RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2735
(475 letters)
>gnl|CDD|162054 TIGR00815, sulP, high affinity sulphate transporter 1. The SulP
family is a large and ubiquitous family with over 30
sequenced members derived from bacteria, fungi, plants
and animals. Many organisms including Bacillus subtilis,
Synechocystis sp, Saccharomyces cerevisiae, Arabidopsis
thaliana and Caenorhabditis elegans possess multiple
SulP family paralogues. Many of these proteins are
functionally characterized, and all are sulfate uptake
transporters. Some transport their substrate with high
affinities, while others transport it with relatively
low affinities. Most function by SO42- :H+symport, but
SO42- :HCO3- antiport has been reported for the rat
protein (spP45380). The bacterial proteins vary in size
from 434 residues to 566 residues with one exception, a
Mycobacterium tuberculosis protein with 784 residues.
The eukaryotic proteins vary in size from 611 residues
to 893 residues with one exception, a protein designated
"early nodulin 70 protein" from Glycine max which is
reported to be of 485 residues. Thus, the eukaryotic
proteins are almost without exception larger than the
prokaryotic proteins. These proteins exhibit 10-13
putative transmembrane a-helical spanners (TMSs)
depending on the protein. The phylogenetic tree for the
SulP family reveals five principal branches. Three of
these are bacterial specific as follows: one bears a
single protein from M. tuberculosis; a second bears two
proteins, one from M. tuberculosis, the other from
Synechocystis sp, and the third bears all remaining
prokaryotic proteins. The remaining two clusters bear
only eukaryotic proteins with the animal proteins all
localized to one branch and the plant and fungal
proteins localized to the other. The generalized
transport reactions catalyzed by SulP family proteins
are: (1) SO42- (out) + nH+ (out) --> SO42- (in) + nH+
(in). (2) SO42- (out) + nHCO3- (in) SO42- (in) + nHCO3-
(out) [Transport and binding proteins, Anions].
Length = 563
Score = 220 bits (562), Expect = 2e-65
Identities = 128/464 (27%), Positives = 217/464 (46%), Gaps = 104/464 (22%)
Query: 65 PITRWLPQYSLEDGIGDLVAGITVGLTVILQAIAYSNIAGLEPQYGLYGSFVGAIIYIFV 124
P+ RWLP Y L+ GDL+AG+TVG+ +I QA+AY+ +AGL P YGLY SFV IY
Sbjct: 1 PVLRWLPHYRLKKFKGDLMAGLTVGILLIPQAMAYAILAGLSPIYGLYTSFVPPFIYALF 60
Query: 125 GTCKDVPMGPTAMVSLVTYQAVKGYG---------PQFANLLTLLSGIIQLMMGVFGLGI 175
GT +D+ +GP A++SL+ + G + A LTLL+GI Q+++G+ LG
Sbjct: 61 GTSRDIAIGPVAVMSLLLGSVIARVGLQYLFDCDAIRLAFTLTLLAGIFQVILGLLRLGF 120
Query: 176 MLDFISGPVASGFTSAVAIIITSSQIKDILGISGGGAT--FVKMWVNIIS---NIENTSY 230
+++F+S V SGF + AI I SQ+K +LGIS + + ++ + N N ++
Sbjct: 121 LIEFLSHAVISGFMTGAAITIGLSQLKGLLGISIFNTRTDTLGVVISTWAGLPNTHNWNW 180
Query: 231 PDLLVGVICIAVSLMLREIAKIRVGHKNEDDSLSEPDLTWTQNTINKIFWLIGTSRNCVI 290
L++G++ + L +++ K K+ + + V+
Sbjct: 181 CTLVIGLVLLLFLLYTKKLGKRNK----------------------KLLFAPAVAPLLVV 218
Query: 291 VIASGLVGYYMSQDGPPPYKIVGKLPPGLPSVGFPLLTVQRGNTTYDFFDMVSIMGSGIF 350
++A+ V + I+G +P GL L ++++ +
Sbjct: 219 ILATLAV--TIGLHKKQGVSILGHIPSGLSFFPPITLD----------WELLPTLAPDAI 266
Query: 351 VTPLIAVVENIAVCKAFA------------------------------------------ 368
++ ++E+IA+ ++FA
Sbjct: 267 AIAIVGLIESIAIARSFARMTGYKIDANQELVAQGIANIVGSFFSCYPATGSLSRTAVNA 326
Query: 369 -----------IIAICSL---LWLTPYFFYIPKASLAAVIISAVIFMVEVRVVKPIYRSK 414
+ AI L L LTP F+YIP+A+LAA+IISAV +++ + + ++++
Sbjct: 327 KAGCRTQLSGVVTAIVVLLVLLVLTPLFYYIPQAALAAIIISAVRGLIDYKELYKLWKAD 386
Query: 415 KSDLIPGLVTFIACLILPLEIGFVVGVGLNLMFILYHAARPKIS 458
K D + LVTF + +EIG +VGV L+ F+L ARP+ +
Sbjct: 387 KMDFVVWLVTFFGVVFTSIEIGLLVGVALSAAFLLLRIARPRGA 430
>gnl|CDD|223732 COG0659, SUL1, Sulfate permease and related transporters (MFS
superfamily) [Inorganic ion transport and metabolism].
