RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2735
         (475 letters)



>d1y1pa1 c.2.1.2 (A:2-343) Aldehyde reductase II {Sporobolomyces
           salmonicolor [TaxId: 5005]}
          Length = 342

 Score = 27.5 bits (59), Expect = 4.3
 Identities = 7/24 (29%), Positives = 10/24 (41%)

Query: 61  TKRLPITRWLPQYSLEDGIGDLVA 84
            + L         S+E+ I DLV 
Sbjct: 315 LEILKSLGRPGWRSIEESIKDLVG 338


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 27.2 bits (60), Expect = 6.2
 Identities = 11/54 (20%), Positives = 22/54 (40%), Gaps = 10/54 (18%)

Query: 218 WVNIISNIENTSYPDLLVGVICIAVSLMLREIAKIRVGHKNEDDSL--SEPDLT 269
           W  ++  I+ T+          I  +     + + R+   N  D L  ++PD+T
Sbjct: 464 WSEVLPQIQETT--------ARIIFNGKDLNLVERRIAAVNPSDPLETTKPDMT 509


>d2p8ta2 d.74.4.2 (A:83-199) Hypothetical protein PH0730 {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 117

 Score = 25.2 bits (55), Expect = 9.3
 Identities = 10/25 (40%), Positives = 12/25 (48%)

Query: 299 YYMSQDGPPPYKIVGKLPPGLPSVG 323
             +S DG P   IV K PP   S+ 
Sbjct: 6   IGVSVDGYPGIAIVVKNPPEFKSIE 30


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.142    0.422 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,779,260
Number of extensions: 85319
Number of successful extensions: 261
Number of sequences better than 10.0: 1
Number of HSP's gapped: 261
Number of HSP's successfully gapped: 10
Length of query: 475
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 386
Effective length of database: 1,185,626
Effective search space: 457651636
Effective search space used: 457651636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 55 (25.2 bits)