYLNDKSTGKCNTFLDDIVGAIAAAASS 158 (164)
T ss_dssp THHHHHHCSSSSCCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCeeehHHHHHHHHHHHHHH
Confidence 445687 3444 457899999999887653
No 9
>d1xmec1 f.23.9.1 (C:2-34) Bacterial ba3 type cytochrome c oxidase subunit IIa {Thermus thermophilus [TaxId: 274]}
Probab=3.34 E-value=4e+02 Score=15.09 Aligned_cols=13 Identities=31% Similarity=0.723 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHHH
Q psy2735 386 PKASLAAVIISAV 398 (475)
Q Consensus 386 P~avLAaIii~~~ 398 (475)
|+.+|+-+.+.+.
T Consensus 4 p~gal~vi~il~l 16 (33)
T d1xmec1 4 PKGALAVILVLTL 16 (33)
T ss_dssp CHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 6666666555443
No 10
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=3.34 E-value=2.2e+02 Score=19.75 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhCCChhhhhhh
Q psy2735 92 VILQAIAYSNIAGLEPQYGLYG 113 (475)
Q Consensus 92 ~IPq~mAyA~lAglpp~~GLys 113 (475)
.+=+.|+---+-||||-=||||
T Consensus 36 ~Vm~~L~~e~Ip~LPPGGGL~s 57 (72)
T d1a6qa1 36 HVMRTLASENIPSLPPGGELAS 57 (72)
T ss_dssp HHHHHHHHTTCSSCCTTTGGGG
T ss_pred HHHHHHHhcCCCCCCCCccHHH
Confidence 3445666666789999999987
Done!