Length = 554
Score = 158 bits (402), Expect = 1e-42
Identities = 77/316 (24%), Positives = 139/316 (43%), Gaps = 44/316 (13%)
Query: 58 KQLTKRLPITRWLPQYSLEDGIGDLVAGITVGLTVILQAIAYSNIAGLEPQYGLYGSFVG 117
K+L +P +WLP Y GDL+AG+TV + A+A++ AG+ P+ GLY S V
Sbjct: 1 KRLRSEIPTLKWLPYYFRSWLRGDLLAGLTVAAVALPLAMAFAIAAGVPPEAGLYASIVA 60
Query: 118 AIIYIFVGTCKDVPMGPTAMVSLVTYQAVKG---YGPQFANLLTLLSGIIQLMMGVFGLG 174
IIY G + + GPT ++V + G A L TLL+G+ Q+++G+ LG
Sbjct: 61 GIIYALFGGSRGLISGPTGAFAVVLAAVIASLVETGLALAFLATLLAGVFQILLGLLRLG 120
Query: 175 IMLDFISGPVASGFTSAVAIIITSSQIKDILGISGGGATFVKMWVNIISNIENTSYPDLL 234
++ FI PV GFT+ +AI+I +Q+ +LG++ + F + + + + LL
Sbjct: 121 RLIRFIPRPVLIGFTAGIAILIILTQLPVLLGLASKVSGFWAKVSALFTVLLTINLATLL 180
Query: 235 VGVICIAVSLMLREIAKIRVGHKNEDDSLSEPDLTWTQNTINKIFWLIGTSRNCVIVIAS 294
+G++ +A+ L L + +I + ++
Sbjct: 181 LGLLTLAILLFLPRLTP-------------------------RIP------SPLIALVLG 209
Query: 295 GLVGYYMSQDGPPPYKIVGKLPPGLPSVGFPLLTVQRGNTTYDFFDMVSIMGSGIFVTPL 354
L+ + D +I G LP GLP P ++ ++ + L
Sbjct: 210 TLIVWIFPLDSLRYGEIPGSLPSGLPHFRLPNVS----------LSLLLALLPYALALAL 259
Query: 355 IAVVENIAVCKAFAII 370
+ ++E++ +F +
Sbjct: 260 LGLLESLLTAVSFDGM 275
Score = 71.9 bits (177), Expect = 2e-13
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 368 AIIAICSLLWLTPYFFYIPKASLAAVIISAVIFMVEVRVVKPI-YRSKKSDLIPGLVTFI 426
A + + LL+L P YIP A+LAAV+I +++ ++KP+ + + +L+ L T +
Sbjct: 329 AALLLLLLLFLAPLVSYIPLAALAAVLILVGWGLLDWSLLKPLLRKLPRGELLVLLTTAL 388
Query: 427 ACLILPLEIGFVVGVGLNLMFILYHAARPKISMEIHT 463
+ L IG VVG+ L + + +RP I +
Sbjct: 389 LTVFFDLVIGVVVGILLACLLFIRRISRPSIVVLGRV 425
>gnl|CDD|205965 pfam13792, Sulfate_tra_GLY, Sulfate transporter N-terminal domain
with GLY motif. This domain is found usually at the
N-terminus of sulfate-transporter proteins. It carries a
highly conserved GLY sequence motif, but the function of
the domain is not known.
Length = 83
Score = 111 bits (280), Expect = 7e-30
Identities = 42/83 (50%), Positives = 57/83 (68%)
Query: 64 LPITRWLPQYSLEDGIGDLVAGITVGLTVILQAIAYSNIAGLEPQYGLYGSFVGAIIYIF 123
LPI +WLP+YS GDL+AG+TV L +I Q +AY+ +AGL P YGLY SFV +IY
Sbjct: 1 LPILQWLPKYSRSWLKGDLIAGLTVALVLIPQGMAYALLAGLPPVYGLYASFVPPLIYAL 60
Query: 124 VGTCKDVPMGPTAMVSLVTYQAV 146
G+ + + +GPTA +SL+ AV
Sbjct: 61 FGSSRHLSVGPTAAISLLVGAAV 83
>gnl|CDD|183265 PRK11660, PRK11660, putative transporter; Provisional.
Length = 568
Score = 101 bits (254), Expect = 6e-23
Identities = 59/178 (33%), Positives = 98/178 (55%), Gaps = 6/178 (3%)
Query: 69 WLPQYSLEDGIGDLVAGITVGLTVILQAIAYSNIAGLEPQYGLYGSFVGAIIYIFVGTCK 128
W +Y+ DL+AGITVG+ I A+A + +G+ PQYGLY + V I+ G +
Sbjct: 20 WKEKYTAARFTRDLIAGITVGIIAIPLAMALAIASGVPPQYGLYTAAVAGIVIALTGGSR 79
Query: 129 DVPMGPTAMVSLVTYQAVKGYGPQFANLL--TLLSGIIQLMMGVFGLGIMLDFISGPVAS 186
GPTA ++ Y + +G A LL TL+SGII ++MG+ LG ++++I V
Sbjct: 80 FSVSGPTAAFVVILYPVSQQFG--LAGLLVATLMSGIILILMGLARLGRLIEYIPLSVTL 137
Query: 187 GFTSAVAIIITSSQIKDILG--ISGGGATFVKMWVNIISNIENTSYPDLLVGVICIAV 242
GFTS + I+I + QIKD G ++ +++ + + ++ D L+G++ + V
Sbjct: 138 GFTSGIGIVIATLQIKDFFGLQMAHVPEHYLEKVGALFQALPTINWGDALIGIVTLGV 195
Score = 38.8 bits (91), Expect = 0.006
Identities = 26/100 (26%), Positives = 51/100 (51%), Gaps = 10/100 (10%)
Query: 351 VTPLIAVVENIAVCKAFAIIAICSLLWLTPYFFYIPKASLAAVIISAVIFMVEVR-VVKP 409
+P+ AV+ A++ + +LL L P Y+P +++AA+++ M E VV
Sbjct: 351 TSPISAVIH--------ALLVLLALLVLAPLLSYLPLSAMAALLLMVAWNMSEAHKVVDL 402
Query: 410 IYRSKKSDLIPGLVTFIACLILPLEIGFVVGVGL-NLMFI 448
+ + K D+I L+ ++ + I VG+ L +L+F+
Sbjct: 403 LRHAPKDDIIVMLLCMSLTVLFDMVIAISVGIVLASLLFM 442
>gnl|CDD|216188 pfam00916, Sulfate_transp, Sulfate transporter family. Mutations
in human SLC26A2 lead to several human diseases.
Length = 279
Score = 85.7 bits (213), Expect = 9e-19
Identities = 68/308 (22%), Positives = 124/308 (40%), Gaps = 86/308 (27%)
Query: 168 MGVFGLGIMLDFISGPVASGFTSAVAIIITSSQIKDILGISG----GGATFVKMWVNIIS 223
+G+ LG +++F+S V SGF + AI+I SQ+K +LG+S G + ++ +++
Sbjct: 1 LGLLRLGFLVEFLSRAVISGFMAGAAILILLSQLKGLLGLSNTRHSGIVSVLRALFDLVD 60
Query: 224 NIENTSYPDLLVGVICIAVSLMLREIAKIRVGHKNEDDSLSEPDLTWTQNTINKIFWLIG 283
N+ N P L++G+ + L+++ + K K + I
Sbjct: 61 NLWNW--PTLVIGLSFLIFLLIIKLLPKR-----------------------LKKLFWIP 95
Query: 284 TSRNCVIVIASGLVGYYMSQDGPPPYKIVGKLPPGLPSVGFPLLTVQRGNTTYDFFDMVS 343
V VI + ++ Y D I+G++P GLP P + + D++
Sbjct: 96 APAPLVAVIVATVISYIFLAD-RYGVSIIGEIPSGLPPPSLPDVPL----DWSLLLDLLP 150
Query: 344 IMGS----GIFVTPLIAVV-------------ENIA---------------VCKAF---- 367
I + G+ + L A E +A +F
Sbjct: 151 IALALAIVGLLESILTAKSFAKKKGYKIDSNKELVAQGIANIVSSLFGGYPATGSFSRSA 210
Query: 368 ----------------AIIAICSLLWLTPYFFYIPKASLAAVIISAVIFMVEVRVVKPIY 411
A++ + LL+LTP YIP A LAA+II A+I +++ + ++
Sbjct: 211 VNVKAGAKTQLSGIVMAVVVLLVLLFLTPLLAYIPMAVLAAIIIVALIGLIDWSELIRLW 270
Query: 412 RSKKSDLI 419
+ KSD +
Sbjct: 271 KLSKSDFL 278
>gnl|CDD|225615 COG3073, RseA, Negative regulator of sigma E activity [Signal
transduction mechanisms].
Length = 213
Score = 30.2 bits (68), Expect = 1.7
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 2/43 (4%)
Query: 130 VPMGPTAMVSLVTYQAVKGYGPQFANLLTLLSGIIQL--MMGV 170
+G A VSL V+ Y + A + ++Q + G
Sbjct: 106 TQVGVAACVSLAVIVGVQPYNGKSAASQEPETPVLQTLPLNGK 148
>gnl|CDD|224214 COG1295, Rbn, Ribonuclease BN family enzyme [Replication,
recombination, and repair].
Length = 303
Score = 30.4 bits (69), Expect = 2.1
Identities = 15/89 (16%), Positives = 33/89 (37%), Gaps = 3/89 (3%)
Query: 344 IMGSGIFVTPLIAVVENIAVCKAFAIIAICSLLWLTPYFFYIPKASLAAVIISAVIFMVE 403
+ L++VV IA+ + L + L ++++ + F +
Sbjct: 150 GTLLPLLFALLLSVVGPIALQALLLRFGLPFFDVLVLILLRLR--LLVSLLLLTLGFFLL 207
Query: 404 VRVVKPIYRSKKSDLIPG-LVTFIACLIL 431
R + + K D++PG L+ I +
Sbjct: 208 YRFLPNVRVLKWRDVLPGALLAAILFELG 236
>gnl|CDD|233217 TIGR00974, 3a0107s02c, phosphate ABC transporter, permease protein
PstA. This model describes PtsA, one of a pair of
permease proteins in the ABC (high affinity) phosphate
transporter. In a number of species, this permease is
fused with the PtsC protein (TIGR02138). In the model
bacterium Escherichia coli, this transport system is
induced when the concentration of extrallular inorganic
phosphate is low. A constitutive, lower affinity
transporter operates otherwise [Transport and binding
proteins, Anions].
Length = 271
Score = 29.5 bits (67), Expect = 3.2
Identities = 20/87 (22%), Positives = 41/87 (47%)
Query: 110 GLYGSFVGAIIYIFVGTCKDVPMGPTAMVSLVTYQAVKGYGPQFANLLTLLSGIIQLMMG 169
G+ + VG ++ I + VP+G A + L Y + + +L+G+ +++G
Sbjct: 51 GIGPAIVGTLLLILLAIVIAVPLGIGAAIYLAEYANESRFTKVIRFAVDILAGVPSIVVG 110
Query: 170 VFGLGIMLDFISGPVASGFTSAVAIII 196
+FG G + + G S A+A+ +
Sbjct: 111 LFGYGFFVLTMLGGGFSLLAGALALAL 137
>gnl|CDD|177009 CHL00070, petB, cytochrome b6.
Length = 215
Score = 29.3 bits (66), Expect = 3.9
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 289 VIVIASGLVGYYMSQD--GPPPYKIVGKLPPGLPSVGFPLLTVQRGNTTYDFFDMVSIMG 346
V+ ++ G+ GY + D G KIV +P +P +G PL+ + RG+ + +
Sbjct: 126 VLTVSFGVTGYSLPWDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSVSVGQSTLTRFYS 185
Query: 347 SGIFVTPLIAVV 358
FV PL+ V
Sbjct: 186 LHTFVLPLLTAV 197
>gnl|CDD|224428 COG1511, COG1511, Predicted membrane protein [Function unknown].
Length = 780
Score = 29.0 bits (65), Expect = 6.4
Identities = 30/140 (21%), Positives = 52/140 (37%), Gaps = 18/140 (12%)
Query: 104 GLEPQYGLYGSFVGAIIYIFVGTCKDVPMGPTAMVSLVTYQAVKGYGPQFANLLTLLSGI 163
GL P Y +VGA++ + T D+ G L G NL+ + G+
Sbjct: 584 GLAPFYTALALWVGALLTSLLTTDVDLSDGI-----LNGRVYFFG-----KNLVFITLGL 633
Query: 164 IQLMMGVFGLGIMLDFISGPVA-----SGFTSAVAIIITSSQIKDILGISGGGATFVKMW 218
IQ ++ GL ++L + F+S +II + + G G V +
Sbjct: 634 IQSLIVTLGLVLLLGVEVKSPLLLVLFAIFSSVAFMIIIYLLVS-LFGNPGKFIAIVLLV 692
Query: 219 VNIISNIENTSYPDLLVGVI 238
+ I + ++P L
Sbjct: 693 LQIAGSG--GTFPIQLSPSF 710
>gnl|CDD|233511 TIGR01654, bact_immun_7tm, bacteriocin-associated integral membrane
(putative immunity) protein. This model represents a
family of integral membrane proteins, most of which are
about 650 residues in size and predicted to span the
membrane seven times. Nearly half of the members of this
family are found in association with a member of the
lactococcin 972 family of bacteriocins (TIGR01653).
Others may be associated with uncharacterized proteins
that may also act as bacteriocins. Although this protein
is suggested to be an immunity protein, and the
bacteriocin is suggested to be exported by a
Sec-dependent process, the role of this protein is
unclear [Cellular processes, Toxin production and
resistance].
Length = 679
Score = 28.9 bits (65), Expect = 6.8
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 164 IQLMMGVFGLGIMLDFISGPVASGFTSAVAIIITSSQIKDILGISGGGATFVKM 217
I + G I+ S SA+ I++ SS + I G + ++ M
Sbjct: 197 IYRLNGFSLRKILFRLFSKNCTYLLISALLILLLSSFLLFIKGYTYLLKDYIFM 250
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 28.3 bits (64), Expect = 9.7
Identities = 10/40 (25%), Positives = 21/40 (52%)
Query: 376 LWLTPYFFYIPKASLAAVIISAVIFMVEVRVVKPIYRSKK 415
W P+F + K + A++I +IF V ++P+ ++
Sbjct: 431 FWQQPWFMDLIKLAAGALLILILIFFVLRPRLRPLLPEEE 470
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.142 0.422
Gapped
Lambda K H
0.267 0.0736 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,988,697
Number of extensions: 2575754
Number of successful extensions: 3689
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3651
Number of HSP's successfully gapped: 178
Length of query: 475
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 374
Effective length of database: 6,457,848
Effective search space: 2415235152
Effective search space used: 2415235152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 61 (27.3 bits)